Multiple sequence alignment - TraesCS4A01G205200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G205200 chr4A 100.000 3876 0 0 1 3876 497497234 497493359 0.000000e+00 7158.0
1 TraesCS4A01G205200 chr4A 84.861 251 29 8 319 567 613425484 613425727 1.080000e-60 244.0
2 TraesCS4A01G205200 chr4A 79.666 359 45 16 125 461 56511300 56511652 2.330000e-57 233.0
3 TraesCS4A01G205200 chr4D 94.531 3163 127 17 743 3876 84604557 84601412 0.000000e+00 4841.0
4 TraesCS4A01G205200 chr4D 90.991 333 25 2 743 1070 84606188 84605856 9.880000e-121 444.0
5 TraesCS4A01G205200 chr4D 84.156 486 47 12 1 461 84607269 84606789 9.880000e-121 444.0
6 TraesCS4A01G205200 chr4D 84.966 439 39 15 317 743 84605038 84604615 1.670000e-113 420.0
7 TraesCS4A01G205200 chr4D 77.389 429 58 24 317 740 3756046 3756440 6.520000e-53 219.0
8 TraesCS4A01G205200 chr4D 78.125 96 19 2 770 864 3756539 3756633 4.180000e-05 60.2
9 TraesCS4A01G205200 chr4B 95.437 1534 62 5 1981 3511 119853548 119852020 0.000000e+00 2438.0
10 TraesCS4A01G205200 chr4B 89.267 941 52 24 2948 3876 119851107 119850204 0.000000e+00 1133.0
11 TraesCS4A01G205200 chr4B 92.507 694 31 4 745 1430 119854228 119853548 0.000000e+00 974.0
12 TraesCS4A01G205200 chr4B 90.986 355 27 1 3510 3864 119851452 119851103 1.260000e-129 473.0
13 TraesCS4A01G205200 chr4B 85.408 466 47 10 7 461 119855180 119854725 7.590000e-127 464.0
14 TraesCS4A01G205200 chr3B 86.972 284 23 12 322 597 27381029 27381306 1.350000e-79 307.0
15 TraesCS4A01G205200 chr5D 84.333 300 37 7 171 463 393986864 393986568 6.340000e-73 285.0
16 TraesCS4A01G205200 chr5D 84.364 275 29 12 194 462 116425876 116426142 1.380000e-64 257.0
17 TraesCS4A01G205200 chr1B 81.894 359 45 18 317 665 560038165 560038513 6.340000e-73 285.0
18 TraesCS4A01G205200 chr1B 88.043 92 7 3 311 401 548618463 548618375 5.300000e-19 106.0
19 TraesCS4A01G205200 chr5B 85.441 261 27 10 238 490 275705426 275705169 1.070000e-65 261.0
20 TraesCS4A01G205200 chr1D 84.191 272 33 6 322 590 473730658 473730394 4.970000e-64 255.0
21 TraesCS4A01G205200 chr1D 84.706 255 27 9 311 556 13499651 13499400 1.080000e-60 244.0
22 TraesCS4A01G205200 chr1D 76.425 386 56 19 122 477 378734032 378734412 3.980000e-40 176.0
23 TraesCS4A01G205200 chr7D 83.162 291 31 12 326 604 155335057 155334773 2.310000e-62 250.0
24 TraesCS4A01G205200 chr7D 89.362 47 3 2 122 168 188984051 188984007 1.500000e-04 58.4
25 TraesCS4A01G205200 chr7A 79.494 356 49 17 125 461 60637272 60636922 8.370000e-57 231.0
26 TraesCS4A01G205200 chr7A 91.489 47 3 1 118 163 157218459 157218413 3.230000e-06 63.9
