Multiple sequence alignment - TraesCS4A01G205500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G205500 chr4A 100.000 3138 0 0 1 3138 497870084 497873221 0.000000e+00 5795
1 TraesCS4A01G205500 chr4A 94.186 602 27 1 5 606 301722508 301723101 0.000000e+00 911
2 TraesCS4A01G205500 chr5A 98.144 2317 34 3 637 2947 622284666 622286979 0.000000e+00 4032
3 TraesCS4A01G205500 chr5A 97.458 2321 46 2 640 2947 646846518 646844198 0.000000e+00 3947
4 TraesCS4A01G205500 chr5A 94.502 291 14 2 2664 2953 622286794 622287083 6.170000e-122 448
5 TraesCS4A01G205500 chr5A 94.502 291 15 1 2664 2953 646844384 646844094 6.170000e-122 448
6 TraesCS4A01G205500 chr5A 97.917 192 2 2 2949 3138 646843872 646843681 6.490000e-87 331
7 TraesCS4A01G205500 chr5A 96.859 191 5 1 2949 3138 622287305 622287495 5.050000e-83 318
8 TraesCS4A01G205500 chr2A 96.152 2313 57 13 640 2946 744249384 744251670 0.000000e+00 3749
9 TraesCS4A01G205500 chr2A 96.964 1021 17 1 1445 2465 13614425 13613419 0.000000e+00 1701
10 TraesCS4A01G205500 chr2A 92.689 383 28 0 2571 2953 13613423 13613041 1.270000e-153 553
11 TraesCS4A01G205500 chr2A 92.784 291 20 1 2664 2953 744251485 744251775 1.350000e-113 420
12 TraesCS4A01G205500 chr2A 97.382 191 4 1 2949 3138 744251915 744252105 1.090000e-84 324
13 TraesCS4A01G205500 chr2A 85.465 172 14 9 2949 3115 13612861 13612696 5.380000e-38 169
14 TraesCS4A01G205500 chr1D 92.452 2239 106 35 636 2846 3991053 3988850 0.000000e+00 3140
15 TraesCS4A01G205500 chr1D 95.288 191 8 1 2949 3138 3988110 3987920 5.090000e-78 302
16 TraesCS4A01G205500 chr2D 90.865 2255 143 32 640 2843 197263834 197266076 0.000000e+00 2964
17 TraesCS4A01G205500 chr6D 91.134 2222 128 34 640 2816 28642227 28640030 0.000000e+00 2948
18 TraesCS4A01G205500 chr5D 92.778 1994 78 27 640 2617 291306042 291304099 0.000000e+00 2824
19 TraesCS4A01G205500 chr5D 94.764 191 9 1 2949 3138 291303849 291303659 2.370000e-76 296
20 TraesCS4A01G205500 chr3B 91.889 2059 110 28 640 2650 30362189 30360140 0.000000e+00 2824
21 TraesCS4A01G205500 chr3B 94.241 191 10 1 2949 3138 30356409 30356219 1.100000e-74 291
22 TraesCS4A01G205500 chr3B 95.062 81 4 0 2410 2490 30360443 30360363 9.140000e-26 128
23 TraesCS4A01G205500 chr7B 88.641 2245 170 36 635 2839 638506699 638504500 0.000000e+00 2654
24 TraesCS4A01G205500 chr7B 85.792 183 19 4 2949 3127 638503732 638503553 1.490000e-43 187
25 TraesCS4A01G205500 chr4B 91.854 1780 114 17 640 2399 406244075 406242307 0.000000e+00 2455
26 TraesCS4A01G205500 chr4B 84.486 535 53 13 2445 2950 406242349 406241816 4.670000e-138 501
27 TraesCS4A01G205500 chr4B 88.288 333 39 0 2621 2953 406242194 406241862 1.750000e-107 399
28 TraesCS4A01G205500 chr2B 90.528 1837 114 23 1134 2933 50295236 50297049 0.000000e+00 2374
29 TraesCS4A01G205500 chr2B 91.209 819 58 8 640 1445 17528341 17527524 0.000000e+00 1101
30 TraesCS4A01G205500 chr2B 81.707 164 24 5 2949 3109 17525922 17525762 7.060000e-27 132
31 TraesCS4A01G205500 chr1A 90.377 239 17 5 89 327 305385046 305384814 3.040000e-80 309
32 TraesCS4A01G205500 chr1B 97.436 78 2 0 2410 2487 52698725 52698648 1.960000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G205500 chr4A 497870084 497873221 3137 False 5795.000000 5795 100.000000 1 3138 1 chr4A.!!$F2 3137
1 TraesCS4A01G205500 chr4A 301722508 301723101 593 False 911.000000 911 94.186000 5 606 1 chr4A.!!$F1 601
2 TraesCS4A01G205500 chr5A 622284666 622287495 2829 False 1599.333333 4032 96.501667 637 3138 3 chr5A.!!$F1 2501
3 TraesCS4A01G205500 chr5A 646843681 646846518 2837 True 1575.333333 3947 96.625667 640 3138 3 chr5A.!!$R1 2498
4 TraesCS4A01G205500 chr2A 744249384 744252105 2721 False 1497.666667 3749 95.439333 640 3138 3 chr2A.!!$F1 2498
5 TraesCS4A01G205500 chr2A 13612696 13614425 1729 True 807.666667 1701 91.706000 1445 3115 3 chr2A.!!$R1 1670
6 TraesCS4A01G205500 chr1D 3987920 3991053 3133 True 1721.000000 3140 93.870000 636 3138 2 chr1D.!!$R1 2502
7 TraesCS4A01G205500 chr2D 197263834 197266076 2242 False 2964.000000 2964 90.865000 640 2843 1 chr2D.!!$F1 2203
8 TraesCS4A01G205500 chr6D 28640030 28642227 2197 True 2948.000000 2948 91.134000 640 2816 1 chr6D.!!$R1 2176
9 TraesCS4A01G205500 chr5D 291303659 291306042 2383 True 1560.000000 2824 93.771000 640 3138 2 chr5D.!!$R1 2498
10 TraesCS4A01G205500 chr3B 30356219 30362189 5970 True 1081.000000 2824 93.730667 640 3138 3 chr3B.!!$R1 2498
11 TraesCS4A01G205500 chr7B 638503553 638506699 3146 True 1420.500000 2654 87.216500 635 3127 2 chr7B.!!$R1 2492
12 TraesCS4A01G205500 chr4B 406241816 406244075 2259 True 1118.333333 2455 88.209333 640 2953 3 chr4B.!!$R1 2313
13 TraesCS4A01G205500 chr2B 50295236 50297049 1813 False 2374.000000 2374 90.528000 1134 2933 1 chr2B.!!$F1 1799
14 TraesCS4A01G205500 chr2B 17525762 17528341 2579 True 616.500000 1101 86.458000 640 3109 2 chr2B.!!$R1 2469

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
240 241 0.033011 TGCTACTCTCCTCCCTGTCC 60.033 60.0 0.00 0.00 0.00 4.02 F
478 479 0.033504 ATACCCGAAGCATAGCACGG 59.966 55.0 16.35 16.35 44.78 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2135 2444 0.621571 AACAGCATGGCCCTCTCCTA 60.622 55.000 0.0 0.0 43.62 2.94 R
2344 2654 7.029563 CCAGCTTAAATTCAGTACAAATGTCC 58.970 38.462 0.0 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.301346 ACAGCAAACTTGAGGAACAGG 58.699 47.619 0.00 0.00 0.00 4.00
63 64 6.631971 TTCAGATAAAGCACAATGAACACA 57.368 33.333 0.00 0.00 0.00 3.72
64 65 6.000891 TCAGATAAAGCACAATGAACACAC 57.999 37.500 0.00 0.00 0.00 3.82
65 66 5.530543 TCAGATAAAGCACAATGAACACACA 59.469 36.000 0.00 0.00 0.00 3.72
66 67 6.039159 TCAGATAAAGCACAATGAACACACAA 59.961 34.615 0.00 0.00 0.00 3.33
67 68 6.864685 CAGATAAAGCACAATGAACACACAAT 59.135 34.615 0.00 0.00 0.00 2.71
68 69 8.022550 CAGATAAAGCACAATGAACACACAATA 58.977 33.333 0.00 0.00 0.00 1.90
69 70 8.575589 AGATAAAGCACAATGAACACACAATAA 58.424 29.630 0.00 0.00 0.00 1.40
70 71 9.190858 GATAAAGCACAATGAACACACAATAAA 57.809 29.630 0.00 0.00 0.00 1.40
71 72 9.709495 ATAAAGCACAATGAACACACAATAAAT 57.291 25.926 0.00 0.00 0.00 1.40
72 73 7.642071 AAGCACAATGAACACACAATAAATC 57.358 32.000 0.00 0.00 0.00 2.17
73 74 6.985117 AGCACAATGAACACACAATAAATCT 58.015 32.000 0.00 0.00 0.00 2.40
74 75 6.864685 AGCACAATGAACACACAATAAATCTG 59.135 34.615 0.00 0.00 0.00 2.90
75 76 6.642131 GCACAATGAACACACAATAAATCTGT 59.358 34.615 0.00 0.00 0.00 3.41
76 77 7.807433 GCACAATGAACACACAATAAATCTGTA 59.193 33.333 0.00 0.00 0.00 2.74
77 78 9.676195 CACAATGAACACACAATAAATCTGTAA 57.324 29.630 0.00 0.00 0.00 2.41
103 104 9.994017 ATCAGAATATCAGATTCAGATAGAGGA 57.006 33.333 0.00 1.83 34.11 3.71
104 105 9.819754 TCAGAATATCAGATTCAGATAGAGGAA 57.180 33.333 5.22 0.00 32.00 3.36
105 106 9.859427 CAGAATATCAGATTCAGATAGAGGAAC 57.141 37.037 5.22 0.00 32.00 3.62
106 107 9.599056 AGAATATCAGATTCAGATAGAGGAACA 57.401 33.333 5.22 0.00 32.00 3.18
107 108 9.859427 GAATATCAGATTCAGATAGAGGAACAG 57.141 37.037 5.22 0.00 32.00 3.16
108 109 6.669125 ATCAGATTCAGATAGAGGAACAGG 57.331 41.667 0.00 0.00 0.00 4.00
109 110 5.770919 TCAGATTCAGATAGAGGAACAGGA 58.229 41.667 0.00 0.00 0.00 3.86
110 111 5.596361 TCAGATTCAGATAGAGGAACAGGAC 59.404 44.000 0.00 0.00 0.00 3.85
111 112 5.362143 CAGATTCAGATAGAGGAACAGGACA 59.638 44.000 0.00 0.00 0.00 4.02
