Multiple sequence alignment - TraesCS4A01G205800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G205800 chr4A 100.000 3899 0 0 1 3899 498674787 498678685 0.000000e+00 7201
1 TraesCS4A01G205800 chr4D 95.822 2609 82 12 581 3185 84985351 84987936 0.000000e+00 4189
2 TraesCS4A01G205800 chr4D 93.724 717 42 3 3184 3899 84988003 84988717 0.000000e+00 1072
3 TraesCS4A01G205800 chr4B 95.635 2543 77 13 652 3185 122035656 122038173 0.000000e+00 4050
4 TraesCS4A01G205800 chr4B 93.707 588 34 3 3184 3770 122038244 122038829 0.000000e+00 878
5 TraesCS4A01G205800 chr4B 91.908 173 14 0 303 475 188158300 188158472 3.890000e-60 243
6 TraesCS4A01G205800 chr4B 90.714 140 8 2 3765 3899 122040850 122040989 8.610000e-42 182
7 TraesCS4A01G205800 chr7B 88.435 294 34 0 1 294 583994073 583993780 4.790000e-94 355
8 TraesCS4A01G205800 chr7B 86.645 307 40 1 1 306 485470698 485471004 4.830000e-89 339
9 TraesCS4A01G205800 chr3D 87.582 306 38 0 1 306 181574824 181574519 4.790000e-94 355
10 TraesCS4A01G205800 chr3D 86.601 306 41 0 1 306 458147232 458146927 4.830000e-89 339
11 TraesCS4A01G205800 chr7A 87.255 306 38 1 1 306 659598588 659598284 8.020000e-92 348
12 TraesCS4A01G205800 chr1D 86.928 306 40 0 1 306 466408658 466408353 1.040000e-90 344
13 TraesCS4A01G205800 chr1D 89.595 173 18 0 303 475 41716111 41715939 1.820000e-53 220
14 TraesCS4A01G205800 chr2B 86.842 304 40 0 3 306 766184727 766184424 1.340000e-89 340
15 TraesCS4A01G205800 chr7D 86.601 306 41 0 1 306 135329701 135330006 4.830000e-89 339
16 TraesCS4A01G205800 chr7D 89.595 173 18 0 303 475 31071820 31071992 1.820000e-53 220
17 TraesCS4A01G205800 chr5D 86.601 306 41 0 1 306 478590185 478590490 4.830000e-89 339
18 TraesCS4A01G205800 chr5D 90.173 173 17 0 303 475 484639653 484639825 3.920000e-55 226
19 TraesCS4A01G205800 chr6D 90.173 173 17 0 303 475 75988301 75988129 3.920000e-55 226
20 TraesCS4A01G205800 chr6D 90.173 173 17 0 303 475 99583540 99583712 3.920000e-55 226
21 TraesCS4A01G205800 chr3A 90.058 171 17 0 303 473 158405804 158405974 5.070000e-54 222
22 TraesCS4A01G205800 chr2A 90.058 171 17 0 303 473 684268560 684268730 5.070000e-54 222
23 TraesCS4A01G205800 chr2A 89.941 169 17 0 305 473 767779259 767779427 6.560000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G205800 chr4A 498674787 498678685 3898 False 7201.000000 7201 100.000 1 3899 1 chr4A.!!$F1 3898
1 TraesCS4A01G205800 chr4D 84985351 84988717 3366 False 2630.500000 4189 94.773 581 3899 2 chr4D.!!$F1 3318
2 TraesCS4A01G205800 chr4B 122035656 122040989 5333 False 1703.333333 4050 93.352 652 3899 3 chr4B.!!$F2 3247

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.028242 CGTTCGAGATCCTGTCCGAG 59.972 60.000 0.00 0.00 33.31 4.63 F
545 546 0.036765 ACGAGCGTTGAATGCCCTAA 60.037 50.000 5.64 0.00 0.00 2.69 F
774 777 0.109964 CTAGAGAGGCAGCGCGTATC 60.110 60.000 8.43 8.93 35.33 2.24 F
1704 1707 0.389817 TCGGATGTCTCGCCTTTGTG 60.390 55.000 0.00 0.00 0.00 3.33 F
1995 1998 4.314440 AAGAACTGCTCGGCGGCA 62.314 61.111 19.17 19.17 38.71 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1727 1730 0.508641 CCACACGAAGAAGCACGAAG 59.491 55.000 0.00 0.0 0.00 3.79 R
1890 1893 0.599728 GGCCGATGATGCTGTCTCTC 60.600 60.000 0.00 0.0 0.00 3.20 R
2298 2301 1.277326 TCGCCTCAAAATCGTCATCG 58.723 50.000 0.00 0.0 38.55 3.84 R
2733 2736 2.158755 AGGCCTGTCCGGAATGATTAAG 60.159 50.000 5.23 0.0 40.77 1.85 R
3739 3829 2.163509 GAGCCACCTTCCTTTTTCCTC 58.836 52.381 0.00 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.911989 CGCGTAACCTAGTCGTCAT 57.088 52.632 0.00 0.00 0.00 3.06
19 20 1.739618 CGCGTAACCTAGTCGTCATC 58.260 55.000 0.00 0.00 0.00 2.92
20 21 1.329906 CGCGTAACCTAGTCGTCATCT 59.670 52.381 0.00 0.00 0.00 2.90
21 22 2.541346 CGCGTAACCTAGTCGTCATCTA 59.459 50.000 0.00 0.00 0.00 1.98
22 23 3.186001 CGCGTAACCTAGTCGTCATCTAT 59.814 47.826 0.00 0.00 0.00 1.98
23 24 4.319333 CGCGTAACCTAGTCGTCATCTATT 60.319 45.833 0.00 0.00 0.00 1.73
24 25 4.910456 GCGTAACCTAGTCGTCATCTATTG 59.090 45.833 0.00 0.00 0.00 1.90
25 26 5.505324 GCGTAACCTAGTCGTCATCTATTGT 60.505 44.000 0.00 0.00 0.00 2.71
26 27 6.493116 CGTAACCTAGTCGTCATCTATTGTT 58.507 40.000 0.00 0.00 0.00 2.83
27 28 6.632035 CGTAACCTAGTCGTCATCTATTGTTC 59.368 42.308 0.00 0.00 0.00 3.18
28 29 5.517322 ACCTAGTCGTCATCTATTGTTCC 57.483 43.478 0.00 0.00 0.00 3.62
29 30 5.202004 ACCTAGTCGTCATCTATTGTTCCT 58.798 41.667 0.00 0.00 0.00 3.36
30 31 5.657302 ACCTAGTCGTCATCTATTGTTCCTT 59.343 40.000 0.00 0.00 0.00 3.36
31 32 6.832384 ACCTAGTCGTCATCTATTGTTCCTTA 59.168 38.462 0.00 0.00 0.00 2.69
32 33 7.140048 CCTAGTCGTCATCTATTGTTCCTTAC 58.860 42.308 0.00 0.00 0.00 2.34
33 34 6.777213 AGTCGTCATCTATTGTTCCTTACT 57.223 37.500 0.00 0.00 0.00 2.24
34 35 6.797454 AGTCGTCATCTATTGTTCCTTACTC 58.203 40.000 0.00 0.00 0.00 2.59
35 36 6.603997 AGTCGTCATCTATTGTTCCTTACTCT 59.396 38.462 0.00 0.00 0.00 3.24
36 37 6.693545 GTCGTCATCTATTGTTCCTTACTCTG 59.306 42.308 0.00 0.00 0.00 3.35
37 38 6.377429 TCGTCATCTATTGTTCCTTACTCTGT 59.623 38.462 0.00 0.00 0.00 3.41
38 39 6.473778 CGTCATCTATTGTTCCTTACTCTGTG 59.526 42.308 0.00 0.00 0.00 3.66
39 40 6.256757 GTCATCTATTGTTCCTTACTCTGTGC 59.743 42.308 0.00 0.00 0.00 4.57
40 41 6.155221 TCATCTATTGTTCCTTACTCTGTGCT 59.845 38.462 0.00 0.00 0.00 4.40
41 42 5.724328 TCTATTGTTCCTTACTCTGTGCTG 58.276 41.667 0.00 0.00 0.00 4.41
42 43 2.169832 TGTTCCTTACTCTGTGCTGC 57.830 50.000 0.00 0.00 0.00 5.25
43 44 1.270839 TGTTCCTTACTCTGTGCTGCC 60.271 52.381 0.00 0.00 0.00 4.85
44 45 1.002544 GTTCCTTACTCTGTGCTGCCT 59.997 52.381 0.00 0.00 0.00 4.75
45 46 0.898320 TCCTTACTCTGTGCTGCCTC 59.102 55.000 0.00 0.00 0.00 4.70
46 47 0.107945 CCTTACTCTGTGCTGCCTCC 60.108 60.000 0.00 0.00 0.00 4.30
47 48 0.459237 CTTACTCTGTGCTGCCTCCG 60.459 60.000 0.00 0.00 0.00 4.63
48 49 0.898326 TTACTCTGTGCTGCCTCCGA 60.898 55.000 0.00 0.00 0.00 4.55
49 50 1.595993 TACTCTGTGCTGCCTCCGAC 61.596 60.000 0.00 0.00 0.00 4.79
50 51 3.978723 CTCTGTGCTGCCTCCGACG 62.979 68.421 0.00 0.00 0.00 5.12
51 52 4.056125 CTGTGCTGCCTCCGACGA 62.056 66.667 0.00 0.00 0.00 4.20
52 53 3.362399 CTGTGCTGCCTCCGACGAT 62.362 63.158 0.00 0.00 0.00 3.73
53 54 2.583593 GTGCTGCCTCCGACGATC 60.584 66.667 0.00 0.00 0.00 3.69
54 55 3.838271 TGCTGCCTCCGACGATCC 61.838 66.667 0.00 0.00 0.00 3.36
55 56 4.593864 GCTGCCTCCGACGATCCC 62.594 72.222 0.00 0.00 0.00 3.85
56 57 3.147595 CTGCCTCCGACGATCCCA 61.148 66.667 0.00 0.00 0.00 4.37
57 58 2.443952 TGCCTCCGACGATCCCAT 60.444 61.111 0.00 0.00 0.00 4.00
58 59 2.032860 CTGCCTCCGACGATCCCATT 62.033 60.000 0.00 0.00 0.00 3.16
59 60 1.301009 GCCTCCGACGATCCCATTC 60.301 63.158 0.00 0.00 0.00 2.67
60 61 1.367840 CCTCCGACGATCCCATTCC 59.632 63.158 0.00 0.00 0.00 3.01
61 62 1.007271 CTCCGACGATCCCATTCCG 60.007 63.158 0.00 0.00 0.00 4.30
62 63 1.452953 CTCCGACGATCCCATTCCGA 61.453 60.000 0.00 0.00 0.00 4.55
63 64 0.826256 TCCGACGATCCCATTCCGAT 60.826 55.000 0.00 0.00 0.00 4.18
64 65 0.667487 CCGACGATCCCATTCCGATG 60.667 60.000 0.00 0.00 0.00 3.84
65 66 0.313987 CGACGATCCCATTCCGATGA 59.686 55.000 0.00 0.00 35.16 2.92
66 67 1.784525 GACGATCCCATTCCGATGAC 58.215 55.000 0.00 0.00 35.16 3.06
67 68 0.393077 ACGATCCCATTCCGATGACC 59.607 55.000 0.00 0.00 35.16 4.02
68 69 0.667487 CGATCCCATTCCGATGACCG 60.667 60.000 0.00 0.00 35.16 4.79
69 70 0.951040 GATCCCATTCCGATGACCGC 60.951 60.000 0.00 0.00 35.16 5.68
70 71 2.715532 ATCCCATTCCGATGACCGCG 62.716 60.000 0.00 0.00 35.16 6.46
71 72 2.202878 CCATTCCGATGACCGCGT 60.203 61.111 4.92 0.00 35.16 6.01
72 73 2.525248 CCATTCCGATGACCGCGTG 61.525 63.158 4.92 0.00 35.16 5.34
73 74 2.890474 ATTCCGATGACCGCGTGC 60.890 61.111 4.92 0.00 36.84 5.34
74 75 3.657448 ATTCCGATGACCGCGTGCA 62.657 57.895 4.92 2.40 36.84 4.57
84 85 3.410516 CGCGTGCACGGTTGATCA 61.411 61.111 37.47 0.00 40.23 2.92
85 86 2.476051 GCGTGCACGGTTGATCAG 59.524 61.111 37.47 9.74 40.23 2.90
86 87 3.027170 GCGTGCACGGTTGATCAGG 62.027 63.158 37.47 8.98 40.23 3.86
87 88 1.374125 CGTGCACGGTTGATCAGGA 60.374 57.895 31.15 0.00 35.37 3.86
88 89 0.948623 CGTGCACGGTTGATCAGGAA 60.949 55.000 31.15 0.00 35.37 3.36
89 90 1.234821 GTGCACGGTTGATCAGGAAA 58.765 50.000 0.00 0.00 0.00 3.13
90 91 1.197721 GTGCACGGTTGATCAGGAAAG 59.802 52.381 0.00 0.00 0.00 2.62
91 92 1.202758 TGCACGGTTGATCAGGAAAGT 60.203 47.619 0.00 0.00 0.00 2.66
92 93 2.037902 TGCACGGTTGATCAGGAAAGTA 59.962 45.455 0.00 0.00 0.00 2.24
93 94 2.673368 GCACGGTTGATCAGGAAAGTAG 59.327 50.000 0.00 0.00 0.00 2.57
94 95 3.616560 GCACGGTTGATCAGGAAAGTAGA 60.617 47.826 0.00 0.00 0.00 2.59
95 96 4.759782 CACGGTTGATCAGGAAAGTAGAT 58.240 43.478 0.00 0.00 0.00 1.98
96 97 4.568359 CACGGTTGATCAGGAAAGTAGATG 59.432 45.833 0.00 0.00 0.00 2.90
97 98 3.557595 CGGTTGATCAGGAAAGTAGATGC 59.442 47.826 0.00 0.00 0.00 3.91
98 99 3.879892 GGTTGATCAGGAAAGTAGATGCC 59.120 47.826 0.00 0.00 0.00 4.40
99 100 4.384647 GGTTGATCAGGAAAGTAGATGCCT 60.385 45.833 0.00 0.00 0.00 4.75
100 101 4.679373 TGATCAGGAAAGTAGATGCCTC 57.321 45.455 0.00 0.00 0.00 4.70
101 102 3.389329 TGATCAGGAAAGTAGATGCCTCC 59.611 47.826 0.00 0.00 0.00 4.30
