Multiple sequence alignment - TraesCS4A01G205600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G205600 chr4A 100.000 4019 0 0 1 4019 497891741 497887723 0.000000e+00 7422
1 TraesCS4A01G205600 chr4A 73.506 385 84 13 84 457 701318524 701318147 3.260000e-26 130
2 TraesCS4A01G205600 chr4D 95.395 3192 73 17 843 4019 84763338 84760206 0.000000e+00 5012
3 TraesCS4A01G205600 chr4D 93.899 672 37 4 7 677 84765672 84765004 0.000000e+00 1011
4 TraesCS4A01G205600 chr7A 81.974 466 66 16 1 457 608120842 608120386 2.930000e-101 379
5 TraesCS4A01G205600 chr7A 92.308 169 13 0 676 844 324925199 324925031 1.440000e-59 241
6 TraesCS4A01G205600 chr3D 93.333 165 11 0 680 844 55089538 55089374 1.120000e-60 244
7 TraesCS4A01G205600 chr7B 90.710 183 12 4 664 846 645391780 645391603 5.190000e-59 239
8 TraesCS4A01G205600 chr1D 91.429 175 14 1 674 848 238940385 238940212 5.190000e-59 239
9 TraesCS4A01G205600 chr6D 91.329 173 15 0 677 849 392896972 392897144 1.870000e-58 237
10 TraesCS4A01G205600 chr3B 91.329 173 15 0 673 845 571752518 571752690 1.870000e-58 237
11 TraesCS4A01G205600 chr6B 90.909 176 15 1 671 845 171210692 171210867 6.720000e-58 235
12 TraesCS4A01G205600 chr5B 90.503 179 15 2 676 852 427931371 427931193 6.720000e-58 235
13 TraesCS4A01G205600 chr5B 73.552 397 88 14 72 457 160137877 160138267 7.010000e-28 135
14 TraesCS4A01G205600 chr4B 88.601 193 20 2 680 871 389466943 389466752 2.420000e-57 233


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G205600 chr4A 497887723 497891741 4018 True 7422.0 7422 100.000 1 4019 1 chr4A.!!$R1 4018
1 TraesCS4A01G205600 chr4D 84760206 84765672 5466 True 3011.5 5012 94.647 7 4019 2 chr4D.!!$R1 4012

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.033699 GCCAGAATTGGGAGCCTTCT 60.034 55.0 0.0 0.0 45.16 2.85 F
1053 2561 0.044092 AAATTCCAATCCCCACCCCC 59.956 55.0 0.0 0.0 0.00 5.40 F
1463 2971 0.252284 GTGGAGGAGGAGGTGGAAGA 60.252 60.0 0.0 0.0 0.00 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1503 3011 0.036875 CCTCCTCTTCCACAACCACC 59.963 60.0 0.00 0.0 0.00 4.61 R
2805 4313 0.693049 ATCTTGCGGAAGGACCAGTT 59.307 50.0 17.16 0.0 38.90 3.16 R
3311 4820 0.904649 TGATCAGCGTTCCCTGTCAT 59.095 50.0 0.00 0.0 34.47 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 0.179000 GTTGCAGATCCCGACCTCAT 59.821 55.000 0.00 0.00 0.00 2.90
134 135 0.613012 GTGCCAGAATTGGGAGCCTT 60.613 55.000 0.00 0.00 46.40 4.35
136 137 0.033699 GCCAGAATTGGGAGCCTTCT 60.034 55.000 0.00 0.00 45.16 2.85
176 177 3.252351 AGGGGTTGGCTCCTAAGATATC 58.748 50.000 0.00 0.00 45.74 1.63
248 249 4.278419 GCCACAACCATTTTGTAAGAGAGT 59.722 41.667 0.00 0.00 0.00 3.24
253 254 6.772716 ACAACCATTTTGTAAGAGAGTGATGT 59.227 34.615 0.00 0.00 0.00 3.06
259 260 8.509690 CATTTTGTAAGAGAGTGATGTTCATGT 58.490 33.333 0.00 0.00 0.00 3.21
260 261 7.425577 TTTGTAAGAGAGTGATGTTCATGTG 57.574 36.000 0.00 0.00 0.00 3.21
310 311 3.206964 GAGTCCCTAGGCTTGCAAATAC 58.793 50.000 2.05 0.00 0.00 1.89
321 322 1.529226 TGCAAATACCGGTCCAACAG 58.471 50.000 12.40 0.00 0.00 3.16
348 349 1.005450 TGGTGTTTCTGCTTATCCCCC 59.995 52.381 0.00 0.00 0.00 5.40
349 350 1.285078 GGTGTTTCTGCTTATCCCCCT 59.715 52.381 0.00 0.00 0.00 4.79
350 351 2.644676 GTGTTTCTGCTTATCCCCCTC 58.355 52.381 0.00 0.00 0.00 4.30
351 352 2.026262 GTGTTTCTGCTTATCCCCCTCA 60.026 50.000 0.00 0.00 0.00 3.86
353 354 3.117888 TGTTTCTGCTTATCCCCCTCATC 60.118 47.826 0.00 0.00 0.00 2.92
355 356 0.322975 CTGCTTATCCCCCTCATCGG 59.677 60.000 0.00 0.00 0.00 4.18
356 357 1.003233 GCTTATCCCCCTCATCGGC 60.003 63.158 0.00 0.00 0.00 5.54