112 113 6.041865 CAGATTCAGATAGAGGAACAGGACAT 59.958 42.308 0.00 0.00 0.00 3.06
113 114 6.614906 AGATTCAGATAGAGGAACAGGACATT 59.385 38.462 0.00 0.00 0.00 2.71
114 115 5.860941 TCAGATAGAGGAACAGGACATTC 57.139 43.478 0.00 0.00 0.00 2.67
115 116 5.272402 TCAGATAGAGGAACAGGACATTCA 58.728 41.667 0.00 0.00 0.00 2.57
116 117 5.362143 TCAGATAGAGGAACAGGACATTCAG 59.638 44.000 0.00 0.00 0.00 3.02
117 118 5.362143 CAGATAGAGGAACAGGACATTCAGA 59.638 44.000 0.00 0.00 0.00 3.27
118 119 6.041865 CAGATAGAGGAACAGGACATTCAGAT 59.958 42.308 0.00 0.00 0.00 2.90
119 120 7.232330 CAGATAGAGGAACAGGACATTCAGATA 59.768 40.741 0.00 0.00 0.00 1.98
120 121 7.786943 AGATAGAGGAACAGGACATTCAGATAA 59.213 37.037 0.00 0.00 0.00 1.75
121 122 6.627087 AGAGGAACAGGACATTCAGATAAA 57.373 37.500 0.00 0.00 0.00 1.40
122 123 6.648192 AGAGGAACAGGACATTCAGATAAAG 58.352 40.000 0.00 0.00 0.00 1.85
123 124 5.749462 AGGAACAGGACATTCAGATAAAGG 58.251 41.667 0.00 0.00 0.00 3.11
124 125 4.884164 GGAACAGGACATTCAGATAAAGGG 59.116 45.833 0.00 0.00 0.00 3.95
125 126 5.339200 GGAACAGGACATTCAGATAAAGGGA 60.339 44.000 0.00 0.00 0.00 4.20
126 127 5.365021 ACAGGACATTCAGATAAAGGGAG 57.635 43.478 0.00 0.00 0.00 4.30
127 128 4.164988 ACAGGACATTCAGATAAAGGGAGG 59.835 45.833 0.00 0.00 0.00 4.30
128 129 3.718956 AGGACATTCAGATAAAGGGAGGG 59.281 47.826 0.00 0.00 0.00 4.30
129 130 3.481453 GACATTCAGATAAAGGGAGGGC 58.519 50.000 0.00 0.00 0.00 5.19
130 131 2.852449 ACATTCAGATAAAGGGAGGGCA 59.148 45.455 0.00 0.00 0.00 5.36
131 132 3.117738 ACATTCAGATAAAGGGAGGGCAG 60.118 47.826 0.00 0.00 0.00 4.85
132 133 2.568546 TCAGATAAAGGGAGGGCAGA 57.431 50.000 0.00 0.00 0.00 4.26
133 134 2.402564 TCAGATAAAGGGAGGGCAGAG 58.597 52.381 0.00 0.00 0.00 3.35
134 135 2.023015 TCAGATAAAGGGAGGGCAGAGA 60.023 50.000 0.00 0.00 0.00 3.10
135 136 2.978278 CAGATAAAGGGAGGGCAGAGAT 59.022 50.000 0.00 0.00 0.00 2.75
136 137 3.393941 CAGATAAAGGGAGGGCAGAGATT 59.606 47.826 0.00 0.00 0.00 2.40
137 138 3.650461 AGATAAAGGGAGGGCAGAGATTC 59.350 47.826 0.00 0.00 0.00 2.52
138 139 1.673767 AAAGGGAGGGCAGAGATTCA 58.326 50.000 0.00 0.00 0.00 2.57
139 140 1.211456 AAGGGAGGGCAGAGATTCAG 58.789 55.000 0.00 0.00 0.00 3.02
140 141 0.341258 AGGGAGGGCAGAGATTCAGA 59.659 55.000 0.00 0.00 0.00 3.27
141 142 1.061502 AGGGAGGGCAGAGATTCAGAT 60.062 52.381 0.00 0.00 0.00 2.90
142 143 2.180973 AGGGAGGGCAGAGATTCAGATA 59.819 50.000 0.00 0.00 0.00 1.98
143 144 2.566724 GGGAGGGCAGAGATTCAGATAG 59.433 54.545 0.00 0.00 0.00 2.08
144 145 3.505386 GGAGGGCAGAGATTCAGATAGA 58.495 50.000 0.00 0.00 0.00 1.98
145 146 3.511146 GGAGGGCAGAGATTCAGATAGAG 59.489 52.174 0.00 0.00 0.00 2.43
146 147 3.509442 AGGGCAGAGATTCAGATAGAGG 58.491 50.000 0.00 0.00 0.00 3.69
147 148 3.141838 AGGGCAGAGATTCAGATAGAGGA 59.858 47.826 0.00 0.00 0.00 3.71
148 149 3.900601 GGGCAGAGATTCAGATAGAGGAA 59.099 47.826 0.00 0.00 0.00 3.36
149 150 4.021192 GGGCAGAGATTCAGATAGAGGAAG 60.021 50.000 0.00 0.00 0.00 3.46
150 151 4.559153 GCAGAGATTCAGATAGAGGAAGC 58.441 47.826 0.00 0.00 0.00 3.86
151 152 4.039004 GCAGAGATTCAGATAGAGGAAGCA 59.961 45.833 0.00 0.00 32.13 3.91
152 153 5.279607 GCAGAGATTCAGATAGAGGAAGCAT 60.280 44.000 0.00 0.00 32.13 3.79
153 154 6.071447 GCAGAGATTCAGATAGAGGAAGCATA 60.071 42.308 0.00 0.00 32.13 3.14
154 155 7.315142 CAGAGATTCAGATAGAGGAAGCATAC 58.685 42.308 0.00 0.00 32.13 2.39
155 156 6.437162 AGAGATTCAGATAGAGGAAGCATACC 59.563 42.308 0.00 0.00 32.13 2.73
156 157 6.322126 AGATTCAGATAGAGGAAGCATACCT 58.678 40.000 0.00 0.00 40.80 3.08
157 158 6.786959 AGATTCAGATAGAGGAAGCATACCTT 59.213 38.462 0.00 0.00 37.93 3.50
158 159 5.798125 TCAGATAGAGGAAGCATACCTTG 57.202 43.478 0.00 0.00 37.93 3.61
159 160 5.211973 TCAGATAGAGGAAGCATACCTTGT 58.788 41.667 0.00 0.00 37.93 3.16
160 161 5.069648 TCAGATAGAGGAAGCATACCTTGTG 59.930 44.000 0.00 0.00 37.93 3.33
161 162 5.069648 CAGATAGAGGAAGCATACCTTGTGA 59.930 44.000 0.00 0.00 37.93 3.58
162 163 3.902881 AGAGGAAGCATACCTTGTGAG 57.097 47.619 0.00 0.00 37.93 3.51
163 164 2.093235 AGAGGAAGCATACCTTGTGAGC 60.093 50.000 0.00 0.00 37.93 4.26
164 165 1.009829 GGAAGCATACCTTGTGAGCG 58.990 55.000 0.00 0.00 32.78 5.03
165 166 0.375106 GAAGCATACCTTGTGAGCGC 59.625 55.000 0.00 0.00 32.78 5.92
166 167 1.026718 AAGCATACCTTGTGAGCGCC 61.027 55.000 2.29 0.00 30.99 6.53
167 168 2.813179 GCATACCTTGTGAGCGCCG 61.813 63.158 2.29 0.00 0.00 6.46
168 169 2.173669 CATACCTTGTGAGCGCCGG 61.174 63.158 2.29 0.00 0.00 6.13
169 170 3.385749 ATACCTTGTGAGCGCCGGG 62.386 63.158 2.29 0.00 0.00 5.73
183 184 4.802051 CGGGGCATGGAGGGTGTG 62.802 72.222 0.00 0.00 0.00 3.82
184 185 4.447342 GGGGCATGGAGGGTGTGG 62.447 72.222 0.00 0.00 0.00 4.17
185 186 3.661648 GGGCATGGAGGGTGTGGT 61.662 66.667 0.00 0.00 0.00 4.16
186 187 2.305607 GGGCATGGAGGGTGTGGTA 61.306 63.158 0.00 0.00 0.00 3.25
187 188 1.224592 GGCATGGAGGGTGTGGTAG 59.775 63.158 0.00 0.00 0.00 3.18
188 189 1.562672 GGCATGGAGGGTGTGGTAGT 61.563 60.000 0.00 0.00 0.00 2.73
189 190 1.200519 GCATGGAGGGTGTGGTAGTA 58.799 55.000 0.00 0.00 0.00 1.82
190 191 1.139058 GCATGGAGGGTGTGGTAGTAG 59.861 57.143 0.00 0.00 0.00 2.57
191 192 2.467880 CATGGAGGGTGTGGTAGTAGT 58.532 52.381 0.00 0.00 0.00 2.73
192 193 2.226962 TGGAGGGTGTGGTAGTAGTC 57.773 55.000 0.00 0.00 0.00 2.59
193 194 1.101331 GGAGGGTGTGGTAGTAGTCG 58.899 60.000 0.00 0.00 0.00 4.18
194 195 1.340405 GGAGGGTGTGGTAGTAGTCGA 60.340 57.143 0.00 0.00 0.00 4.20
195 196 2.652590 GAGGGTGTGGTAGTAGTCGAT 58.347 52.381 0.00 0.00 0.00 3.59
196 197 2.358267 GAGGGTGTGGTAGTAGTCGATG 59.642 54.545 0.00 0.00 0.00 3.84
197 198 2.025605 AGGGTGTGGTAGTAGTCGATGA 60.026 50.000 0.00 0.00 0.00 2.92
198 199 2.098770 GGGTGTGGTAGTAGTCGATGAC 59.901 54.545 0.00 0.00 0.00 3.06
199 200 3.015327 GGTGTGGTAGTAGTCGATGACT 58.985 50.000 4.70 4.70 45.54 3.41
200 201 3.065095 GGTGTGGTAGTAGTCGATGACTC 59.935 52.174 2.17 0.00 42.40 3.36
201 202 3.688185 GTGTGGTAGTAGTCGATGACTCA 59.312 47.826 2.17 0.00 42.40 3.41
202 203 3.939592 TGTGGTAGTAGTCGATGACTCAG 59.060 47.826 2.17 0.00 42.40 3.35
203 204 3.940221 GTGGTAGTAGTCGATGACTCAGT 59.060 47.826 2.17 0.00 42.40 3.41
204 205 4.034279 GTGGTAGTAGTCGATGACTCAGTC 59.966 50.000 2.17 0.00 42.40 3.51
205 206 3.245754 GGTAGTAGTCGATGACTCAGTCG 59.754 52.174 2.17 0.00 42.40 4.18
206 207 2.975266 AGTAGTCGATGACTCAGTCGT 58.025 47.619 0.00 0.00 42.40 4.34
207 208 2.673862 AGTAGTCGATGACTCAGTCGTG 59.326 50.000 3.57 0.00 42.40 4.35
208 209 1.524848 AGTCGATGACTCAGTCGTGT 58.475 50.000 3.57 0.00 38.71 4.49
209 210 1.465387 AGTCGATGACTCAGTCGTGTC 59.535 52.381 3.57 0.00 38.71 3.67
210 211 0.803117 TCGATGACTCAGTCGTGTCC 59.197 55.000 3.57 0.00 38.85 4.02
211 212 0.179161 CGATGACTCAGTCGTGTCCC 60.179 60.000 3.57 0.00 35.26 4.46
212 213 1.178276 GATGACTCAGTCGTGTCCCT 58.822 55.000 3.57 0.00 35.26 4.20
213 214 1.133407 GATGACTCAGTCGTGTCCCTC 59.867 57.143 3.57 0.00 35.26 4.30
214 215 1.235281 TGACTCAGTCGTGTCCCTCG 61.235 60.000 0.00 0.00 35.26 4.63
215 216 1.228184 ACTCAGTCGTGTCCCTCGT 60.228 57.895 0.00 0.00 0.00 4.18
216 217 1.235948 ACTCAGTCGTGTCCCTCGTC 61.236 60.000 0.00 0.00 0.00 4.20
217 218 0.956410 CTCAGTCGTGTCCCTCGTCT 60.956 60.000 0.00 0.00 0.00 4.18
218 219 0.536687 TCAGTCGTGTCCCTCGTCTT 60.537 55.000 0.00 0.00 0.00 3.01
219 220 0.387367 CAGTCGTGTCCCTCGTCTTG 60.387 60.000 0.00 0.00 0.00 3.02
