Multiple sequence alignment - TraesCS4A01G204900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G204900 chr4A 100.000 6989 0 0 1 6989 497023216 497030204 0.000000e+00 12907.0
1 TraesCS4A01G204900 chr4D 92.468 1925 110 13 7 1903 84290680 84292597 0.000000e+00 2719.0
2 TraesCS4A01G204900 chr4D 89.301 1888 144 16 2909 4751 84294063 84295937 0.000000e+00 2314.0
3 TraesCS4A01G204900 chr4D 93.997 783 40 6 4855 5635 84296149 84296926 0.000000e+00 1179.0
4 TraesCS4A01G204900 chr4D 94.348 690 22 7 2122 2798 84292636 84293321 0.000000e+00 1042.0
5 TraesCS4A01G204900 chr4D 88.633 695 37 28 5711 6388 84297142 84297811 0.000000e+00 808.0
6 TraesCS4A01G204900 chr4D 92.637 421 30 1 6387 6806 84299556 84299976 7.750000e-169 604.0
7 TraesCS4A01G204900 chr4D 93.011 186 8 3 6806 6987 84300028 84300212 4.160000e-67 267.0
8 TraesCS4A01G204900 chr4D 77.566 419 81 6 3930 4339 16303253 16303667 2.520000e-59 241.0
9 TraesCS4A01G204900 chr4D 77.327 419 82 6 3930 4339 16328492 16328906 1.170000e-57 235.0
10 TraesCS4A01G204900 chr4D 83.544 237 39 0 3942 4178 16262213 16262449 9.120000e-54 222.0
11 TraesCS4A01G204900 chr4D 82.128 235 42 0 3930 4164 16343577 16343811 1.190000e-47 202.0
12 TraesCS4A01G204900 chr4D 97.619 42 1 0 6153 6194 84297681 84297640 9.720000e-09 73.1
13 TraesCS4A01G204900 chr4B 90.842 1911 128 25 4355 6249 119344594 119346473 0.000000e+00 2516.0
14 TraesCS4A01G204900 chr4B 95.963 1090 37 4 800 1888 119338877 119339960 0.000000e+00 1762.0
15 TraesCS4A01G204900 chr4B 91.667 924 65 10 3093 4012 119341737 119342652 0.000000e+00 1269.0
16 TraesCS4A01G204900 chr4B 93.548 651 24 7 2165 2798 119340235 119340884 0.000000e+00 953.0
17 TraesCS4A01G204900 chr4B 93.716 557 32 3 6252 6806 119350384 119350939 0.000000e+00 832.0
18 TraesCS4A01G204900 chr4B 87.523 553 47 5 93 624 119337974 119338525 2.770000e-173 619.0
19 TraesCS4A01G204900 chr4B 87.645 259 28 4 1871 2128 471113298 471113553 1.470000e-76 298.0
20 TraesCS4A01G204900 chr4B 93.583 187 8 3 628 812 119338652 119338836 6.910000e-70 276.0
21 TraesCS4A01G204900 chr4B 89.767 215 20 2 2878 3092 119341495 119341707 2.480000e-69 274.0
22 TraesCS4A01G204900 chr4B 87.568 185 19 3 6806 6987 119350991 119351174 1.980000e-50 211.0
23 TraesCS4A01G204900 chr7B 89.583 240 23 2 1890 2128 414077419 414077181 3.170000e-78 303.0
24 TraesCS4A01G204900 chr1D 89.583 240 24 1 1889 2128 252282892 252283130 3.170000e-78 303.0
25 TraesCS4A01G204900 chr1D 88.889 243 23 3 1888 2128 80376943 80376703 5.300000e-76 296.0
26 TraesCS4A01G204900 chr1D 76.866 268 60 2 3973 4238 224388892 224388625 4.370000e-32 150.0
27 TraesCS4A01G204900 chr1D 83.117 154 18 6 3617 3765 483842713 483842863 4.400000e-27 134.0
28 TraesCS4A01G204900 chr3B 88.843 242 24 3 1888 2128 687448856 687448617 1.910000e-75 294.0
29 TraesCS4A01G204900 chr6D 88.477 243 26 2 1887 2128 470052320 470052079 6.860000e-75 292.0
30 TraesCS4A01G204900 chr6D 88.430 242 26 2 1889 2129 186544633 186544873 2.470000e-74 291.0
31 TraesCS4A01G204900 chr6D 86.486 259 29 5 1882 2138 22235876 22236130 5.340000e-71 279.0
32 TraesCS4A01G204900 chr6D 80.405 148 22 4 3621 3765 372784271 372784414 9.590000e-19 106.0
33 TraesCS4A01G204900 chr5D 88.430 242 26 2 1888 2128 344791068 344791308 2.470000e-74 291.0
34 TraesCS4A01G204900 chr2A 82.155 297 44 5 87 375 734868378 734868673 5.410000e-61 246.0
35 TraesCS4A01G204900 chr2A 80.682 176 29 4 3591 3765 181847607 181847778 1.580000e-26 132.0
36 TraesCS4A01G204900 chr3A 76.847 406 83 8 3942 4339 8608250 8608652 1.180000e-52 219.0