382 383 8.367156 CCCAGAAGAATTTGGATTGAAACTTTA 58.633 33.333 0.00 0.00 36.55 1.85
405 406 2.920724 TCATGTGAAGGGTTTCGTGA 57.079 45.000 0.00 0.00 36.04 4.35
414 415 4.020039 TGAAGGGTTTCGTGAAGGCTATAA 60.020 41.667 0.00 0.00 36.04 0.98
445 446 6.586344 TGATAAACATGAGGAGGCTAGAAAG 58.414 40.000 0.00 0.00 0.00 2.62
452 453 1.062505 AGGAGGCTAGAAAGGGAGGAG 60.063 57.143 0.00 0.00 0.00 3.69
501 502 9.749490 CAAGCATTGTTCATTTATTCAATTCAC 57.251 29.630 0.00 0.00 42.34 3.18
547 548 7.275888 AGAAACAATCACATGTAAGCTTGAA 57.724 32.000 9.86 0.00 32.02 2.69
555 556 8.621532 ATCACATGTAAGCTTGAACTAAAAGA 57.378 30.769 9.86 0.00 0.00 2.52
556 557 8.087982 TCACATGTAAGCTTGAACTAAAAGAG 57.912 34.615 9.86 0.00 0.00 2.85
558 559 5.591643 TGTAAGCTTGAACTAAAAGAGCG 57.408 39.130 9.86 0.00 38.34 5.03
566 567 4.813027 TGAACTAAAAGAGCGTCGGTTAT 58.187 39.130 0.00 0.00 0.00 1.89
627 628 8.969121 TTATGTTTGTAAACTCTCATTGCATG 57.031 30.769 8.74 0.00 39.59 4.06
643 644 4.979943 TGCATGTTGAGAACTTGAACAA 57.020 36.364 6.54 0.00 38.44 2.83
662 663 6.434028 TGAACAAATTGCTATGGCTAAACTCT 59.566 34.615 1.68 0.00 39.59 3.24
667 668 9.638239 CAAATTGCTATGGCTAAACTCTTTTTA 57.362 29.630 1.68 0.00 39.59 1.52
706 707 9.930693 ACTCTCTTCGTTCTTAAATATTTGTCT 57.069 29.630 11.05 0.00 0.00 3.41
726 727 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
727 728 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
728 729 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
730 731 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
738 739 9.302345 GAGATTTCAACAAGTGACTATATTCGA 57.698 33.333 0.00 0.00 35.39 3.71
739 740 9.653287 AGATTTCAACAAGTGACTATATTCGAA 57.347 29.630 0.00 0.00 35.39 3.71
740 741 9.907576 GATTTCAACAAGTGACTATATTCGAAG 57.092 33.333 3.35 0.00 35.39 3.79
741 742 6.887376 TCAACAAGTGACTATATTCGAAGC 57.113 37.500 3.35 0.00 0.00 3.86
744 745 7.386573 TCAACAAGTGACTATATTCGAAGCAAA 59.613 33.333 3.35 0.00 0.00 3.68
745 746 7.667043 ACAAGTGACTATATTCGAAGCAAAA 57.333 32.000 3.35 0.00 0.00 2.44
746 747 8.268850 ACAAGTGACTATATTCGAAGCAAAAT 57.731 30.769 3.35 0.00 0.00 1.82
747 748 8.177663 ACAAGTGACTATATTCGAAGCAAAATG 58.822 33.333 3.35 0.00 0.00 2.32
748 749 8.390354 CAAGTGACTATATTCGAAGCAAAATGA 58.610 33.333 3.35 0.00 0.00 2.57
749 750 8.136057 AGTGACTATATTCGAAGCAAAATGAG 57.864 34.615 3.35 0.00 0.00 2.90
750 751 7.766278 AGTGACTATATTCGAAGCAAAATGAGT 59.234 33.333 3.35 0.00 0.00 3.41
751 752 7.848051 GTGACTATATTCGAAGCAAAATGAGTG 59.152 37.037 3.35 0.00 0.00 3.51
752 753 7.763985 TGACTATATTCGAAGCAAAATGAGTGA 59.236 33.333 3.35 0.00 0.00 3.41
754 755 9.113838 ACTATATTCGAAGCAAAATGAGTGAAT 57.886 29.630 3.35 0.00 0.00 2.57
755 756 9.591404 CTATATTCGAAGCAAAATGAGTGAATC 57.409 33.333 3.35 0.00 0.00 2.52
756 757 5.947228 TTCGAAGCAAAATGAGTGAATCT 57.053 34.783 0.00 0.00 0.00 2.40
758 759 6.408858 TCGAAGCAAAATGAGTGAATCTAC 57.591 37.500 0.00 0.00 0.00 2.59
759 760 5.931724 TCGAAGCAAAATGAGTGAATCTACA 59.068 36.000 0.00 0.00 0.00 2.74
760 761 6.595326 TCGAAGCAAAATGAGTGAATCTACAT 59.405 34.615 0.00 0.00 0.00 2.29
762 763 7.752239 CGAAGCAAAATGAGTGAATCTACATTT 59.248 33.333 0.00 0.00 42.25 2.32
763 764 9.415544 GAAGCAAAATGAGTGAATCTACATTTT 57.584 29.630 0.00 0.00 46.58 1.82
804 805 7.345691 ACATCCATATGTGGTAGTTCATTTGA 58.654 34.615 8.51 0.00 44.79 2.69
805 806 7.833682 ACATCCATATGTGGTAGTTCATTTGAA 59.166 33.333 8.51 0.00 44.79 2.69
806 807 8.685427 CATCCATATGTGGTAGTTCATTTGAAA 58.315 33.333 8.51 0.00 46.16 2.69
807 808 8.821686 TCCATATGTGGTAGTTCATTTGAAAT 57.178 30.769 8.51 0.00 46.16 2.17
808 809 9.913310 TCCATATGTGGTAGTTCATTTGAAATA 57.087 29.630 8.51 0.00 46.16 1.40