102 103 1.757118 TCAGGAAAGTAGATGCCTCCG 59.243 52.381 0.00 0.00 0.00 4.63
103 104 1.123928 AGGAAAGTAGATGCCTCCGG 58.876 55.000 0.00 0.00 0.00 5.14
104 105 1.120530 GGAAAGTAGATGCCTCCGGA 58.879 55.000 2.93 2.93 0.00 5.14
105 106 1.485066 GGAAAGTAGATGCCTCCGGAA 59.515 52.381 5.23 0.00 0.00 4.30
106 107 2.552031 GAAAGTAGATGCCTCCGGAAC 58.448 52.381 5.23 0.48 0.00 3.62
107 108 0.831307 AAGTAGATGCCTCCGGAACC 59.169 55.000 5.23 0.00 0.00 3.62
108 109 1.049289 AGTAGATGCCTCCGGAACCC 61.049 60.000 5.23 0.00 0.00 4.11
109 110 1.049289 GTAGATGCCTCCGGAACCCT 61.049 60.000 5.23 3.73 0.00 4.34
110 111 1.048724 TAGATGCCTCCGGAACCCTG 61.049 60.000 5.23 0.00 0.00 4.45
111 112 4.115199 ATGCCTCCGGAACCCTGC 62.115 66.667 5.23 4.09 0.00 4.85
118 119 4.367023 CGGAACCCTGCCGTTCGA 62.367 66.667 0.00 0.00 42.57 3.71
119 120 2.434359 GGAACCCTGCCGTTCGAG 60.434 66.667 0.00 0.00 42.57 4.04
120 121 2.654877 GAACCCTGCCGTTCGAGA 59.345 61.111 0.00 0.00 33.35 4.04
121 122 1.218316 GAACCCTGCCGTTCGAGAT 59.782 57.895 0.00 0.00 33.35 2.75
122 123 0.806492 GAACCCTGCCGTTCGAGATC 60.806 60.000 0.00 0.00 33.35 2.75
123 124 2.107141 CCCTGCCGTTCGAGATCC 59.893 66.667 0.00 0.00 0.00 3.36
124 125 2.427245 CCCTGCCGTTCGAGATCCT 61.427 63.158 0.00 0.00 0.00 3.24
125 126 1.227089 CCTGCCGTTCGAGATCCTG 60.227 63.158 0.00 0.00 0.00 3.86
126 127 1.513158 CTGCCGTTCGAGATCCTGT 59.487 57.895 0.00 0.00 0.00 4.00
127 128 0.526524 CTGCCGTTCGAGATCCTGTC 60.527 60.000 0.00 0.00 0.00 3.51
128 129 1.227002 GCCGTTCGAGATCCTGTCC 60.227 63.158 0.00 0.00 0.00 4.02
129 130 1.064296 CCGTTCGAGATCCTGTCCG 59.936 63.158 0.00 0.00 0.00 4.79
130 131 1.374343 CCGTTCGAGATCCTGTCCGA 61.374 60.000 0.00 0.00 0.00 4.55
131 132 0.028242 CGTTCGAGATCCTGTCCGAG 59.972 60.000 0.00 0.00 33.31 4.63
132 133 1.380524 GTTCGAGATCCTGTCCGAGA 58.619 55.000 0.00 0.00 33.31 4.04
133 134 1.332375 GTTCGAGATCCTGTCCGAGAG 59.668 57.143 0.00 0.00 33.31 3.20
134 135 0.831307 TCGAGATCCTGTCCGAGAGA 59.169 55.000 0.00 0.00 0.00 3.10
135 136 1.209747 TCGAGATCCTGTCCGAGAGAA 59.790 52.381 0.00 0.00 0.00 2.87
136 137 1.332375 CGAGATCCTGTCCGAGAGAAC 59.668 57.143 0.00 0.00 0.00 3.01
137 138 1.332375 GAGATCCTGTCCGAGAGAACG 59.668 57.143 0.00 0.00 0.00 3.95
146 147 1.571919 CCGAGAGAACGGCAATAAGG 58.428 55.000 0.00 0.00 46.20 2.69
147 148 1.134788 CCGAGAGAACGGCAATAAGGT 60.135 52.381 0.00 0.00 46.20 3.50
148 149 2.618053 CGAGAGAACGGCAATAAGGTT 58.382 47.619 0.00 0.00 0.00 3.50
149 150 3.000727 CGAGAGAACGGCAATAAGGTTT 58.999 45.455 0.00 0.00 0.00 3.27
150 151 3.435671 CGAGAGAACGGCAATAAGGTTTT 59.564 43.478 0.00 0.00 0.00 2.43
151 152 4.083484 CGAGAGAACGGCAATAAGGTTTTT 60.083 41.667 0.00 0.00 0.00 1.94
152 153 5.121221 AGAGAACGGCAATAAGGTTTTTG 57.879 39.130 0.00 0.00 0.00 2.44
153 154 4.022329 AGAGAACGGCAATAAGGTTTTTGG 60.022 41.667 0.00 0.00 0.00 3.28
154 155 3.006430 AGAACGGCAATAAGGTTTTTGGG 59.994 43.478 0.00 0.00 0.00 4.12
155 156 1.621317 ACGGCAATAAGGTTTTTGGGG 59.379 47.619 0.00 0.00 0.00 4.96
156 157 1.896465 CGGCAATAAGGTTTTTGGGGA 59.104 47.619 0.00 0.00 0.00 4.81
157 158 2.094234 CGGCAATAAGGTTTTTGGGGAG 60.094 50.000 0.00 0.00 0.00 4.30
158 159 2.354704 GGCAATAAGGTTTTTGGGGAGC 60.355 50.000 0.00 0.00 0.00 4.70
159 160 2.673893 GCAATAAGGTTTTTGGGGAGCG 60.674 50.000 0.00 0.00 0.00 5.03
160 161 2.560981 CAATAAGGTTTTTGGGGAGCGT 59.439 45.455 0.00 0.00 0.00 5.07
161 162 1.900245 TAAGGTTTTTGGGGAGCGTC 58.100 50.000 0.00 0.00 0.00 5.19
162 163 0.185175 AAGGTTTTTGGGGAGCGTCT 59.815 50.000 0.00 0.00 0.00 4.18
163 164 0.250770 AGGTTTTTGGGGAGCGTCTC 60.251 55.000 0.00 0.00 0.00 3.36
164 165 0.536460 GGTTTTTGGGGAGCGTCTCA 60.536 55.000 8.71 0.00 31.08 3.27
165 166 1.534729 GTTTTTGGGGAGCGTCTCAT 58.465 50.000 8.71 0.00 31.08 2.90
166 167 1.886542 GTTTTTGGGGAGCGTCTCATT 59.113 47.619 8.71 0.00 31.08 2.57
167 168 1.533625 TTTTGGGGAGCGTCTCATTG 58.466 50.000 8.71 0.00 31.08 2.82
168 169 0.960364 TTTGGGGAGCGTCTCATTGC 60.960 55.000 8.71 0.00 31.08 3.56
169 170 2.892425 GGGGAGCGTCTCATTGCG 60.892 66.667 8.71 0.00 35.87 4.85
170 171 2.184322 GGGAGCGTCTCATTGCGA 59.816 61.111 8.71 0.00 35.87 5.10
171 172 2.167861 GGGAGCGTCTCATTGCGAC 61.168 63.158 8.71 0.00 35.87 5.19
172 173 1.153745 GGAGCGTCTCATTGCGACT 60.154 57.895 5.34 0.00 35.87 4.18
173 174 1.416813 GGAGCGTCTCATTGCGACTG 61.417 60.000 5.34 0.96 35.87 3.51
174 175 2.018582 GAGCGTCTCATTGCGACTGC 62.019 60.000 12.49 12.49 43.20 4.40
175 176 2.097038 GCGTCTCATTGCGACTGCT 61.097 57.895 12.88 0.00 43.34 4.24
176 177 1.994467 CGTCTCATTGCGACTGCTC 59.006 57.895 5.34 0.00 43.34 4.26
177 178 0.457509 CGTCTCATTGCGACTGCTCT 60.458 55.000 5.34 0.00 43.34 4.09
178 179 1.276415 GTCTCATTGCGACTGCTCTC 58.724 55.000 0.00 0.00 43.34 3.20
179 180 0.179153 TCTCATTGCGACTGCTCTCG 60.179 55.000 0.00 0.00 43.34 4.04
180 181 0.179153 CTCATTGCGACTGCTCTCGA 60.179 55.000 7.66 0.00 43.34 4.04
181 182 0.457443 TCATTGCGACTGCTCTCGAT 59.543 50.000 7.66 0.00 43.34 3.59
182 183 0.851495 CATTGCGACTGCTCTCGATC 59.149 55.000 7.66 0.00 43.34 3.69
183 184 0.743688 ATTGCGACTGCTCTCGATCT 59.256 50.000 7.66 0.00 43.34 2.75
184 185 0.179153 TTGCGACTGCTCTCGATCTG 60.179 55.000 7.66 0.00 43.34 2.90
185 186 1.308783 TGCGACTGCTCTCGATCTGT 61.309 55.000 7.66 0.00 43.34 3.41
186 187 0.179150 GCGACTGCTCTCGATCTGTT 60.179 55.000 7.66 0.00 38.39 3.16
187 188 1.821336 CGACTGCTCTCGATCTGTTC 58.179 55.000 0.00 0.00 35.58 3.18
188 189 1.532921 CGACTGCTCTCGATCTGTTCC 60.533 57.143 0.00 0.00 35.58 3.62
189 190 0.820871 ACTGCTCTCGATCTGTTCCC 59.179 55.000 0.00 0.00 0.00 3.97
190 191 0.820226 CTGCTCTCGATCTGTTCCCA 59.180 55.000 0.00 0.00 0.00 4.37
191 192 0.820226 TGCTCTCGATCTGTTCCCAG 59.180 55.000 0.00 0.00 40.25 4.45
192 193 0.820871 GCTCTCGATCTGTTCCCAGT 59.179 55.000 0.00 0.00 39.82 4.00
193 194 1.205893 GCTCTCGATCTGTTCCCAGTT 59.794 52.381 0.00 0.00 39.82 3.16
194 195 2.737039 GCTCTCGATCTGTTCCCAGTTC 60.737 54.545 0.00 0.00 39.82 3.01
195 196 1.825474 TCTCGATCTGTTCCCAGTTCC 59.175 52.381 0.00 0.00 39.82 3.62
196 197 0.530744 TCGATCTGTTCCCAGTTCCG 59.469 55.000 0.00 0.00 39.82 4.30
197 198 0.246635 CGATCTGTTCCCAGTTCCGT 59.753 55.000 0.00 0.00 39.82 4.69
198 199 1.736032 CGATCTGTTCCCAGTTCCGTC 60.736 57.143 0.00 0.00 39.82 4.79
199 200 0.613777 ATCTGTTCCCAGTTCCGTCC 59.386 55.000 0.00 0.00 39.82 4.79
200 201 1.374252 CTGTTCCCAGTTCCGTCCG 60.374 63.158 0.00 0.00 33.80 4.79
201 202 2.741211 GTTCCCAGTTCCGTCCGC 60.741 66.667 0.00 0.00 0.00 5.54
202 203 4.011517 TTCCCAGTTCCGTCCGCC 62.012 66.667 0.00 0.00 0.00 6.13
204 205 4.452733 CCCAGTTCCGTCCGCCTC 62.453 72.222 0.00 0.00 0.00 4.70
205 206 3.382832 CCAGTTCCGTCCGCCTCT 61.383 66.667 0.00 0.00 0.00 3.69
206 207 2.125912 CAGTTCCGTCCGCCTCTG 60.126 66.667 0.00 0.00 0.00 3.35
207 208 2.600769 AGTTCCGTCCGCCTCTGT 60.601 61.111 0.00 0.00 0.00 3.41
208 209 2.207924 AGTTCCGTCCGCCTCTGTT 61.208 57.895 0.00 0.00 0.00 3.16
209 210 1.301479 GTTCCGTCCGCCTCTGTTT 60.301 57.895 0.00 0.00 0.00 2.83
210 211 0.883370 GTTCCGTCCGCCTCTGTTTT 60.883 55.000 0.00 0.00 0.00 2.43
211 212 0.601841 TTCCGTCCGCCTCTGTTTTC 60.602 55.000 0.00 0.00 0.00 2.29
212 213 1.301401 CCGTCCGCCTCTGTTTTCA 60.301 57.895 0.00 0.00 0.00 2.69
213 214 1.566018 CCGTCCGCCTCTGTTTTCAC 61.566 60.000 0.00 0.00 0.00 3.18
214 215 0.600255 CGTCCGCCTCTGTTTTCACT 60.600 55.000 0.00 0.00 0.00 3.41
215 216 1.336517 CGTCCGCCTCTGTTTTCACTA 60.337 52.381 0.00 0.00 0.00 2.74
216 217 2.674177 CGTCCGCCTCTGTTTTCACTAT 60.674 50.000 0.00 0.00 0.00 2.12
217 218 3.335579 GTCCGCCTCTGTTTTCACTATT 58.664 45.455 0.00 0.00 0.00 1.73
218 219 3.751698 GTCCGCCTCTGTTTTCACTATTT 59.248 43.478 0.00 0.00 0.00 1.40
219 220 4.000988 TCCGCCTCTGTTTTCACTATTTC 58.999 43.478 0.00 0.00 0.00 2.17
220 221 3.127030 CCGCCTCTGTTTTCACTATTTCC 59.873 47.826 0.00 0.00 0.00 3.13
221 222 3.127030 CGCCTCTGTTTTCACTATTTCCC 59.873 47.826 0.00 0.00 0.00 3.97
222 223 3.444034 GCCTCTGTTTTCACTATTTCCCC 59.556 47.826 0.00 0.00 0.00 4.81
223 224 4.811063 GCCTCTGTTTTCACTATTTCCCCT 60.811 45.833 0.00 0.00 0.00 4.79
224 225 4.702131 CCTCTGTTTTCACTATTTCCCCTG 59.298 45.833 0.00 0.00 0.00 4.45
225 226 4.079253 TCTGTTTTCACTATTTCCCCTGC 58.921 43.478 0.00 0.00 0.00 4.85
226 227 3.826157 CTGTTTTCACTATTTCCCCTGCA 59.174 43.478 0.00 0.00 0.00 4.41
227 228 4.415596 TGTTTTCACTATTTCCCCTGCAT 58.584 39.130 0.00 0.00 0.00 3.96
228 229 4.462483 TGTTTTCACTATTTCCCCTGCATC 59.538 41.667 0.00 0.00 0.00 3.91
229 230 2.620251 TCACTATTTCCCCTGCATCG 57.380 50.000 0.00 0.00 0.00 3.84
230 231 2.115427 TCACTATTTCCCCTGCATCGA 58.885 47.619 0.00 0.00 0.00 3.59
231 232 2.158957 TCACTATTTCCCCTGCATCGAC 60.159 50.000 0.00 0.00 0.00 4.20
232 233 1.837439 ACTATTTCCCCTGCATCGACA 59.163 47.619 0.00 0.00 0.00 4.35
233 234 2.158900 ACTATTTCCCCTGCATCGACAG 60.159 50.000 0.00 0.00 37.42 3.51
234 235 0.749454 ATTTCCCCTGCATCGACAGC 60.749 55.000 4.81 4.81 36.29 4.40
235 236 2.123248 TTTCCCCTGCATCGACAGCA 62.123 55.000 13.07 13.07 40.19 4.41
236 237 1.913951 TTCCCCTGCATCGACAGCAT 61.914 55.000 13.96 0.00 41.82 3.79