220 221 1.733399 GTCGTGTCCCTCGTCTTGC 60.733 63.158 0.00 0.00 0.00 4.01
221 222 1.901948 TCGTGTCCCTCGTCTTGCT 60.902 57.895 0.00 0.00 0.00 3.91
222 223 1.734477 CGTGTCCCTCGTCTTGCTG 60.734 63.158 0.00 0.00 0.00 4.41
223 224 2.029844 GTGTCCCTCGTCTTGCTGC 61.030 63.158 0.00 0.00 0.00 5.25
224 225 2.210013 TGTCCCTCGTCTTGCTGCT 61.210 57.895 0.00 0.00 0.00 4.24
225 226 0.898326 TGTCCCTCGTCTTGCTGCTA 60.898 55.000 0.00 0.00 0.00 3.49
226 227 0.458716 GTCCCTCGTCTTGCTGCTAC 60.459 60.000 0.00 0.00 0.00 3.58
227 228 0.612174 TCCCTCGTCTTGCTGCTACT 60.612 55.000 0.00 0.00 0.00 2.57
228 229 0.179124 CCCTCGTCTTGCTGCTACTC 60.179 60.000 0.00 0.00 0.00 2.59
229 230 0.814457 CCTCGTCTTGCTGCTACTCT 59.186 55.000 0.00 0.00 0.00 3.24
230 231 1.202245 CCTCGTCTTGCTGCTACTCTC 60.202 57.143 0.00 0.00 0.00 3.20
231 232 0.811915 TCGTCTTGCTGCTACTCTCC 59.188 55.000 0.00 0.00 0.00 3.71
232 233 0.814457 CGTCTTGCTGCTACTCTCCT 59.186 55.000 0.00 0.00 0.00 3.69
233 234 1.202245 CGTCTTGCTGCTACTCTCCTC 60.202 57.143 0.00 0.00 0.00 3.71
234 235 1.136110 GTCTTGCTGCTACTCTCCTCC 59.864 57.143 0.00 0.00 0.00 4.30
235 236 0.463620 CTTGCTGCTACTCTCCTCCC 59.536 60.000 0.00 0.00 0.00 4.30
236 237 0.041833 TTGCTGCTACTCTCCTCCCT 59.958 55.000 0.00 0.00 0.00 4.20
237 238 0.685785 TGCTGCTACTCTCCTCCCTG 60.686 60.000 0.00 0.00 0.00 4.45
238 239 0.686112 GCTGCTACTCTCCTCCCTGT 60.686 60.000 0.00 0.00 0.00 4.00
239 240 1.398692 CTGCTACTCTCCTCCCTGTC 58.601 60.000 0.00 0.00 0.00 3.51
240 241 0.033011 TGCTACTCTCCTCCCTGTCC 60.033 60.000 0.00 0.00 0.00 4.02
241 242 0.033011 GCTACTCTCCTCCCTGTCCA 60.033 60.000 0.00 0.00 0.00 4.02
242 243 2.026905 GCTACTCTCCTCCCTGTCCAG 61.027 61.905 0.00 0.00 0.00 3.86
251 252 2.923035 CCTGTCCAGGTCACCCGT 60.923 66.667 5.11 0.00 43.61 5.28
252 253 2.343758 CTGTCCAGGTCACCCGTG 59.656 66.667 0.00 0.00 35.12 4.94
253 254 3.883744 CTGTCCAGGTCACCCGTGC 62.884 68.421 0.00 0.00 35.12 5.34
254 255 3.626924 GTCCAGGTCACCCGTGCT 61.627 66.667 0.00 0.00 35.12 4.40
255 256 3.625897 TCCAGGTCACCCGTGCTG 61.626 66.667 0.00 0.00 35.12 4.41
257 258 4.320456 CAGGTCACCCGTGCTGCT 62.320 66.667 0.00 0.00 35.12 4.24
258 259 4.008933 AGGTCACCCGTGCTGCTC 62.009 66.667 0.00 0.00 35.12 4.26
260 261 4.314440 GTCACCCGTGCTGCTCCA 62.314 66.667 0.00 0.00 0.00 3.86
261 262 4.007644 TCACCCGTGCTGCTCCAG 62.008 66.667 0.00 0.00 34.12 3.86
264 265 4.767255 CCCGTGCTGCTCCAGGAC 62.767 72.222 6.78 6.78 46.73 3.85
268 269 2.580815 TGCTGCTCCAGGACATCG 59.419 61.111 0.00 0.00 31.21 3.84
269 270 2.894387 GCTGCTCCAGGACATCGC 60.894 66.667 0.00 0.00 31.21 4.58
270 271 2.202987 CTGCTCCAGGACATCGCC 60.203 66.667 0.00 0.00 0.00 5.54
271 272 4.147449 TGCTCCAGGACATCGCCG 62.147 66.667 0.00 0.00 0.00 6.46
272 273 4.148825 GCTCCAGGACATCGCCGT 62.149 66.667 0.00 0.00 0.00 5.68
273 274 2.105128 CTCCAGGACATCGCCGTC 59.895 66.667 0.00 0.00 35.03 4.79
274 275 3.758088 CTCCAGGACATCGCCGTCG 62.758 68.421 0.00 0.00 36.73 5.12
275 276 4.129737 CCAGGACATCGCCGTCGT 62.130 66.667 0.00 0.00 36.73 4.34
276 277 2.579787 CAGGACATCGCCGTCGTC 60.580 66.667 0.99 0.99 36.73 4.20
277 278 4.175489 AGGACATCGCCGTCGTCG 62.175 66.667 0.00 0.00 36.73 5.12
278 279 4.471726 GGACATCGCCGTCGTCGT 62.472 66.667 0.71 0.00 36.73 4.34
279 280 2.400798 GACATCGCCGTCGTCGTA 59.599 61.111 0.71 0.00 36.96 3.43
280 281 1.931612 GACATCGCCGTCGTCGTAC 60.932 63.158 0.71 0.00 36.96 3.67
281 282 2.301902 GACATCGCCGTCGTCGTACT 62.302 60.000 0.71 0.00 36.96 2.73
282 283 1.650536 CATCGCCGTCGTCGTACTC 60.651 63.158 0.71 0.00 36.96 2.59
283 284 2.817423 ATCGCCGTCGTCGTACTCC 61.817 63.158 0.71 0.00 36.96 3.85
284 285 3.494336 CGCCGTCGTCGTACTCCT 61.494 66.667 0.71 0.00 35.01 3.69
285 286 2.402787 GCCGTCGTCGTACTCCTC 59.597 66.667 0.71 0.00 35.01 3.71
286 287 2.393768 GCCGTCGTCGTACTCCTCA 61.394 63.158 0.71 0.00 35.01 3.86
287 288 1.712977 GCCGTCGTCGTACTCCTCAT 61.713 60.000 0.71 0.00 35.01 2.90
288 289 0.731417 CCGTCGTCGTACTCCTCATT 59.269 55.000 0.71 0.00 35.01 2.57
289 290 1.131883 CCGTCGTCGTACTCCTCATTT 59.868 52.381 0.71 0.00 35.01 2.32
290 291 2.174764 CGTCGTCGTACTCCTCATTTG 58.825 52.381 0.00 0.00 0.00 2.32
291 292 2.159612 CGTCGTCGTACTCCTCATTTGA 60.160 50.000 0.00 0.00 0.00 2.69
292 293 3.427243 GTCGTCGTACTCCTCATTTGAG 58.573 50.000 0.39 0.39 41.71 3.02
293 294 2.159421 TCGTCGTACTCCTCATTTGAGC 60.159 50.000 1.90 0.00 40.75 4.26
294 295 2.159366 CGTCGTACTCCTCATTTGAGCT 60.159 50.000 1.90 0.00 40.75 4.09
295 296 3.440228 GTCGTACTCCTCATTTGAGCTC 58.560 50.000 6.82 6.82 40.75 4.09
296 297 2.097629 TCGTACTCCTCATTTGAGCTCG 59.902 50.000 9.64 0.00 40.75 5.03
297 298 2.197577 GTACTCCTCATTTGAGCTCGC 58.802 52.381 9.64 0.00 40.75 5.03
298 299 0.610174 ACTCCTCATTTGAGCTCGCA 59.390 50.000 9.64 0.00 40.75 5.10
299 300 1.002430 ACTCCTCATTTGAGCTCGCAA 59.998 47.619 9.64 4.85 40.75 4.85
300 301 2.079158 CTCCTCATTTGAGCTCGCAAA 58.921 47.619 9.64 6.13 41.49 3.68
301 302 2.079158 TCCTCATTTGAGCTCGCAAAG 58.921 47.619 9.64 1.86 40.68 2.77
302 303 1.131883 CCTCATTTGAGCTCGCAAAGG 59.868 52.381 9.64 7.68 40.68 3.11
303 304 1.131883 CTCATTTGAGCTCGCAAAGGG 59.868 52.381 9.64 0.00 40.68 3.95
304 305 0.171903 CATTTGAGCTCGCAAAGGGG 59.828 55.000 9.64 0.00 40.68 4.79
305 306 0.038166 ATTTGAGCTCGCAAAGGGGA 59.962 50.000 9.64 0.00 40.68 4.81
310 311 4.404691 CTCGCAAAGGGGAGCTTT 57.595 55.556 0.00 0.00 45.53 3.51
311 312 2.646121 CTCGCAAAGGGGAGCTTTT 58.354 52.632 0.00 0.00 45.53 2.27
312 313 1.821216 CTCGCAAAGGGGAGCTTTTA 58.179 50.000 0.00 0.00 45.53 1.52
313 314 1.740025 CTCGCAAAGGGGAGCTTTTAG 59.260 52.381 0.00 0.00 45.53 1.85
314 315 0.171231 CGCAAAGGGGAGCTTTTAGC 59.829 55.000 0.00 0.00 42.84 3.09
315 316 1.256812 GCAAAGGGGAGCTTTTAGCA 58.743 50.000 1.09 0.00 45.56 3.49
316 317 1.203287 GCAAAGGGGAGCTTTTAGCAG 59.797 52.381 1.09 0.00 45.56 4.24
317 318 1.203287 CAAAGGGGAGCTTTTAGCAGC 59.797 52.381 1.09 0.00 45.56 5.25
318 319 0.405585 AAGGGGAGCTTTTAGCAGCA 59.594 50.000 0.00 0.00 45.56 4.41
319 320 0.405585 AGGGGAGCTTTTAGCAGCAA 59.594 50.000 0.00 0.00 45.56 3.91
320 321 0.813821 GGGGAGCTTTTAGCAGCAAG 59.186 55.000 0.00 0.00 45.56 4.01
321 322 0.813821 GGGAGCTTTTAGCAGCAAGG 59.186 55.000 0.00 0.00 45.56 3.61
322 323 1.539157 GGAGCTTTTAGCAGCAAGGT 58.461 50.000 0.00 0.00 45.56 3.50
323 324 1.200948 GGAGCTTTTAGCAGCAAGGTG 59.799 52.381 0.65 0.00 45.56 4.00
324 325 1.200948 GAGCTTTTAGCAGCAAGGTGG 59.799 52.381 0.65 0.00 45.56 4.61
325 326 0.961753 GCTTTTAGCAGCAAGGTGGT 59.038 50.000 9.03 9.03 41.89 4.16
326 327 1.068264 GCTTTTAGCAGCAAGGTGGTC 60.068 52.381 7.27 0.00 41.89 4.02
327 328 1.197721 CTTTTAGCAGCAAGGTGGTCG 59.802 52.381 7.27 0.00 0.00 4.79
328 329 0.605319 TTTAGCAGCAAGGTGGTCGG 60.605 55.000 7.27 0.00 0.00 4.79
329 330 2.463589 TTAGCAGCAAGGTGGTCGGG 62.464 60.000 7.27 0.00 0.00 5.14
330 331 4.329545 GCAGCAAGGTGGTCGGGA 62.330 66.667 1.13 0.00 0.00 5.14
331 332 2.671070 CAGCAAGGTGGTCGGGAT 59.329 61.111 0.00 0.00 0.00 3.85
332 333 1.450312 CAGCAAGGTGGTCGGGATC 60.450 63.158 0.00 0.00 0.00 3.36
333 334 2.124695 GCAAGGTGGTCGGGATCC 60.125 66.667 1.92 1.92 0.00 3.36
360 361 3.490759 GACCTCGCCGACGACGTA 61.491 66.667 0.00 0.00 45.12 3.57
361 362 2.817423 GACCTCGCCGACGACGTAT 61.817 63.158 0.00 0.00 45.12 3.06
362 363 1.490693 GACCTCGCCGACGACGTATA 61.491 60.000 0.00 0.00 45.12 1.47