838 839 8.582433 AAAACACAAATATTTAACAACGGAGG 57.418 30.769 0.00 0.00 0.00 4.30
839 840 6.262193 ACACAAATATTTAACAACGGAGGG 57.738 37.500 0.00 0.00 0.00 4.30
840 841 6.005198 ACACAAATATTTAACAACGGAGGGA 58.995 36.000 0.00 0.00 0.00 4.20
841 842 6.150474 ACACAAATATTTAACAACGGAGGGAG 59.850 38.462 0.00 0.00 0.00 4.30
871 2373 3.306917 TCCTGCAGCAAACATGATTTG 57.693 42.857 8.66 7.97 0.00 2.32
896 2401 7.494298 TGTTTTTGTCCTTTATTTTCAGCCTTC 59.506 33.333 0.00 0.00 0.00 3.46
915 2420 2.358247 CCAAACGACCCCTGGACG 60.358 66.667 0.00 3.56 45.28 4.79
916 2421 2.358247 CAAACGACCCCTGGACGG 60.358 66.667 9.56 0.00 44.22 4.79
947 2452 2.139917 CGTGATCCAAAGTCCAAACGA 58.860 47.619 0.00 0.00 31.76 3.85
972 2477 4.501571 GGAAAGAAGAAGGCCCAAAAGAAC 60.502 45.833 0.00 0.00 0.00 3.01
980 2485 2.434336 AGGCCCAAAAGAACAGGAAAAC 59.566 45.455 0.00 0.00 0.00 2.43
991 2496 6.002653 AGAACAGGAAAACCAGTTTCTAGT 57.997 37.500 0.00 0.00 44.43 2.57
1053 2561 0.044092 AAATTCCAATCCCCACCCCC 59.956 55.000 0.00 0.00 0.00 5.40
1063 2571 4.075793 CCACCCCCTCTCCTCCGA 62.076 72.222 0.00 0.00 0.00 4.55
1210 2718 3.009115 CCTTCCCGCTCCCCTTCA 61.009 66.667 0.00 0.00 0.00 3.02
1221 2729 4.101448 CCCTTCACCTGGGGCGAG 62.101 72.222 0.00 0.00 40.97 5.03
1260 2768 1.112315 CCCTCCAGTCCTCCATCTCG 61.112 65.000 0.00 0.00 0.00 4.04
1344 2852 4.277593 CCAACCGGCAAGCGCAAA 62.278 61.111 11.47 0.00 41.24 3.68
1359 2867 2.350388 GCGCAAAAATCAAGGAGACGAA 60.350 45.455 0.30 0.00 0.00 3.85
1364 2872 5.444122 CAAAAATCAAGGAGACGAAGACAC 58.556 41.667 0.00 0.00 0.00 3.67
1445 2953 1.132689 AGAAGAAGTGGAGGTGGAGGT 60.133 52.381 0.00 0.00 0.00 3.85
1446 2954 1.002544 GAAGAAGTGGAGGTGGAGGTG 59.997 57.143 0.00 0.00 0.00 4.00
1447 2955 0.838122 AGAAGTGGAGGTGGAGGTGG 60.838 60.000 0.00 0.00 0.00 4.61
1448 2956 0.836400 GAAGTGGAGGTGGAGGTGGA 60.836 60.000 0.00 0.00 0.00 4.02
1449 2957 0.838122 AAGTGGAGGTGGAGGTGGAG 60.838 60.000 0.00 0.00 0.00 3.86
1450 2958 2.122729 TGGAGGTGGAGGTGGAGG 59.877 66.667 0.00 0.00 0.00 4.30
1451 2959 2.450243 GGAGGTGGAGGTGGAGGA 59.550 66.667 0.00 0.00 0.00 3.71
1452 2960 1.687493 GGAGGTGGAGGTGGAGGAG 60.687 68.421 0.00 0.00 0.00 3.69
1453 2961 1.687493 GAGGTGGAGGTGGAGGAGG 60.687 68.421 0.00 0.00 0.00 4.30
1454 2962 2.169590 GAGGTGGAGGTGGAGGAGGA 62.170 65.000 0.00 0.00 0.00 3.71
1455 2963 1.687493 GGTGGAGGTGGAGGAGGAG 60.687 68.421 0.00 0.00 0.00 3.69
1456 2964 1.687493 GTGGAGGTGGAGGAGGAGG 60.687 68.421 0.00 0.00 0.00 4.30
1457 2965 2.177518 TGGAGGTGGAGGAGGAGGT 61.178 63.158 0.00 0.00 0.00 3.85
1458 2966 1.687493 GGAGGTGGAGGAGGAGGTG 60.687 68.421 0.00 0.00 0.00 4.00
1459 2967 1.687493 GAGGTGGAGGAGGAGGTGG 60.687 68.421 0.00 0.00 0.00 4.61
1460 2968 2.169590 GAGGTGGAGGAGGAGGTGGA 62.170 65.000 0.00 0.00 0.00 4.02
1461 2969 1.229529 GGTGGAGGAGGAGGTGGAA 60.230 63.158 0.00 0.00 0.00 3.53
1462 2970 1.268283 GGTGGAGGAGGAGGTGGAAG 61.268 65.000 0.00 0.00 0.00 3.46
1463 2971 0.252284 GTGGAGGAGGAGGTGGAAGA 60.252 60.000 0.00 0.00 0.00 2.87
1464 2972 0.491823 TGGAGGAGGAGGTGGAAGAA 59.508 55.000 0.00 0.00 0.00 2.52
1465 2973 1.199615 GGAGGAGGAGGTGGAAGAAG 58.800 60.000 0.00 0.00 0.00 2.85
1466 2974 1.273324 GGAGGAGGAGGTGGAAGAAGA 60.273 57.143 0.00 0.00 0.00 2.87
1467 2975 2.541466 GAGGAGGAGGTGGAAGAAGAA 58.459 52.381 0.00 0.00 0.00 2.52
1468 2976 2.499693 GAGGAGGAGGTGGAAGAAGAAG 59.500 54.545 0.00 0.00 0.00 2.85
1469 2977 2.158081 AGGAGGAGGTGGAAGAAGAAGT 60.158 50.000 0.00 0.00 0.00 3.01
1470 2978 2.027653 GGAGGAGGTGGAAGAAGAAGTG 60.028 54.545 0.00 0.00 0.00 3.16
1471 2979 1.981495 AGGAGGTGGAAGAAGAAGTGG 59.019 52.381 0.00 0.00 0.00 4.00