237 238 2.184830 CCCCTGCATCGACAGCATG 61.185 63.158 13.96 11.35 41.82 4.06
238 239 2.184830 CCCTGCATCGACAGCATGG 61.185 63.158 17.37 17.37 43.62 3.66
239 240 1.450848 CCTGCATCGACAGCATGGT 60.451 57.895 13.96 0.00 43.62 3.55
240 241 1.434622 CCTGCATCGACAGCATGGTC 61.435 60.000 13.96 0.00 43.62 4.02
262 263 4.735132 CCGCCGCCGTCAAGAAGA 62.735 66.667 0.00 0.00 0.00 2.87
263 264 2.736995 CGCCGCCGTCAAGAAGAA 60.737 61.111 0.00 0.00 0.00 2.52
264 265 2.730672 CGCCGCCGTCAAGAAGAAG 61.731 63.158 0.00 0.00 0.00 2.85
269 270 2.544726 CCGTCAAGAAGAAGGCCAC 58.455 57.895 5.01 0.00 39.05 5.01
270 271 0.250295 CCGTCAAGAAGAAGGCCACA 60.250 55.000 5.01 0.00 39.05 4.17
271 272 1.151668 CGTCAAGAAGAAGGCCACAG 58.848 55.000 5.01 0.00 0.00 3.66
272 273 1.270305 CGTCAAGAAGAAGGCCACAGA 60.270 52.381 5.01 0.00 0.00 3.41
273 274 2.147150 GTCAAGAAGAAGGCCACAGAC 58.853 52.381 5.01 0.00 0.00 3.51
274 275 1.151668 CAAGAAGAAGGCCACAGACG 58.848 55.000 5.01 0.00 0.00 4.18
275 276 1.048601 AAGAAGAAGGCCACAGACGA 58.951 50.000 5.01 0.00 0.00 4.20
276 277 1.270907 AGAAGAAGGCCACAGACGAT 58.729 50.000 5.01 0.00 0.00 3.73
277 278 1.066573 AGAAGAAGGCCACAGACGATG 60.067 52.381 5.01 0.00 0.00 3.84
278 279 0.674895 AAGAAGGCCACAGACGATGC 60.675 55.000 5.01 0.00 0.00 3.91
279 280 2.045926 AAGGCCACAGACGATGCC 60.046 61.111 5.01 0.00 44.35 4.40
281 282 4.451150 GGCCACAGACGATGCCGA 62.451 66.667 0.00 0.00 39.50 5.54
282 283 2.887568 GCCACAGACGATGCCGAG 60.888 66.667 0.00 0.00 39.50 4.63
283 284 2.202797 CCACAGACGATGCCGAGG 60.203 66.667 0.00 0.00 39.50 4.63
284 285 2.573869 CACAGACGATGCCGAGGT 59.426 61.111 0.00 0.00 39.50 3.85
285 286 1.079819 CACAGACGATGCCGAGGTT 60.080 57.895 0.00 0.00 39.50 3.50
286 287 1.079819 ACAGACGATGCCGAGGTTG 60.080 57.895 0.00 0.00 39.50 3.77
287 288 2.125512 AGACGATGCCGAGGTTGC 60.126 61.111 0.00 0.00 39.50 4.17
288 289 2.125512 GACGATGCCGAGGTTGCT 60.126 61.111 0.00 0.00 39.50 3.91
289 290 2.434884 ACGATGCCGAGGTTGCTG 60.435 61.111 0.00 0.00 39.50 4.41
290 291 3.869272 CGATGCCGAGGTTGCTGC 61.869 66.667 0.00 0.00 38.22 5.25
291 292 3.512516 GATGCCGAGGTTGCTGCC 61.513 66.667 0.00 0.00 0.00 4.85
312 313 2.802414 GCCGACGCGTTTACTCGT 60.802 61.111 15.53 0.00 40.23 4.18
313 314 1.511887 GCCGACGCGTTTACTCGTA 60.512 57.895 15.53 0.00 37.43 3.43
314 315 1.724046 GCCGACGCGTTTACTCGTAC 61.724 60.000 15.53 2.41 37.43 3.67
315 316 0.179215 CCGACGCGTTTACTCGTACT 60.179 55.000 15.53 0.00 37.43 2.73
316 317 1.166950 CGACGCGTTTACTCGTACTC 58.833 55.000 15.53 0.00 37.43 2.59
317 318 1.166950 GACGCGTTTACTCGTACTCG 58.833 55.000 15.53 0.00 37.43 4.18
318 319 0.512952 ACGCGTTTACTCGTACTCGT 59.487 50.000 5.58 0.00 35.37 4.18
319 320 0.896611 CGCGTTTACTCGTACTCGTG 59.103 55.000 0.00 0.00 38.33 4.35
320 321 0.632241 GCGTTTACTCGTACTCGTGC 59.368 55.000 0.00 0.00 38.33 5.34
321 322 1.727213 GCGTTTACTCGTACTCGTGCT 60.727 52.381 0.00 0.00 38.33 4.40
322 323 2.474526 GCGTTTACTCGTACTCGTGCTA 60.475 50.000 0.00 0.00 38.33 3.49
323 324 3.340552 CGTTTACTCGTACTCGTGCTAG 58.659 50.000 0.00 0.00 38.33 3.42
324 325 3.097185 GTTTACTCGTACTCGTGCTAGC 58.903 50.000 8.10 8.10 38.33 3.42
325 326 2.306341 TACTCGTACTCGTGCTAGCT 57.694 50.000 17.23 0.00 38.33 3.32
326 327 0.727970 ACTCGTACTCGTGCTAGCTG 59.272 55.000 17.23 8.75 38.33 4.24
327 328 0.727970 CTCGTACTCGTGCTAGCTGT 59.272 55.000 17.23 11.61 38.33 4.40
328 329 1.931841 CTCGTACTCGTGCTAGCTGTA 59.068 52.381 17.23 10.66 38.33 2.74
329 330 2.544686 CTCGTACTCGTGCTAGCTGTAT 59.455 50.000 17.23 0.33 38.33 2.29
330 331 3.721035 TCGTACTCGTGCTAGCTGTATA 58.279 45.455 17.23 0.00 38.33 1.47
331 332 4.313282 TCGTACTCGTGCTAGCTGTATAT 58.687 43.478 17.23 0.00 38.33 0.86
332 333 4.151867 TCGTACTCGTGCTAGCTGTATATG 59.848 45.833 17.23 7.68 38.33 1.78
333 334 4.083961 CGTACTCGTGCTAGCTGTATATGT 60.084 45.833 17.23 8.13 0.00 2.29
334 335 5.119743 CGTACTCGTGCTAGCTGTATATGTA 59.880 44.000 17.23 7.22 0.00 2.29
335 336 5.359716 ACTCGTGCTAGCTGTATATGTAC 57.640 43.478 17.23 0.93 0.00 2.90
336 337 5.064558 ACTCGTGCTAGCTGTATATGTACT 58.935 41.667 17.23 0.00 0.00 2.73
337 338 5.049336 ACTCGTGCTAGCTGTATATGTACTG 60.049 44.000 17.23 1.92 34.10 2.74
349 350 8.898761 GCTGTATATGTACTGCTCATAGATAGT 58.101 37.037 19.65 0.00 46.32 2.12
354 355 7.831691 ATGTACTGCTCATAGATAGTTCACT 57.168 36.000 0.00 0.00 0.00 3.41
355 356 7.646548 TGTACTGCTCATAGATAGTTCACTT 57.353 36.000 0.00 0.00 0.00 3.16
356 357 8.747538 TGTACTGCTCATAGATAGTTCACTTA 57.252 34.615 0.00 0.00 0.00 2.24
357 358 9.355916 TGTACTGCTCATAGATAGTTCACTTAT 57.644 33.333 0.00 0.00 0.00 1.73
372 373 8.029642 AGTTCACTTATATGTTGTGTACAAGC 57.970 34.615 0.00 0.00 40.89 4.01
373 374 7.878127 AGTTCACTTATATGTTGTGTACAAGCT 59.122 33.333 0.00 0.00 40.89 3.74
374 375 9.146984 GTTCACTTATATGTTGTGTACAAGCTA 57.853 33.333 0.00 0.00 40.89 3.32
375 376 9.713713 TTCACTTATATGTTGTGTACAAGCTAA 57.286 29.630 0.00 0.00 40.89 3.09
376 377 9.884636 TCACTTATATGTTGTGTACAAGCTAAT 57.115 29.630 0.00 0.00 40.89 1.73
381 382 8.908786 ATATGTTGTGTACAAGCTAATATGCT 57.091 30.769 0.00 0.00 46.40 3.79
392 393 5.923733 AGCTAATATGCTTAGGTATCGCT 57.076 39.130 0.00 0.00 40.93 4.93
393 394 5.655488 AGCTAATATGCTTAGGTATCGCTG 58.345 41.667 0.00 0.00 40.93 5.18
394 395 5.186021 AGCTAATATGCTTAGGTATCGCTGT 59.814 40.000 0.00 0.00 40.93 4.40
395 396 5.289675 GCTAATATGCTTAGGTATCGCTGTG 59.710 44.000 0.00 0.00 0.00 3.66
396 397 5.468540 AATATGCTTAGGTATCGCTGTGA 57.531 39.130 0.00 0.00 0.00 3.58
397 398 2.871182 TGCTTAGGTATCGCTGTGAG 57.129 50.000 0.00 0.00 0.00 3.51
398 399 2.375146 TGCTTAGGTATCGCTGTGAGA 58.625 47.619 0.00 0.00 0.00 3.27
399 400 2.959030 TGCTTAGGTATCGCTGTGAGAT 59.041 45.455 0.00 0.00 0.00 2.75
400 401 3.243535 TGCTTAGGTATCGCTGTGAGATG 60.244 47.826 0.00 0.00 0.00 2.90
401 402 3.312828 CTTAGGTATCGCTGTGAGATGC 58.687 50.000 0.00 0.00 0.00 3.91
402 403 1.114627 AGGTATCGCTGTGAGATGCA 58.885 50.000 0.00 0.00 33.32 3.96
403 404 1.690893 AGGTATCGCTGTGAGATGCAT 59.309 47.619 0.00 0.00 33.32 3.96
404 405 2.893489 AGGTATCGCTGTGAGATGCATA 59.107 45.455 0.00 0.00 33.32 3.14
405 406 2.989840 GGTATCGCTGTGAGATGCATAC 59.010 50.000 0.00 0.00 33.32 2.39
406 407 2.160822 ATCGCTGTGAGATGCATACC 57.839 50.000 0.00 0.00 0.00 2.73
407 408 0.823460 TCGCTGTGAGATGCATACCA 59.177 50.000 0.00 0.00 0.00 3.25
408 409 1.413812 TCGCTGTGAGATGCATACCAT 59.586 47.619 0.00 0.00 36.70 3.55
409 410 2.627699 TCGCTGTGAGATGCATACCATA 59.372 45.455 0.00 0.00 33.29 2.74
410 411 3.259123 TCGCTGTGAGATGCATACCATAT 59.741 43.478 0.00 0.00 33.29 1.78
411 412 4.462483 TCGCTGTGAGATGCATACCATATA 59.538 41.667 0.00 0.00 33.29 0.86
412 413 5.127682 TCGCTGTGAGATGCATACCATATAT 59.872 40.000 0.00 0.00 33.29 0.86
413 414 5.233689 CGCTGTGAGATGCATACCATATATG 59.766 44.000 0.00 5.68 33.29 1.78
414 415 6.111382 GCTGTGAGATGCATACCATATATGT 58.889 40.000 11.73 3.03 33.29 2.29
415 416 6.257411 GCTGTGAGATGCATACCATATATGTC 59.743 42.308 11.73 1.11 33.29 3.06
416 417 7.243604 TGTGAGATGCATACCATATATGTCA 57.756 36.000 11.73 2.88 33.29 3.58
417 418 7.854337 TGTGAGATGCATACCATATATGTCAT 58.146 34.615 11.73 6.65 33.29 3.06
418 419 7.767198 TGTGAGATGCATACCATATATGTCATG 59.233 37.037 11.73 13.62 33.29 3.07
419 420 6.764560 TGAGATGCATACCATATATGTCATGC 59.235 38.462 26.67 26.67 40.54 4.06
420 421 6.896883 AGATGCATACCATATATGTCATGCT 58.103 36.000 29.83 21.88 40.66 3.79
421 422 7.344134 AGATGCATACCATATATGTCATGCTT 58.656 34.615 29.83 26.57 40.66 3.91
422 423 8.488668 AGATGCATACCATATATGTCATGCTTA 58.511 33.333 29.83 20.22 40.66 3.09
423 424 7.848223 TGCATACCATATATGTCATGCTTAC 57.152 36.000 29.83 14.93 40.66 2.34
424 425 7.623630 TGCATACCATATATGTCATGCTTACT 58.376 34.615 29.83 2.92 40.66 2.24
425 426 7.550196 TGCATACCATATATGTCATGCTTACTG 59.450 37.037 29.83 10.88 40.66 2.74
426 427 7.550551 GCATACCATATATGTCATGCTTACTGT 59.449 37.037 26.38 12.02 38.74 3.55
427 428 9.440773 CATACCATATATGTCATGCTTACTGTT 57.559 33.333 11.73 0.00 0.00 3.16
430 431 9.273016 ACCATATATGTCATGCTTACTGTTTAC 57.727 33.333 11.73 0.00 0.00 2.01
431 432 9.494271 CCATATATGTCATGCTTACTGTTTACT 57.506 33.333 11.73 0.00 0.00 2.24
433 434 7.700322 ATATGTCATGCTTACTGTTTACTCG 57.300 36.000 0.00 0.00 0.00 4.18
434 435 4.878439 TGTCATGCTTACTGTTTACTCGT 58.122 39.130 0.00 0.00 0.00 4.18
435 436 4.684242 TGTCATGCTTACTGTTTACTCGTG 59.316 41.667 0.00 0.00 0.00 4.35
436 437 4.091509 GTCATGCTTACTGTTTACTCGTGG 59.908 45.833 0.00 0.00 0.00 4.94
437 438 4.021807 TCATGCTTACTGTTTACTCGTGGA 60.022 41.667 0.00 0.00 0.00 4.02
438 439 4.530710 TGCTTACTGTTTACTCGTGGAT 57.469 40.909 0.00 0.00 0.00 3.41
439 440 4.890088 TGCTTACTGTTTACTCGTGGATT 58.110 39.130 0.00 0.00 0.00 3.01
440 441 6.028146 TGCTTACTGTTTACTCGTGGATTA 57.972 37.500 0.00 0.00 0.00 1.75
441 442 6.097356 TGCTTACTGTTTACTCGTGGATTAG 58.903 40.000 0.00 0.00 0.00 1.73
442 443 6.098017 GCTTACTGTTTACTCGTGGATTAGT 58.902 40.000 0.00 0.00 0.00 2.24
443 444 6.253083 GCTTACTGTTTACTCGTGGATTAGTC 59.747 42.308 0.00 0.00 0.00 2.59
444 445 5.979288 ACTGTTTACTCGTGGATTAGTCT 57.021 39.130 0.00 0.00 0.00 3.24