37 TraesCS4A01G204900 chr3A 80.519 154 26 3 3613 3765 686528391 686528241 1.590000e-21 115.0
38 TraesCS4A01G204900 chr5B 78.992 238 48 2 3942 4178 291488172 291488408 2.020000e-35 161.0
39 TraesCS4A01G204900 chr2D 84.302 172 19 4 87 250 601564554 601564725 2.020000e-35 161.0
40 TraesCS4A01G204900 chr2D 79.618 157 25 6 3612 3765 62046312 62046464 9.590000e-19 106.0
41 TraesCS4A01G204900 chr5A 86.260 131 16 2 2663 2792 650166224 650166095 2.630000e-29 141.0
42 TraesCS4A01G204900 chr5A 79.355 155 27 4 3613 3765 156632811 156632660 3.450000e-18 104.0
43 TraesCS4A01G204900 chr5A 77.596 183 30 10 3589 3765 520376440 520376263 4.460000e-17 100.0
44 TraesCS4A01G204900 chr6A 73.615 379 88 9 3968 4339 136932860 136933233 1.220000e-27 135.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G204900 chr4A 497023216 497030204 6988 False 12907.000000 12907 100.000000 1 6989 1 chr4A.!!$F1 6988
1 TraesCS4A01G204900 chr4D 84290680 84300212 9532 False 1276.142857 2719 92.056429 7 6987 7 chr4D.!!$F5 6980
2 TraesCS4A01G204900 chr4B 119337974 119351174 13200 False 968.000000 2516 91.575222 93 6987 9 chr4B.!!$F2 6894

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 334 0.030504 CACGTGAGCAATTTGCCACA 59.969 50.0 27.35 21.00 46.52 4.17 F
383 391 0.094730 GCCACTGTCAACGATAACGC 59.905 55.0 0.00 0.00 43.96 4.84 F
1306 1511 0.820871 AAGGAAGCGAGCTCTAGTGG 59.179 55.0 12.85 0.00 0.00 4.00 F
1473 1678 1.004595 CAGTGACATGGTCATCGCTG 58.995 55.0 9.42 9.42 44.63 5.18 F
2795 3108 0.106369 CCATGTGGCCAGATGACCAT 60.106 55.0 37.43 19.83 38.46 3.55 F
3121 4306 0.953727 TTGCACCTGATCTGCACAAC 59.046 50.0 7.56 0.00 44.32 3.32 F
3855 5043 0.396435 TCTGCTTGCCTCTTCGGAAA 59.604 50.0 0.00 0.00 33.16 3.13 F
4800 7594 0.028955 AACTATTCCCCTCCTCCCCC 60.029 60.0 0.00 0.00 0.00 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1441 1646 0.108898 GTCACTGCTCTGCACTCGAT 60.109 55.000 0.0 0.00 33.79 3.59 R
1803 2011 1.522092 CTAGAGCCGTTGGATGCCA 59.478 57.895 0.0 0.00 0.00 4.92 R
2640 2949 1.214305 TTTCTGTGGGAGGATGGGGG 61.214 60.000 0.0 0.00 0.00 5.40 R
3325 4510 1.466851 ATCATCATCGGCTGGCGAGA 61.467 55.000 29.4 24.57 0.00 4.04 R
3835 5023 0.036952 TTCCGAAGAGGCAAGCAGAG 60.037 55.000 0.0 0.00 40.77 3.35 R
4039 5227 0.743345 GAAACCATAACCTCGCCGCT 60.743 55.000 0.0 0.00 0.00 5.52 R
5667 8573 0.112412 AATCAAGTTGCTTCCGGGGT 59.888 50.000 0.0 0.00 0.00 4.95 R
6600 15316 0.606604 CTTGCTTCAAGGCAGCCAAT 59.393 50.000 15.8 0.00 43.39 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.846693 GCCTTCCTACCCATGGATGT 59.153 55.000 15.22 6.04 33.09 3.06
42 43 2.750657 GGCCCAGCCTGACATAGCT 61.751 63.158 0.00 0.00 46.69 3.32
84 86 4.785453 CCCTTGACCTGAGGCGCC 62.785 72.222 21.89 21.89 32.74 6.53
85 87 4.020617 CCTTGACCTGAGGCGCCA 62.021 66.667 31.54 7.98 0.00 5.69
110 112 2.045708 GCCAACCATGATGCGACCA 61.046 57.895 0.00 0.00 0.00 4.02
112 114 0.677731 CCAACCATGATGCGACCACT 60.678 55.000 0.00 0.00 0.00 4.00
168 170 4.082523 CATGGTGGACGCCGAGGT 62.083 66.667 0.00 0.00 0.00 3.85
175 177 3.755628 GACGCCGAGGTGTAGCCA 61.756 66.667 8.46 0.00 39.13 4.75
185 188 1.004918 GTGTAGCCAACGCAGGAGT 60.005 57.895 0.00 0.00 38.54 3.85
255 258 7.083875 AGAGAGAAAGAAGATGACTAACGAG 57.916 40.000 0.00 0.00 0.00 4.18
256 259 6.657541 AGAGAGAAAGAAGATGACTAACGAGT 59.342 38.462 0.00 0.00 39.20 4.18
258 261 5.715070 AGAAAGAAGATGACTAACGAGTGG 58.285 41.667 0.00 0.00 35.45 4.00
260 263 3.698289 AGAAGATGACTAACGAGTGGGA 58.302 45.455 0.00 0.00 35.45 4.37
317 324 0.396435 ATCCCTTTGTCACGTGAGCA 59.604 50.000 20.73 16.76 0.00 4.26
327 334 0.030504 CACGTGAGCAATTTGCCACA 59.969 50.000 27.35 21.00 46.52 4.17