1472 2980 1.978580 GGAGGTGGAAGAAGAAGTGGA 59.021 52.381 0.00 0.00 0.00 4.02
1473 2981 2.027653 GGAGGTGGAAGAAGAAGTGGAG 60.028 54.545 0.00 0.00 0.00 3.86
1474 2982 1.981495 AGGTGGAAGAAGAAGTGGAGG 59.019 52.381 0.00 0.00 0.00 4.30
1501 3009 1.979308 AGGAGGATGCTGATGATGAGG 59.021 52.381 0.00 0.00 32.93 3.86
1503 3011 2.027929 GGAGGATGCTGATGATGAGGAG 60.028 54.545 0.00 0.00 0.00 3.69
1505 3013 1.698532 GGATGCTGATGATGAGGAGGT 59.301 52.381 0.00 0.00 0.00 3.85
1516 3024 0.764890 TGAGGAGGTGGTTGTGGAAG 59.235 55.000 0.00 0.00 0.00 3.46
1517 3025 1.056660 GAGGAGGTGGTTGTGGAAGA 58.943 55.000 0.00 0.00 0.00 2.87
1518 3026 1.002544 GAGGAGGTGGTTGTGGAAGAG 59.997 57.143 0.00 0.00 0.00 2.85
1596 3104 3.435186 GGCAAGCCGCAGAAGGAC 61.435 66.667 0.00 0.00 45.17 3.85
1631 3139 2.975489 TGGAAGCTGAAGAAGAGAAGGT 59.025 45.455 0.00 0.00 0.00 3.50
1673 3181 1.440893 CCAGTGATGAGGCCGAGAG 59.559 63.158 0.00 0.00 0.00 3.20
1743 3251 0.259938 AGATGGGGGATGCCAAAGAC 59.740 55.000 5.30 0.00 0.00 3.01
1754 3262 1.004560 CCAAAGACGAGCAGCAGGA 60.005 57.895 0.00 0.00 0.00 3.86
1839 3347 1.079819 CGTCGCAGGACTGGTGAAT 60.080 57.895 1.01 0.00 41.16 2.57
1992 3500 1.571460 GGAGAACTGTGTTGCGCTG 59.429 57.895 9.73 0.00 0.00 5.18
2009 3517 3.503363 GATCCGCTGTGTGCCTGC 61.503 66.667 0.00 0.00 38.78 4.85
2014 3522 2.903855 GCTGTGTGCCTGCTGTGT 60.904 61.111 0.00 0.00 35.32 3.72
2405 3913 4.098501 GGGATATGTTGAGAAGGCAAAAGG 59.901 45.833 0.00 0.00 0.00 3.11
2456 3964 5.032846 TGGATTAGACAAGTCCCTGAATCT 58.967 41.667 0.00 0.00 0.00 2.40
2466 3974 4.560739 AGTCCCTGAATCTGACCATATCA 58.439 43.478 0.00 0.00 35.45 2.15
2529 4037 4.077300 ACAGCAACTCACTGATTCAAGA 57.923 40.909 0.00 0.00 38.55 3.02
2664 4172 1.410153 ACCCAACAGCAGAAGCAAAAG 59.590 47.619 0.00 0.00 45.49 2.27
2703 4211 0.888285 AGAAGGAGCAGCAGCAACAC 60.888 55.000 3.17 0.00 45.49 3.32
2714 4222 0.532862 CAGCAACACGAGGGACAAGT 60.533 55.000 0.00 0.00 0.00 3.16
2805 4313 2.706723 TGTTACCAAGCTACCAACTCCA 59.293 45.455 0.00 0.00 0.00 3.86
2934 4442 0.621609 TACCGGGAATTCAAGGTGGG 59.378 55.000 25.32 12.08 37.57 4.61
2963 4471 2.852413 CAGCAAATGTCGTACCTACTCG 59.148 50.000 0.00 0.00 0.00 4.18
2964 4472 2.159282 AGCAAATGTCGTACCTACTCGG 60.159 50.000 0.00 0.00 39.35 4.63
2982 4490 2.023673 CGGCATAATCCTTTCCAGCAA 58.976 47.619 0.00 0.00 0.00 3.91
2997 4505 3.630312 TCCAGCAAAATCCTTTATACCGC 59.370 43.478 0.00 0.00 0.00 5.68
3067 4575 8.596781 AGTAAACTACAACTCAGACATAGGAT 57.403 34.615 0.00 0.00 0.00 3.24
3228 4737 7.168219 TGTGTTTCTTCATTAATCAGTAGCCT 58.832 34.615 0.00 0.00 0.00 4.58
3231 4740 7.882791 TGTTTCTTCATTAATCAGTAGCCTTCA 59.117 33.333 0.00 0.00 0.00 3.02
3257 4766 3.170791 ACATGCTGTCCATTACTCTCG 57.829 47.619 0.00 0.00 29.71 4.04
3311 4820 2.168521 GCATCCACACTAGTGCTCCTAA 59.831 50.000 22.90 3.32 44.53 2.69
3317 4826 4.428209 CACACTAGTGCTCCTAATGACAG 58.572 47.826 22.90 0.00 39.21 3.51
3409 4918 5.874261 AGTTAAATGTGCATGGTTAATTGCC 59.126 36.000 0.00 0.00 38.08 4.52
3468 4977 4.422073 TCACATTCACACTCCTTCAACT 57.578 40.909 0.00 0.00 0.00 3.16
3665 5175 3.691609 GCTGAACCTAGAAATGAACAGGG 59.308 47.826 0.00 0.00 32.12 4.45
3680 5190 2.719739 ACAGGGCTGTTGAATGATGAG 58.280 47.619 0.00 0.00 41.83 2.90
3696 5206 9.334947 TGAATGATGAGTAGATTTTCCATCTTC 57.665 33.333 0.00 0.00 35.80 2.87
3797 5307 4.149511 TGACTGTCTTGTTGACCAATGA 57.850 40.909 9.51 0.00 44.75 2.57
3816 5326 4.817318 TGACCAGTGAATGTGCTATGTA 57.183 40.909 0.00 0.00 0.00 2.29
3817 5327 5.357742 TGACCAGTGAATGTGCTATGTAT 57.642 39.130 0.00 0.00 0.00 2.29
3840 5350 1.099879 CCAGCCAGCTAGATTGGTGC 61.100 60.000 5.79 0.00 38.02 5.01