445 446 8.565896 TTACTGTTTACTCGTGGATTAGTCTA 57.434 34.615 0.00 0.00 0.00 2.59
446 447 7.458409 ACTGTTTACTCGTGGATTAGTCTAA 57.542 36.000 0.00 0.00 0.00 2.10
447 448 8.064336 ACTGTTTACTCGTGGATTAGTCTAAT 57.936 34.615 4.71 4.71 0.00 1.73
448 449 8.189460 ACTGTTTACTCGTGGATTAGTCTAATC 58.811 37.037 20.24 20.24 42.94 1.75
449 450 7.191551 TGTTTACTCGTGGATTAGTCTAATCG 58.808 38.462 21.16 13.64 44.24 3.34
450 451 4.832590 ACTCGTGGATTAGTCTAATCGG 57.167 45.455 21.16 14.77 44.24 4.18
451 452 4.458397 ACTCGTGGATTAGTCTAATCGGA 58.542 43.478 21.16 17.24 44.24 4.55
452 453 4.885907 ACTCGTGGATTAGTCTAATCGGAA 59.114 41.667 21.16 10.42 44.24 4.30
453 454 5.359009 ACTCGTGGATTAGTCTAATCGGAAA 59.641 40.000 21.16 9.90 44.24 3.13
454 455 6.127535 ACTCGTGGATTAGTCTAATCGGAAAA 60.128 38.462 21.16 8.84 44.24 2.29
455 456 6.270815 TCGTGGATTAGTCTAATCGGAAAAG 58.729 40.000 21.16 11.88 44.24 2.27
456 457 6.040878 CGTGGATTAGTCTAATCGGAAAAGT 58.959 40.000 21.16 0.00 44.24 2.66
457 458 6.019801 CGTGGATTAGTCTAATCGGAAAAGTG 60.020 42.308 21.16 6.30 44.24 3.16
458 459 7.039882 GTGGATTAGTCTAATCGGAAAAGTGA 58.960 38.462 21.16 0.58 44.24 3.41
459 460 7.711339 GTGGATTAGTCTAATCGGAAAAGTGAT 59.289 37.037 21.16 0.00 44.24 3.06
460 461 8.920174 TGGATTAGTCTAATCGGAAAAGTGATA 58.080 33.333 21.16 0.20 44.24 2.15
461 462 9.760077 GGATTAGTCTAATCGGAAAAGTGATAA 57.240 33.333 21.16 0.00 44.24 1.75
479 480 7.930217 AGTGATAATATTTCCAACAATGACCG 58.070 34.615 0.00 0.00 0.00 4.79
480 481 7.013274 AGTGATAATATTTCCAACAATGACCGG 59.987 37.037 0.00 0.00 0.00 5.28
481 482 4.385358 AATATTTCCAACAATGACCGGC 57.615 40.909 0.00 0.00 0.00 6.13
482 483 0.894835 ATTTCCAACAATGACCGGCC 59.105 50.000 0.00 0.00 0.00 6.13
483 484 0.468214 TTTCCAACAATGACCGGCCA 60.468 50.000 0.00 0.00 0.00 5.36
484 485 1.175983 TTCCAACAATGACCGGCCAC 61.176 55.000 0.00 0.00 0.00 5.01
485 486 1.900981 CCAACAATGACCGGCCACA 60.901 57.895 0.00 0.00 0.00 4.17
486 487 1.459455 CCAACAATGACCGGCCACAA 61.459 55.000 0.00 0.00 0.00 3.33
487 488 0.602562 CAACAATGACCGGCCACAAT 59.397 50.000 0.00 0.00 0.00 2.71
488 489 1.815613 CAACAATGACCGGCCACAATA 59.184 47.619 0.00 0.00 0.00 1.90
489 490 2.426738 CAACAATGACCGGCCACAATAT 59.573 45.455 0.00 0.00 0.00 1.28
490 491 2.297701 ACAATGACCGGCCACAATATC 58.702 47.619 0.00 0.00 0.00 1.63
491 492 2.296792 CAATGACCGGCCACAATATCA 58.703 47.619 0.00 0.00 0.00 2.15
492 493 1.967319 ATGACCGGCCACAATATCAC 58.033 50.000 0.00 0.00 0.00 3.06
493 494 0.908910 TGACCGGCCACAATATCACT 59.091 50.000 0.00 0.00 0.00 3.41
494 495 1.134521 TGACCGGCCACAATATCACTC 60.135 52.381 0.00 0.00 0.00 3.51
495 496 1.139058 GACCGGCCACAATATCACTCT 59.861 52.381 0.00 0.00 0.00 3.24
496 497 1.559682 ACCGGCCACAATATCACTCTT 59.440 47.619 0.00 0.00 0.00 2.85
497 498 2.026262 ACCGGCCACAATATCACTCTTT 60.026 45.455 0.00 0.00 0.00 2.52
498 499 2.355756 CCGGCCACAATATCACTCTTTG 59.644 50.000 2.24 0.00 0.00 2.77
499 500 2.223340 CGGCCACAATATCACTCTTTGC 60.223 50.000 2.24 0.00 0.00 3.68
500 501 3.019564 GGCCACAATATCACTCTTTGCT 58.980 45.455 0.00 0.00 0.00 3.91
501 502 3.181493 GGCCACAATATCACTCTTTGCTG 60.181 47.826 0.00 0.00 0.00 4.41
502 503 3.691118 GCCACAATATCACTCTTTGCTGA 59.309 43.478 0.00 0.00 0.00 4.26
503 504 4.337555 GCCACAATATCACTCTTTGCTGAT 59.662 41.667 0.00 0.00 0.00 2.90
504 505 5.163581 GCCACAATATCACTCTTTGCTGATT 60.164 40.000 0.00 0.00 0.00 2.57
505 506 6.038603 GCCACAATATCACTCTTTGCTGATTA 59.961 38.462 0.00 0.00 0.00 1.75
506 507 7.415541 GCCACAATATCACTCTTTGCTGATTAA 60.416 37.037 0.00 0.00 0.00 1.40
507 508 8.627403 CCACAATATCACTCTTTGCTGATTAAT 58.373 33.333 0.00 0.00 0.00 1.40
513 514 7.558161 TCACTCTTTGCTGATTAATATGGTG 57.442 36.000 0.00 0.00 0.00 4.17
514 515 7.112122 TCACTCTTTGCTGATTAATATGGTGT 58.888 34.615 0.00 0.00 0.00 4.16
515 516 7.280876 TCACTCTTTGCTGATTAATATGGTGTC 59.719 37.037 0.00 0.00 0.00 3.67
516 517 7.281774 CACTCTTTGCTGATTAATATGGTGTCT 59.718 37.037 0.00 0.00 0.00 3.41
517 518 7.281774 ACTCTTTGCTGATTAATATGGTGTCTG 59.718 37.037 0.00 0.00 0.00 3.51
518 519 5.756195 TTGCTGATTAATATGGTGTCTGC 57.244 39.130 0.00 0.00 35.27 4.26
519 520 5.039920 TGCTGATTAATATGGTGTCTGCT 57.960 39.130 0.00 0.00 35.59 4.24
520 521 5.439721 TGCTGATTAATATGGTGTCTGCTT 58.560 37.500 0.00 0.00 35.59 3.91
521 522 5.887598 TGCTGATTAATATGGTGTCTGCTTT 59.112 36.000 0.00 0.00 35.59 3.51
522 523 7.053498 TGCTGATTAATATGGTGTCTGCTTTA 58.947 34.615 0.00 0.00 35.59 1.85
523 524 7.227314 TGCTGATTAATATGGTGTCTGCTTTAG 59.773 37.037 0.00 0.00 35.59 1.85
524 525 7.308229 GCTGATTAATATGGTGTCTGCTTTAGG 60.308 40.741 0.00 0.00 32.97 2.69
525 526 6.998074 TGATTAATATGGTGTCTGCTTTAGGG 59.002 38.462 0.00 0.00 0.00 3.53
526 527 6.569127 TTAATATGGTGTCTGCTTTAGGGA 57.431 37.500 0.00 0.00 0.00 4.20
527 528 2.789409 ATGGTGTCTGCTTTAGGGAC 57.211 50.000 0.00 0.00 0.00 4.46
528 529 0.320374 TGGTGTCTGCTTTAGGGACG 59.680 55.000 0.00 0.00 33.21 4.79
529 530 0.606604 GGTGTCTGCTTTAGGGACGA 59.393 55.000 0.00 0.00 33.21 4.20
530 531 1.404315 GGTGTCTGCTTTAGGGACGAG 60.404 57.143 0.00 0.00 33.21 4.18
531 532 0.246635 TGTCTGCTTTAGGGACGAGC 59.753 55.000 0.00 0.00 36.95 5.03
532 533 0.802607 GTCTGCTTTAGGGACGAGCG 60.803 60.000 0.00 0.00 39.23 5.03
533 534 1.215647 CTGCTTTAGGGACGAGCGT 59.784 57.895 0.00 0.00 39.23 5.07
534 535 0.389948 CTGCTTTAGGGACGAGCGTT 60.390 55.000 0.00 0.00 39.23 4.84
535 536 0.669318 TGCTTTAGGGACGAGCGTTG 60.669 55.000 0.00 0.00 39.23 4.10
536 537 0.389426 GCTTTAGGGACGAGCGTTGA 60.389 55.000 0.00 0.00 0.00 3.18
537 538 1.938016 GCTTTAGGGACGAGCGTTGAA 60.938 52.381 0.00 0.00 0.00 2.69
538 539 2.618053 CTTTAGGGACGAGCGTTGAAT 58.382 47.619 0.00 0.00 0.00 2.57
539 540 2.004583 TTAGGGACGAGCGTTGAATG 57.995 50.000 0.00 0.00 0.00 2.67
540 541 0.459585 TAGGGACGAGCGTTGAATGC 60.460 55.000 0.07 0.07 0.00 3.56
541 542 2.750888 GGGACGAGCGTTGAATGCC 61.751 63.158 5.64 0.00 0.00 4.40
542 543 2.750888 GGACGAGCGTTGAATGCCC 61.751 63.158 5.64 0.00 0.00 5.36
543 544 1.741770 GACGAGCGTTGAATGCCCT 60.742 57.895 5.64 0.00 0.00 5.19
544 545 0.459585 GACGAGCGTTGAATGCCCTA 60.460 55.000 5.64 0.00 0.00 3.53
545 546 0.036765 ACGAGCGTTGAATGCCCTAA 60.037 50.000 5.64 0.00 0.00 2.69
546 547 1.299541 CGAGCGTTGAATGCCCTAAT 58.700 50.000 5.64 0.00 0.00 1.73
547 548 1.670811 CGAGCGTTGAATGCCCTAATT 59.329 47.619 5.64 0.00 0.00 1.40
548 549 2.097466 CGAGCGTTGAATGCCCTAATTT 59.903 45.455 5.64 0.00 0.00 1.82
549 550 3.438360 GAGCGTTGAATGCCCTAATTTG 58.562 45.455 5.64 0.00 0.00 2.32
550 551 3.088532 AGCGTTGAATGCCCTAATTTGA 58.911 40.909 5.64 0.00 0.00 2.69
551 552 3.701040 AGCGTTGAATGCCCTAATTTGAT 59.299 39.130 5.64 0.00 0.00 2.57
552 553 4.160252 AGCGTTGAATGCCCTAATTTGATT 59.840 37.500 5.64 0.00 0.00 2.57
553 554 4.869861 GCGTTGAATGCCCTAATTTGATTT 59.130 37.500 0.00 0.00 0.00 2.17
554 555 6.039616 GCGTTGAATGCCCTAATTTGATTTA 58.960 36.000 0.00 0.00 0.00 1.40
555 556 6.701400 GCGTTGAATGCCCTAATTTGATTTAT 59.299 34.615 0.00 0.00 0.00 1.40
556 557 7.865385 GCGTTGAATGCCCTAATTTGATTTATA 59.135 33.333 0.00 0.00 0.00 0.98
557 558 9.180678 CGTTGAATGCCCTAATTTGATTTATAC 57.819 33.333 0.00 0.00 0.00 1.47
560 561 9.420118 TGAATGCCCTAATTTGATTTATACACT 57.580 29.630 0.00 0.00 0.00 3.55
588 589 9.770097 ATCATTAATATCTTCAATCACTCACGT 57.230 29.630 0.00 0.00 0.00 4.49
606 607 6.535865 ACTCACGTATTTATATCCGTTGCAAA 59.464 34.615 0.00 0.00 0.00 3.68
621 622 0.457681 GCAAACGCACGGGCATTTAT 60.458 50.000 11.77 0.00 32.29 1.40
627 628 1.102978 GCACGGGCATTTATCCAGTT 58.897 50.000 3.77 0.00 40.72 3.16
628 629 2.294074 GCACGGGCATTTATCCAGTTA 58.706 47.619 3.77 0.00 40.72 2.24
648 649 7.417612 CAGTTATACGAATAAAGGCTGCAAAT 58.582 34.615 0.50 0.00 29.41 2.32
649 650 8.556194 CAGTTATACGAATAAAGGCTGCAAATA 58.444 33.333 0.50 0.00 29.41 1.40
650 651 8.557029 AGTTATACGAATAAAGGCTGCAAATAC 58.443 33.333 0.50 0.00 29.41 1.89
690 691 2.185350 CGGAGGAAGATGCTGCGT 59.815 61.111 4.72 0.00 43.86 5.24
774 777 0.109964 CTAGAGAGGCAGCGCGTATC 60.110 60.000 8.43 8.93 35.33 2.24
775 778 0.818040 TAGAGAGGCAGCGCGTATCA 60.818 55.000 8.43 4.39 37.17 2.15
776 779 1.946650 GAGAGGCAGCGCGTATCAC 60.947 63.158 8.43 0.00 35.23 3.06
777 780 3.323136 GAGGCAGCGCGTATCACG 61.323 66.667 8.43 0.00 45.88 4.35
778 781 3.751401 GAGGCAGCGCGTATCACGA 62.751 63.158 8.43 0.00 46.05 4.35
779 782 3.323136 GGCAGCGCGTATCACGAG 61.323 66.667 8.43 0.00 46.05 4.18
780 783 2.579787 GCAGCGCGTATCACGAGT 60.580 61.111 8.43 0.00 46.05 4.18
845 848 1.202268 GCCAAGACTGATTGATGCTGC 60.202 52.381 0.00 0.00 31.55 5.25
936 939 0.983378 CGTTCCCCATCTCCTTCCCT 60.983 60.000 0.00 0.00 0.00 4.20
1004 1007 2.856988 ACCGTCCCCACCCATGTT 60.857 61.111 0.00 0.00 0.00 2.71
1558 1561 3.057736 CGTCCAGTACCCCTTCATATACG 60.058 52.174 0.00 0.00 0.00 3.06
1693 1696 1.872679 GGCGTCGTCTTCGGATGTC 60.873 63.158 0.00 0.00 37.69 3.06
1704 1707 0.389817 TCGGATGTCTCGCCTTTGTG 60.390 55.000 0.00 0.00 0.00 3.33
1995 1998 4.314440 AAGAACTGCTCGGCGGCA 62.314 61.111 19.17 19.17 38.71 5.69
2733 2736 2.440980 GATTCAGCACCAGGGCCC 60.441 66.667 16.46 16.46 0.00 5.80
2889 2892 2.039216 TGCTACACCGGAATCTCCAAAA 59.961 45.455 9.46 0.00 35.91 2.44