27 TraesCS4A01G205200 chr1A 77.966 354 56 11 126 462 449465185 449464837 6.570000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G205200 chr4A 497493359 497497234 3875 True 7158.00 7158 100.000 1 3876 1 chr4A.!!$R1 3875
1 TraesCS4A01G205200 chr4D 84601412 84607269 5857 True 1537.25 4841 88.661 1 3876 4 chr4D.!!$R1 3875
2 TraesCS4A01G205200 chr4B 119850204 119855180 4976 True 1096.40 2438 90.721 7 3876 5 chr4B.!!$R1 3869

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
81 86 0.108963 AATTTGGGTTGGTCGACCGA 59.891 50.0 28.70 25.14 40.75 4.69 F
806 2791 0.325203 ATGGGCCGGCCAAATTAGTT 60.325 50.0 44.46 17.61 37.98 2.24 F
899 2884 0.542232 ACTGGTTGAGAGTACCGGCT 60.542 55.0 0.00 0.00 44.37 5.52 F
1666 3661 0.657840 GCCATTAGTTAGCGGCACTG 59.342 55.0 1.45 0.00 44.25 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1694 3689 1.069973 TGCACGCTCAAACAATCGAAG 60.070 47.619 0.00 0.0 0.00 3.79 R
2515 4532 2.252072 TACCCACATGGCGCTTCTCC 62.252 60.000 7.64 0.0 37.83 3.71 R
2845 4862 3.693085 GTGATGAAGGATCAAGCACATGT 59.307 43.478 0.00 0.0 42.96 3.21 R
3280 5299 0.250338 AAAGAAGCGGCGAAAGACCT 60.250 50.000 12.98 0.0 33.32 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 86 0.108963 AATTTGGGTTGGTCGACCGA 59.891 50.000 28.70 25.14 40.75 4.69
123 128 6.454795 TGTTTTATTGAGCAGAACCCAAATC 58.545 36.000 0.00 0.00 0.00 2.17
217 232 2.158579 TGGGAGGGTACAACCTGTTTTC 60.159 50.000 0.00 0.00 42.10 2.29
227 249 6.530181 GGTACAACCTGTTTTCTTCTGTTTTG 59.470 38.462 0.00 0.00 34.73 2.44
231 253 8.145122 ACAACCTGTTTTCTTCTGTTTTGTTAA 58.855 29.630 0.00 0.00 0.00 2.01
235 257 8.647226 CCTGTTTTCTTCTGTTTTGTTAACTTG 58.353 33.333 7.22 0.00 0.00 3.16
532 813 8.614994 AAAATGTAGAGTGAAAACGAAAACAG 57.385 30.769 0.00 0.00 0.00 3.16
634 916 8.753133 AGAAAGACAACAAAGAAGGAAAGAAAT 58.247 29.630 0.00 0.00 0.00 2.17
708 992 5.355910 TGGAAATAAAAGCGGACAATAGACC 59.644 40.000 0.00 0.00 0.00 3.85
806 2791 0.325203 ATGGGCCGGCCAAATTAGTT 60.325 50.000 44.46 17.61 37.98 2.24
814 2799 1.478105 GGCCAAATTAGTTGAGCCCTG 59.522 52.381 11.77 0.00 42.91 4.45
874 2859 2.671276 TCGCTGCGCCCAAATTGA 60.671 55.556 18.65 0.00 0.00 2.57
876 2861 2.504681 GCTGCGCCCAAATTGACG 60.505 61.111 4.18 0.00 0.00 4.35
899 2884 0.542232 ACTGGTTGAGAGTACCGGCT 60.542 55.000 0.00 0.00 44.37 5.52
906 2891 1.138266 TGAGAGTACCGGCTTATTGGC 59.862 52.381 0.00 0.00 37.94 4.52
929 2914 1.019673 CAAATCGGATCAGCCCACAG 58.980 55.000 0.00 0.00 0.00 3.66
973 2966 2.004589 ACCCTAAATAAACCCTGGCCA 58.995 47.619 4.71 4.71 0.00 5.36
980 2973 1.742308 TAAACCCTGGCCAGAGTCTT 58.258 50.000 34.91 23.00 0.00 3.01
1336 3329 2.048503 GGCAGTTGCTCGGTACGT 60.049 61.111 3.88 0.00 46.09 3.57