3870 5380 3.379372 GCAGTTGGTGATAGCATTGTCAT 59.621 43.478 0.00 0.00 0.00 3.06
3871 5381 4.576053 GCAGTTGGTGATAGCATTGTCATA 59.424 41.667 0.00 0.00 0.00 2.15
3872 5382 5.066375 GCAGTTGGTGATAGCATTGTCATAA 59.934 40.000 0.00 0.00 0.00 1.90
3873 5383 6.238842 GCAGTTGGTGATAGCATTGTCATAAT 60.239 38.462 0.00 0.00 0.00 1.28
3874 5384 7.041167 GCAGTTGGTGATAGCATTGTCATAATA 60.041 37.037 0.00 0.00 0.00 0.98
3875 5385 8.839343 CAGTTGGTGATAGCATTGTCATAATAA 58.161 33.333 0.00 0.00 0.00 1.40
3876 5386 9.407380 AGTTGGTGATAGCATTGTCATAATAAA 57.593 29.630 0.00 0.00 0.00 1.40
3877 5387 9.669353 GTTGGTGATAGCATTGTCATAATAAAG 57.331 33.333 0.00 0.00 0.00 1.85
3878 5388 8.394971 TGGTGATAGCATTGTCATAATAAAGG 57.605 34.615 0.00 0.00 0.00 3.11
3879 5389 7.998383 TGGTGATAGCATTGTCATAATAAAGGT 59.002 33.333 0.00 0.00 0.00 3.50
3880 5390 8.292448 GGTGATAGCATTGTCATAATAAAGGTG 58.708 37.037 0.00 0.00 0.00 4.00
3881 5391 9.056005 GTGATAGCATTGTCATAATAAAGGTGA 57.944 33.333 0.00 0.00 0.00 4.02
3882 5392 9.797642 TGATAGCATTGTCATAATAAAGGTGAT 57.202 29.630 0.00 0.00 0.00 3.06
3885 5395 8.103948 AGCATTGTCATAATAAAGGTGATAGC 57.896 34.615 0.00 0.00 0.00 2.97
3886 5396 7.720957 AGCATTGTCATAATAAAGGTGATAGCA 59.279 33.333 0.00 0.00 0.00 3.49
3887 5397 8.517878 GCATTGTCATAATAAAGGTGATAGCAT 58.482 33.333 0.00 0.00 0.00 3.79
3890 5400 8.978874 TGTCATAATAAAGGTGATAGCATTGT 57.021 30.769 0.00 0.00 0.00 2.71
3891 5401 9.056005 TGTCATAATAAAGGTGATAGCATTGTC 57.944 33.333 0.00 0.00 0.00 3.18
3892 5402 9.056005 GTCATAATAAAGGTGATAGCATTGTCA 57.944 33.333 0.00 0.00 0.00 3.58
3893 5403 9.797642 TCATAATAAAGGTGATAGCATTGTCAT 57.202 29.630 0.00 0.00 0.00 3.06
3967 5477 6.017440 TGTTTGTAGTAGTTGAGTTCATTGGC 60.017 38.462 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.075979 AACCTTCCTTCGTTACTCGC 57.924 50.000 0.00 0.00 39.67 5.03
1 2 3.505836 GGTAACCTTCCTTCGTTACTCG 58.494 50.000 9.28 0.00 42.50 4.18
34 35 3.730215 TCTGCAACCCTATTTTGGCTA 57.270 42.857 0.00 0.00 0.00 3.93
66 67 1.338337 GGATTGCTTCCTCGATCTCGA 59.662 52.381 1.92 1.92 46.44 4.04
72 73 0.175760 CCTTCGGATTGCTTCCTCGA 59.824 55.000 4.99 0.00 42.99 4.04
80 81 3.185246 TCTCTTCATCCTTCGGATTGC 57.815 47.619 0.00 0.00 39.79 3.56
93 94 6.409704 CACTCCATAATCCAACTTCTCTTCA 58.590 40.000 0.00 0.00 0.00 3.02
95 96 5.189180 GCACTCCATAATCCAACTTCTCTT 58.811 41.667 0.00 0.00 0.00 2.85
96 97 4.384647 GGCACTCCATAATCCAACTTCTCT 60.385 45.833 0.00 0.00 0.00 3.10
134 135 1.646540 CGTTTTGCCAACGCTCAGA 59.353 52.632 5.44 0.00 36.82 3.27
176 177 2.213499 GTTGGATATTGTCTGGGCGAG 58.787 52.381 0.00 0.00 0.00 5.03
248 249 4.826183 TGTCATCCAAACACATGAACATCA 59.174 37.500 0.00 0.00 30.76 3.07
259 260 3.735720 TGGGATCATGTCATCCAAACA 57.264 42.857 13.82 2.40 44.00 2.83
260 261 4.096984 GTCTTGGGATCATGTCATCCAAAC 59.903 45.833 13.82 10.29 44.00 2.93
336 337 0.322975 CCGATGAGGGGGATAAGCAG 59.677 60.000 0.00 0.00 35.97 4.24
337 338 1.768684 GCCGATGAGGGGGATAAGCA 61.769 60.000 0.00 0.00 41.48 3.91
348 349 2.338577 AATTCTTCTGGGCCGATGAG 57.661 50.000 0.00 0.00 0.00 2.90
349 350 2.368439 CAAATTCTTCTGGGCCGATGA 58.632 47.619 0.00 4.55 0.00 2.92
350 351 1.406539 CCAAATTCTTCTGGGCCGATG 59.593 52.381 0.00 2.09 0.00 3.84
351 352 1.284785 TCCAAATTCTTCTGGGCCGAT 59.715 47.619 0.00 0.00 33.19 4.18
353 354 1.767759 ATCCAAATTCTTCTGGGCCG 58.232 50.000 0.00 0.00 33.19 6.13
355 356 4.806640 TTCAATCCAAATTCTTCTGGGC 57.193 40.909 0.00 0.00 33.19 5.36
356 357 6.350629 AGTTTCAATCCAAATTCTTCTGGG 57.649 37.500 0.00 0.00 33.19 4.45
382 383 3.253188 CACGAAACCCTTCACATGATTGT 59.747 43.478 0.00 0.00 36.15 2.71