2987 2990 0.883153 TTACACATTGCAGGCAGCTG 59.117 50.000 10.11 10.11 45.94 4.24
3038 3041 9.462174 GCTCTCATAGGAAATATATGATTCTCG 57.538 37.037 0.00 0.00 38.59 4.04
3062 3065 6.466413 CGTGTGACAGTTCAATTCGTTTAAAA 59.534 34.615 0.00 0.00 31.90 1.52
3063 3066 7.510896 CGTGTGACAGTTCAATTCGTTTAAAAC 60.511 37.037 0.00 0.00 31.90 2.43
3064 3067 6.466413 TGTGACAGTTCAATTCGTTTAAAACG 59.534 34.615 0.00 0.00 44.34 3.60
3124 3127 7.912773 GCTTAGTAATTGATGGAAGCTTCTTTC 59.087 37.037 25.05 20.47 37.05 2.62
3125 3128 6.765915 AGTAATTGATGGAAGCTTCTTTCC 57.234 37.500 25.05 10.81 45.59 3.13
3126 3129 6.488715 AGTAATTGATGGAAGCTTCTTTCCT 58.511 36.000 25.05 11.22 45.59 3.36
3127 3130 6.950619 AGTAATTGATGGAAGCTTCTTTCCTT 59.049 34.615 25.05 17.57 45.59 3.36
3128 3131 6.676990 AATTGATGGAAGCTTCTTTCCTTT 57.323 33.333 25.05 14.13 45.59 3.11
3129 3132 5.712152 TTGATGGAAGCTTCTTTCCTTTC 57.288 39.130 25.05 11.39 45.59 2.62
3130 3133 4.990526 TGATGGAAGCTTCTTTCCTTTCT 58.009 39.130 25.05 1.00 45.59 2.52
3131 3134 5.388654 TGATGGAAGCTTCTTTCCTTTCTT 58.611 37.500 25.05 4.98 45.59 2.52
3134 3137 6.149129 TGGAAGCTTCTTTCCTTTCTTTTC 57.851 37.500 25.05 4.70 45.59 2.29
3152 3155 9.971922 TTTCTTTTCTTTGAGATTTTGGAGATC 57.028 29.630 0.00 0.00 0.00 2.75
3218 3307 8.445275 TTGTTACTTGAAGAAGCTATTTGTGA 57.555 30.769 0.00 0.00 31.68 3.58
3223 3312 6.373774 ACTTGAAGAAGCTATTTGTGATCTGG 59.626 38.462 0.00 0.00 31.68 3.86
3239 3328 1.982958 TCTGGGGTTCAAAGGTACCTC 59.017 52.381 16.64 1.36 35.60 3.85
3285 3374 3.541632 TCAGTTGGAAGAACAAGGTGAC 58.458 45.455 0.00 0.00 0.00 3.67
3298 3387 2.878406 CAAGGTGACGTTCCACTGATTT 59.122 45.455 12.10 0.00 37.24 2.17
3403 3492 5.013599 AGGATTTGGCTAAAGAGAGAGTTGT 59.986 40.000 0.65 0.00 0.00 3.32
3406 3495 4.008074 TGGCTAAAGAGAGAGTTGTTGG 57.992 45.455 0.00 0.00 0.00 3.77
3499 3588 2.274542 TGTGGTGGGTATTGATCTGGT 58.725 47.619 0.00 0.00 0.00 4.00
3520 3609 5.476599 TGGTTTGTTCTATTGAGATGGTTGG 59.523 40.000 0.00 0.00 0.00 3.77
3531 3620 4.608269 TGAGATGGTTGGGCATAATTTGA 58.392 39.130 0.00 0.00 0.00 2.69
3628 3717 1.832366 GAACCTAGTTCTCCAGGTCCC 59.168 57.143 0.23 0.00 44.55 4.46
3629 3718 0.042881 ACCTAGTTCTCCAGGTCCCC 59.957 60.000 0.00 0.00 41.44 4.81
3688 3777 9.006839 TGTTCTGATAATGATCATTTAGATGCC 57.993 33.333 25.26 15.62 41.33 4.40
3706 3795 4.280436 TGCCGAAGTTGAAGAGGATTAA 57.720 40.909 0.00 0.00 0.00 1.40
3707 3796 4.843728 TGCCGAAGTTGAAGAGGATTAAT 58.156 39.130 0.00 0.00 0.00 1.40
3882 6003 4.530161 TGTTTTGGAATGTAAGGGGGATTG 59.470 41.667 0.00 0.00 0.00 2.67
3895 6016 3.173151 GGGGGATTGGTCAAGATGTTTT 58.827 45.455 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.745837 ATAGATGACGACTAGGTTACGC 57.254 45.455 0.00 0.00 0.00 4.42
3 4 6.916932 GGAACAATAGATGACGACTAGGTTAC 59.083 42.308 0.00 0.00 0.00 2.50
4 5 6.832384 AGGAACAATAGATGACGACTAGGTTA 59.168 38.462 0.00 0.00 0.00 2.85
6 7 5.202004 AGGAACAATAGATGACGACTAGGT 58.798 41.667 0.00 0.00 0.00 3.08
7 8 5.776173 AGGAACAATAGATGACGACTAGG 57.224 43.478 0.00 0.00 0.00 3.02
8 9 7.932335 AGTAAGGAACAATAGATGACGACTAG 58.068 38.462 0.00 0.00 0.00 2.57
9 10 7.774157 AGAGTAAGGAACAATAGATGACGACTA 59.226 37.037 0.00 0.00 0.00 2.59
10 11 6.603997 AGAGTAAGGAACAATAGATGACGACT 59.396 38.462 0.00 0.00 0.00 4.18
11 12 6.693545 CAGAGTAAGGAACAATAGATGACGAC 59.306 42.308 0.00 0.00 0.00 4.34
12 13 6.377429 ACAGAGTAAGGAACAATAGATGACGA 59.623 38.462 0.00 0.00 0.00 4.20
13 14 6.473778 CACAGAGTAAGGAACAATAGATGACG 59.526 42.308 0.00 0.00 0.00 4.35
14 15 6.256757 GCACAGAGTAAGGAACAATAGATGAC 59.743 42.308 0.00 0.00 0.00 3.06
15 16 6.155221 AGCACAGAGTAAGGAACAATAGATGA 59.845 38.462 0.00 0.00 0.00 2.92
16 17 6.257411 CAGCACAGAGTAAGGAACAATAGATG 59.743 42.308 0.00 0.00 0.00 2.90
17 18 6.344500 CAGCACAGAGTAAGGAACAATAGAT 58.656 40.000 0.00 0.00 0.00 1.98
18 19 5.724328 CAGCACAGAGTAAGGAACAATAGA 58.276 41.667 0.00 0.00 0.00 1.98
19 20 4.331168 GCAGCACAGAGTAAGGAACAATAG 59.669 45.833 0.00 0.00 0.00 1.73
20 21 4.253685 GCAGCACAGAGTAAGGAACAATA 58.746 43.478 0.00 0.00 0.00 1.90
21 22 3.077359 GCAGCACAGAGTAAGGAACAAT 58.923 45.455 0.00 0.00 0.00 2.71
22 23 2.494059 GCAGCACAGAGTAAGGAACAA 58.506 47.619 0.00 0.00 0.00 2.83
23 24 1.270839 GGCAGCACAGAGTAAGGAACA 60.271 52.381 0.00 0.00 0.00 3.18
24 25 1.002544 AGGCAGCACAGAGTAAGGAAC 59.997 52.381 0.00 0.00 0.00 3.62
25 26 1.276421 GAGGCAGCACAGAGTAAGGAA 59.724 52.381 0.00 0.00 0.00 3.36
26 27 0.898320 GAGGCAGCACAGAGTAAGGA 59.102 55.000 0.00 0.00 0.00 3.36
27 28 0.107945 GGAGGCAGCACAGAGTAAGG 60.108 60.000 0.00 0.00 0.00 2.69
28 29 0.459237 CGGAGGCAGCACAGAGTAAG 60.459 60.000 0.00 0.00 0.00 2.34
29 30 0.898326 TCGGAGGCAGCACAGAGTAA 60.898 55.000 0.00 0.00 0.00 2.24
30 31 1.304134 TCGGAGGCAGCACAGAGTA 60.304 57.895 0.00 0.00 0.00 2.59
31 32 2.601666 TCGGAGGCAGCACAGAGT 60.602 61.111 0.00 0.00 0.00 3.24
32 33 2.125753 GTCGGAGGCAGCACAGAG 60.126 66.667 0.00 0.00 0.00 3.35
33 34 4.056125 CGTCGGAGGCAGCACAGA 62.056 66.667 0.00 0.00 0.00 3.41
34 35 3.362399 ATCGTCGGAGGCAGCACAG 62.362 63.158 0.00 0.00 0.00 3.66
35 36 3.356639 GATCGTCGGAGGCAGCACA 62.357 63.158 0.00 0.00 0.00 4.57
36 37 2.583593 GATCGTCGGAGGCAGCAC 60.584 66.667 0.00 0.00 0.00 4.40
37 38 3.838271 GGATCGTCGGAGGCAGCA 61.838 66.667 0.00 0.00 0.00 4.41
38 39 4.593864 GGGATCGTCGGAGGCAGC 62.594 72.222 0.00 0.00 0.00 5.25
39 40 2.032860 AATGGGATCGTCGGAGGCAG 62.033 60.000 0.00 0.00 0.00 4.85
40 41 2.028125 GAATGGGATCGTCGGAGGCA 62.028 60.000 0.00 0.00 0.00 4.75
41 42 1.301009 GAATGGGATCGTCGGAGGC 60.301 63.158 0.00 0.00 0.00 4.70
42 43 1.367840 GGAATGGGATCGTCGGAGG 59.632 63.158 0.00 0.00 0.00 4.30
43 44 1.007271 CGGAATGGGATCGTCGGAG 60.007 63.158 0.00 0.00 0.00 4.63
44 45 0.826256 ATCGGAATGGGATCGTCGGA 60.826 55.000 0.00 0.00 0.00 4.55
45 46 0.667487 CATCGGAATGGGATCGTCGG 60.667 60.000 0.00 0.00 0.00 4.79
46 47 0.313987 TCATCGGAATGGGATCGTCG 59.686 55.000 0.00 0.00 33.42 5.12
47 48 1.605712 GGTCATCGGAATGGGATCGTC 60.606 57.143 0.00 0.00 33.42 4.20
48 49 0.393077 GGTCATCGGAATGGGATCGT 59.607 55.000 0.00 0.00 33.42 3.73
49 50 0.667487 CGGTCATCGGAATGGGATCG 60.667 60.000 0.00 0.00 33.42 3.69
50 51 0.951040 GCGGTCATCGGAATGGGATC 60.951 60.000 0.00 0.00 39.69 3.36
51 52 1.071471 GCGGTCATCGGAATGGGAT 59.929 57.895 0.00 0.00 39.69 3.85
52 53 2.504032 GCGGTCATCGGAATGGGA 59.496 61.111 0.00 0.00 39.69 4.37
53 54 2.967076 CGCGGTCATCGGAATGGG 60.967 66.667 0.00 0.00 39.69 4.00
54 55 2.202878 ACGCGGTCATCGGAATGG 60.203 61.111 12.47 0.00 39.69 3.16
55 56 3.005898 CACGCGGTCATCGGAATG 58.994 61.111 12.47 0.00 39.69 2.67
56 57 2.890474 GCACGCGGTCATCGGAAT 60.890 61.111 12.47 0.00 39.69 3.01
57 58 4.365505 TGCACGCGGTCATCGGAA 62.366 61.111 12.47 0.00 39.69 4.30
67 68 3.353114 CTGATCAACCGTGCACGCG 62.353 63.158 33.17 26.37 38.18 6.01
68 69 2.476051 CTGATCAACCGTGCACGC 59.524 61.111 33.17 18.62 38.18 5.34
69 70 0.948623 TTCCTGATCAACCGTGCACG 60.949 55.000 31.77 31.77 39.44 5.34
70 71 1.197721 CTTTCCTGATCAACCGTGCAC 59.802 52.381 6.82 6.82 0.00 4.57
71 72 1.202758 ACTTTCCTGATCAACCGTGCA 60.203 47.619 0.00 0.00 0.00 4.57
72 73 1.523758 ACTTTCCTGATCAACCGTGC 58.476 50.000 0.00 0.00 0.00 5.34
73 74 4.188247 TCTACTTTCCTGATCAACCGTG 57.812 45.455 0.00 0.00 0.00 4.94
74 75 4.759782 CATCTACTTTCCTGATCAACCGT 58.240 43.478 0.00 0.00 0.00 4.83
75 76 3.557595 GCATCTACTTTCCTGATCAACCG 59.442 47.826 0.00 0.00 0.00 4.44
76 77 3.879892 GGCATCTACTTTCCTGATCAACC 59.120 47.826 0.00 0.00 0.00 3.77
77 78 4.775236 AGGCATCTACTTTCCTGATCAAC 58.225 43.478 0.00 0.00 0.00 3.18
78 79 4.141620 GGAGGCATCTACTTTCCTGATCAA 60.142 45.833 0.00 0.00 0.00 2.57
79 80 3.389329 GGAGGCATCTACTTTCCTGATCA 59.611 47.826 0.00 0.00 0.00 2.92
80 81 3.553922 CGGAGGCATCTACTTTCCTGATC 60.554 52.174 0.00 0.00 0.00 2.92
81 82 2.366916 CGGAGGCATCTACTTTCCTGAT 59.633 50.000 0.00 0.00 0.00 2.90
82 83 1.757118 CGGAGGCATCTACTTTCCTGA 59.243 52.381 0.00 0.00 0.00 3.86
83 84 1.202580 CCGGAGGCATCTACTTTCCTG 60.203 57.143 0.00 0.00 46.14 3.86
84 85 1.123928 CCGGAGGCATCTACTTTCCT 58.876 55.000 0.00 0.00 46.14 3.36
85 86 3.688553 CCGGAGGCATCTACTTTCC 57.311 57.895 0.00 0.00 46.14 3.13
102 103 2.240162 ATCTCGAACGGCAGGGTTCC 62.240 60.000 8.39 0.00 42.57 3.62
103 104 0.806492 GATCTCGAACGGCAGGGTTC 60.806 60.000 4.89 4.89 42.21 3.62
104 105 1.218316 GATCTCGAACGGCAGGGTT 59.782 57.895 0.00 0.00 0.00 4.11
105 106 2.722201 GGATCTCGAACGGCAGGGT 61.722 63.158 0.00 0.00 0.00 4.34
106 107 2.107141 GGATCTCGAACGGCAGGG 59.893 66.667 0.00 0.00 0.00 4.45
107 108 1.227089 CAGGATCTCGAACGGCAGG 60.227 63.158 0.00 0.00 0.00 4.85
108 109 0.526524 GACAGGATCTCGAACGGCAG 60.527 60.000 0.00 0.00 0.00 4.85
109 110 1.511305 GACAGGATCTCGAACGGCA 59.489 57.895 0.00 0.00 0.00 5.69
110 111 1.227002 GGACAGGATCTCGAACGGC 60.227 63.158 0.00 0.00 0.00 5.68
111 112 1.064296 CGGACAGGATCTCGAACGG 59.936 63.158 0.00 0.00 0.00 4.44
112 113 0.028242 CTCGGACAGGATCTCGAACG 59.972 60.000 0.00 0.00 32.10 3.95
113 114 1.332375 CTCTCGGACAGGATCTCGAAC 59.668 57.143 0.00 0.00 32.10 3.95
114 115 1.209747 TCTCTCGGACAGGATCTCGAA 59.790 52.381 0.00 0.00 32.10 3.71