334 341 4.453136 GTGAGCAATTTGCCACATCAAAAT 59.547 37.500 25.23 5.47 46.52 1.82
356 363 7.538303 AATGTGACTCAAAATTTTGGTCAAC 57.462 32.000 33.09 28.28 43.32 3.18
383 391 0.094730 GCCACTGTCAACGATAACGC 59.905 55.000 0.00 0.00 43.96 4.84
387 395 1.198408 ACTGTCAACGATAACGCTCGA 59.802 47.619 9.27 0.00 43.96 4.04
388 396 1.578023 CTGTCAACGATAACGCTCGAC 59.422 52.381 9.27 0.00 43.96 4.20
389 397 1.198408 TGTCAACGATAACGCTCGACT 59.802 47.619 9.27 0.00 43.96 4.18
420 430 5.355630 GCCATTTTGTAAAGTGGTGGTTTTT 59.644 36.000 16.89 0.00 44.80 1.94
437 447 5.126222 TGGTTTTTCTGCAAGTTGTGACATA 59.874 36.000 4.48 0.00 33.76 2.29
500 527 3.667497 TGTGGCTTTGTTGTTTGAACA 57.333 38.095 0.00 0.00 37.08 3.18
680 832 5.610398 AGTTTGTTTCCTTTTAGGGCAATG 58.390 37.500 0.00 0.00 35.59 2.82
686 838 6.317391 TGTTTCCTTTTAGGGCAATGTTTTTG 59.683 34.615 0.00 0.00 35.59 2.44
687 839 5.622346 TCCTTTTAGGGCAATGTTTTTGT 57.378 34.783 0.00 0.00 35.59 2.83
688 840 6.732896 TCCTTTTAGGGCAATGTTTTTGTA 57.267 33.333 0.00 0.00 35.59 2.41
979 1184 6.954102 TCTGCCTACATATATGTACACCATCT 59.046 38.462 19.51 0.00 41.97 2.90
1128 1333 2.902486 TCTTCTCACATCTGTTGCCTCT 59.098 45.455 0.00 0.00 0.00 3.69
1181 1386 4.556233 CATCTGTCTGTCTTCGTTGGTTA 58.444 43.478 0.00 0.00 0.00 2.85
1259 1464 3.123620 CAAGAGAGCACCGCTGCC 61.124 66.667 0.00 0.00 45.53 4.85
1306 1511 0.820871 AAGGAAGCGAGCTCTAGTGG 59.179 55.000 12.85 0.00 0.00 4.00
1420 1625 3.116531 GGCACGCTACAACGGTCC 61.117 66.667 0.00 0.00 37.37 4.46
1473 1678 1.004595 CAGTGACATGGTCATCGCTG 58.995 55.000 9.42 9.42 44.63 5.18
1782 1990 1.486211 TTAGCAGCCACTCCTACTCC 58.514 55.000 0.00 0.00 0.00 3.85
1837 2045 5.119694 GGCTCTAGCTAGCTAAAAATGTGT 58.880 41.667 24.20 0.00 42.37 3.72
1840 2048 6.019156 GCTCTAGCTAGCTAAAAATGTGTCAG 60.019 42.308 24.20 10.68 39.50 3.51
1899 2111 9.657728 AGTTTATAATGCTAACTACTACCTCCT 57.342 33.333 0.00 0.00 30.75 3.69
1903 2115 4.604784 TGCTAACTACTACCTCCTTCCT 57.395 45.455 0.00 0.00 0.00 3.36
1904 2116 4.279145 TGCTAACTACTACCTCCTTCCTG 58.721 47.826 0.00 0.00 0.00 3.86
1905 2117 3.637694 GCTAACTACTACCTCCTTCCTGG 59.362 52.174 0.00 0.00 37.10 4.45
1906 2118 3.848978 AACTACTACCTCCTTCCTGGT 57.151 47.619 0.00 0.00 40.12 4.00
1907 2119 3.848978 ACTACTACCTCCTTCCTGGTT 57.151 47.619 0.00 0.00 37.74 3.67
1911 2123 6.269974 ACTACTACCTCCTTCCTGGTTTATT 58.730 40.000 0.00 0.00 37.74 1.40
1912 2124 5.437191 ACTACCTCCTTCCTGGTTTATTG 57.563 43.478 0.00 0.00 37.74 1.90
1914 2126 2.993863 ACCTCCTTCCTGGTTTATTGGT 59.006 45.455 0.00 0.00 37.07 3.67
1917 2129 4.263949 CCTCCTTCCTGGTTTATTGGTCTT 60.264 45.833 0.00 0.00 37.07 3.01
1918 2130 4.918588 TCCTTCCTGGTTTATTGGTCTTC 58.081 43.478 0.00 0.00 37.07 2.87
1919 2131 4.601857 TCCTTCCTGGTTTATTGGTCTTCT 59.398 41.667 0.00 0.00 37.07 2.85
1922 2134 6.946009 CCTTCCTGGTTTATTGGTCTTCTTTA 59.054 38.462 0.00 0.00 0.00 1.85
1924 2136 9.681062 CTTCCTGGTTTATTGGTCTTCTTTATA 57.319 33.333 0.00 0.00 0.00 0.98
2020 2232 9.878667 TGGACTCGTATTTGAATATAGTTTTCA 57.121 29.630 4.32 0.00 0.00 2.69
2044 2256 9.531942 TCAATGATATAATTTTTGGTGACATGC 57.468 29.630 0.00 0.00 42.32 4.06
2045 2257 9.315525 CAATGATATAATTTTTGGTGACATGCA 57.684 29.630 0.00 0.00 42.32 3.96
2047 2259 8.874744 TGATATAATTTTTGGTGACATGCATG 57.125 30.769 25.09 25.09 42.32 4.06
2048 2260 8.693625 TGATATAATTTTTGGTGACATGCATGA 58.306 29.630 32.75 9.00 42.32 3.07
2049 2261 9.531942 GATATAATTTTTGGTGACATGCATGAA 57.468 29.630 32.75 17.28 42.32 2.57
2053 2265 8.795842 AATTTTTGGTGACATGCATGAATATT 57.204 26.923 32.75 17.13 42.32 1.28
2054 2266 8.795842 ATTTTTGGTGACATGCATGAATATTT 57.204 26.923 32.75 9.47 42.32 1.40