363 364 1.083144 CCTCGCCGACGACGTATAC 60.083 63.158 0.00 0.00 45.12 1.47
364 365 1.637934 CTCGCCGACGACGTATACA 59.362 57.895 0.00 0.00 45.12 2.29
365 366 0.382758 CTCGCCGACGACGTATACAG 60.383 60.000 0.00 0.00 45.12 2.74
366 367 2.002401 CGCCGACGACGTATACAGC 61.002 63.158 0.00 0.00 43.93 4.40
367 368 1.656569 GCCGACGACGTATACAGCC 60.657 63.158 0.00 0.00 37.88 4.85
368 369 2.020131 CCGACGACGTATACAGCCT 58.980 57.895 0.00 0.00 37.88 4.58
369 370 0.041488 CCGACGACGTATACAGCCTC 60.041 60.000 0.00 0.00 37.88 4.70
370 371 0.382758 CGACGACGTATACAGCCTCG 60.383 60.000 0.00 5.81 34.56 4.63
371 372 0.656786 GACGACGTATACAGCCTCGC 60.657 60.000 0.00 0.00 0.00 5.03
372 373 1.094073 ACGACGTATACAGCCTCGCT 61.094 55.000 0.00 0.00 40.77 4.93
382 383 4.570663 GCCTCGCTGACGCCGTAT 62.571 66.667 0.00 0.00 39.84 3.06
383 384 2.353607 CCTCGCTGACGCCGTATC 60.354 66.667 0.00 0.00 39.84 2.24
384 385 2.353607 CTCGCTGACGCCGTATCC 60.354 66.667 0.00 0.00 39.84 2.59
385 386 4.246206 TCGCTGACGCCGTATCCG 62.246 66.667 0.00 0.00 39.84 4.18
396 397 3.456663 CGTATCCGGTGACTCATCG 57.543 57.895 4.60 4.60 37.76 3.84
402 403 3.967886 CGGTGACTCATCGGCTTAT 57.032 52.632 3.59 0.00 34.00 1.73
403 404 2.225068 CGGTGACTCATCGGCTTATT 57.775 50.000 3.59 0.00 34.00 1.40
404 405 1.860950 CGGTGACTCATCGGCTTATTG 59.139 52.381 3.59 0.00 34.00 1.90
405 406 2.213499 GGTGACTCATCGGCTTATTGG 58.787 52.381 0.00 0.00 0.00 3.16
406 407 2.158957 GGTGACTCATCGGCTTATTGGA 60.159 50.000 0.00 0.00 0.00 3.53
407 408 3.495100 GGTGACTCATCGGCTTATTGGAT 60.495 47.826 0.00 0.00 0.00 3.41
408 409 3.743396 GTGACTCATCGGCTTATTGGATC 59.257 47.826 0.00 0.00 0.00 3.36
409 410 2.989840 GACTCATCGGCTTATTGGATCG 59.010 50.000 0.00 0.00 0.00 3.69
410 411 2.628178 ACTCATCGGCTTATTGGATCGA 59.372 45.455 0.00 0.00 0.00 3.59
411 412 3.069586 ACTCATCGGCTTATTGGATCGAA 59.930 43.478 0.00 0.00 33.53 3.71
412 413 4.058124 CTCATCGGCTTATTGGATCGAAA 58.942 43.478 0.00 0.00 33.53 3.46
413 414 4.058124 TCATCGGCTTATTGGATCGAAAG 58.942 43.478 0.00 0.00 33.53 2.62
414 415 2.833794 TCGGCTTATTGGATCGAAAGG 58.166 47.619 0.00 0.00 0.00 3.11
415 416 2.432874 TCGGCTTATTGGATCGAAAGGA 59.567 45.455 0.00 0.00 0.00 3.36
416 417 2.802816 CGGCTTATTGGATCGAAAGGAG 59.197 50.000 0.00 0.00 0.00 3.69
417 418 3.492656 CGGCTTATTGGATCGAAAGGAGA 60.493 47.826 0.00 0.00 0.00 3.71
418 419 4.061596 GGCTTATTGGATCGAAAGGAGAG 58.938 47.826 0.00 0.00 0.00 3.20
419 420 3.496507 GCTTATTGGATCGAAAGGAGAGC 59.503 47.826 0.00 0.00 0.00 4.09
420 421 2.629336 ATTGGATCGAAAGGAGAGCC 57.371 50.000 0.00 0.00 43.92 4.70
431 432 0.621082 AGGAGAGCCTTTTAGGTGGC 59.379 55.000 0.00 0.00 43.90 5.01
436 437 3.478540 GCCTTTTAGGTGGCGAGAT 57.521 52.632 0.00 0.00 39.71 2.75
437 438 1.017387 GCCTTTTAGGTGGCGAGATG 58.983 55.000 0.00 0.00 39.71 2.90
438 439 1.668419 CCTTTTAGGTGGCGAGATGG 58.332 55.000 0.00 0.00 0.00 3.51
439 440 1.209504 CCTTTTAGGTGGCGAGATGGA 59.790 52.381 0.00 0.00 0.00 3.41
440 441 2.555199 CTTTTAGGTGGCGAGATGGAG 58.445 52.381 0.00 0.00 0.00 3.86
441 442 0.178068 TTTAGGTGGCGAGATGGAGC 59.822 55.000 0.00 0.00 0.00 4.70
442 443 0.975556 TTAGGTGGCGAGATGGAGCA 60.976 55.000 0.00 0.00 34.54 4.26
443 444 1.676678 TAGGTGGCGAGATGGAGCAC 61.677 60.000 0.00 0.00 34.54 4.40
444 445 2.265739 GTGGCGAGATGGAGCACA 59.734 61.111 0.00 0.00 34.54 4.57
445 446 1.812922 GTGGCGAGATGGAGCACAG 60.813 63.158 0.00 0.00 34.54 3.66
446 447 2.894387 GGCGAGATGGAGCACAGC 60.894 66.667 0.00 0.00 35.17 4.40
447 448 3.260483 GCGAGATGGAGCACAGCG 61.260 66.667 0.00 0.00 41.32 5.18
448 449 3.260483 CGAGATGGAGCACAGCGC 61.260 66.667 0.00 0.00 41.32 5.92
449 450 2.125391 GAGATGGAGCACAGCGCA 60.125 61.111 11.47 0.00 46.13 6.09
450 451 1.742880 GAGATGGAGCACAGCGCAA 60.743 57.895 11.47 0.00 46.13 4.85
451 452 1.703438 GAGATGGAGCACAGCGCAAG 61.703 60.000 11.47 3.78 46.13 4.01
452 453 2.749044 ATGGAGCACAGCGCAAGG 60.749 61.111 11.47 0.14 46.13 3.61
476 477 1.797025 GGATACCCGAAGCATAGCAC 58.203 55.000 0.00 0.00 0.00 4.40
477 478 1.419374 GATACCCGAAGCATAGCACG 58.581 55.000 0.00 0.00 0.00 5.34
478 479 0.033504 ATACCCGAAGCATAGCACGG 59.966 55.000 16.35 16.35 44.78 4.94
479 480 2.638330 TACCCGAAGCATAGCACGGC 62.638 60.000 17.35 0.00 44.24 5.68
480 481 3.630148 CCGAAGCATAGCACGGCG 61.630 66.667 4.80 4.80 41.42 6.46
481 482 3.630148 CGAAGCATAGCACGGCGG 61.630 66.667 13.24 0.66 34.54 6.13
482 483 3.941836 GAAGCATAGCACGGCGGC 61.942 66.667 13.24 12.27 34.54 6.53
498 499 4.592192 GCGGCGAGCCAGAGCATA 62.592 66.667 12.98 0.00 43.56 3.14
499 500 2.355599 CGGCGAGCCAGAGCATAG 60.356 66.667 15.03 0.00 43.56 2.23
500 501 2.664518 GGCGAGCCAGAGCATAGC 60.665 66.667 9.58 0.00 43.56 2.97
501 502 3.034923 GCGAGCCAGAGCATAGCG 61.035 66.667 0.00 0.00 43.56 4.26
502 503 3.034923 CGAGCCAGAGCATAGCGC 61.035 66.667 0.00 0.00 43.56 5.92
523 524 3.869272 GGCGGCGACATGAAGCAG 61.869 66.667 12.98 13.74 34.54 4.24
524 525 2.815211 GCGGCGACATGAAGCAGA 60.815 61.111 12.98 0.00 34.54 4.26
525 526 2.806856 GCGGCGACATGAAGCAGAG 61.807 63.158 12.98 10.15 34.54 3.35
526 527 2.806856 CGGCGACATGAAGCAGAGC 61.807 63.158 0.00 4.11 34.54 4.09
527 528 2.699809 GCGACATGAAGCAGAGCG 59.300 61.111 0.00 0.00 0.00 5.03
528 529 2.699809 CGACATGAAGCAGAGCGC 59.300 61.111 0.00 0.00 42.91 5.92
605 606 4.121669 GAGAGCCAGCGAGCGACA 62.122 66.667 0.00 0.00 38.01 4.35
606 607 4.127040 AGAGCCAGCGAGCGACAG 62.127 66.667 0.00 0.00 38.01 3.51
607 608 4.121669 GAGCCAGCGAGCGACAGA 62.122 66.667 0.00 0.00 38.01 3.41
608 609 4.127040 AGCCAGCGAGCGACAGAG 62.127 66.667 0.00 0.00 38.01 3.35
609 610 4.121669 GCCAGCGAGCGACAGAGA 62.122 66.667 0.00 0.00 0.00 3.10
610 611 2.101965 CCAGCGAGCGACAGAGAG 59.898 66.667 0.00 0.00 0.00 3.20
611 612 2.101965 CAGCGAGCGACAGAGAGG 59.898 66.667 0.00 0.00 0.00 3.69
612 613 2.045829 AGCGAGCGACAGAGAGGA 60.046 61.111 0.00 0.00 0.00 3.71
613 614 1.453015 AGCGAGCGACAGAGAGGAT 60.453 57.895 0.00 0.00 0.00 3.24
614 615 1.299014 GCGAGCGACAGAGAGGATG 60.299 63.158 0.00 0.00 0.00 3.51
615 616 1.358402 CGAGCGACAGAGAGGATGG 59.642 63.158 0.00 0.00 0.00 3.51
616 617 1.098129 CGAGCGACAGAGAGGATGGA 61.098 60.000 0.00 0.00 0.00 3.41
617 618 0.383949 GAGCGACAGAGAGGATGGAC 59.616 60.000 0.00 0.00 0.00 4.02
618 619 0.033601 AGCGACAGAGAGGATGGACT 60.034 55.000 0.00 0.00 0.00 3.85
619 620 0.102120 GCGACAGAGAGGATGGACTG 59.898 60.000 0.00 0.00 36.58 3.51
620 621 0.102120 CGACAGAGAGGATGGACTGC 59.898 60.000 0.00 0.00 34.25 4.40
621 622 0.102120 GACAGAGAGGATGGACTGCG 59.898 60.000 0.00 0.00 34.25 5.18
622 623 1.326213 ACAGAGAGGATGGACTGCGG 61.326 60.000 0.00 0.00 34.25 5.69
623 624 1.760086 AGAGAGGATGGACTGCGGG 60.760 63.158 0.00 0.00 0.00 6.13
624 625 2.039624 AGAGGATGGACTGCGGGT 59.960 61.111 0.00 0.00 0.00 5.28
625 626 1.613630 AGAGGATGGACTGCGGGTT 60.614 57.895 0.00 0.00 0.00 4.11
626 627 1.450312 GAGGATGGACTGCGGGTTG 60.450 63.158 0.00 0.00 0.00 3.77
627 628 2.185310 GAGGATGGACTGCGGGTTGT 62.185 60.000 0.00 0.00 0.00 3.32
628 629 2.040544 GGATGGACTGCGGGTTGTG 61.041 63.158 0.00 0.00 0.00 3.33
629 630 1.302511 GATGGACTGCGGGTTGTGT 60.303 57.895 0.00 0.00 0.00 3.72
630 631 1.298859 GATGGACTGCGGGTTGTGTC 61.299 60.000 0.00 0.00 0.00 3.67
631 632 2.668550 GGACTGCGGGTTGTGTCC 60.669 66.667 0.00 0.00 41.52 4.02
632 633 2.668550 GACTGCGGGTTGTGTCCC 60.669 66.667 0.00 0.00 43.78 4.46
657 658 5.767816 AACGGAGTAAATTGCTGAAAACT 57.232 34.783 0.00 0.00 45.00 2.66