115 116 0.831307 TCTCTCGGACAGGATCTCGA 59.169 55.000 0.00 0.00 0.00 4.04
116 117 1.332375 GTTCTCTCGGACAGGATCTCG 59.668 57.143 0.00 0.00 0.00 4.04
117 118 1.332375 CGTTCTCTCGGACAGGATCTC 59.668 57.143 0.00 0.00 0.00 2.75
118 119 1.384525 CGTTCTCTCGGACAGGATCT 58.615 55.000 0.00 0.00 0.00 2.75
119 120 3.928343 CGTTCTCTCGGACAGGATC 57.072 57.895 0.00 0.00 0.00 3.36
128 129 2.295253 ACCTTATTGCCGTTCTCTCG 57.705 50.000 0.00 0.00 0.00 4.04
129 130 5.154222 CAAAAACCTTATTGCCGTTCTCTC 58.846 41.667 0.00 0.00 0.00 3.20
130 131 4.022329 CCAAAAACCTTATTGCCGTTCTCT 60.022 41.667 0.00 0.00 0.00 3.10
131 132 4.234574 CCAAAAACCTTATTGCCGTTCTC 58.765 43.478 0.00 0.00 0.00 2.87
132 133 3.006430 CCCAAAAACCTTATTGCCGTTCT 59.994 43.478 0.00 0.00 0.00 3.01
133 134 3.322369 CCCAAAAACCTTATTGCCGTTC 58.678 45.455 0.00 0.00 0.00 3.95
134 135 2.037902 CCCCAAAAACCTTATTGCCGTT 59.962 45.455 0.00 0.00 0.00 4.44
135 136 1.621317 CCCCAAAAACCTTATTGCCGT 59.379 47.619 0.00 0.00 0.00 5.68
136 137 1.896465 TCCCCAAAAACCTTATTGCCG 59.104 47.619 0.00 0.00 0.00 5.69
137 138 2.354704 GCTCCCCAAAAACCTTATTGCC 60.355 50.000 0.00 0.00 0.00 4.52
138 139 2.673893 CGCTCCCCAAAAACCTTATTGC 60.674 50.000 0.00 0.00 0.00 3.56
139 140 2.560981 ACGCTCCCCAAAAACCTTATTG 59.439 45.455 0.00 0.00 0.00 1.90
140 141 2.823747 GACGCTCCCCAAAAACCTTATT 59.176 45.455 0.00 0.00 0.00 1.40
141 142 2.041216 AGACGCTCCCCAAAAACCTTAT 59.959 45.455 0.00 0.00 0.00 1.73
142 143 1.422402 AGACGCTCCCCAAAAACCTTA 59.578 47.619 0.00 0.00 0.00 2.69
143 144 0.185175 AGACGCTCCCCAAAAACCTT 59.815 50.000 0.00 0.00 0.00 3.50
144 145 0.250770 GAGACGCTCCCCAAAAACCT 60.251 55.000 0.00 0.00 0.00 3.50
145 146 0.536460 TGAGACGCTCCCCAAAAACC 60.536 55.000 4.73 0.00 0.00 3.27
146 147 1.534729 ATGAGACGCTCCCCAAAAAC 58.465 50.000 4.73 0.00 0.00 2.43
147 148 1.885887 CAATGAGACGCTCCCCAAAAA 59.114 47.619 4.73 0.00 0.00 1.94
148 149 1.533625 CAATGAGACGCTCCCCAAAA 58.466 50.000 4.73 0.00 0.00 2.44
149 150 0.960364 GCAATGAGACGCTCCCCAAA 60.960 55.000 4.73 0.00 0.00 3.28
150 151 1.377202 GCAATGAGACGCTCCCCAA 60.377 57.895 4.73 0.00 0.00 4.12
151 152 2.268920 GCAATGAGACGCTCCCCA 59.731 61.111 4.73 0.00 0.00 4.96
152 153 2.892425 CGCAATGAGACGCTCCCC 60.892 66.667 4.73 0.00 0.00 4.81
153 154 2.167861 GTCGCAATGAGACGCTCCC 61.168 63.158 0.65 0.00 0.00 4.30
154 155 1.153745 AGTCGCAATGAGACGCTCC 60.154 57.895 11.24 0.00 42.97 4.70
155 156 1.994467 CAGTCGCAATGAGACGCTC 59.006 57.895 11.24 0.58 42.97 5.03
156 157 2.097038 GCAGTCGCAATGAGACGCT 61.097 57.895 19.46 1.02 42.97 5.07
157 158 2.018582 GAGCAGTCGCAATGAGACGC 62.019 60.000 19.25 19.25 42.97 5.19
158 159 0.457509 AGAGCAGTCGCAATGAGACG 60.458 55.000 11.24 7.80 42.97 4.18
159 160 1.276415 GAGAGCAGTCGCAATGAGAC 58.724 55.000 9.11 9.11 42.27 3.36
160 161 0.179153 CGAGAGCAGTCGCAATGAGA 60.179 55.000 0.00 0.00 42.27 3.27
161 162 0.179153 TCGAGAGCAGTCGCAATGAG 60.179 55.000 3.00 0.00 42.27 2.90
162 163 0.457443 ATCGAGAGCAGTCGCAATGA 59.543 50.000 3.00 0.00 42.27 2.57
163 164 0.851495 GATCGAGAGCAGTCGCAATG 59.149 55.000 3.00 0.00 42.27 2.82
164 165 0.743688 AGATCGAGAGCAGTCGCAAT 59.256 50.000 3.00 0.00 42.27 3.56
165 166 0.179153 CAGATCGAGAGCAGTCGCAA 60.179 55.000 3.00 0.00 42.27 4.85
166 167 1.308783 ACAGATCGAGAGCAGTCGCA 61.309 55.000 3.00 0.00 42.27 5.10
167 168 0.179150 AACAGATCGAGAGCAGTCGC 60.179 55.000 3.00 0.00 39.90 5.19
168 169 1.532921 GGAACAGATCGAGAGCAGTCG 60.533 57.143 1.48 1.48 41.51 4.18
169 170 1.202359 GGGAACAGATCGAGAGCAGTC 60.202 57.143 0.00 0.00 0.00 3.51
170 171 0.820871 GGGAACAGATCGAGAGCAGT 59.179 55.000 0.00 0.00 0.00 4.40
171 172 0.820226 TGGGAACAGATCGAGAGCAG 59.180 55.000 0.00 0.00 35.01 4.24
172 173 2.976099 TGGGAACAGATCGAGAGCA 58.024 52.632 0.00 0.00 35.01 4.26
183 184 2.738480 CGGACGGAACTGGGAACA 59.262 61.111 0.00 0.00 39.59 3.18
184 185 2.741211 GCGGACGGAACTGGGAAC 60.741 66.667 0.00 0.00 0.00 3.62
185 186 4.011517 GGCGGACGGAACTGGGAA 62.012 66.667 0.00 0.00 0.00 3.97
187 188 4.452733 GAGGCGGACGGAACTGGG 62.453 72.222 0.00 0.00 0.00 4.45
188 189 3.382832 AGAGGCGGACGGAACTGG 61.383 66.667 0.00 0.00 0.00 4.00
189 190 2.125912 CAGAGGCGGACGGAACTG 60.126 66.667 0.00 0.00 0.00 3.16
190 191 1.755393 AAACAGAGGCGGACGGAACT 61.755 55.000 0.00 0.00 0.00 3.01
191 192 0.883370 AAAACAGAGGCGGACGGAAC 60.883 55.000 0.00 0.00 0.00 3.62
192 193 0.601841 GAAAACAGAGGCGGACGGAA 60.602 55.000 0.00 0.00 0.00 4.30
193 194 1.005394 GAAAACAGAGGCGGACGGA 60.005 57.895 0.00 0.00 0.00 4.69
194 195 1.301401 TGAAAACAGAGGCGGACGG 60.301 57.895 0.00 0.00 0.00 4.79
195 196 0.600255 AGTGAAAACAGAGGCGGACG 60.600 55.000 0.00 0.00 0.00 4.79
196 197 2.450609 TAGTGAAAACAGAGGCGGAC 57.549 50.000 0.00 0.00 0.00 4.79
197 198 3.695830 AATAGTGAAAACAGAGGCGGA 57.304 42.857 0.00 0.00 0.00 5.54
198 199 3.127030 GGAAATAGTGAAAACAGAGGCGG 59.873 47.826 0.00 0.00 0.00 6.13
199 200 3.127030 GGGAAATAGTGAAAACAGAGGCG 59.873 47.826 0.00 0.00 0.00 5.52
200 201 3.444034 GGGGAAATAGTGAAAACAGAGGC 59.556 47.826 0.00 0.00 0.00 4.70
201 202 4.702131 CAGGGGAAATAGTGAAAACAGAGG 59.298 45.833 0.00 0.00 0.00 3.69
202 203 4.156739 GCAGGGGAAATAGTGAAAACAGAG 59.843 45.833 0.00 0.00 0.00 3.35
203 204 4.079253 GCAGGGGAAATAGTGAAAACAGA 58.921 43.478 0.00 0.00 0.00 3.41
204 205 3.826157 TGCAGGGGAAATAGTGAAAACAG 59.174 43.478 0.00 0.00 0.00 3.16
205 206 3.838565 TGCAGGGGAAATAGTGAAAACA 58.161 40.909 0.00 0.00 0.00 2.83
206 207 4.438744 CGATGCAGGGGAAATAGTGAAAAC 60.439 45.833 0.00 0.00 0.00 2.43
207 208 3.694072 CGATGCAGGGGAAATAGTGAAAA 59.306 43.478 0.00 0.00 0.00 2.29
208 209 3.054728 TCGATGCAGGGGAAATAGTGAAA 60.055 43.478 0.00 0.00 0.00 2.69
209 210 2.503765 TCGATGCAGGGGAAATAGTGAA 59.496 45.455 0.00 0.00 0.00 3.18
210 211 2.115427 TCGATGCAGGGGAAATAGTGA 58.885 47.619 0.00 0.00 0.00 3.41
211 212 2.213499 GTCGATGCAGGGGAAATAGTG 58.787 52.381 0.00 0.00 0.00 2.74
212 213 1.837439 TGTCGATGCAGGGGAAATAGT 59.163 47.619 0.00 0.00 0.00 2.12
213 214 2.487934 CTGTCGATGCAGGGGAAATAG 58.512 52.381 0.00 0.00 33.11 1.73
214 215 1.475034 GCTGTCGATGCAGGGGAAATA 60.475 52.381 5.31 0.00 37.00 1.40
215 216 0.749454 GCTGTCGATGCAGGGGAAAT 60.749 55.000 5.31 0.00 37.00 2.17
216 217 1.377202 GCTGTCGATGCAGGGGAAA 60.377 57.895 5.31 0.00 37.00 3.13
217 218 1.913951 ATGCTGTCGATGCAGGGGAA 61.914 55.000 18.25 0.00 44.04 3.97
218 219 2.369633 ATGCTGTCGATGCAGGGGA 61.370 57.895 18.25 0.00 44.04 4.81
219 220 2.184830 CATGCTGTCGATGCAGGGG 61.185 63.158 18.25 9.12 44.04 4.79
220 221 3.417601 CATGCTGTCGATGCAGGG 58.582 61.111 18.25 11.05 44.04 4.45
221 222 1.434622 GACCATGCTGTCGATGCAGG 61.435 60.000 18.25 17.67 44.04 4.85
222 223 2.012237 GACCATGCTGTCGATGCAG 58.988 57.895 18.25 9.86 44.04 4.41
223 224 4.206958 GACCATGCTGTCGATGCA 57.793 55.556 16.30 16.30 44.95 3.96
245 246 4.735132 TCTTCTTGACGGCGGCGG 62.735 66.667 35.05 17.48 0.00 6.13
246 247 2.730672 CTTCTTCTTGACGGCGGCG 61.731 63.158 31.06 31.06 0.00 6.46
247 248 2.391389 CCTTCTTCTTGACGGCGGC 61.391 63.158 13.24 9.67 0.00 6.53
248 249 3.876300 CCTTCTTCTTGACGGCGG 58.124 61.111 13.24 0.00 0.00 6.13
251 252 0.250295 TGTGGCCTTCTTCTTGACGG 60.250 55.000 3.32 0.00 37.18 4.79
252 253 1.151668 CTGTGGCCTTCTTCTTGACG 58.848 55.000 3.32 0.00 0.00 4.35
253 254 2.147150 GTCTGTGGCCTTCTTCTTGAC 58.853 52.381 3.32 0.00 0.00 3.18
254 255 1.270305 CGTCTGTGGCCTTCTTCTTGA 60.270 52.381 3.32 0.00 0.00 3.02
255 256 1.151668 CGTCTGTGGCCTTCTTCTTG 58.848 55.000 3.32 0.00 0.00 3.02
256 257 1.048601 TCGTCTGTGGCCTTCTTCTT 58.951 50.000 3.32 0.00 0.00 2.52
257 258 1.066573 CATCGTCTGTGGCCTTCTTCT 60.067 52.381 3.32 0.00 0.00 2.85
258 259 1.363744 CATCGTCTGTGGCCTTCTTC 58.636 55.000 3.32 0.00 0.00 2.87
259 260 0.674895 GCATCGTCTGTGGCCTTCTT 60.675 55.000 3.32 0.00 0.00 2.52
260 261 1.078848 GCATCGTCTGTGGCCTTCT 60.079 57.895 3.32 0.00 0.00 2.85
261 262 2.109126 GGCATCGTCTGTGGCCTTC 61.109 63.158 3.32 0.00 43.09 3.46
262 263 2.045926 GGCATCGTCTGTGGCCTT 60.046 61.111 3.32 0.00 43.09 4.35
263 264 4.457496 CGGCATCGTCTGTGGCCT 62.457 66.667 3.32 0.00 44.23 5.19
264 265 4.451150 TCGGCATCGTCTGTGGCC 62.451 66.667 0.00 0.00 42.98 5.36
265 266 2.887568 CTCGGCATCGTCTGTGGC 60.888 66.667 0.00 0.00 38.63 5.01
266 267 2.202797 CCTCGGCATCGTCTGTGG 60.203 66.667 0.00 0.00 37.69 4.17
267 268 1.079819 AACCTCGGCATCGTCTGTG 60.080 57.895 0.00 0.00 37.69 3.66
268 269 1.079819 CAACCTCGGCATCGTCTGT 60.080 57.895 0.00 0.00 37.69 3.41
269 270 2.456119 GCAACCTCGGCATCGTCTG 61.456 63.158 0.00 0.00 37.69 3.51
270 271 2.125512 GCAACCTCGGCATCGTCT 60.126 61.111 0.00 0.00 37.69 4.18
271 272 2.125512 AGCAACCTCGGCATCGTC 60.126 61.111 0.00 0.00 37.69 4.20
272 273 2.434884 CAGCAACCTCGGCATCGT 60.435 61.111 0.00 0.00 37.69 3.73
273 274 3.869272 GCAGCAACCTCGGCATCG 61.869 66.667 0.00 0.00 37.82 3.84
274 275 3.512516 GGCAGCAACCTCGGCATC 61.513 66.667 0.00 0.00 0.00 3.91
300 301 0.896611 CACGAGTACGAGTAAACGCG 59.103 55.000 3.53 3.53 43.28 6.01
301 302 0.632241 GCACGAGTACGAGTAAACGC 59.368 55.000 0.00 0.00 42.66 4.84
302 303 2.238245 AGCACGAGTACGAGTAAACG 57.762 50.000 0.00 8.11 42.66 3.60