2055 2267 8.618702 TTTTTGGTGACATGCATGAATATTTT 57.381 26.923 32.75 8.66 42.32 1.82
2056 2268 7.598189 TTTGGTGACATGCATGAATATTTTG 57.402 32.000 32.75 5.04 42.32 2.44
2057 2269 6.283544 TGGTGACATGCATGAATATTTTGT 57.716 33.333 32.75 8.74 33.40 2.83
2058 2270 6.699366 TGGTGACATGCATGAATATTTTGTT 58.301 32.000 32.75 6.24 33.40 2.83
2059 2271 7.834803 TGGTGACATGCATGAATATTTTGTTA 58.165 30.769 32.75 2.51 33.40 2.41
2060 2272 7.975058 TGGTGACATGCATGAATATTTTGTTAG 59.025 33.333 32.75 1.29 33.40 2.34
2061 2273 7.975616 GGTGACATGCATGAATATTTTGTTAGT 59.024 33.333 32.75 4.97 0.00 2.24
2062 2274 9.357652 GTGACATGCATGAATATTTTGTTAGTT 57.642 29.630 32.75 4.26 0.00 2.24
2099 2311 9.664332 TTAAAATTTGACATGGAATACAATGGG 57.336 29.630 0.00 0.00 0.00 4.00
2100 2312 5.874897 ATTTGACATGGAATACAATGGGG 57.125 39.130 0.00 0.00 0.00 4.96
2101 2313 4.599720 TTGACATGGAATACAATGGGGA 57.400 40.909 0.00 0.00 0.00 4.81
2102 2314 3.897239 TGACATGGAATACAATGGGGAC 58.103 45.455 0.00 0.00 0.00 4.46
2118 2330 3.842732 GGGACCAATTTAAACAGGACG 57.157 47.619 13.20 0.00 0.00 4.79
2119 2331 2.490509 GGGACCAATTTAAACAGGACGG 59.509 50.000 13.20 1.08 0.00 4.79
2120 2332 3.414269 GGACCAATTTAAACAGGACGGA 58.586 45.455 13.20 0.00 0.00 4.69
2121 2333 3.439129 GGACCAATTTAAACAGGACGGAG 59.561 47.826 13.20 0.00 0.00 4.63
2122 2334 3.418047 ACCAATTTAAACAGGACGGAGG 58.582 45.455 13.20 0.00 0.00 4.30
2123 2335 3.181437 ACCAATTTAAACAGGACGGAGGT 60.181 43.478 13.20 0.00 0.00 3.85
2348 2645 5.330271 GCGAATAGATTCTTGTACGCATT 57.670 39.130 16.19 0.64 43.35 3.56
2379 2678 1.270550 GTGCACCAAATGGAGTCCTTG 59.729 52.381 11.33 7.44 38.94 3.61
2381 2680 1.541588 GCACCAAATGGAGTCCTTGAC 59.458 52.381 11.33 0.00 38.94 3.18
2740 3053 1.227999 CGTCCGTGGATGTGTTGCTT 61.228 55.000 0.00 0.00 0.00 3.91
2742 3055 0.396435 TCCGTGGATGTGTTGCTTCT 59.604 50.000 0.00 0.00 0.00 2.85
2793 3106 4.247781 CCATGTGGCCAGATGACC 57.752 61.111 37.43 13.00 34.35 4.02
2794 3107 1.303948 CCATGTGGCCAGATGACCA 59.696 57.895 37.43 18.42 34.35 4.02
2795 3108 0.106369 CCATGTGGCCAGATGACCAT 60.106 55.000 37.43 19.83 38.46 3.55
2813 3618 8.935614 ATGACCATATGAAATTCATGTCATCT 57.064 30.769 23.38 11.91 40.75 2.90
2816 3621 8.935614 ACCATATGAAATTCATGTCATCTCAT 57.064 30.769 17.93 0.00 37.70 2.90
2848 3653 4.851639 AGCATCTTCACCTTTGGACTAT 57.148 40.909 0.00 0.00 0.00 2.12
2856 3662 8.603898 TCTTCACCTTTGGACTATTATAGTGA 57.396 34.615 9.87 0.00 39.59 3.41
2859 3665 8.603898 TCACCTTTGGACTATTATAGTGAGAA 57.396 34.615 9.87 1.10 39.59 2.87
2883 3887 4.137116 ACATAGTTATGACCGTGCATGT 57.863 40.909 4.96 0.00 37.15 3.21
2973 4124 4.254402 ACTCCTCTTTGGTCTTAACGTC 57.746 45.455 0.00 0.00 37.07 4.34
2980 4131 2.922740 TGGTCTTAACGTCTTGGCTT 57.077 45.000 0.00 0.00 0.00 4.35
2984 4135 1.695242 TCTTAACGTCTTGGCTTCCCA 59.305 47.619 0.00 0.00 40.06 4.37
3023 4174 5.495502 ACGAAGTAATCAACAAACACGTTC 58.504 37.500 0.00 0.00 41.94 3.95
3037 4192 8.603242 ACAAACACGTTCATCTTAAATACTCT 57.397 30.769 0.00 0.00 0.00 3.24
3121 4306 0.953727 TTGCACCTGATCTGCACAAC 59.046 50.000 7.56 0.00 44.32 3.32
3141 4326 2.300723 ACGTATTCATGGGCGCCTAATA 59.699 45.455 28.56 20.23 0.00 0.98
3166 4351 7.646446 TTTGCATTCAATTCTTTGTCATCAG 57.354 32.000 0.00 0.00 34.32 2.90
3325 4510 4.217159 GAAGATACCCGCCGCGGT 62.217 66.667 29.21 19.30 46.80 5.68
3356 4541 2.301296 CGATGATGATAAGGAGGTGGCT 59.699 50.000 0.00 0.00 0.00 4.75
3540 4725 1.272769 ACTTCTTCTGCCGTGAGTACC 59.727 52.381 0.00 0.00 0.00 3.34
3568 4753 8.305046 TCTCCATTATTATTTTCCCCAACAAG 57.695 34.615 0.00 0.00 0.00 3.16
3601 4786 8.123639 TCTCAAATAGTATATCTAGGGCACAC 57.876 38.462 0.00 0.00 31.67 3.82