878 881 4.934989 GCTAGTTAAGCCCAGCGT 57.065 55.556 0.00 0.00 46.25 5.07
1299 1328 1.146152 CTGGGGTGTGGGAAAAAGGTA 59.854 52.381 0.00 0.00 0.00 3.08
2135 2444 3.370315 GCAGGAGATGGACAAGATCAAGT 60.370 47.826 0.00 0.00 0.00 3.16
2194 2503 1.613836 AGCAAGAGAAAAGGCACCTG 58.386 50.000 0.00 0.00 0.00 4.00
2249 2559 1.575447 GGCCACCAAGGGGAAGATCT 61.575 60.000 0.00 0.00 38.09 2.75
2914 7378 3.750501 CCCCAAATGTAGGGTAAGGTT 57.249 47.619 0.00 0.00 45.28 3.50
2915 7379 4.866327 CCCCAAATGTAGGGTAAGGTTA 57.134 45.455 0.00 0.00 45.28 2.85
3013 7948 3.649073 TCACACATAACAGAGGTTCACG 58.351 45.455 0.00 0.00 38.45 4.35
3027 7962 6.814644 CAGAGGTTCACGTAACATAAATACCA 59.185 38.462 0.00 0.00 40.08 3.25
3028 7963 6.815142 AGAGGTTCACGTAACATAAATACCAC 59.185 38.462 0.00 0.00 40.08 4.16
3029 7964 6.465948 AGGTTCACGTAACATAAATACCACA 58.534 36.000 0.00 0.00 40.08 4.17
3030 7965 7.107542 AGGTTCACGTAACATAAATACCACAT 58.892 34.615 0.00 0.00 40.08 3.21
3031 7966 8.259411 AGGTTCACGTAACATAAATACCACATA 58.741 33.333 0.00 0.00 40.08 2.29
3032 7967 8.545420 GGTTCACGTAACATAAATACCACATAG 58.455 37.037 0.00 0.00 40.08 2.23
3033 7968 9.090692 GTTCACGTAACATAAATACCACATAGT 57.909 33.333 0.00 0.00 38.05 2.12
3034 7969 9.656040 TTCACGTAACATAAATACCACATAGTT 57.344 29.630 0.00 0.00 0.00 2.24
3035 7970 9.656040 TCACGTAACATAAATACCACATAGTTT 57.344 29.630 0.00 0.00 0.00 2.66
3046 7981 9.802039 AAATACCACATAGTTTTTAGGACTCAA 57.198 29.630 0.00 0.00 0.00 3.02
3047 7982 9.802039 AATACCACATAGTTTTTAGGACTCAAA 57.198 29.630 0.00 0.00 0.00 2.69
3048 7983 9.975218 ATACCACATAGTTTTTAGGACTCAAAT 57.025 29.630 0.00 0.00 0.00 2.32
3049 7984 8.706322 ACCACATAGTTTTTAGGACTCAAATT 57.294 30.769 0.00 0.00 0.00 1.82
3050 7985 8.576442 ACCACATAGTTTTTAGGACTCAAATTG 58.424 33.333 0.00 0.00 0.00 2.32
3051 7986 8.792633 CCACATAGTTTTTAGGACTCAAATTGA 58.207 33.333 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.067180 AGTTTGCTGTTCATTGAGTGTGG 59.933 43.478 0.00 0.00 0.00 4.17
6 7 4.206375 TCCTCAAGTTTGCTGTTCATTGA 58.794 39.130 0.00 0.00 0.00 2.57
33 34 8.151141 TCATTGTGCTTTATCTGAATCTGATC 57.849 34.615 5.90 0.00 0.00 2.92
77 78 9.994017 TCCTCTATCTGAATCTGATATTCTGAT 57.006 33.333 18.15 18.15 43.87 2.90
78 79 9.819754 TTCCTCTATCTGAATCTGATATTCTGA 57.180 33.333 9.72 8.97 39.26 3.27
79 80 9.859427 GTTCCTCTATCTGAATCTGATATTCTG 57.141 37.037 9.72 0.57 0.00 3.02
80 81 9.599056 TGTTCCTCTATCTGAATCTGATATTCT 57.401 33.333 9.72 0.00 0.00 2.40
81 82 9.859427 CTGTTCCTCTATCTGAATCTGATATTC 57.141 37.037 9.72 0.00 0.00 1.75
82 83 8.814931 CCTGTTCCTCTATCTGAATCTGATATT 58.185 37.037 9.72 0.00 0.00 1.28
83 84 8.176105 TCCTGTTCCTCTATCTGAATCTGATAT 58.824 37.037 9.72 0.00 0.00 1.63
84 85 7.450014 GTCCTGTTCCTCTATCTGAATCTGATA 59.550 40.741 9.07 9.07 0.00 2.15
85 86 6.267471 GTCCTGTTCCTCTATCTGAATCTGAT 59.733 42.308 7.73 7.73 0.00 2.90
86 87 5.596361 GTCCTGTTCCTCTATCTGAATCTGA 59.404 44.000 0.00 0.00 0.00 3.27
87 88 5.362143 TGTCCTGTTCCTCTATCTGAATCTG 59.638 44.000 0.00 0.00 0.00 2.90
88 89 5.523588 TGTCCTGTTCCTCTATCTGAATCT 58.476 41.667 0.00 0.00 0.00 2.40
89 90 5.860941 TGTCCTGTTCCTCTATCTGAATC 57.139 43.478 0.00 0.00 0.00 2.52
90 91 6.385176 TGAATGTCCTGTTCCTCTATCTGAAT 59.615 38.462 0.00 0.00 0.00 2.57
91 92 5.721480 TGAATGTCCTGTTCCTCTATCTGAA 59.279 40.000 0.00 0.00 0.00 3.02
92 93 5.272402 TGAATGTCCTGTTCCTCTATCTGA 58.728 41.667 0.00 0.00 0.00 3.27
93 94 5.362143 TCTGAATGTCCTGTTCCTCTATCTG 59.638 44.000 0.00 0.00 0.00 2.90
94 95 5.523588 TCTGAATGTCCTGTTCCTCTATCT 58.476 41.667 0.00 0.00 0.00 1.98
95 96 5.860941 TCTGAATGTCCTGTTCCTCTATC 57.139 43.478 0.00 0.00 0.00 2.08
96 97 7.921041 TTATCTGAATGTCCTGTTCCTCTAT 57.079 36.000 0.00 0.00 0.00 1.98
97 98 7.147655 CCTTTATCTGAATGTCCTGTTCCTCTA 60.148 40.741 0.00 0.00 0.00 2.43
98 99 6.352565 CCTTTATCTGAATGTCCTGTTCCTCT 60.353 42.308 0.00 0.00 0.00 3.69
99 100 5.819901 CCTTTATCTGAATGTCCTGTTCCTC 59.180 44.000 0.00 0.00 0.00 3.71
100 101 5.339530 CCCTTTATCTGAATGTCCTGTTCCT 60.340 44.000 0.00 0.00 0.00 3.36
101 102 4.884164 CCCTTTATCTGAATGTCCTGTTCC 59.116 45.833 0.00 0.00 0.00 3.62
102 103 5.745227 TCCCTTTATCTGAATGTCCTGTTC 58.255 41.667 0.00 0.00 0.00 3.18
103 104 5.339530 CCTCCCTTTATCTGAATGTCCTGTT 60.340 44.000 0.00 0.00 0.00 3.16
104 105 4.164988 CCTCCCTTTATCTGAATGTCCTGT 59.835 45.833 0.00 0.00 0.00 4.00
105 106 4.445448 CCCTCCCTTTATCTGAATGTCCTG 60.445 50.000 0.00 0.00 0.00 3.86
106 107 3.718956 CCCTCCCTTTATCTGAATGTCCT 59.281 47.826 0.00 0.00 0.00 3.85
107 108 3.748989 GCCCTCCCTTTATCTGAATGTCC 60.749 52.174 0.00 0.00 0.00 4.02
108 109 3.117888 TGCCCTCCCTTTATCTGAATGTC 60.118 47.826 0.00 0.00 0.00 3.06
109 110 2.852449 TGCCCTCCCTTTATCTGAATGT 59.148 45.455 0.00 0.00 0.00 2.71
110 111 3.137176 TCTGCCCTCCCTTTATCTGAATG 59.863 47.826 0.00 0.00 0.00 2.67
111 112 3.393941 CTCTGCCCTCCCTTTATCTGAAT 59.606 47.826 0.00 0.00 0.00 2.57
112 113 2.774234 CTCTGCCCTCCCTTTATCTGAA 59.226 50.000 0.00 0.00 0.00 3.02
113 114 2.023015 TCTCTGCCCTCCCTTTATCTGA 60.023 50.000 0.00 0.00 0.00 3.27
114 115 2.402564 TCTCTGCCCTCCCTTTATCTG 58.597 52.381 0.00 0.00 0.00 2.90
115 116 2.877154 TCTCTGCCCTCCCTTTATCT 57.123 50.000 0.00 0.00 0.00 1.98
116 117 3.392616 TGAATCTCTGCCCTCCCTTTATC 59.607 47.826 0.00 0.00 0.00 1.75
117 118 3.393941 CTGAATCTCTGCCCTCCCTTTAT 59.606 47.826 0.00 0.00 0.00 1.40
118 119 2.774234 CTGAATCTCTGCCCTCCCTTTA 59.226 50.000 0.00 0.00 0.00 1.85
119 120 1.563410 CTGAATCTCTGCCCTCCCTTT 59.437 52.381 0.00 0.00 0.00 3.11
120 121 1.211456 CTGAATCTCTGCCCTCCCTT 58.789 55.000 0.00 0.00 0.00 3.95
121 122 0.341258 TCTGAATCTCTGCCCTCCCT 59.659 55.000 0.00 0.00 0.00 4.20
122 123 1.433121 ATCTGAATCTCTGCCCTCCC 58.567 55.000 0.00 0.00 0.00 4.30
123 124 3.505386 TCTATCTGAATCTCTGCCCTCC 58.495 50.000 0.00 0.00 0.00 4.30
124 125 3.511146 CCTCTATCTGAATCTCTGCCCTC 59.489 52.174 0.00 0.00 0.00 4.30
125 126 3.141838 TCCTCTATCTGAATCTCTGCCCT 59.858 47.826 0.00 0.00 0.00 5.19
126 127 3.505386 TCCTCTATCTGAATCTCTGCCC 58.495 50.000 0.00 0.00 0.00 5.36
127 128 4.561326 GCTTCCTCTATCTGAATCTCTGCC 60.561 50.000 0.00 0.00 0.00 4.85
128 129 4.039004 TGCTTCCTCTATCTGAATCTCTGC 59.961 45.833 0.00 0.00 0.00 4.26
129 130 5.787953 TGCTTCCTCTATCTGAATCTCTG 57.212 43.478 0.00 0.00 0.00 3.35
130 131 6.437162 GGTATGCTTCCTCTATCTGAATCTCT 59.563 42.308 0.00 0.00 0.00 3.10
131 132 6.437162 AGGTATGCTTCCTCTATCTGAATCTC 59.563 42.308 0.00 0.00 0.00 2.75
132 133 6.322126 AGGTATGCTTCCTCTATCTGAATCT 58.678 40.000 0.00 0.00 0.00 2.40
133 134 6.603940 AGGTATGCTTCCTCTATCTGAATC 57.396 41.667 0.00 0.00 0.00 2.52
134 135 6.328672 ACAAGGTATGCTTCCTCTATCTGAAT 59.671 38.462 0.00 0.00 33.76 2.57
135 136 5.663106 ACAAGGTATGCTTCCTCTATCTGAA 59.337 40.000 0.00 0.00 33.76 3.02
136 137 5.069648 CACAAGGTATGCTTCCTCTATCTGA 59.930 44.000 0.00 0.00 33.76 3.27
137 138 5.069648 TCACAAGGTATGCTTCCTCTATCTG 59.930 44.000 0.00 0.00 33.76 2.90
138 139 5.211973 TCACAAGGTATGCTTCCTCTATCT 58.788 41.667 0.00 0.00 33.76 1.98
139 140 5.537188 CTCACAAGGTATGCTTCCTCTATC 58.463 45.833 0.00 0.00 33.76 2.08
140 141 4.202305 GCTCACAAGGTATGCTTCCTCTAT 60.202 45.833 0.00 0.00 33.76 1.98
141 142 3.133003 GCTCACAAGGTATGCTTCCTCTA 59.867 47.826 0.00 0.00 33.76 2.43
142 143 2.093235 GCTCACAAGGTATGCTTCCTCT 60.093 50.000 0.00 0.00 33.76 3.69