303 304 3.097185 GCTAGCACGAGTACGAGTAAAC 58.903 50.000 10.63 0.00 42.66 2.01
304 305 3.005554 AGCTAGCACGAGTACGAGTAAA 58.994 45.455 18.83 0.00 42.66 2.01
305 306 2.350804 CAGCTAGCACGAGTACGAGTAA 59.649 50.000 18.83 0.00 42.66 2.24
306 307 1.931841 CAGCTAGCACGAGTACGAGTA 59.068 52.381 18.83 0.00 42.66 2.59
307 308 0.727970 CAGCTAGCACGAGTACGAGT 59.272 55.000 18.83 0.00 42.66 4.18
308 309 0.727970 ACAGCTAGCACGAGTACGAG 59.272 55.000 18.83 0.00 42.66 4.18
309 310 2.014335 TACAGCTAGCACGAGTACGA 57.986 50.000 18.83 0.00 42.66 3.43
310 311 4.083961 ACATATACAGCTAGCACGAGTACG 60.084 45.833 18.83 8.64 45.75 3.67
311 312 5.359716 ACATATACAGCTAGCACGAGTAC 57.640 43.478 18.83 0.00 0.00 2.73
312 313 6.147328 CAGTACATATACAGCTAGCACGAGTA 59.853 42.308 18.83 13.71 33.30 2.59
313 314 5.049336 CAGTACATATACAGCTAGCACGAGT 60.049 44.000 18.83 11.94 33.30 4.18
314 315 5.386447 CAGTACATATACAGCTAGCACGAG 58.614 45.833 18.83 6.22 33.30 4.18
315 316 4.320275 GCAGTACATATACAGCTAGCACGA 60.320 45.833 18.83 0.67 39.91 4.35
316 317 3.914966 GCAGTACATATACAGCTAGCACG 59.085 47.826 18.83 10.16 39.91 5.34
323 324 8.898761 ACTATCTATGAGCAGTACATATACAGC 58.101 37.037 0.00 0.00 42.56 4.40
328 329 9.527157 AGTGAACTATCTATGAGCAGTACATAT 57.473 33.333 0.00 0.00 31.26 1.78
329 330 8.926092 AGTGAACTATCTATGAGCAGTACATA 57.074 34.615 0.00 0.00 0.00 2.29
330 331 7.831691 AGTGAACTATCTATGAGCAGTACAT 57.168 36.000 0.00 0.00 0.00 2.29
331 332 7.646548 AAGTGAACTATCTATGAGCAGTACA 57.353 36.000 0.00 0.00 0.00 2.90
346 347 9.146984 GCTTGTACACAACATATAAGTGAACTA 57.853 33.333 0.00 0.00 38.10 2.24
347 348 7.878127 AGCTTGTACACAACATATAAGTGAACT 59.122 33.333 0.00 0.00 38.10 3.01
348 349 8.029642 AGCTTGTACACAACATATAAGTGAAC 57.970 34.615 0.00 0.00 38.10 3.18
349 350 9.713713 TTAGCTTGTACACAACATATAAGTGAA 57.286 29.630 0.00 0.00 38.10 3.18
350 351 9.884636 ATTAGCTTGTACACAACATATAAGTGA 57.115 29.630 0.00 0.00 38.10 3.41
355 356 9.996554 AGCATATTAGCTTGTACACAACATATA 57.003 29.630 0.00 0.00 43.70 0.86
356 357 8.908786 AGCATATTAGCTTGTACACAACATAT 57.091 30.769 0.00 0.00 43.70 1.78
371 372 5.289675 CACAGCGATACCTAAGCATATTAGC 59.710 44.000 0.00 0.00 0.00 3.09
372 373 6.621613 TCACAGCGATACCTAAGCATATTAG 58.378 40.000 0.00 0.00 0.00 1.73
373 374 6.433093 TCTCACAGCGATACCTAAGCATATTA 59.567 38.462 0.00 0.00 0.00 0.98
374 375 5.243954 TCTCACAGCGATACCTAAGCATATT 59.756 40.000 0.00 0.00 0.00 1.28
375 376 4.767409 TCTCACAGCGATACCTAAGCATAT 59.233 41.667 0.00 0.00 0.00 1.78
376 377 4.142038 TCTCACAGCGATACCTAAGCATA 58.858 43.478 0.00 0.00 0.00 3.14
377 378 2.959030 TCTCACAGCGATACCTAAGCAT 59.041 45.455 0.00 0.00 0.00 3.79
378 379 2.375146 TCTCACAGCGATACCTAAGCA 58.625 47.619 0.00 0.00 0.00 3.91
379 380 3.312828 CATCTCACAGCGATACCTAAGC 58.687 50.000 0.00 0.00 0.00 3.09
380 381 3.243535 TGCATCTCACAGCGATACCTAAG 60.244 47.826 0.00 0.00 0.00 2.18
381 382 2.693074 TGCATCTCACAGCGATACCTAA 59.307 45.455 0.00 0.00 0.00 2.69
382 383 2.306847 TGCATCTCACAGCGATACCTA 58.693 47.619 0.00 0.00 0.00 3.08
383 384 1.114627 TGCATCTCACAGCGATACCT 58.885 50.000 0.00 0.00 0.00 3.08
384 385 2.160822 ATGCATCTCACAGCGATACC 57.839 50.000 0.00 0.00 0.00 2.73
385 386 2.989840 GGTATGCATCTCACAGCGATAC 59.010 50.000 0.19 0.00 0.00 2.24
386 387 2.627699 TGGTATGCATCTCACAGCGATA 59.372 45.455 0.19 0.00 0.00 2.92
387 388 1.413812 TGGTATGCATCTCACAGCGAT 59.586 47.619 0.19 0.00 0.00 4.58
388 389 0.823460 TGGTATGCATCTCACAGCGA 59.177 50.000 0.19 0.00 0.00 4.93
389 390 1.875009 ATGGTATGCATCTCACAGCG 58.125 50.000 0.19 0.00 0.00 5.18
390 391 6.111382 ACATATATGGTATGCATCTCACAGC 58.889 40.000 16.96 0.00 0.00 4.40
391 392 7.325694 TGACATATATGGTATGCATCTCACAG 58.674 38.462 16.96 0.00 0.00 3.66
392 393 7.243604 TGACATATATGGTATGCATCTCACA 57.756 36.000 16.96 0.00 0.00 3.58
393 394 7.254692 GCATGACATATATGGTATGCATCTCAC 60.255 40.741 30.95 14.03 43.94 3.51
394 395 6.764560 GCATGACATATATGGTATGCATCTCA 59.235 38.462 30.95 18.64 43.94 3.27
395 396 6.990939 AGCATGACATATATGGTATGCATCTC 59.009 38.462 33.84 17.22 45.41 2.75
396 397 6.896883 AGCATGACATATATGGTATGCATCT 58.103 36.000 33.84 22.35 45.41 2.90
397 398 7.563888 AAGCATGACATATATGGTATGCATC 57.436 36.000 33.84 18.24 45.41 3.91
398 399 8.270030 AGTAAGCATGACATATATGGTATGCAT 58.730 33.333 33.84 29.22 45.41 3.96
399 400 7.550196 CAGTAAGCATGACATATATGGTATGCA 59.450 37.037 33.84 22.79 45.41 3.96
400 401 7.550551 ACAGTAAGCATGACATATATGGTATGC 59.449 37.037 29.89 29.89 44.38 3.14
401 402 9.440773 AACAGTAAGCATGACATATATGGTATG 57.559 33.333 16.96 18.37 35.40 2.39
404 405 9.273016 GTAAACAGTAAGCATGACATATATGGT 57.727 33.333 16.96 2.89 37.83 3.55
405 406 9.494271 AGTAAACAGTAAGCATGACATATATGG 57.506 33.333 16.96 0.35 0.00 2.74
407 408 9.411801 CGAGTAAACAGTAAGCATGACATATAT 57.588 33.333 0.00 0.00 0.00 0.86
408 409 8.410912 ACGAGTAAACAGTAAGCATGACATATA 58.589 33.333 0.00 0.00 0.00 0.86
409 410 7.222805 CACGAGTAAACAGTAAGCATGACATAT 59.777 37.037 0.00 0.00 0.00 1.78
410 411 6.530181 CACGAGTAAACAGTAAGCATGACATA 59.470 38.462 0.00 0.00 0.00 2.29
411 412 5.348724 CACGAGTAAACAGTAAGCATGACAT 59.651 40.000 0.00 0.00 0.00 3.06
412 413 4.684242 CACGAGTAAACAGTAAGCATGACA 59.316 41.667 0.00 0.00 0.00 3.58
413 414 4.091509 CCACGAGTAAACAGTAAGCATGAC 59.908 45.833 0.00 0.00 0.00 3.06
414 415 4.021807 TCCACGAGTAAACAGTAAGCATGA 60.022 41.667 0.00 0.00 0.00 3.07
415 416 4.242475 TCCACGAGTAAACAGTAAGCATG 58.758 43.478 0.00 0.00 0.00 4.06
416 417 4.530710 TCCACGAGTAAACAGTAAGCAT 57.469 40.909 0.00 0.00 0.00 3.79
417 418 4.530710 ATCCACGAGTAAACAGTAAGCA 57.469 40.909 0.00 0.00 0.00 3.91
418 419 6.098017 ACTAATCCACGAGTAAACAGTAAGC 58.902 40.000 0.00 0.00 0.00 3.09
419 420 7.536855 AGACTAATCCACGAGTAAACAGTAAG 58.463 38.462 0.00 0.00 0.00 2.34
420 421 7.458409 AGACTAATCCACGAGTAAACAGTAA 57.542 36.000 0.00 0.00 0.00 2.24
421 422 8.565896 TTAGACTAATCCACGAGTAAACAGTA 57.434 34.615 0.00 0.00 0.00 2.74
422 423 5.979288 AGACTAATCCACGAGTAAACAGT 57.021 39.130 0.00 0.00 0.00 3.55
423 424 7.376336 CGATTAGACTAATCCACGAGTAAACAG 59.624 40.741 23.51 6.58 41.10 3.16
424 425 7.191551 CGATTAGACTAATCCACGAGTAAACA 58.808 38.462 23.51 0.00 41.10 2.83
425 426 6.636044 CCGATTAGACTAATCCACGAGTAAAC 59.364 42.308 23.51 2.06 41.10 2.01
426 427 6.543465 TCCGATTAGACTAATCCACGAGTAAA 59.457 38.462 23.51 2.83 41.10 2.01
427 428 6.057533 TCCGATTAGACTAATCCACGAGTAA 58.942 40.000 23.51 4.03 41.10 2.24
428 429 5.614308 TCCGATTAGACTAATCCACGAGTA 58.386 41.667 23.51 5.48 41.10 2.59
429 430 4.458397 TCCGATTAGACTAATCCACGAGT 58.542 43.478 23.51 0.00 41.10 4.18
430 431 5.434352 TTCCGATTAGACTAATCCACGAG 57.566 43.478 23.51 12.57 41.10 4.18
431 432 5.840243 TTTCCGATTAGACTAATCCACGA 57.160 39.130 23.51 15.77 41.10 4.35
432 433 6.019801 CACTTTTCCGATTAGACTAATCCACG 60.020 42.308 23.51 15.44 41.10 4.94
433 434 7.039882 TCACTTTTCCGATTAGACTAATCCAC 58.960 38.462 23.51 6.10 41.10 4.02
434 435 7.177832 TCACTTTTCCGATTAGACTAATCCA 57.822 36.000 23.51 11.81 41.10 3.41
435 436 9.760077 TTATCACTTTTCCGATTAGACTAATCC 57.240 33.333 23.51 10.58 41.10 3.01
446 447 9.184523 TGTTGGAAATATTATCACTTTTCCGAT 57.815 29.630 6.52 0.00 46.53 4.18
447 448 8.568676 TGTTGGAAATATTATCACTTTTCCGA 57.431 30.769 8.32 4.44 46.53 4.55
448 449 9.801873 ATTGTTGGAAATATTATCACTTTTCCG 57.198 29.630 8.32 0.00 46.53 4.30
453 454 8.405531 CGGTCATTGTTGGAAATATTATCACTT 58.594 33.333 0.00 0.00 0.00 3.16
454 455 7.013274 CCGGTCATTGTTGGAAATATTATCACT 59.987 37.037 0.00 0.00 0.00 3.41
455 456 7.138736 CCGGTCATTGTTGGAAATATTATCAC 58.861 38.462 0.00 0.00 0.00 3.06
456 457 6.238897 GCCGGTCATTGTTGGAAATATTATCA 60.239 38.462 1.90 0.00 0.00 2.15
457 458 6.149633 GCCGGTCATTGTTGGAAATATTATC 58.850 40.000 1.90 0.00 0.00 1.75
458 459 5.010617 GGCCGGTCATTGTTGGAAATATTAT 59.989 40.000 0.00 0.00 0.00 1.28
459 460 4.339814 GGCCGGTCATTGTTGGAAATATTA 59.660 41.667 0.00 0.00 0.00 0.98
460 461 3.132111 GGCCGGTCATTGTTGGAAATATT 59.868 43.478 0.00 0.00 0.00 1.28
461 462 2.693074 GGCCGGTCATTGTTGGAAATAT 59.307 45.455 0.00 0.00 0.00 1.28
462 463 2.096248 GGCCGGTCATTGTTGGAAATA 58.904 47.619 0.00 0.00 0.00 1.40
463 464 0.894835 GGCCGGTCATTGTTGGAAAT 59.105 50.000 0.00 0.00 0.00 2.17
464 465 0.468214 TGGCCGGTCATTGTTGGAAA 60.468 50.000 3.51 0.00 0.00 3.13
465 466 1.151679 TGGCCGGTCATTGTTGGAA 59.848 52.632 3.51 0.00 0.00 3.53
466 467 1.602323 GTGGCCGGTCATTGTTGGA 60.602 57.895 14.23 0.00 0.00 3.53
467 468 1.459455 TTGTGGCCGGTCATTGTTGG 61.459 55.000 14.23 0.00 0.00 3.77
468 469 0.602562 ATTGTGGCCGGTCATTGTTG 59.397 50.000 14.23 0.00 0.00 3.33
469 470 2.208132 TATTGTGGCCGGTCATTGTT 57.792 45.000 14.23 0.00 0.00 2.83
470 471 2.297701 GATATTGTGGCCGGTCATTGT 58.702 47.619 14.23 3.31 0.00 2.71
471 472 2.033299 GTGATATTGTGGCCGGTCATTG 59.967 50.000 14.23 0.00 0.00 2.82
472 473 2.092429 AGTGATATTGTGGCCGGTCATT 60.092 45.455 14.23 2.73 0.00 2.57
473 474 1.490490 AGTGATATTGTGGCCGGTCAT 59.510 47.619 14.23 0.00 0.00 3.06
474 475 0.908910 AGTGATATTGTGGCCGGTCA 59.091 50.000 3.51 3.51 0.00 4.02
475 476 1.139058 AGAGTGATATTGTGGCCGGTC 59.861 52.381 0.00 0.00 0.00 4.79