3602 4787 7.728532 TCTCAAATAGTATATCTAGGGCACACA 59.271 37.037 0.00 0.00 31.67 3.72
3603 4788 8.435931 TCAAATAGTATATCTAGGGCACACAT 57.564 34.615 0.00 0.00 31.67 3.21
3604 4789 8.531982 TCAAATAGTATATCTAGGGCACACATC 58.468 37.037 0.00 0.00 31.67 3.06
3701 4887 3.617263 ACGCATGAATCTCCGTCTAAAAC 59.383 43.478 0.00 0.00 0.00 2.43
3718 4904 7.685594 GTCTAAAACGAAGGACATAAAGGATG 58.314 38.462 0.00 0.00 41.79 3.51
3739 4925 8.322091 AGGATGTAGATGTGTAATATTTAGGGC 58.678 37.037 0.00 0.00 0.00 5.19
3748 4934 8.257602 TGTGTAATATTTAGGGCACATCTAGA 57.742 34.615 0.00 0.00 32.79 2.43
3807 4995 1.745264 CCTTCTGCCCCTCGATCTC 59.255 63.158 0.00 0.00 0.00 2.75
3812 5000 3.849951 GCCCCTCGATCTCGGCAA 61.850 66.667 7.18 0.00 40.29 4.52
3835 5023 3.513515 AGAGATTATGGATTCGCCTCCTC 59.486 47.826 4.95 0.00 36.20 3.71
3850 5038 0.901124 TCCTCTCTGCTTGCCTCTTC 59.099 55.000 0.00 0.00 0.00 2.87
3855 5043 0.396435 TCTGCTTGCCTCTTCGGAAA 59.604 50.000 0.00 0.00 33.16 3.13
3868 5056 6.116126 CCTCTTCGGAAAGAAATCCTAATGT 58.884 40.000 0.00 0.00 40.95 2.71
3895 5083 1.075050 TCCGGCCAGTAGATAGGTAGG 59.925 57.143 2.24 0.00 0.00 3.18
3896 5084 0.889306 CGGCCAGTAGATAGGTAGGC 59.111 60.000 2.24 0.00 41.29 3.93
3936 5124 3.181462 TGAATGACTCTCGAATGGATGGG 60.181 47.826 0.00 0.00 0.00 4.00
3939 5127 1.762957 GACTCTCGAATGGATGGGGAA 59.237 52.381 0.00 0.00 0.00 3.97
3960 5148 6.014925 GGGAAACTTCTTAGAGTCAGTCTTCT 60.015 42.308 0.00 0.00 36.64 2.85
3971 5159 3.073650 AGTCAGTCTTCTGGGCTTTGATT 59.926 43.478 0.00 0.00 41.59 2.57
3990 5178 4.709886 TGATTCTCCTCAAGTTCGTCCATA 59.290 41.667 0.00 0.00 0.00 2.74
4013 5201 3.756963 GGGACGGATTAAACAGAGCTTTT 59.243 43.478 0.00 0.00 0.00 2.27
4015 5203 5.413523 GGGACGGATTAAACAGAGCTTTTAA 59.586 40.000 4.69 4.69 33.93 1.52
4029 5217 5.045578 AGAGCTTTTAAGTAGATTCCTGCCA 60.046 40.000 0.00 0.00 0.00 4.92
4039 5227 1.492176 GATTCCTGCCATCTCCTTGGA 59.508 52.381 0.00 0.00 39.25 3.53
4043 5231 2.203126 GCCATCTCCTTGGAGCGG 60.203 66.667 11.61 14.22 39.25 5.52
4090 5278 0.179250 CGCAACGACGAGATTTGGTG 60.179 55.000 0.00 0.00 34.06 4.17
4095 5283 2.955614 ACGACGAGATTTGGTGTTAGG 58.044 47.619 0.00 0.00 0.00 2.69
4101 5289 4.935808 ACGAGATTTGGTGTTAGGTTCATC 59.064 41.667 0.00 0.00 0.00 2.92
4117 5305 4.202090 GGTTCATCAGATTGATTCAAGGGC 60.202 45.833 5.21 0.00 34.28 5.19
4124 5312 7.104043 TCAGATTGATTCAAGGGCTTAATTG 57.896 36.000 5.21 0.00 0.00 2.32
4145 5333 1.153086 ATGATTGTGGCTCCGAGGC 60.153 57.895 14.94 14.94 41.77 4.70
4164 5352 1.071699 GCACTGGTTCTTAGGGACACA 59.928 52.381 0.00 0.00 0.00 3.72
4178 5366 1.873591 GGACACATGCACGAAGACTTT 59.126 47.619 0.00 0.00 0.00 2.66
4183 5371 2.802816 ACATGCACGAAGACTTTCTGAC 59.197 45.455 0.00 0.00 0.00 3.51
4184 5372 1.865865 TGCACGAAGACTTTCTGACC 58.134 50.000 0.00 0.00 0.00 4.02
4187 5375 2.470821 CACGAAGACTTTCTGACCGTT 58.529 47.619 0.00 0.00 29.82 4.44
4191 5379 3.542704 CGAAGACTTTCTGACCGTTATCG 59.457 47.826 0.00 0.00 0.00 2.92
4243 5431 1.300233 GATAGAGGCTTGTCGGCGG 60.300 63.158 7.21 0.00 44.22 6.13
4251 5439 1.082104 CTTGTCGGCGGCTTTGTTC 60.082 57.895 14.51 0.00 0.00 3.18
4257 5445 1.007387 GGCGGCTTTGTTCCAACAG 60.007 57.895 0.00 0.00 40.50 3.16
4273 6853 0.395173 ACAGTGGTGGTTTGGTGGTC 60.395 55.000 0.00 0.00 0.00 4.02
4287 6867 6.409234 GGTTTGGTGGTCAATGGAGATAGATA 60.409 42.308 0.00 0.00 34.98 1.98
4413 7200 3.775661 AAGAAACTTGACGGTTGGTTG 57.224 42.857 0.00 0.00 0.00 3.77
4414 7201 2.993937 AGAAACTTGACGGTTGGTTGA 58.006 42.857 0.00 0.00 0.00 3.18
4421 7208 1.147557 GACGGTTGGTTGACGACGTT 61.148 55.000 0.13 0.00 34.03 3.99