1442 3435 1.372997 CGAAGTCTGGTGGACCACG 60.373 63.158 18.40 5.87 45.54 4.94
1579 3572 1.935933 GGTACGTGTTATGGCTCCTG 58.064 55.000 0.00 0.00 0.00 3.86
1588 3581 3.118629 TGTTATGGCTCCTGTCTCACATC 60.119 47.826 0.00 0.00 0.00 3.06
1596 3589 3.945921 CTCCTGTCTCACATCAATTGCAT 59.054 43.478 0.00 0.00 0.00 3.96
1634 3627 4.619394 CGGAGTATGTTCTTCAGCTGTTCT 60.619 45.833 14.67 0.00 0.00 3.01
1660 3655 1.737236 TGCTTGTGCCATTAGTTAGCG 59.263 47.619 0.00 0.00 38.71 4.26
1661 3656 1.064060 GCTTGTGCCATTAGTTAGCGG 59.936 52.381 0.00 0.00 0.00 5.52
1666 3661 0.657840 GCCATTAGTTAGCGGCACTG 59.342 55.000 1.45 0.00 44.25 3.66
1694 3689 4.567159 AGTGAAAGTTCAGAACGTCTCAAC 59.433 41.667 16.55 9.61 37.98 3.18
1708 3711 4.209288 ACGTCTCAACTTCGATTGTTTGAG 59.791 41.667 14.85 14.85 0.00 3.02
1712 3715 2.949714 ACTTCGATTGTTTGAGCGTG 57.050 45.000 0.00 0.00 0.00 5.34
1783 3786 7.297936 TCGATACCTCCATATATGTTTGTGT 57.702 36.000 11.73 3.86 0.00 3.72
1805 3808 8.238631 TGTGTTTTCTGGTTTACTGTCTTTTAC 58.761 33.333 0.00 0.00 0.00 2.01
1807 3810 8.671028 TGTTTTCTGGTTTACTGTCTTTTACTC 58.329 33.333 0.00 0.00 0.00 2.59
1817 3823 3.876914 CTGTCTTTTACTCACCTGTGCAA 59.123 43.478 0.00 0.00 0.00 4.08
1918 3933 9.383519 CCATCATGAAAGTAATAACTACACAGT 57.616 33.333 0.00 0.00 33.75 3.55
1922 3937 8.999431 CATGAAAGTAATAACTACACAGTTGGT 58.001 33.333 0.35 0.00 44.81 3.67
1949 3965 8.429641 TGTTACTGTAAGATCCTTTTCAAGAGT 58.570 33.333 0.00 0.00 37.43 3.24
1968 3984 9.521503 TCAAGAGTTTGTCTCGATATATTTGAG 57.478 33.333 8.80 8.80 46.86 3.02
1978 3994 9.088512 GTCTCGATATATTTGAGTTTGAACAGT 57.911 33.333 12.86 0.00 37.18 3.55
2174 4191 3.926616 AGACAAACCATTACCTCACTCG 58.073 45.455 0.00 0.00 0.00 4.18
2224 4241 2.476051 CTTGTACTTGGCAGCGCG 59.524 61.111 0.00 0.00 0.00 6.86
2413 4430 4.340617 AGCAAGGGAATAATGAACGGAAA 58.659 39.130 0.00 0.00 0.00 3.13
2452 4469 1.420514 CTCCCAGATGCTCATGATGGT 59.579 52.381 10.63 0.00 0.00 3.55
2515 4532 6.456447 TTCTTAGAACAACATTTACCGACG 57.544 37.500 0.00 0.00 0.00 5.12
2845 4862 3.035363 TGCTACGGTTATCTTCATGGGA 58.965 45.455 0.00 0.00 0.00 4.37
2956 4973 4.461431 TGGCTGATCTTGACTTTAGTACGA 59.539 41.667 0.00 0.00 0.00 3.43
2988 5005 0.110056 CACTGTGCGTGCTCCATTTC 60.110 55.000 0.00 0.00 36.72 2.17
3029 5046 5.761234 ACCGTTACTTGCTCTGTTCAATTTA 59.239 36.000 0.00 0.00 0.00 1.40
3032 5049 7.807907 CCGTTACTTGCTCTGTTCAATTTAAAT 59.192 33.333 0.00 0.00 0.00 1.40
3169 5188 3.085952 TCCCTTTGCGAGAATGGAATT 57.914 42.857 0.00 0.00 40.93 2.17
3176 5195 4.623932 TGCGAGAATGGAATTATAGCCT 57.376 40.909 0.00 0.00 43.97 4.58
3247 5266 2.192664 TCCTGTGCAGCGGATTTAAA 57.807 45.000 0.00 0.00 0.00 1.52