476 477 1.204146 AGAGTGATATTGTGGCCGGT 58.796 50.000 1.90 0.00 0.00 5.28
477 478 2.332063 AAGAGTGATATTGTGGCCGG 57.668 50.000 0.00 0.00 0.00 6.13
478 479 2.223340 GCAAAGAGTGATATTGTGGCCG 60.223 50.000 0.00 0.00 0.00 6.13
479 480 3.019564 AGCAAAGAGTGATATTGTGGCC 58.980 45.455 0.00 0.00 0.00 5.36
480 481 3.691118 TCAGCAAAGAGTGATATTGTGGC 59.309 43.478 0.00 0.00 0.00 5.01
481 482 6.446781 AATCAGCAAAGAGTGATATTGTGG 57.553 37.500 0.00 0.00 32.93 4.17
487 488 9.276590 CACCATATTAATCAGCAAAGAGTGATA 57.723 33.333 0.00 0.00 32.93 2.15
488 489 7.776969 ACACCATATTAATCAGCAAAGAGTGAT 59.223 33.333 0.00 0.00 34.79 3.06
489 490 7.112122 ACACCATATTAATCAGCAAAGAGTGA 58.888 34.615 0.00 0.00 0.00 3.41
490 491 7.281774 AGACACCATATTAATCAGCAAAGAGTG 59.718 37.037 0.00 0.00 0.00 3.51
491 492 7.281774 CAGACACCATATTAATCAGCAAAGAGT 59.718 37.037 0.00 0.00 0.00 3.24
492 493 7.637229 CAGACACCATATTAATCAGCAAAGAG 58.363 38.462 0.00 0.00 0.00 2.85
493 494 6.038603 GCAGACACCATATTAATCAGCAAAGA 59.961 38.462 0.00 0.00 0.00 2.52
494 495 6.039047 AGCAGACACCATATTAATCAGCAAAG 59.961 38.462 0.00 0.00 0.00 2.77
495 496 5.887598 AGCAGACACCATATTAATCAGCAAA 59.112 36.000 0.00 0.00 0.00 3.68
496 497 5.439721 AGCAGACACCATATTAATCAGCAA 58.560 37.500 0.00 0.00 0.00 3.91
497 498 5.039920 AGCAGACACCATATTAATCAGCA 57.960 39.130 0.00 0.00 0.00 4.41
498 499 6.382869 AAAGCAGACACCATATTAATCAGC 57.617 37.500 0.00 0.00 0.00 4.26
499 500 7.173907 CCCTAAAGCAGACACCATATTAATCAG 59.826 40.741 0.00 0.00 0.00 2.90
500 501 6.998074 CCCTAAAGCAGACACCATATTAATCA 59.002 38.462 0.00 0.00 0.00 2.57
501 502 7.173390 GTCCCTAAAGCAGACACCATATTAATC 59.827 40.741 0.00 0.00 0.00 1.75
502 503 6.998673 GTCCCTAAAGCAGACACCATATTAAT 59.001 38.462 0.00 0.00 0.00 1.40
503 504 6.354130 GTCCCTAAAGCAGACACCATATTAA 58.646 40.000 0.00 0.00 0.00 1.40
504 505 5.452776 CGTCCCTAAAGCAGACACCATATTA 60.453 44.000 0.00 0.00 0.00 0.98
505 506 4.683400 CGTCCCTAAAGCAGACACCATATT 60.683 45.833 0.00 0.00 0.00 1.28
506 507 3.181465 CGTCCCTAAAGCAGACACCATAT 60.181 47.826 0.00 0.00 0.00 1.78
507 508 2.167693 CGTCCCTAAAGCAGACACCATA 59.832 50.000 0.00 0.00 0.00 2.74
508 509 1.066143 CGTCCCTAAAGCAGACACCAT 60.066 52.381 0.00 0.00 0.00 3.55
509 510 0.320374 CGTCCCTAAAGCAGACACCA 59.680 55.000 0.00 0.00 0.00 4.17
510 511 0.606604 TCGTCCCTAAAGCAGACACC 59.393 55.000 0.00 0.00 0.00 4.16
511 512 1.997669 CTCGTCCCTAAAGCAGACAC 58.002 55.000 0.00 0.00 0.00 3.67
512 513 0.246635 GCTCGTCCCTAAAGCAGACA 59.753 55.000 0.00 0.00 36.06 3.41
513 514 0.802607 CGCTCGTCCCTAAAGCAGAC 60.803 60.000 0.00 0.00 35.76 3.51
514 515 1.248785 ACGCTCGTCCCTAAAGCAGA 61.249 55.000 0.00 0.00 35.76 4.26
515 516 0.389948 AACGCTCGTCCCTAAAGCAG 60.390 55.000 0.00 0.00 35.76 4.24
516 517 0.669318 CAACGCTCGTCCCTAAAGCA 60.669 55.000 0.00 0.00 35.76 3.91
517 518 0.389426 TCAACGCTCGTCCCTAAAGC 60.389 55.000 0.00 0.00 0.00 3.51
518 519 2.074547 TTCAACGCTCGTCCCTAAAG 57.925 50.000 0.00 0.00 0.00 1.85
519 520 2.343101 CATTCAACGCTCGTCCCTAAA 58.657 47.619 0.00 0.00 0.00 1.85
520 521 2.004583 CATTCAACGCTCGTCCCTAA 57.995 50.000 0.00 0.00 0.00 2.69
521 522 0.459585 GCATTCAACGCTCGTCCCTA 60.460 55.000 0.00 0.00 0.00 3.53
522 523 1.741770 GCATTCAACGCTCGTCCCT 60.742 57.895 0.00 0.00 0.00 4.20
523 524 2.750888 GGCATTCAACGCTCGTCCC 61.751 63.158 0.00 0.00 0.00 4.46
524 525 2.750888 GGGCATTCAACGCTCGTCC 61.751 63.158 0.00 0.00 0.00 4.79
525 526 0.459585 TAGGGCATTCAACGCTCGTC 60.460 55.000 0.00 0.00 34.03 4.20
526 527 0.036765 TTAGGGCATTCAACGCTCGT 60.037 50.000 0.00 0.00 34.03 4.18
527 528 1.299541 ATTAGGGCATTCAACGCTCG 58.700 50.000 0.00 0.00 34.03 5.03
528 529 3.128589 TCAAATTAGGGCATTCAACGCTC 59.871 43.478 0.00 0.00 0.00 5.03
529 530 3.088532 TCAAATTAGGGCATTCAACGCT 58.911 40.909 0.00 0.00 0.00 5.07
530 531 3.502191 TCAAATTAGGGCATTCAACGC 57.498 42.857 0.00 0.00 0.00 4.84
531 532 9.180678 GTATAAATCAAATTAGGGCATTCAACG 57.819 33.333 0.00 0.00 0.00 4.10
534 535 9.420118 AGTGTATAAATCAAATTAGGGCATTCA 57.580 29.630 0.00 0.00 0.00 2.57
562 563 9.770097 ACGTGAGTGATTGAAGATATTAATGAT 57.230 29.630 0.00 0.00 46.97 2.45
606 607 1.078072 TGGATAAATGCCCGTGCGT 60.078 52.632 0.00 0.00 41.78 5.24
621 622 5.054477 GCAGCCTTTATTCGTATAACTGGA 58.946 41.667 13.54 0.00 0.00 3.86
627 628 9.199982 GTAGTATTTGCAGCCTTTATTCGTATA 57.800 33.333 0.00 0.00 0.00 1.47
628 629 7.095774 CGTAGTATTTGCAGCCTTTATTCGTAT 60.096 37.037 0.00 0.00 0.00 3.06
648 649 2.030091 CGAGCATGAAGTCGTCGTAGTA 59.970 50.000 0.00 0.00 0.00 1.82
649 650 1.202043 CGAGCATGAAGTCGTCGTAGT 60.202 52.381 0.00 0.00 0.00 2.73
650 651 1.062148 TCGAGCATGAAGTCGTCGTAG 59.938 52.381 0.00 0.00 37.46 3.51
757 760 2.121538 TGATACGCGCTGCCTCTCT 61.122 57.895 5.73 0.00 0.00 3.10
774 777 2.049433 GTGGGGTCGTGACTCGTG 60.049 66.667 0.00 0.00 40.80 4.35
775 778 3.300765 GGTGGGGTCGTGACTCGT 61.301 66.667 0.00 0.00 40.80 4.18
776 779 4.065281 GGGTGGGGTCGTGACTCG 62.065 72.222 0.00 0.00 41.41 4.18
777 780 2.920912 TGGGTGGGGTCGTGACTC 60.921 66.667 0.00 0.00 0.00 3.36
778 781 3.239253 GTGGGTGGGGTCGTGACT 61.239 66.667 0.00 0.00 0.00 3.41
779 782 4.324991 GGTGGGTGGGGTCGTGAC 62.325 72.222 0.00 0.00 0.00 3.67
821 824 2.159282 GCATCAATCAGTCTTGGCTTGG 60.159 50.000 0.00 0.00 0.00 3.61
822 825 2.753452 AGCATCAATCAGTCTTGGCTTG 59.247 45.455 0.00 0.00 0.00 4.01
845 848 1.449246 CGCCTTTCTCCAGCTCCTG 60.449 63.158 0.00 0.00 0.00 3.86
936 939 3.134081 GGAGGAGGTTTGACCATCGATTA 59.866 47.826 0.00 0.00 41.95 1.75
1004 1007 4.816984 GGAGGGAGAGACGGCGGA 62.817 72.222 13.24 0.00 0.00 5.54
1461 1464 2.091112 CGTCTTGCTGAGCGAGGTG 61.091 63.158 20.91 10.29 40.25 4.00
1693 1696 0.671781 ACTAGCAGCACAAAGGCGAG 60.672 55.000 0.00 0.00 39.27 5.03
1727 1730 0.508641 CCACACGAAGAAGCACGAAG 59.491 55.000 0.00 0.00 0.00 3.79
1785 1788 3.123620 CGCTTGCTCCTGCTGTCC 61.124 66.667 0.00 0.00 40.48 4.02
1890 1893 0.599728 GGCCGATGATGCTGTCTCTC 60.600 60.000 0.00 0.00 0.00 3.20
1947 1950 4.479993 GCCACCTCTGCGCCATCT 62.480 66.667 4.18 0.00 0.00 2.90
2298 2301 1.277326 TCGCCTCAAAATCGTCATCG 58.723 50.000 0.00 0.00 38.55 3.84
2733 2736 2.158755 AGGCCTGTCCGGAATGATTAAG 60.159 50.000 5.23 0.00 40.77 1.85
2987 2990 9.173939 GCAAAAATACATGTTATCATCTACAGC 57.826 33.333 2.30 0.00 31.15 4.40
3019 3022 8.856103 TGTCACACGAGAATCATATATTTCCTA 58.144 33.333 0.00 0.00 33.17 2.94
3037 3040 3.585748 AACGAATTGAACTGTCACACG 57.414 42.857 0.00 0.00 31.90 4.49
3038 3041 7.597441 GTTTTAAACGAATTGAACTGTCACAC 58.403 34.615 0.00 0.00 31.90 3.82
3039 3042 7.728580 GTTTTAAACGAATTGAACTGTCACA 57.271 32.000 0.00 0.00 31.90 3.58
3062 3065 9.595823 AGCAAAGATAAACAACACTATATACGT 57.404 29.630 0.00 0.00 0.00 3.57
3071 3074 6.088085 GCATGTGTAGCAAAGATAAACAACAC 59.912 38.462 0.00 0.00 37.18 3.32
3092 3095 6.381481 TTCCATCAATTACTAAGCTGCATG 57.619 37.500 1.02 0.00 0.00 4.06
3124 3127 8.416329 TCTCCAAAATCTCAAAGAAAAGAAAGG 58.584 33.333 0.00 0.00 0.00 3.11
3125 3128 9.978044 ATCTCCAAAATCTCAAAGAAAAGAAAG 57.022 29.630 0.00 0.00 0.00 2.62
3126 3129 9.971922 GATCTCCAAAATCTCAAAGAAAAGAAA 57.028 29.630 0.00 0.00 0.00 2.52
3127 3130 8.292448 CGATCTCCAAAATCTCAAAGAAAAGAA 58.708 33.333 0.00 0.00 0.00 2.52
3128 3131 7.661437 TCGATCTCCAAAATCTCAAAGAAAAGA 59.339 33.333 0.00 0.00 0.00 2.52
3129 3132 7.810658 TCGATCTCCAAAATCTCAAAGAAAAG 58.189 34.615 0.00 0.00 0.00 2.27
3130 3133 7.744087 TCGATCTCCAAAATCTCAAAGAAAA 57.256 32.000 0.00 0.00 0.00 2.29
3131 3134 7.744087 TTCGATCTCCAAAATCTCAAAGAAA 57.256 32.000 0.00 0.00 0.00 2.52
3134 3137 6.026513 GCTTTCGATCTCCAAAATCTCAAAG 58.973 40.000 0.00 0.00 30.91 2.77
3152 3155 4.093556 GGACAAAGGATCACTAAGCTTTCG 59.906 45.833 3.20 0.00 0.00 3.46
3218 3307 2.576648 GAGGTACCTTTGAACCCCAGAT 59.423 50.000 17.53 0.00 36.34 2.90
3223 3312 4.838904 ACTATGAGGTACCTTTGAACCC 57.161 45.455 17.53 1.29 36.34 4.11
3239 3328 9.307121 GAATGATCGTCCTAATATGGAACTATG 57.693 37.037 0.00 0.00 37.93 2.23
3285 3374 5.551760 AAGCTAATCAAATCAGTGGAACG 57.448 39.130 0.00 0.00 45.86 3.95
3352 3441 9.658799 CCACTCTAACATCATCTTTCTCTTTAA 57.341 33.333 0.00 0.00 0.00 1.52
3434 3523 8.738645 AAAACTTATCATTAGTAGAAGGGCTG 57.261 34.615 0.00 0.00 0.00 4.85
3476 3565 4.103153 ACCAGATCAATACCCACCACATAG 59.897 45.833 0.00 0.00 0.00 2.23
3477 3566 4.044308 ACCAGATCAATACCCACCACATA 58.956 43.478 0.00 0.00 0.00 2.29
3499 3588 4.462483 GCCCAACCATCTCAATAGAACAAA 59.538 41.667 0.00 0.00 34.73 2.83
3597 3686 5.148502 GAGAACTAGGTTCCTGGATATCCA 58.851 45.833 23.17 23.17 42.85 3.41
3598 3687 4.528987 GGAGAACTAGGTTCCTGGATATCC 59.471 50.000 15.39 15.39 42.85 2.59
3628 3717 2.248248 TCAGTACCTCCAGTGTCAAGG 58.752 52.381 0.00 2.71 36.21 3.61
3629 3718 5.860941 ATATCAGTACCTCCAGTGTCAAG 57.139 43.478 0.00 0.00 0.00 3.02
3688 3777 7.710907 TGGTCATATTAATCCTCTTCAACTTCG 59.289 37.037 0.00 0.00 0.00 3.79
3739 3829 2.163509 GAGCCACCTTCCTTTTTCCTC 58.836 52.381 0.00 0.00 0.00 3.71
3763 3853 2.291741 GTGCTTCACATAGCCAATAGCC 59.708 50.000 0.00 0.00 40.49 3.93
3857 5978 4.093011 TCCCCCTTACATTCCAAAACATG 58.907 43.478 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.