4431 7218 6.355397 TGGTTGACGACGTTAAATAAAACA 57.645 33.333 6.78 0.00 0.00 2.83
4438 7226 8.945930 TGACGACGTTAAATAAAACACATTTTC 58.054 29.630 0.13 0.00 38.91 2.29
4461 7249 8.429237 TTCCATGATAAAACAAGGTACCATTT 57.571 30.769 15.94 11.69 31.61 2.32
4527 7319 5.417266 TGTTGTGATTTTGACCAGAGTTCAA 59.583 36.000 0.00 0.00 0.00 2.69
4544 7336 9.683069 CAGAGTTCAACAAATTTATAACAAGCT 57.317 29.630 0.00 0.00 0.00 3.74
4546 7338 9.677567 GAGTTCAACAAATTTATAACAAGCTCA 57.322 29.630 0.00 0.00 0.00 4.26
4644 7438 5.885912 GGTCTAAGGCAATTCATCTTAACCA 59.114 40.000 0.00 0.00 31.85 3.67
4669 7463 1.262417 TCGCTCACCTACCATGTGAA 58.738 50.000 0.00 0.00 41.85 3.18
4673 7467 2.699954 CTCACCTACCATGTGAACACC 58.300 52.381 2.46 0.00 41.85 4.16
4740 7534 7.246311 AGAATTCGTTGTGAAATTAGCATGAG 58.754 34.615 0.00 0.00 40.71 2.90
4792 7586 5.836024 TCACAACACTTAACTATTCCCCT 57.164 39.130 0.00 0.00 0.00 4.79
4795 7589 4.850386 ACAACACTTAACTATTCCCCTCCT 59.150 41.667 0.00 0.00 0.00 3.69
4796 7590 5.045797 ACAACACTTAACTATTCCCCTCCTC 60.046 44.000 0.00 0.00 0.00 3.71
4797 7591 4.038633 ACACTTAACTATTCCCCTCCTCC 58.961 47.826 0.00 0.00 0.00 4.30
4798 7592 3.391626 CACTTAACTATTCCCCTCCTCCC 59.608 52.174 0.00 0.00 0.00 4.30
4799 7593 2.809309 TAACTATTCCCCTCCTCCCC 57.191 55.000 0.00 0.00 0.00 4.81
4800 7594 0.028955 AACTATTCCCCTCCTCCCCC 60.029 60.000 0.00 0.00 0.00 5.40
4801 7595 1.536662 CTATTCCCCTCCTCCCCCG 60.537 68.421 0.00 0.00 0.00 5.73
4802 7596 3.786866 TATTCCCCTCCTCCCCCGC 62.787 68.421 0.00 0.00 0.00 6.13
4838 7632 5.784578 AAAAAGCCATTTCTAAACCTCGT 57.215 34.783 0.00 0.00 0.00 4.18
4847 7641 9.069078 GCCATTTCTAAACCTCGTTAAATAAAC 57.931 33.333 0.00 0.00 34.52 2.01
4904 7806 4.331108 TGGCATGTTAGAATTGTGCAGTA 58.669 39.130 0.00 0.00 37.53 2.74
4926 7828 7.763528 CAGTATTGTCTCTCTTTTGCTATGAGT 59.236 37.037 0.00 0.00 31.64 3.41
4947 7849 5.591099 AGTGCGATGTCTTTTCATGTTTTT 58.409 33.333 0.00 0.00 0.00 1.94
4953 7855 9.289303 GCGATGTCTTTTCATGTTTTTATGTAT 57.711 29.630 0.00 0.00 0.00 2.29
5012 7914 3.626670 GCAGCTGCAGATTATCAGAGTTT 59.373 43.478 33.36 0.00 41.59 2.66
5021 7923 6.513066 GCAGATTATCAGAGTTTGGATTCTGC 60.513 42.308 10.67 10.67 38.95 4.26
5022 7924 6.541278 CAGATTATCAGAGTTTGGATTCTGCA 59.459 38.462 0.00 0.00 38.95 4.41
5028 7930 3.073650 AGAGTTTGGATTCTGCAGAAGGT 59.926 43.478 31.14 17.96 37.48 3.50
5033 7935 4.842531 TGGATTCTGCAGAAGGTGATTA 57.157 40.909 31.14 9.08 37.48 1.75
5097 7999 2.398554 CGACCGGATGCTTGTTGGG 61.399 63.158 9.46 0.00 0.00 4.12
5124 8026 5.123936 GTCCCATGGGAGTAAGTATTGTTC 58.876 45.833 34.67 13.43 46.16 3.18
5142 8044 4.183865 TGTTCTTCATACATCCTTCTGCG 58.816 43.478 0.00 0.00 0.00 5.18
5269 8172 3.832490 TCATAGATGCCCTAATAGTGCGT 59.168 43.478 0.00 0.00 0.00 5.24
5286 8189 4.518970 AGTGCGTGATCAAAACAAATAGGT 59.481 37.500 0.00 0.00 0.00 3.08
5349 8253 8.131731 GGTGAATTTTGTATAGAAATCAGAGCC 58.868 37.037 0.00 0.00 0.00 4.70
5367 8271 3.873952 GAGCCGAAATATGAAGAGCACTT 59.126 43.478 0.00 0.00 39.24 3.16
5374 8278 0.035317 ATGAAGAGCACTTGTGCCGA 59.965 50.000 20.39 2.82 36.39 5.54
5376 8280 1.160137 GAAGAGCACTTGTGCCGAAT 58.840 50.000 20.39 3.66 36.39 3.34
5377 8281 1.537202 GAAGAGCACTTGTGCCGAATT 59.463 47.619 20.39 11.00 36.39 2.17
5504 8410 1.063174 GCTCGTCATCCAACATCAAGC 59.937 52.381 0.00 0.00 0.00 4.01
5578 8484 1.770061 TGTGAGCATGCCCATGAGATA 59.230 47.619 15.66 0.00 41.20 1.98
5650 8556 1.656095 GCAAGTGTGAAGCTAGCTACG 59.344 52.381 19.70 1.95 0.00 3.51
5661 8567 6.020520 GTGAAGCTAGCTACGAATAACTGAAC 60.021 42.308 19.70 0.00 0.00 3.18
5662 8568 4.599047 AGCTAGCTACGAATAACTGAACG 58.401 43.478 17.69 0.00 0.00 3.95