3279 5298 8.507524 AGTTAGTTCACTAATTGAATAAGCCC 57.492 34.615 2.77 0.00 46.14 5.19
3280 5299 8.107095 AGTTAGTTCACTAATTGAATAAGCCCA 58.893 33.333 2.77 0.00 46.14 5.36
3281 5300 8.398665 GTTAGTTCACTAATTGAATAAGCCCAG 58.601 37.037 2.77 0.00 46.14 4.45
3291 5310 0.107165 ATAAGCCCAGGTCTTTCGCC 60.107 55.000 0.00 0.00 0.00 5.54
3299 5318 0.250338 AGGTCTTTCGCCGCTTCTTT 60.250 50.000 0.00 0.00 0.00 2.52
3315 5334 5.064071 CGCTTCTTTAAAATCCTCTGGTCTC 59.936 44.000 0.00 0.00 0.00 3.36
3377 6849 3.378339 ACGTTCGAACTACCAGTCTTTG 58.622 45.455 24.80 8.10 0.00 2.77
3397 6869 9.296400 GTCTTTGCACTTTACTTTTGTATCAAA 57.704 29.630 0.00 0.00 34.49 2.69
3496 6969 5.088739 CAGGAAAAAGCTAGCAATGTTACG 58.911 41.667 18.83 1.11 0.00 3.18
3506 6979 7.709947 AGCTAGCAATGTTACGTACATAGTTA 58.290 34.615 18.83 0.00 46.75 2.24
3508 6981 7.433131 GCTAGCAATGTTACGTACATAGTTACA 59.567 37.037 10.63 0.00 46.75 2.41
3509 6982 9.459640 CTAGCAATGTTACGTACATAGTTACAT 57.540 33.333 0.00 0.00 46.75 2.29
3511 6984 9.459640 AGCAATGTTACGTACATAGTTACATAG 57.540 33.333 7.11 0.00 46.75 2.23
3512 6985 9.241317 GCAATGTTACGTACATAGTTACATAGT 57.759 33.333 7.11 0.00 46.75 2.12
3557 7030 6.737118 TGTTGACGTTTTAGGAAAAATACCC 58.263 36.000 0.00 0.00 36.96 3.69
3559 7032 5.383476 TGACGTTTTAGGAAAAATACCCCA 58.617 37.500 0.00 0.00 36.96 4.96
3563 7036 6.656270 ACGTTTTAGGAAAAATACCCCAGTAG 59.344 38.462 0.00 0.00 36.96 2.57
3613 7086 5.353394 TGGTATAATCACCAGTCTTGTCC 57.647 43.478 0.00 0.00 43.76 4.02
3614 7087 4.163458 TGGTATAATCACCAGTCTTGTCCC 59.837 45.833 0.00 0.00 43.76 4.46
3620 7093 2.303022 TCACCAGTCTTGTCCCATCTTC 59.697 50.000 0.00 0.00 0.00 2.87
3637 7110 2.086869 CTTCGGTGGTGAATGAAGCAT 58.913 47.619 0.00 0.00 32.35 3.79
3638 7111 1.452110 TCGGTGGTGAATGAAGCATG 58.548 50.000 0.00 0.00 0.00 4.06
3641 7114 2.161855 GGTGGTGAATGAAGCATGTGA 58.838 47.619 0.00 0.00 0.00 3.58
3643 7116 1.814394 TGGTGAATGAAGCATGTGAGC 59.186 47.619 0.00 0.00 0.00 4.26
3644 7117 1.133790 GGTGAATGAAGCATGTGAGCC 59.866 52.381 0.00 0.00 34.23 4.70
3719 7198 3.891366 CCTTGTCAAGGTTCAGTGGAAAT 59.109 43.478 21.76 0.00 43.95 2.17
3789 7271 0.389166 CTGCCTCCGACAGTTGTCTC 60.389 60.000 10.27 0.00 42.66 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.324108 GCACCGTTGGACCCCCTA 61.324 66.667 0.00 0.00 0.00 3.53
47 52 0.893727 AAATTCCGGCCTGTCACCAC 60.894 55.000 0.00 0.00 0.00 4.16
61 66 0.519961 CGGTCGACCAACCCAAATTC 59.480 55.000 32.80 2.71 35.79 2.17
84 89 2.806608 AAACAAAGGACGACGCTAGA 57.193 45.000 0.00 0.00 0.00 2.43
191 206 4.382320 TTGTACCCTCCCACGCGC 62.382 66.667 5.73 0.00 0.00 6.86
204 219 7.222000 ACAAAACAGAAGAAAACAGGTTGTA 57.778 32.000 0.00 0.00 0.00 2.41