143 144 2.284190 GCTCACAAGGTATGCTTCCTC 58.716 52.381 0.00 0.00 33.76 3.71
144 145 1.406069 CGCTCACAAGGTATGCTTCCT 60.406 52.381 0.00 0.00 36.81 3.36
145 146 1.009829 CGCTCACAAGGTATGCTTCC 58.990 55.000 0.00 0.00 0.00 3.46
146 147 0.375106 GCGCTCACAAGGTATGCTTC 59.625 55.000 0.00 0.00 0.00 3.86
147 148 1.026718 GGCGCTCACAAGGTATGCTT 61.027 55.000 7.64 0.00 0.00 3.91
148 149 1.450312 GGCGCTCACAAGGTATGCT 60.450 57.895 7.64 0.00 0.00 3.79
149 150 2.813179 CGGCGCTCACAAGGTATGC 61.813 63.158 7.64 0.00 0.00 3.14
150 151 2.173669 CCGGCGCTCACAAGGTATG 61.174 63.158 7.64 0.00 0.00 2.39
151 152 2.186903 CCGGCGCTCACAAGGTAT 59.813 61.111 7.64 0.00 0.00 2.73
152 153 4.077184 CCCGGCGCTCACAAGGTA 62.077 66.667 7.64 0.00 0.00 3.08
166 167 4.802051 CACACCCTCCATGCCCCG 62.802 72.222 0.00 0.00 0.00 5.73
167 168 4.447342 CCACACCCTCCATGCCCC 62.447 72.222 0.00 0.00 0.00 5.80
168 169 2.270874 CTACCACACCCTCCATGCCC 62.271 65.000 0.00 0.00 0.00 5.36
169 170 1.224592 CTACCACACCCTCCATGCC 59.775 63.158 0.00 0.00 0.00 4.40
170 171 1.139058 CTACTACCACACCCTCCATGC 59.861 57.143 0.00 0.00 0.00 4.06
171 172 2.431057 GACTACTACCACACCCTCCATG 59.569 54.545 0.00 0.00 0.00 3.66
172 173 2.748388 GACTACTACCACACCCTCCAT 58.252 52.381 0.00 0.00 0.00 3.41
173 174 1.615116 CGACTACTACCACACCCTCCA 60.615 57.143 0.00 0.00 0.00 3.86
174 175 1.101331 CGACTACTACCACACCCTCC 58.899 60.000 0.00 0.00 0.00 4.30
175 176 2.119801 TCGACTACTACCACACCCTC 57.880 55.000 0.00 0.00 0.00 4.30
176 177 2.025605 TCATCGACTACTACCACACCCT 60.026 50.000 0.00 0.00 0.00 4.34
177 178 2.098770 GTCATCGACTACTACCACACCC 59.901 54.545 0.00 0.00 0.00 4.61
178 179 3.015327 AGTCATCGACTACTACCACACC 58.985 50.000 0.00 0.00 41.51 4.16
179 180 3.688185 TGAGTCATCGACTACTACCACAC 59.312 47.826 1.67 0.00 43.53 3.82
180 181 3.939592 CTGAGTCATCGACTACTACCACA 59.060 47.826 0.00 0.00 43.53 4.17
181 182 3.940221 ACTGAGTCATCGACTACTACCAC 59.060 47.826 0.00 0.00 43.53 4.16
182 183 4.190001 GACTGAGTCATCGACTACTACCA 58.810 47.826 7.90 0.00 43.53 3.25
183 184 3.245754 CGACTGAGTCATCGACTACTACC 59.754 52.174 13.67 0.00 43.53 3.18
184 185 3.864583 ACGACTGAGTCATCGACTACTAC 59.135 47.826 22.99 0.00 43.53 2.73
185 186 3.864003 CACGACTGAGTCATCGACTACTA 59.136 47.826 22.99 0.00 43.53 1.82
186 187 2.673862 CACGACTGAGTCATCGACTACT 59.326 50.000 22.99 1.27 43.53 2.57
187 188 2.415857 ACACGACTGAGTCATCGACTAC 59.584 50.000 22.99 0.00 43.53 2.73
188 189 2.671888 GACACGACTGAGTCATCGACTA 59.328 50.000 22.99 0.00 43.53 2.59
189 190 1.465387 GACACGACTGAGTCATCGACT 59.535 52.381 22.99 12.16 46.42 4.18
190 191 1.466024 GGACACGACTGAGTCATCGAC 60.466 57.143 22.99 15.66 40.86 4.20
191 192 0.803117 GGACACGACTGAGTCATCGA 59.197 55.000 22.99 0.00 40.86 3.59
192 193 0.179161 GGGACACGACTGAGTCATCG 60.179 60.000 13.67 17.71 43.97 3.84
193 194 1.133407 GAGGGACACGACTGAGTCATC 59.867 57.143 13.67 6.68 37.43 2.92
194 195 1.178276 GAGGGACACGACTGAGTCAT 58.822 55.000 13.67 0.00 37.43 3.06
195 196 2.642425 GAGGGACACGACTGAGTCA 58.358 57.895 13.67 0.00 37.43 3.41
198 199 2.483002 AAGACGAGGGACACGACTGAG 61.483 57.143 0.00 0.00 45.77 3.35
199 200 0.536687 AAGACGAGGGACACGACTGA 60.537 55.000 0.00 0.00 45.77 3.41
200 201 0.387367 CAAGACGAGGGACACGACTG 60.387 60.000 0.00 0.00 45.77 3.51
205 206 2.029844 GCAGCAAGACGAGGGACAC 61.030 63.158 0.00 0.00 0.00 3.67
206 207 0.898326 TAGCAGCAAGACGAGGGACA 60.898 55.000 0.00 0.00 0.00 4.02
207 208 0.458716 GTAGCAGCAAGACGAGGGAC 60.459 60.000 0.00 0.00 0.00 4.46
208 209 0.612174 AGTAGCAGCAAGACGAGGGA 60.612 55.000 0.00 0.00 0.00 4.20
209 210 0.179124 GAGTAGCAGCAAGACGAGGG 60.179 60.000 0.00 0.00 0.00 4.30
210 211 0.814457 AGAGTAGCAGCAAGACGAGG 59.186 55.000 0.00 0.00 0.00 4.63
211 212 1.202245 GGAGAGTAGCAGCAAGACGAG 60.202 57.143 0.00 0.00 0.00 4.18
212 213 0.811915 GGAGAGTAGCAGCAAGACGA 59.188 55.000 0.00 0.00 0.00 4.20
213 214 0.814457 AGGAGAGTAGCAGCAAGACG 59.186 55.000 0.00 0.00 0.00 4.18
214 215 1.136110 GGAGGAGAGTAGCAGCAAGAC 59.864 57.143 0.00 0.00 0.00 3.01
215 216 1.479709 GGAGGAGAGTAGCAGCAAGA 58.520 55.000 0.00 0.00 0.00 3.02
216 217 0.463620 GGGAGGAGAGTAGCAGCAAG 59.536 60.000 0.00 0.00 0.00 4.01
217 218 0.041833 AGGGAGGAGAGTAGCAGCAA 59.958 55.000 0.00 0.00 0.00 3.91
218 219 0.685785 CAGGGAGGAGAGTAGCAGCA 60.686 60.000 0.00 0.00 0.00 4.41
219 220 0.686112 ACAGGGAGGAGAGTAGCAGC 60.686 60.000 0.00 0.00 0.00 5.25
220 221 1.398692 GACAGGGAGGAGAGTAGCAG 58.601 60.000 0.00 0.00 0.00 4.24
221 222 0.033011 GGACAGGGAGGAGAGTAGCA 60.033 60.000 0.00 0.00 0.00 3.49
222 223 0.033011 TGGACAGGGAGGAGAGTAGC 60.033 60.000 0.00 0.00 0.00 3.58
223 224 1.410932 CCTGGACAGGGAGGAGAGTAG 60.411 61.905 10.55 0.00 44.87 2.57
224 225 0.631753 CCTGGACAGGGAGGAGAGTA 59.368 60.000 10.55 0.00 44.87 2.59
225 226 1.390125 CCTGGACAGGGAGGAGAGT 59.610 63.158 10.55 0.00 44.87 3.24
226 227 4.371699 CCTGGACAGGGAGGAGAG 57.628 66.667 10.55 0.00 44.87 3.20
243 244 4.314440 TGGAGCAGCACGGGTGAC 62.314 66.667 2.38 0.00 32.22 3.67
244 245 4.007644 CTGGAGCAGCACGGGTGA 62.008 66.667 2.38 0.00 32.22 4.02
247 248 4.767255 GTCCTGGAGCAGCACGGG 62.767 72.222 0.00 8.37 34.34 5.28
248 249 3.320879 ATGTCCTGGAGCAGCACGG 62.321 63.158 0.00 0.00 0.00 4.94
249 250 1.812922 GATGTCCTGGAGCAGCACG 60.813 63.158 0.00 0.00 0.00 5.34
250 251 1.812922 CGATGTCCTGGAGCAGCAC 60.813 63.158 0.00 0.00 0.00 4.40
251 252 2.580815 CGATGTCCTGGAGCAGCA 59.419 61.111 0.00 0.00 0.00 4.41
252 253 2.894387 GCGATGTCCTGGAGCAGC 60.894 66.667 0.00 0.43 0.00 5.25
253 254 2.202987 GGCGATGTCCTGGAGCAG 60.203 66.667 0.00 0.00 0.00 4.24
254 255 4.147449 CGGCGATGTCCTGGAGCA 62.147 66.667 0.00 0.00 0.00 4.26
255 256 4.148825 ACGGCGATGTCCTGGAGC 62.149 66.667 16.62 0.00 0.00 4.70
256 257 2.105128 GACGGCGATGTCCTGGAG 59.895 66.667 16.62 0.00 32.61 3.86
257 258 3.822192 CGACGGCGATGTCCTGGA 61.822 66.667 16.62 0.00 40.82 3.86
258 259 4.129737 ACGACGGCGATGTCCTGG 62.130 66.667 22.49 0.00 41.64 4.45
259 260 2.579787 GACGACGGCGATGTCCTG 60.580 66.667 22.49 0.00 41.64 3.86
260 261 4.175489 CGACGACGGCGATGTCCT 62.175 66.667 22.49 0.00 41.64 3.85
261 262 3.099619 TACGACGACGGCGATGTCC 62.100 63.158 32.70 0.00 44.46 4.02
262 263 1.931612 GTACGACGACGGCGATGTC 60.932 63.158 32.70 19.18 44.46 3.06
263 264 2.099062 GTACGACGACGGCGATGT 59.901 61.111 32.70 18.36 44.46 3.06
264 265 1.650536 GAGTACGACGACGGCGATG 60.651 63.158 32.70 12.28 44.46 3.84
265 266 2.705826 GAGTACGACGACGGCGAT 59.294 61.111 32.70 16.57 44.46 4.58
266 267 3.490759 GGAGTACGACGACGGCGA 61.491 66.667 32.70 10.91 44.46 5.54
267 268 3.431683 GAGGAGTACGACGACGGCG 62.432 68.421 23.84 23.84 44.46 6.46
268 269 1.712977 ATGAGGAGTACGACGACGGC 61.713 60.000 12.58 0.00 44.46 5.68
269 270 0.731417 AATGAGGAGTACGACGACGG 59.269 55.000 12.58 0.00 44.46 4.79
270 271 2.159612 TCAAATGAGGAGTACGACGACG 60.160 50.000 5.58 5.58 45.75 5.12
271 272 3.427243 CTCAAATGAGGAGTACGACGAC 58.573 50.000 0.00 0.00 38.48 4.34
272 273 2.159421 GCTCAAATGAGGAGTACGACGA 60.159 50.000 12.09 0.00 42.29 4.20
273 274 2.159366 AGCTCAAATGAGGAGTACGACG 60.159 50.000 12.09 0.00 42.29 5.12
274 275 3.440228 GAGCTCAAATGAGGAGTACGAC 58.560 50.000 9.40 0.00 42.29 4.34
275 276 2.097629 CGAGCTCAAATGAGGAGTACGA 59.902 50.000 15.40 0.00 42.29 3.43
276 277 2.455032 CGAGCTCAAATGAGGAGTACG 58.545 52.381 15.40 0.00 42.29 3.67
277 278 2.197577 GCGAGCTCAAATGAGGAGTAC 58.802 52.381 15.40 0.00 42.29 2.73