405 406 8.930846 ATGTTTATCATGAGCTTTATAGCCTT 57.069 30.769 0.09 0.00 40.74 4.35
432 433 1.019650 TCCTCCCTTTCTAGCCTCCT 58.980 55.000 0.00 0.00 0.00 3.69
436 437 4.838904 TTTAACTCCTCCCTTTCTAGCC 57.161 45.455 0.00 0.00 0.00 3.93
494 495 8.339714 TCCTTTGTACTAAGTTTTCGTGAATTG 58.660 33.333 14.61 0.00 0.00 2.32
501 502 5.916883 TCTCGTCCTTTGTACTAAGTTTTCG 59.083 40.000 14.61 12.48 0.00 3.46
547 548 5.121298 GGAAAATAACCGACGCTCTTTTAGT 59.879 40.000 0.00 0.00 0.00 2.24
566 567 4.021192 ACAGTATTACCTCCGTTCGGAAAA 60.021 41.667 14.79 9.81 33.41 2.29
627 628 7.115378 CCATAGCAATTTGTTCAAGTTCTCAAC 59.885 37.037 0.00 0.00 0.00 3.18
680 681 9.930693 AGACAAATATTTAAGAACGAAGAGAGT 57.069 29.630 0.00 0.00 0.00 3.24
702 703 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
703 704 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
704 705 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
705 706 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
711 712 9.307121 CGAATATAGTCACTTGTTGAAATCTCT 57.693 33.333 0.58 0.00 35.39 3.10
712 713 9.302345 TCGAATATAGTCACTTGTTGAAATCTC 57.698 33.333 0.58 0.00 35.39 2.75
713 714 9.653287 TTCGAATATAGTCACTTGTTGAAATCT 57.347 29.630 0.00 0.00 35.39 2.40
714 715 9.907576 CTTCGAATATAGTCACTTGTTGAAATC 57.092 33.333 0.00 0.00 35.39 2.17
717 718 6.871492 TGCTTCGAATATAGTCACTTGTTGAA 59.129 34.615 0.00 0.00 35.39 2.69
718 719 6.394809 TGCTTCGAATATAGTCACTTGTTGA 58.605 36.000 0.00 0.00 0.00 3.18
719 720 6.647212 TGCTTCGAATATAGTCACTTGTTG 57.353 37.500 0.00 0.00 0.00 3.33
720 721 7.667043 TTTGCTTCGAATATAGTCACTTGTT 57.333 32.000 0.00 0.00 0.00 2.83
722 723 8.390354 TCATTTTGCTTCGAATATAGTCACTTG 58.610 33.333 0.00 0.00 0.00 3.16
723 724 8.492673 TCATTTTGCTTCGAATATAGTCACTT 57.507 30.769 0.00 0.00 0.00 3.16
725 726 7.848051 CACTCATTTTGCTTCGAATATAGTCAC 59.152 37.037 0.00 0.00 0.00 3.67
726 727 7.763985 TCACTCATTTTGCTTCGAATATAGTCA 59.236 33.333 0.00 0.00 0.00 3.41
727 728 8.131455 TCACTCATTTTGCTTCGAATATAGTC 57.869 34.615 0.00 0.00 0.00 2.59
728 729 8.492673 TTCACTCATTTTGCTTCGAATATAGT 57.507 30.769 0.00 0.00 0.00 2.12
730 731 9.330063 AGATTCACTCATTTTGCTTCGAATATA 57.670 29.630 0.00 0.00 0.00 0.86
733 734 6.506500 AGATTCACTCATTTTGCTTCGAAT 57.493 33.333 0.00 0.00 0.00 3.34
735 736 5.931724 TGTAGATTCACTCATTTTGCTTCGA 59.068 36.000 0.00 0.00 0.00 3.71
736 737 6.169419 TGTAGATTCACTCATTTTGCTTCG 57.831 37.500 0.00 0.00 0.00 3.79
782 783 8.821686 ATTTCAAATGAACTACCACATATGGA 57.178 30.769 7.80 0.00 40.19 3.41
812 813 9.036671 CCTCCGTTGTTAAATATTTGTGTTTTT 57.963 29.630 11.05 0.00 0.00 1.94
813 814 7.654116 CCCTCCGTTGTTAAATATTTGTGTTTT 59.346 33.333 11.05 0.00 0.00 2.43
815 816 6.490721 TCCCTCCGTTGTTAAATATTTGTGTT 59.509 34.615 11.05 0.00 0.00 3.32
816 817 6.005198 TCCCTCCGTTGTTAAATATTTGTGT 58.995 36.000 11.05 0.00 0.00 3.72
818 819 6.243148 ACTCCCTCCGTTGTTAAATATTTGT 58.757 36.000 11.05 0.00 0.00 2.83
822 823 9.720769 CATAATACTCCCTCCGTTGTTAAATAT 57.279 33.333 0.00 0.00 0.00 1.28
823 824 8.152246 CCATAATACTCCCTCCGTTGTTAAATA 58.848 37.037 0.00 0.00 0.00 1.40
824 825 6.996282 CCATAATACTCCCTCCGTTGTTAAAT 59.004 38.462 0.00 0.00 0.00 1.40
825 826 6.156602 TCCATAATACTCCCTCCGTTGTTAAA 59.843 38.462 0.00 0.00 0.00 1.52
828 829 4.035112 TCCATAATACTCCCTCCGTTGTT 58.965 43.478 0.00 0.00 0.00 2.83
829 830 3.649843 TCCATAATACTCCCTCCGTTGT 58.350 45.455 0.00 0.00 0.00 3.32
830 831 4.322801 GGATCCATAATACTCCCTCCGTTG 60.323 50.000 6.95 0.00 0.00 4.10
835 836 3.840666 TGCAGGATCCATAATACTCCCTC 59.159 47.826 15.82 0.00 0.00 4.30
837 838 3.620966 GCTGCAGGATCCATAATACTCCC 60.621 52.174 17.12 0.00 0.00 4.30