217 232 7.744276 GCAAAAACCAAGTTAACAAAACAGAAG 59.256 33.333 8.61 0.00 0.00 2.85
231 253 9.443323 AGTACAAAAATAAAGCAAAAACCAAGT 57.557 25.926 0.00 0.00 0.00 3.16
320 345 9.657121 TTTTCAAACACTTGTTCAACATTTTTC 57.343 25.926 0.00 0.00 37.25 2.29
432 628 6.757237 ACATTGTCCAAATGCTTATTCAACA 58.243 32.000 0.00 0.00 0.00 3.33
506 787 8.973835 TGTTTTCGTTTTCACTCTACATTTTT 57.026 26.923 0.00 0.00 0.00 1.94
605 887 9.238368 TCTTTCCTTCTTTGTTGTCTTTCTTTA 57.762 29.630 0.00 0.00 0.00 1.85
683 967 6.458342 GGTCTATTGTCCGCTTTTATTTCCAG 60.458 42.308 0.00 0.00 0.00 3.86
708 992 0.238289 AACAAGCCGCGTTTCTCATG 59.762 50.000 4.92 0.00 0.00 3.07
798 2783 1.821136 GCTGCAGGGCTCAACTAATTT 59.179 47.619 17.12 0.00 0.00 1.82
806 2791 4.074526 GTCTCGCTGCAGGGCTCA 62.075 66.667 25.01 8.14 0.00 4.26
874 2859 1.037493 TACTCTCAACCAGTGTGCGT 58.963 50.000 0.00 0.00 31.17 5.24
876 2861 1.797025 GGTACTCTCAACCAGTGTGC 58.203 55.000 0.00 0.00 36.96 4.57
899 2884 3.117701 TGATCCGATTTGAGGGCCAATAA 60.118 43.478 6.18 0.00 34.23 1.40
906 2891 0.536006 GGGCTGATCCGATTTGAGGG 60.536 60.000 0.00 0.00 34.94 4.30
929 2914 6.712241 TCAACGATCAAAGAAAGTGATCTC 57.288 37.500 11.47 0.00 46.14 2.75
973 2966 3.009584 GGATGGAAAACCAGGAAGACTCT 59.990 47.826 0.00 0.00 0.00 3.24
980 2973 3.336509 TTTTGGGATGGAAAACCAGGA 57.663 42.857 0.00 0.00 35.37 3.86
986 2979 1.338579 GCCGCATTTTGGGATGGAAAA 60.339 47.619 0.00 0.00 31.21 2.29
1251 3244 1.203376 TGGACTCCAACAGGGGATACA 60.203 52.381 0.00 0.00 36.09 2.29
1422 3415 2.432628 GGTCCACCAGACTTCGCG 60.433 66.667 0.00 0.00 45.54 5.87
1565 3558 2.028112 TGTGAGACAGGAGCCATAACAC 60.028 50.000 0.00 0.00 0.00 3.32
1567 3560 3.118629 TGATGTGAGACAGGAGCCATAAC 60.119 47.826 0.00 0.00 0.00 1.89
1568 3561 3.106827 TGATGTGAGACAGGAGCCATAA 58.893 45.455 0.00 0.00 0.00 1.90
1579 3572 3.441222 TCACCATGCAATTGATGTGAGAC 59.559 43.478 10.34 0.00 0.00 3.36
1588 3581 5.738693 CGTAACTACAATCACCATGCAATTG 59.261 40.000 0.00 0.00 36.64 2.32
1596 3589 5.419788 ACATACTCCGTAACTACAATCACCA 59.580 40.000 0.00 0.00 0.00 4.17
1664 3659 2.564771 TCTGAACTTTCACTGCCACAG 58.435 47.619 0.00 0.00 37.52 3.66
1666 3661 2.286418 CGTTCTGAACTTTCACTGCCAC 60.286 50.000 17.60 0.00 32.90 5.01
1694 3689 1.069973 TGCACGCTCAAACAATCGAAG 60.070 47.619 0.00 0.00 0.00 3.79
1708 3711 3.119849 ACAAATATCTGTTTCCTGCACGC 60.120 43.478 0.00 0.00 0.00 5.34
1712 3715 8.408601 ACATGAATACAAATATCTGTTTCCTGC 58.591 33.333 0.00 0.00 0.00 4.85
1779 3782 6.827586 AAAGACAGTAAACCAGAAAACACA 57.172 33.333 0.00 0.00 0.00 3.72
1783 3786 8.671028 GTGAGTAAAAGACAGTAAACCAGAAAA 58.329 33.333 0.00 0.00 0.00 2.29