278 279 1.824852 TGCGAGCTCAAATGAGGAGTA 59.175 47.619 15.40 0.00 42.29 2.59
279 280 0.610174 TGCGAGCTCAAATGAGGAGT 59.390 50.000 15.40 0.00 42.29 3.85
280 281 1.730501 TTGCGAGCTCAAATGAGGAG 58.269 50.000 15.40 0.00 42.29 3.69
281 282 2.079158 CTTTGCGAGCTCAAATGAGGA 58.921 47.619 15.40 0.00 42.29 3.71
282 283 1.131883 CCTTTGCGAGCTCAAATGAGG 59.868 52.381 15.40 9.82 42.29 3.86
283 284 1.131883 CCCTTTGCGAGCTCAAATGAG 59.868 52.381 15.40 6.05 44.75 2.90
284 285 1.167851 CCCTTTGCGAGCTCAAATGA 58.832 50.000 15.40 0.00 35.64 2.57
285 286 0.171903 CCCCTTTGCGAGCTCAAATG 59.828 55.000 15.40 9.38 35.64 2.32
286 287 0.038166 TCCCCTTTGCGAGCTCAAAT 59.962 50.000 15.40 0.00 35.64 2.32
287 288 0.606401 CTCCCCTTTGCGAGCTCAAA 60.606 55.000 15.40 7.46 35.01 2.69
288 289 1.003355 CTCCCCTTTGCGAGCTCAA 60.003 57.895 15.40 0.00 0.00 3.02
289 290 2.665000 CTCCCCTTTGCGAGCTCA 59.335 61.111 15.40 0.00 0.00 4.26
290 291 2.821810 GCTCCCCTTTGCGAGCTC 60.822 66.667 2.73 2.73 46.48 4.09
293 294 1.740025 CTAAAAGCTCCCCTTTGCGAG 59.260 52.381 0.00 0.00 42.82 5.03
294 295 1.821216 CTAAAAGCTCCCCTTTGCGA 58.179 50.000 0.00 0.00 42.82 5.10
295 296 0.171231 GCTAAAAGCTCCCCTTTGCG 59.829 55.000 0.00 0.00 42.82 4.85
296 297 1.203287 CTGCTAAAAGCTCCCCTTTGC 59.797 52.381 0.03 0.00 42.82 3.68
297 298 1.203287 GCTGCTAAAAGCTCCCCTTTG 59.797 52.381 0.03 0.00 42.82 2.77
298 299 1.203050 TGCTGCTAAAAGCTCCCCTTT 60.203 47.619 0.00 0.00 45.49 3.11
299 300 0.405585 TGCTGCTAAAAGCTCCCCTT 59.594 50.000 0.00 0.00 42.97 3.95
300 301 0.405585 TTGCTGCTAAAAGCTCCCCT 59.594 50.000 0.00 0.00 42.97 4.79
301 302 0.813821 CTTGCTGCTAAAAGCTCCCC 59.186 55.000 0.00 0.00 42.97 4.81
302 303 0.813821 CCTTGCTGCTAAAAGCTCCC 59.186 55.000 0.00 0.00 42.97 4.30
303 304 1.200948 CACCTTGCTGCTAAAAGCTCC 59.799 52.381 0.00 0.00 42.97 4.70
304 305 1.200948 CCACCTTGCTGCTAAAAGCTC 59.799 52.381 0.00 0.00 42.97 4.09
305 306 1.251251 CCACCTTGCTGCTAAAAGCT 58.749 50.000 0.00 0.00 42.97 3.74
306 307 0.961753 ACCACCTTGCTGCTAAAAGC 59.038 50.000 0.00 0.00 43.82 3.51
307 308 1.197721 CGACCACCTTGCTGCTAAAAG 59.802 52.381 0.00 0.00 0.00 2.27
308 309 1.234821 CGACCACCTTGCTGCTAAAA 58.765 50.000 0.00 0.00 0.00 1.52
309 310 0.605319 CCGACCACCTTGCTGCTAAA 60.605 55.000 0.00 0.00 0.00 1.85
310 311 1.003839 CCGACCACCTTGCTGCTAA 60.004 57.895 0.00 0.00 0.00 3.09
311 312 2.662596 CCGACCACCTTGCTGCTA 59.337 61.111 0.00 0.00 0.00 3.49
312 313 4.335647 CCCGACCACCTTGCTGCT 62.336 66.667 0.00 0.00 0.00 4.24
313 314 3.628646 ATCCCGACCACCTTGCTGC 62.629 63.158 0.00 0.00 0.00 5.25
314 315 1.450312 GATCCCGACCACCTTGCTG 60.450 63.158 0.00 0.00 0.00 4.41
315 316 2.670148 GGATCCCGACCACCTTGCT 61.670 63.158 0.00 0.00 0.00 3.91
316 317 2.124695 GGATCCCGACCACCTTGC 60.125 66.667 0.00 0.00 0.00 4.01
347 348 1.637934 CTGTATACGTCGTCGGCGA 59.362 57.895 27.88 8.66 45.79 5.54
348 349 2.002401 GCTGTATACGTCGTCGGCG 61.002 63.158 19.06 19.06 41.85 6.46
349 350 1.656569 GGCTGTATACGTCGTCGGC 60.657 63.158 0.00 4.33 41.85 5.54
350 351 0.041488 GAGGCTGTATACGTCGTCGG 60.041 60.000 0.00 0.00 41.85 4.79
351 352 0.382758 CGAGGCTGTATACGTCGTCG 60.383 60.000 18.12 18.12 39.76 5.12
352 353 0.656786 GCGAGGCTGTATACGTCGTC 60.657 60.000 0.00 10.68 44.73 4.20
353 354 1.094073 AGCGAGGCTGTATACGTCGT 61.094 55.000 2.21 2.21 44.73 4.34
354 355 1.647629 AGCGAGGCTGTATACGTCG 59.352 57.895 0.00 10.64 45.44 5.12
365 366 4.570663 ATACGGCGTCAGCGAGGC 62.571 66.667 19.21 12.62 46.35 4.70
366 367 2.353607 GATACGGCGTCAGCGAGG 60.354 66.667 19.21 0.00 46.35 4.63
367 368 2.353607 GGATACGGCGTCAGCGAG 60.354 66.667 19.21 0.00 46.35 5.03
379 380 0.318784 GCCGATGAGTCACCGGATAC 60.319 60.000 30.69 8.29 45.58 2.24
380 381 0.467474 AGCCGATGAGTCACCGGATA 60.467 55.000 30.69 0.00 45.58 2.59
381 382 1.330655 AAGCCGATGAGTCACCGGAT 61.331 55.000 30.69 22.24 45.58 4.18
382 383 0.681887 TAAGCCGATGAGTCACCGGA 60.682 55.000 30.69 5.82 45.58 5.14
383 384 0.389391 ATAAGCCGATGAGTCACCGG 59.611 55.000 22.47 22.47 45.51 5.28
384 385 1.860950 CAATAAGCCGATGAGTCACCG 59.139 52.381 0.00 0.00 0.00 4.94
385 386 2.158957 TCCAATAAGCCGATGAGTCACC 60.159 50.000 0.00 0.00 0.00 4.02
386 387 3.179443 TCCAATAAGCCGATGAGTCAC 57.821 47.619 0.00 0.00 0.00 3.67
387 388 3.552890 CGATCCAATAAGCCGATGAGTCA 60.553 47.826 0.00 0.00 0.00 3.41
388 389 2.989840 CGATCCAATAAGCCGATGAGTC 59.010 50.000 0.00 0.00 0.00 3.36
389 390 2.628178 TCGATCCAATAAGCCGATGAGT 59.372 45.455 0.00 0.00 0.00 3.41
390 391 3.303881 TCGATCCAATAAGCCGATGAG 57.696 47.619 0.00 0.00 0.00 2.90
391 392 3.744238 TTCGATCCAATAAGCCGATGA 57.256 42.857 0.00 0.00 0.00 2.92
392 393 3.187227 CCTTTCGATCCAATAAGCCGATG 59.813 47.826 0.00 0.00 0.00 3.84
393 394 3.071023 TCCTTTCGATCCAATAAGCCGAT 59.929 43.478 0.00 0.00 0.00 4.18
394 395 2.432874 TCCTTTCGATCCAATAAGCCGA 59.567 45.455 0.00 0.00 0.00 5.54
395 396 2.802816 CTCCTTTCGATCCAATAAGCCG 59.197 50.000 0.00 0.00 0.00 5.52
396 397 4.061596 CTCTCCTTTCGATCCAATAAGCC 58.938 47.826 0.00 0.00 0.00 4.35
397 398 3.496507 GCTCTCCTTTCGATCCAATAAGC 59.503 47.826 0.00 0.00 0.00 3.09
398 399 4.061596 GGCTCTCCTTTCGATCCAATAAG 58.938 47.826 0.00 0.00 0.00 1.73
399 400 3.711704 AGGCTCTCCTTTCGATCCAATAA 59.288 43.478 0.00 0.00 40.66 1.40
400 401 3.309296 AGGCTCTCCTTTCGATCCAATA 58.691 45.455 0.00 0.00 40.66 1.90
401 402 2.122768 AGGCTCTCCTTTCGATCCAAT 58.877 47.619 0.00 0.00 40.66 3.16
402 403 1.573108 AGGCTCTCCTTTCGATCCAA 58.427 50.000 0.00 0.00 40.66 3.53
403 404 3.306902 AGGCTCTCCTTTCGATCCA 57.693 52.632 0.00 0.00 40.66 3.41
419 420 1.209504 TCCATCTCGCCACCTAAAAGG 59.790 52.381 0.00 0.00 42.49 3.11
420 421 2.555199 CTCCATCTCGCCACCTAAAAG 58.445 52.381 0.00 0.00 0.00 2.27
421 422 1.406887 GCTCCATCTCGCCACCTAAAA 60.407 52.381 0.00 0.00 0.00 1.52
422 423 0.178068 GCTCCATCTCGCCACCTAAA 59.822 55.000 0.00 0.00 0.00 1.85
423 424 0.975556 TGCTCCATCTCGCCACCTAA 60.976 55.000 0.00 0.00 0.00 2.69
424 425 1.381191 TGCTCCATCTCGCCACCTA 60.381 57.895 0.00 0.00 0.00 3.08
425 426 2.685017 TGCTCCATCTCGCCACCT 60.685 61.111 0.00 0.00 0.00 4.00
426 427 2.512515 GTGCTCCATCTCGCCACC 60.513 66.667 0.00 0.00 0.00 4.61
427 428 1.812922 CTGTGCTCCATCTCGCCAC 60.813 63.158 0.00 0.00 0.00 5.01
428 429 2.580815 CTGTGCTCCATCTCGCCA 59.419 61.111 0.00 0.00 0.00 5.69
429 430 2.894387 GCTGTGCTCCATCTCGCC 60.894 66.667 0.00 0.00 0.00 5.54
430 431 3.260483 CGCTGTGCTCCATCTCGC 61.260 66.667 0.00 0.00 0.00 5.03
431 432 3.260483 GCGCTGTGCTCCATCTCG 61.260 66.667 5.84 0.00 41.73 4.04
432 433 1.703438 CTTGCGCTGTGCTCCATCTC 61.703 60.000 14.92 0.00 46.63 2.75
433 434 1.744368 CTTGCGCTGTGCTCCATCT 60.744 57.895 14.92 0.00 46.63 2.90
434 435 2.758089 CCTTGCGCTGTGCTCCATC 61.758 63.158 14.92 0.00 46.63 3.51
435 436 2.749044 CCTTGCGCTGTGCTCCAT 60.749 61.111 14.92 0.00 46.63 3.41
457 458 1.797025 GTGCTATGCTTCGGGTATCC 58.203 55.000 0.00 0.00 0.00 2.59
458 459 1.419374 CGTGCTATGCTTCGGGTATC 58.581 55.000 0.00 0.00 0.00 2.24
459 460 0.033504 CCGTGCTATGCTTCGGGTAT 59.966 55.000 14.64 0.00 40.51 2.73
460 461 1.440060 CCGTGCTATGCTTCGGGTA 59.560 57.895 14.64 0.00 40.51 3.69
461 462 2.186903 CCGTGCTATGCTTCGGGT 59.813 61.111 14.64 0.00 40.51 5.28
462 463 3.272334 GCCGTGCTATGCTTCGGG 61.272 66.667 20.16 6.63 42.67 5.14
463 464 3.630148 CGCCGTGCTATGCTTCGG 61.630 66.667 16.79 16.79 44.09 4.30