5667 8573 0.322322 ACGAATAACTGAACGCCCCA 59.678 50.000 0.00 0.00 0.00 4.96
5669 8575 1.092348 GAATAACTGAACGCCCCACC 58.908 55.000 0.00 0.00 0.00 4.61
5738 8784 3.367646 ACTCTCCCAACTCGTCATCTA 57.632 47.619 0.00 0.00 0.00 1.98
5765 8811 7.547370 AGAATAGACACACTAAACTTGATCAGC 59.453 37.037 0.00 0.00 34.56 4.26
5767 8813 3.987868 GACACACTAAACTTGATCAGCGA 59.012 43.478 0.00 0.00 0.00 4.93
5839 8895 7.444183 AGCACATGTGTATGGGTATTATTGTAC 59.556 37.037 26.01 3.75 39.97 2.90
5864 8920 6.049149 GCCTATGCTAGTTAGATGTGAACAA 58.951 40.000 0.00 0.00 33.53 2.83
5914 8970 6.936335 CACCTCTATGATGGTTGTGCATATAA 59.064 38.462 0.00 0.00 33.75 0.98
5959 9015 3.812156 ATGTTGGAATGCATGTGATGG 57.188 42.857 0.00 0.00 0.00 3.51
6036 9092 8.759481 TGCATAACCACATTTATTCTTATGGA 57.241 30.769 0.00 0.00 0.00 3.41
6103 9160 6.040504 ACATCAAGTTTTCACCTAAAGGGAAC 59.959 38.462 0.20 0.76 40.27 3.62
6170 9229 2.159787 CGAGATGCACACACTTAGTTGC 60.160 50.000 0.98 0.98 35.89 4.17
6176 9235 2.034558 GCACACACTTAGTTGCACCATT 59.965 45.455 2.99 0.00 35.62 3.16
6191 9250 3.486875 GCACCATTAAAGGATGTACGTGC 60.487 47.826 3.20 0.00 36.39 5.34
6209 9268 4.920927 ACGTGCCATTAGTTGCATTTAAAC 59.079 37.500 0.00 0.00 40.07 2.01
6241 9300 3.117550 TCCTTACATCCCCACAATCCATG 60.118 47.826 0.00 0.00 0.00 3.66
6249 9308 2.499693 CCCCACAATCCATGTAAAACCC 59.500 50.000 0.00 0.00 41.46 4.11
6250 9309 3.440127 CCCACAATCCATGTAAAACCCT 58.560 45.455 0.00 0.00 41.46 4.34
6269 13236 3.308117 CCCTTGTGCATCCTACACCTTTA 60.308 47.826 0.00 0.00 37.22 1.85
6379 13347 3.734463 TGTTGATTCAAGCGACAACCTA 58.266 40.909 0.00 0.00 40.91 3.08
6388 13356 4.570772 TCAAGCGACAACCTAATAATGCTC 59.429 41.667 0.00 0.00 0.00 4.26
6427 15142 7.373617 TGATTGGATATAGCTTAGTTGGTCA 57.626 36.000 0.00 0.00 0.00 4.02
6540 15255 0.317160 ATGCTTCACGACGAGGTCAA 59.683 50.000 0.00 0.00 32.09 3.18
6542 15257 0.039437 GCTTCACGACGAGGTCAAGA 60.039 55.000 0.00 0.00 32.09 3.02
6546 15261 0.716108 CACGACGAGGTCAAGAATGC 59.284 55.000 0.00 0.00 32.09 3.56
6550 15265 1.201429 ACGAGGTCAAGAATGCCCCT 61.201 55.000 0.00 0.00 32.33 4.79
6610 15327 6.183360 GGAAAAAGAATATGTATTGGCTGCCT 60.183 38.462 21.03 2.51 0.00 4.75
6623 15340 0.670162 GCTGCCTTGAAGCAAGTCAA 59.330 50.000 6.44 0.00 43.52 3.18
6636 15353 4.655963 AGCAAGTCAACCAAGTATGTCAT 58.344 39.130 0.00 0.00 0.00 3.06
6681 15398 9.071276 GATAAAGGATAAGATGATTTGCCTTGA 57.929 33.333 0.00 0.00 34.72 3.02
6718 15435 4.620567 CGTCAACTGATGGTCATAGGTTCA 60.621 45.833 0.00 0.00 0.00 3.18
6720 15437 4.532126 TCAACTGATGGTCATAGGTTCACT 59.468 41.667 0.00 0.00 0.00 3.41
6819 15588 6.521527 AGGAGGGTTAATCAAGAATATGCT 57.478 37.500 0.00 0.00 0.00 3.79
6877 15652 2.434185 TGGTCGAGCGATGCCAAC 60.434 61.111 10.46 0.00 0.00 3.77
6959 15734 3.710724 TGGAAATGATTCTTGCCATCCA 58.289 40.909 0.00 0.00 35.79 3.41
6962 15737 3.788333 AATGATTCTTGCCATCCAACG 57.212 42.857 0.00 0.00 0.00 4.10
6968 15743 0.394216 CTTGCCATCCAACGGATCCA 60.394 55.000 13.41 0.00 40.98 3.41
6987 15762 7.228906 CGGATCCAACTACTAGATCTTTACTGA 59.771 40.741 13.41 0.00 37.24 3.41
6988 15763 8.915036 GGATCCAACTACTAGATCTTTACTGAA 58.085 37.037 6.95 0.00 37.24 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.250467 CATCCATGGGTAGGAAGGCG 60.250 60.000 13.02 0.00 38.93 5.52
1 2 0.846693 ACATCCATGGGTAGGAAGGC 59.153 55.000 13.02 0.00 38.93 4.35
2 3 1.421646 GGACATCCATGGGTAGGAAGG 59.578 57.143 13.02 0.00 38.93 3.46
3 4 2.105477 CTGGACATCCATGGGTAGGAAG 59.895 54.545 13.02 0.00 46.46 3.46
4 5 2.126882 CTGGACATCCATGGGTAGGAA 58.873 52.381 13.02 0.00 46.46 3.36
5 6 1.695664 CCTGGACATCCATGGGTAGGA 60.696 57.143 13.02 0.00 46.46 2.94