838 839 3.008375 TGCTGCAGGATCCATAATACTCC 59.992 47.826 17.12 0.00 0.00 3.85
839 840 4.277515 TGCTGCAGGATCCATAATACTC 57.722 45.455 17.12 0.00 0.00 2.59
840 841 4.712051 TTGCTGCAGGATCCATAATACT 57.288 40.909 17.12 0.00 0.00 2.12
841 842 4.580167 TGTTTGCTGCAGGATCCATAATAC 59.420 41.667 17.12 2.22 0.00 1.89
871 2373 7.306574 CGAAGGCTGAAAATAAAGGACAAAAAC 60.307 37.037 0.00 0.00 0.00 2.43
896 2401 4.323477 TCCAGGGGTCGTTTGGCG 62.323 66.667 0.00 0.00 43.01 5.69
915 2420 1.153349 GATCACGGAAGGTCCAGCC 60.153 63.158 0.00 0.00 35.91 4.85
916 2421 1.153349 GGATCACGGAAGGTCCAGC 60.153 63.158 0.00 0.00 35.91 4.85
947 2452 0.476771 TTGGGCCTTCTTCTTTCCGT 59.523 50.000 4.53 0.00 0.00 4.69
972 2477 3.058914 CGCACTAGAAACTGGTTTTCCTG 60.059 47.826 0.00 0.00 44.32 3.86
980 2485 1.674611 CGCGACGCACTAGAAACTGG 61.675 60.000 21.35 0.00 0.00 4.00
991 2496 4.492160 GGACTCCATCGCGACGCA 62.492 66.667 21.35 7.55 0.00 5.24
1053 2561 3.751342 TGCGCTATCGGAGGAGAG 58.249 61.111 9.73 0.00 34.59 3.20
1221 2729 0.171455 AGGAGATGTGAACGTCGAGC 59.829 55.000 0.00 0.00 36.99 5.03
1228 2736 1.484240 CTGGAGGGAGGAGATGTGAAC 59.516 57.143 0.00 0.00 0.00 3.18
1229 2737 1.079490 ACTGGAGGGAGGAGATGTGAA 59.921 52.381 0.00 0.00 0.00 3.18
1344 2852 3.071023 TGGTGTCTTCGTCTCCTTGATTT 59.929 43.478 0.00 0.00 0.00 2.17
1359 2867 2.203640 TCCTCGCTGGTGGTGTCT 60.204 61.111 0.00 0.00 37.07 3.41
1445 2953 0.491823 TTCTTCCACCTCCTCCTCCA 59.508 55.000 0.00 0.00 0.00 3.86
1446 2954 1.199615 CTTCTTCCACCTCCTCCTCC 58.800 60.000 0.00 0.00 0.00 4.30
1447 2955 2.239681 TCTTCTTCCACCTCCTCCTC 57.760 55.000 0.00 0.00 0.00 3.71
1448 2956 2.158081 ACTTCTTCTTCCACCTCCTCCT 60.158 50.000 0.00 0.00 0.00 3.69
1449 2957 2.027653 CACTTCTTCTTCCACCTCCTCC 60.028 54.545 0.00 0.00 0.00 4.30
1450 2958 2.027653 CCACTTCTTCTTCCACCTCCTC 60.028 54.545 0.00 0.00 0.00 3.71
1451 2959 1.981495 CCACTTCTTCTTCCACCTCCT 59.019 52.381 0.00 0.00 0.00 3.69
1452 2960 1.978580 TCCACTTCTTCTTCCACCTCC 59.021 52.381 0.00 0.00 0.00 4.30
1453 2961 2.027653 CCTCCACTTCTTCTTCCACCTC 60.028 54.545 0.00 0.00 0.00 3.85
1454 2962 1.981495 CCTCCACTTCTTCTTCCACCT 59.019 52.381 0.00 0.00 0.00 4.00
1455 2963 1.700186 ACCTCCACTTCTTCTTCCACC 59.300 52.381 0.00 0.00 0.00 4.61
1456 2964 2.551071 CCACCTCCACTTCTTCTTCCAC 60.551 54.545 0.00 0.00 0.00 4.02
1457 2965 1.699634 CCACCTCCACTTCTTCTTCCA 59.300 52.381 0.00 0.00 0.00 3.53
1458 2966 1.978580 TCCACCTCCACTTCTTCTTCC 59.021 52.381 0.00 0.00 0.00 3.46
1459 2967 2.027653 CCTCCACCTCCACTTCTTCTTC 60.028 54.545 0.00 0.00 0.00 2.87
1460 2968 1.981495 CCTCCACCTCCACTTCTTCTT 59.019 52.381 0.00 0.00 0.00 2.52
1461 2969 1.150135 TCCTCCACCTCCACTTCTTCT 59.850 52.381 0.00 0.00 0.00 2.85
1462 2970 1.552792 CTCCTCCACCTCCACTTCTTC 59.447 57.143 0.00 0.00 0.00 2.87
1463 2971 1.650528 CTCCTCCACCTCCACTTCTT 58.349 55.000 0.00 0.00 0.00 2.52
1464 2972 0.252467 CCTCCTCCACCTCCACTTCT 60.252 60.000 0.00 0.00 0.00 2.85
1465 2973 0.252284 TCCTCCTCCACCTCCACTTC 60.252 60.000 0.00 0.00 0.00 3.01
1466 2974 0.252467 CTCCTCCTCCACCTCCACTT 60.252 60.000 0.00 0.00 0.00 3.16
1467 2975 1.390125 CTCCTCCTCCACCTCCACT 59.610 63.158 0.00 0.00 0.00 4.00
1468 2976 1.687493 CCTCCTCCTCCACCTCCAC 60.687 68.421 0.00 0.00 0.00 4.02
1469 2977 1.231751 ATCCTCCTCCTCCACCTCCA 61.232 60.000 0.00 0.00 0.00 3.86
1470 2978 0.762461 CATCCTCCTCCTCCACCTCC 60.762 65.000 0.00 0.00 0.00 4.30
1471 2979 1.406860 GCATCCTCCTCCTCCACCTC 61.407 65.000 0.00 0.00 0.00 3.85
1472 2980 1.383803 GCATCCTCCTCCTCCACCT 60.384 63.158 0.00 0.00 0.00 4.00
1473 2981 1.383803 AGCATCCTCCTCCTCCACC 60.384 63.158 0.00 0.00 0.00 4.61