464 465 3.630148 CCGCCGTGCTATGCTTCG 61.630 66.667 0.00 0.00 0.00 3.79
465 466 3.941836 GCCGCCGTGCTATGCTTC 61.942 66.667 0.00 0.00 0.00 3.86
481 482 4.592192 TATGCTCTGGCTCGCCGC 62.592 66.667 3.14 1.49 39.42 6.53
482 483 2.355599 CTATGCTCTGGCTCGCCG 60.356 66.667 3.14 0.00 39.42 6.46
483 484 2.664518 GCTATGCTCTGGCTCGCC 60.665 66.667 0.00 0.00 39.59 5.54
484 485 3.034923 CGCTATGCTCTGGCTCGC 61.035 66.667 0.00 0.00 39.59 5.03
485 486 3.034923 GCGCTATGCTCTGGCTCG 61.035 66.667 0.00 0.00 41.73 5.03
486 487 3.034923 CGCGCTATGCTCTGGCTC 61.035 66.667 5.56 0.00 43.27 4.70
487 488 4.598894 CCGCGCTATGCTCTGGCT 62.599 66.667 5.56 0.00 43.27 4.75
506 507 3.869272 CTGCTTCATGTCGCCGCC 61.869 66.667 6.54 0.00 0.00 6.13
507 508 2.806856 CTCTGCTTCATGTCGCCGC 61.807 63.158 6.54 0.00 0.00 6.53
508 509 2.806856 GCTCTGCTTCATGTCGCCG 61.807 63.158 6.54 1.49 0.00 6.46
509 510 2.806856 CGCTCTGCTTCATGTCGCC 61.807 63.158 6.54 0.00 0.00 5.54
510 511 2.699809 CGCTCTGCTTCATGTCGC 59.300 61.111 0.00 0.00 0.00 5.19
511 512 2.699809 GCGCTCTGCTTCATGTCG 59.300 61.111 0.00 0.00 41.73 4.35
512 513 2.699809 CGCGCTCTGCTTCATGTC 59.300 61.111 5.56 0.00 43.27 3.06
513 514 2.816958 CCGCGCTCTGCTTCATGT 60.817 61.111 5.56 0.00 43.27 3.21
514 515 2.510012 TCCGCGCTCTGCTTCATG 60.510 61.111 5.56 0.00 43.27 3.07
515 516 2.202851 CTCCGCGCTCTGCTTCAT 60.203 61.111 5.56 0.00 43.27 2.57
516 517 4.441695 CCTCCGCGCTCTGCTTCA 62.442 66.667 5.56 0.00 43.27 3.02
588 589 4.121669 TGTCGCTCGCTGGCTCTC 62.122 66.667 0.00 0.00 0.00 3.20
589 590 4.127040 CTGTCGCTCGCTGGCTCT 62.127 66.667 0.00 0.00 0.00 4.09
590 591 4.121669 TCTGTCGCTCGCTGGCTC 62.122 66.667 0.00 0.00 0.00 4.70
591 592 4.127040 CTCTGTCGCTCGCTGGCT 62.127 66.667 0.00 0.00 0.00 4.75
592 593 4.121669 TCTCTGTCGCTCGCTGGC 62.122 66.667 0.00 0.00 0.00 4.85
593 594 2.101965 CTCTCTGTCGCTCGCTGG 59.898 66.667 0.00 0.00 0.00 4.85
594 595 1.723608 ATCCTCTCTGTCGCTCGCTG 61.724 60.000 0.00 0.00 0.00 5.18
595 596 1.453015 ATCCTCTCTGTCGCTCGCT 60.453 57.895 0.00 0.00 0.00 4.93
596 597 1.299014 CATCCTCTCTGTCGCTCGC 60.299 63.158 0.00 0.00 0.00 5.03
597 598 1.098129 TCCATCCTCTCTGTCGCTCG 61.098 60.000 0.00 0.00 0.00 5.03
598 599 0.383949 GTCCATCCTCTCTGTCGCTC 59.616 60.000 0.00 0.00 0.00 5.03
599 600 0.033601 AGTCCATCCTCTCTGTCGCT 60.034 55.000 0.00 0.00 0.00 4.93
600 601 0.102120 CAGTCCATCCTCTCTGTCGC 59.898 60.000 0.00 0.00 0.00 5.19
601 602 0.102120 GCAGTCCATCCTCTCTGTCG 59.898 60.000 0.00 0.00 0.00 4.35
602 603 0.102120 CGCAGTCCATCCTCTCTGTC 59.898 60.000 0.00 0.00 0.00 3.51
603 604 1.326213 CCGCAGTCCATCCTCTCTGT 61.326 60.000 0.00 0.00 0.00 3.41
604 605 1.440893 CCGCAGTCCATCCTCTCTG 59.559 63.158 0.00 0.00 0.00 3.35
605 606 1.760086 CCCGCAGTCCATCCTCTCT 60.760 63.158 0.00 0.00 0.00 3.10
606 607 1.617947 AACCCGCAGTCCATCCTCTC 61.618 60.000 0.00 0.00 0.00 3.20
607 608 1.613630 AACCCGCAGTCCATCCTCT 60.614 57.895 0.00 0.00 0.00 3.69
608 609 1.450312 CAACCCGCAGTCCATCCTC 60.450 63.158 0.00 0.00 0.00 3.71
609 610 2.224159 ACAACCCGCAGTCCATCCT 61.224 57.895 0.00 0.00 0.00 3.24
610 611 2.040544 CACAACCCGCAGTCCATCC 61.041 63.158 0.00 0.00 0.00 3.51
611 612 1.298859 GACACAACCCGCAGTCCATC 61.299 60.000 0.00 0.00 0.00 3.51
612 613 1.302511 GACACAACCCGCAGTCCAT 60.303 57.895 0.00 0.00 0.00 3.41
613 614 2.110213 GACACAACCCGCAGTCCA 59.890 61.111 0.00 0.00 0.00 4.02
614 615 2.668550 GGACACAACCCGCAGTCC 60.669 66.667 0.00 0.00 43.18 3.85
615 616 2.668550 GGGACACAACCCGCAGTC 60.669 66.667 0.00 0.00 40.49 3.51
621 622 0.752376 TCCGTTTTGGGACACAACCC 60.752 55.000 0.00 0.00 45.19 4.11
622 623 0.666374 CTCCGTTTTGGGACACAACC 59.334 55.000 0.00 0.00 45.19 3.77
623 624 1.385528 ACTCCGTTTTGGGACACAAC 58.614 50.000 0.00 0.00 44.62 3.32
624 625 3.278668 TTACTCCGTTTTGGGACACAA 57.721 42.857 0.00 0.00 39.29 3.33
625 626 3.278668 TTTACTCCGTTTTGGGACACA 57.721 42.857 0.00 0.00 39.29 3.72
626 627 4.542735 CAATTTACTCCGTTTTGGGACAC 58.457 43.478 0.00 0.00 39.29 3.67
627 628 3.004944 GCAATTTACTCCGTTTTGGGACA 59.995 43.478 0.00 0.00 38.76 4.02
628 629 3.254903 AGCAATTTACTCCGTTTTGGGAC 59.745 43.478 0.00 0.00 38.76 4.46
629 630 3.254657 CAGCAATTTACTCCGTTTTGGGA 59.745 43.478 0.00 0.00 38.76 4.37
630 631 3.254657 TCAGCAATTTACTCCGTTTTGGG 59.745 43.478 0.00 0.00 38.76 4.12
631 632 4.497473 TCAGCAATTTACTCCGTTTTGG 57.503 40.909 0.00 0.00 40.09 3.28
632 633 6.475402 AGTTTTCAGCAATTTACTCCGTTTTG 59.525 34.615 0.00 0.00 0.00 2.44
633 634 6.569780 AGTTTTCAGCAATTTACTCCGTTTT 58.430 32.000 0.00 0.00 0.00 2.43
634 635 6.144078 AGTTTTCAGCAATTTACTCCGTTT 57.856 33.333 0.00 0.00 0.00 3.60
635 636 5.767816 AGTTTTCAGCAATTTACTCCGTT 57.232 34.783 0.00 0.00 0.00 4.44
636 637 5.180680 GGTAGTTTTCAGCAATTTACTCCGT 59.819 40.000 0.00 0.00 0.00 4.69
637 638 5.180492 TGGTAGTTTTCAGCAATTTACTCCG 59.820 40.000 0.00 0.00 0.00 4.63
638 639 6.016610 TGTGGTAGTTTTCAGCAATTTACTCC 60.017 38.462 0.00 0.00 0.00 3.85
671 672 8.579850 AAAGTGATGATTTTGCAGTATCCTTA 57.420 30.769 7.43 0.00 0.00 2.69
878 881 2.359354 AATGCCCTAACGTGCGCA 60.359 55.556 5.66 5.66 35.35 6.09
1299 1328 9.136323 AGAAGTAATTGAACTGGTCAGAAAATT 57.864 29.630 4.84 9.29 37.61 1.82
2135 2444 0.621571 AACAGCATGGCCCTCTCCTA 60.622 55.000 0.00 0.00 43.62 2.94
2249 2559 8.082672 TCATCAACTATCTCTTTGATCTTCCA 57.917 34.615 0.00 0.00 39.86 3.53
2344 2654 7.029563 CCAGCTTAAATTCAGTACAAATGTCC 58.970 38.462 0.00 0.00 0.00 4.02
2861 7325 2.228822 TCGACGACAACCTAAACTACCC 59.771 50.000 0.00 0.00 0.00 3.69
2914 7378 2.037511 ACCCTCGACGACAACCAAAATA 59.962 45.455 0.00 0.00 0.00 1.40
2915 7379 1.202722 ACCCTCGACGACAACCAAAAT 60.203 47.619 0.00 0.00 0.00 1.82
3034 7969 9.362151 ACCTATGTTTCAATTTGAGTCCTAAAA 57.638 29.630 0.00 0.00 0.00 1.52
3035 7970 8.934023 ACCTATGTTTCAATTTGAGTCCTAAA 57.066 30.769 0.00 0.00 0.00 1.85
3036 7971 8.934023 AACCTATGTTTCAATTTGAGTCCTAA 57.066 30.769 0.00 0.00 0.00 2.69
3037 7972 8.160765 TGAACCTATGTTTCAATTTGAGTCCTA 58.839 33.333 0.00 0.00 33.97 2.94
3038 7973 7.004086 TGAACCTATGTTTCAATTTGAGTCCT 58.996 34.615 0.00 0.00 33.97 3.85
3039 7974 7.084486 GTGAACCTATGTTTCAATTTGAGTCC 58.916 38.462 0.00 0.00 33.97 3.85
3040 7975 7.648142 TGTGAACCTATGTTTCAATTTGAGTC 58.352 34.615 0.00 0.00 33.97 3.36
3041 7976 7.255590 CCTGTGAACCTATGTTTCAATTTGAGT 60.256 37.037 0.00 0.00 33.97 3.41
3042 7977 7.040478 TCCTGTGAACCTATGTTTCAATTTGAG 60.040 37.037 0.00 0.00 33.97 3.02
3043 7978 6.775142 TCCTGTGAACCTATGTTTCAATTTGA 59.225 34.615 0.00 0.00 33.97 2.69
3044 7979 6.863126 GTCCTGTGAACCTATGTTTCAATTTG 59.137 38.462 0.00 0.00 33.97 2.32
3045 7980 6.777580 AGTCCTGTGAACCTATGTTTCAATTT 59.222 34.615 0.00 0.00 33.97 1.82
3046 7981 6.207417 CAGTCCTGTGAACCTATGTTTCAATT 59.793 38.462 0.00 0.00 33.97 2.32
3047 7982 5.707298 CAGTCCTGTGAACCTATGTTTCAAT 59.293 40.000 0.00 0.00 33.97 2.57
3048 7983 5.063204 CAGTCCTGTGAACCTATGTTTCAA 58.937 41.667 0.00 0.00 33.97 2.69
3049 7984 4.346709 TCAGTCCTGTGAACCTATGTTTCA 59.653 41.667 0.00 0.00 33.97 2.69
3050 7985 4.894784 TCAGTCCTGTGAACCTATGTTTC 58.105 43.478 0.00 0.00 33.97 2.78
3051 7986 4.974645 TCAGTCCTGTGAACCTATGTTT 57.025 40.909 0.00 0.00 33.97 2.83
3052 7987 4.974645 TTCAGTCCTGTGAACCTATGTT 57.025 40.909 0.00 0.00 37.42 2.71
3095 8057 4.829064 TGTGAACCTGTGTAATTTGAGC 57.171 40.909 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.