1805 3808 3.885484 CAAAGTAGTTGCACAGGTGAG 57.115 47.619 3.10 0.00 0.00 3.51
1817 3823 6.546403 TCGACAAGATCCTATAGCAAAGTAGT 59.454 38.462 0.00 0.00 0.00 2.73
1831 3837 5.703876 AGCAAAGAAATTTCGACAAGATCC 58.296 37.500 12.42 0.00 0.00 3.36
1837 3843 7.956420 TTACTAGAGCAAAGAAATTTCGACA 57.044 32.000 12.42 0.00 0.00 4.35
1918 3933 7.776030 TGAAAAGGATCTTACAGTAACAACCAA 59.224 33.333 0.00 0.00 0.00 3.67
1920 3935 7.739498 TGAAAAGGATCTTACAGTAACAACC 57.261 36.000 0.00 0.00 0.00 3.77
1922 3937 9.273016 CTCTTGAAAAGGATCTTACAGTAACAA 57.727 33.333 0.00 0.00 46.24 2.83
2010 4026 6.157211 ACACCAGACGATTAGTTTCTTACTG 58.843 40.000 0.00 0.00 37.73 2.74
2011 4027 6.342338 ACACCAGACGATTAGTTTCTTACT 57.658 37.500 0.00 0.00 41.04 2.24
2026 4043 5.839621 TCTCAAGTACAGTTAACACCAGAC 58.160 41.667 8.61 0.00 0.00 3.51
2028 4045 5.120830 GCATCTCAAGTACAGTTAACACCAG 59.879 44.000 8.61 0.00 0.00 4.00
2224 4241 4.098501 AGCCATCTGCCTTTAAAATACAGC 59.901 41.667 6.83 0.00 42.71 4.40
2413 4430 6.022315 TGGGAGGAAAATGTACATGGAAAAT 58.978 36.000 9.63 0.00 0.00 1.82
2515 4532 2.252072 TACCCACATGGCGCTTCTCC 62.252 60.000 7.64 0.00 37.83 3.71
2845 4862 3.693085 GTGATGAAGGATCAAGCACATGT 59.307 43.478 0.00 0.00 42.96 3.21
2956 4973 6.775826 CACGCACAGTGCACAAACTATTGT 62.776 45.833 25.19 9.78 45.36 2.71
2988 5005 2.034532 TGGTCAGCATGCCACCAG 59.965 61.111 27.66 9.57 37.36 4.00
3029 5046 6.942576 AGCACAACAGTGGAGATAACTAATTT 59.057 34.615 0.00 0.00 33.85 1.82
3032 5049 5.483685 AGCACAACAGTGGAGATAACTAA 57.516 39.130 0.00 0.00 33.85 2.24
3169 5188 2.769663 CCACAACCACCACTAGGCTATA 59.230 50.000 0.00 0.00 39.06 1.31
3176 5195 0.920438 ACAACCCACAACCACCACTA 59.080 50.000 0.00 0.00 0.00 2.74
3279 5298 0.951040 AAGAAGCGGCGAAAGACCTG 60.951 55.000 12.98 0.00 33.32 4.00
3280 5299 0.250338 AAAGAAGCGGCGAAAGACCT 60.250 50.000 12.98 0.00 33.32 3.85
3281 5300 1.435577 TAAAGAAGCGGCGAAAGACC 58.564 50.000 12.98 0.00 33.32 3.85
3291 5310 4.938226 AGACCAGAGGATTTTAAAGAAGCG 59.062 41.667 0.00 0.00 0.00 4.68
3344 5365 6.803807 GGTAGTTCGAACGTAAAAGTACTCAT 59.196 38.462 21.87 2.63 32.10 2.90
3610 7083 0.323629 TTCACCACCGAAGATGGGAC 59.676 55.000 0.00 0.00 0.00 4.46
3611 7084 1.065491 CATTCACCACCGAAGATGGGA 60.065 52.381 0.00 0.00 0.00 4.37
3612 7085 1.065491 TCATTCACCACCGAAGATGGG 60.065 52.381 0.00 0.00 0.00 4.00
3613 7086 2.401583 TCATTCACCACCGAAGATGG 57.598 50.000 0.00 0.00 0.00 3.51
3614 7087 2.096496 GCTTCATTCACCACCGAAGATG 59.904 50.000 0.00 0.00 37.63 2.90
3620 7093 1.135603 CACATGCTTCATTCACCACCG 60.136 52.381 0.00 0.00 0.00 4.94
3789 7271 4.212214 GGCTACTTGTGTTTCTCAGAACAG 59.788 45.833 0.00 0.00 39.97 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.