1474 2982 0.689080 TCAGCATCCTCCTCCTCCAC 60.689 60.000 0.00 0.00 0.00 4.02
1501 3009 1.002544 CTCCTCTTCCACAACCACCTC 59.997 57.143 0.00 0.00 0.00 3.85
1503 3011 0.036875 CCTCCTCTTCCACAACCACC 59.963 60.000 0.00 0.00 0.00 4.61
1505 3013 1.352083 CTCCTCCTCTTCCACAACCA 58.648 55.000 0.00 0.00 0.00 3.67
1516 3024 1.293683 ACCTCCTCCTCCTCCTCCTC 61.294 65.000 0.00 0.00 0.00 3.71
1517 3025 1.230819 ACCTCCTCCTCCTCCTCCT 60.231 63.158 0.00 0.00 0.00 3.69
1518 3026 1.231928 GACCTCCTCCTCCTCCTCC 59.768 68.421 0.00 0.00 0.00 4.30
1580 3088 3.793144 CGTCCTTCTGCGGCTTGC 61.793 66.667 0.00 0.00 46.70 4.01
1610 3118 2.975489 ACCTTCTCTTCTTCAGCTTCCA 59.025 45.455 0.00 0.00 0.00 3.53
1631 3139 4.706476 CCTCCAAAACCTTATGCTCATTCA 59.294 41.667 0.00 0.00 0.00 2.57
1673 3181 1.208293 CCTTCTCTACCTTGCAGTCCC 59.792 57.143 0.00 0.00 0.00 4.46
1712 3220 1.114627 CCCCATCTCATCGTCAGACA 58.885 55.000 0.41 0.00 0.00 3.41
1743 3251 2.359107 TTGGCTTCCTGCTGCTCG 60.359 61.111 0.00 0.00 42.39 5.03
1754 3262 3.297134 TCACAGAAACCTTCTTGGCTT 57.703 42.857 0.00 0.00 38.11 4.35
1839 3347 6.346758 GGTCGATGTTGTTGTTAAACACGATA 60.347 38.462 13.07 0.00 45.91 2.92
2009 3517 1.605710 CAGAAAGCTTGGGTGACACAG 59.394 52.381 8.08 0.00 0.00 3.66
2014 3522 1.165907 CGCACAGAAAGCTTGGGTGA 61.166 55.000 22.35 0.00 0.00 4.02
2192 3700 1.134670 GTGGGACAGTGCCATAGAGAC 60.135 57.143 18.06 0.00 40.94 3.36
2405 3913 4.641094 TGCTAAGTAACTCTAGAGCAGTCC 59.359 45.833 19.97 3.77 39.07 3.85
2456 3964 6.813293 TCTCAATCTCCTTTGATATGGTCA 57.187 37.500 0.00 0.00 35.20 4.02
2529 4037 7.848128 TCTCTTCCAAGATAGTAACCGATTTT 58.152 34.615 0.00 0.00 33.93 1.82
2664 4172 5.362556 TCTTGTGCTTCTTGTATTTCTGC 57.637 39.130 0.00 0.00 0.00 4.26
2703 4211 1.228124 TTGGCCAACTTGTCCCTCG 60.228 57.895 16.05 0.00 0.00 4.63
2714 4222 2.595954 TTTCCCCTGCACTTGGCCAA 62.596 55.000 19.25 19.25 43.89 4.52
2805 4313 0.693049 ATCTTGCGGAAGGACCAGTT 59.307 50.000 17.16 0.00 38.90 3.16
2934 4442 1.005294 CGACATTTGCTGCAACTGGC 61.005 55.000 28.60 26.42 45.13 4.85
2963 4471 4.470334 TTTTGCTGGAAAGGATTATGCC 57.530 40.909 0.00 0.00 0.00 4.40
2964 4472 5.052481 GGATTTTGCTGGAAAGGATTATGC 58.948 41.667 0.00 0.00 0.00 3.14
2982 4490 3.181448 ACGGATGGCGGTATAAAGGATTT 60.181 43.478 0.00 0.00 43.42 2.17
2997 4505 1.152963 GGGGTGGAATGACGGATGG 60.153 63.158 0.00 0.00 0.00 3.51
3067 4575 4.888326 ATGGCAGGCAATTCTTTACAAA 57.112 36.364 0.00 0.00 0.00 2.83
3280 4789 1.348696 AGTGTGGATGCATGTGTCTGA 59.651 47.619 2.46 0.00 0.00 3.27
3311 4820 0.904649 TGATCAGCGTTCCCTGTCAT 59.095 50.000 0.00 0.00 34.47 3.06
3317 4826 1.067142 TGTACAGTGATCAGCGTTCCC 60.067 52.381 0.00 0.00 0.00 3.97
3409 4918 6.755607 GTCTACCTACGAGATTTTAAACCCTG 59.244 42.308 0.00 0.00 0.00 4.45
3549 5058 1.003718 CTGAACGGTGACTTCCCCC 60.004 63.158 0.00 0.00 0.00 5.40
3665 5175 7.148188 TGGAAAATCTACTCATCATTCAACAGC 60.148 37.037 0.00 0.00 0.00 4.40
3675 5185 7.278875 ACAGGAAGATGGAAAATCTACTCATC 58.721 38.462 0.00 0.00 35.69 2.92
3680 5190 7.110155 TGGTTACAGGAAGATGGAAAATCTAC 58.890 38.462 0.00 0.00 0.00 2.59
3759 5269 6.209192 AGACAGTCATTCATTTTACATGGCAA 59.791 34.615 2.66 0.00 0.00 4.52
3797 5307 6.936900 GGATAATACATAGCACATTCACTGGT 59.063 38.462 0.00 0.00 0.00 4.00
3816 5326 3.654806 ACCAATCTAGCTGGCTGGATAAT 59.345 43.478 18.93 4.92 42.23 1.28
3817 5327 3.048600 ACCAATCTAGCTGGCTGGATAA 58.951 45.455 18.93 0.00 42.23 1.75
3840 5350 1.331214 ATCACCAACTGCAACCAAGG 58.669 50.000 0.00 0.00 0.00 3.61
3949 5459 4.327680 GGAAGCCAATGAACTCAACTACT 58.672 43.478 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.