13 14 3.065787 GCTGGGCCTGGACATCCAT 62.066 63.158 12.70 0.00 46.46 3.41
30 31 0.598680 CGTGGCTAGCTATGTCAGGC 60.599 60.000 15.72 0.00 35.54 4.85
33 34 1.134367 GTGTCGTGGCTAGCTATGTCA 59.866 52.381 18.60 16.44 0.00 3.58
35 36 1.135139 CAGTGTCGTGGCTAGCTATGT 59.865 52.381 18.60 0.00 0.00 2.29
36 37 1.845266 CAGTGTCGTGGCTAGCTATG 58.155 55.000 15.72 14.69 0.00 2.23
37 38 0.103208 GCAGTGTCGTGGCTAGCTAT 59.897 55.000 15.72 0.00 0.00 2.97
42 43 2.986979 TCGGCAGTGTCGTGGCTA 60.987 61.111 17.93 0.00 40.81 3.93
103 105 4.357947 GACGCCTCAGTGGTCGCA 62.358 66.667 5.57 0.00 38.35 5.10
168 170 1.292223 GACTCCTGCGTTGGCTACA 59.708 57.895 0.00 0.00 40.82 2.74
170 172 0.320421 GTTGACTCCTGCGTTGGCTA 60.320 55.000 0.00 0.00 40.82 3.93
175 177 2.297701 ACAAATGTTGACTCCTGCGTT 58.702 42.857 0.00 0.00 0.00 4.84
185 188 3.243234 CCGTGGCAACTAACAAATGTTGA 60.243 43.478 8.99 0.00 44.29 3.18
278 285 2.774439 ACAAAACATTGACTGACGGC 57.226 45.000 0.00 0.00 0.00 5.68
282 289 6.549364 ACAAAGGGATACAAAACATTGACTGA 59.451 34.615 0.00 0.00 39.74 3.41
327 334 8.735692 ACCAAAATTTTGAGTCACATTTTGAT 57.264 26.923 30.42 21.33 37.79 2.57
334 341 6.030548 TGTTGACCAAAATTTTGAGTCACA 57.969 33.333 32.31 29.10 42.46 3.58
383 391 3.438087 ACAAAATGGCAGAATGAGTCGAG 59.562 43.478 0.00 0.00 39.69 4.04
387 395 6.449698 CACTTTACAAAATGGCAGAATGAGT 58.550 36.000 0.00 0.00 39.69 3.41
388 396 5.865552 CCACTTTACAAAATGGCAGAATGAG 59.134 40.000 0.00 0.00 39.69 2.90
389 397 5.304101 ACCACTTTACAAAATGGCAGAATGA 59.696 36.000 2.22 0.00 38.34 2.57
420 430 5.278414 CCACAATTATGTCACAACTTGCAGA 60.278 40.000 0.00 0.00 37.82 4.26
437 447 9.034800 ACATTGAAGATAAATACCACCACAATT 57.965 29.630 0.00 0.00 0.00 2.32
500 527 9.601217 GTGTATACATTTCTCATACTCAAGGTT 57.399 33.333 9.18 0.00 0.00 3.50
652 803 7.269316 TGCCCTAAAAGGAAACAAACTAAAAG 58.731 34.615 0.00 0.00 37.67 2.27
658 810 5.364778 ACATTGCCCTAAAAGGAAACAAAC 58.635 37.500 0.00 0.00 37.67 2.93
662 814 6.317642 ACAAAAACATTGCCCTAAAAGGAAAC 59.682 34.615 0.00 0.00 37.67 2.78
1049 1254 1.846439 AGATGGTGTTATGGGTGGAGG 59.154 52.381 0.00 0.00 0.00 4.30
1128 1333 6.178324 AGAAGCAAATGAGATTGATGAGACA 58.822 36.000 0.00 0.00 31.84 3.41
1181 1386 1.973281 CATGGCGGTGGAGCAAACT 60.973 57.895 0.00 0.00 39.27 2.66
1286 1491 1.202359 CCACTAGAGCTCGCTTCCTTC 60.202 57.143 8.37 0.00 0.00 3.46
1306 1511 2.813179 CTACCGTGGAAGCATGCGC 61.813 63.158 13.01 8.60 38.99 6.09
1407 1612 0.736325 CCTTGAGGACCGTTGTAGCG 60.736 60.000 0.00 0.00 37.39 4.26
1420 1625 3.197790 CATCGCCGCCACCTTGAG 61.198 66.667 0.00 0.00 0.00 3.02
1434 1639 1.752753 CTCTGCACTCGATCGACATC 58.247 55.000 15.15 6.27 0.00 3.06
1441 1646 0.108898 GTCACTGCTCTGCACTCGAT 60.109 55.000 0.00 0.00 33.79 3.59
1648 1853 4.555709 TTGTTGCCACCGACGCCT 62.556 61.111 0.00 0.00 0.00 5.52
1672 1877 1.620822 ACATTTGGCTCACCTTGTCC 58.379 50.000 0.00 0.00 36.63 4.02
1803 2011 1.522092 CTAGAGCCGTTGGATGCCA 59.478 57.895 0.00 0.00 0.00 4.92
1837 2045 6.095860 CAGGAAATCCATATTTTGACAGCTGA 59.904 38.462 23.35 0.00 35.41 4.26
1840 2048 6.212888 ACAGGAAATCCATATTTTGACAGC 57.787 37.500 1.67 0.00 35.41 4.40
1893 2105 2.993863 ACCAATAAACCAGGAAGGAGGT 59.006 45.455 0.00 0.00 41.22 3.85
1994 2206 9.878667 TGAAAACTATATTCAAATACGAGTCCA 57.121 29.630 0.00 0.00 34.04 4.02
2018 2230 9.531942 GCATGTCACCAAAAATTATATCATTGA 57.468 29.630 0.00 0.00 0.00 2.57
2019 2231 9.315525 TGCATGTCACCAAAAATTATATCATTG 57.684 29.630 0.00 0.00 0.00 2.82
2023 2235 9.531942 TTCATGCATGTCACCAAAAATTATATC 57.468 29.630 25.43 0.00 0.00 1.63
2027 2239 9.887629 AATATTCATGCATGTCACCAAAAATTA 57.112 25.926 25.43 5.20 0.00 1.40
2029 2241 8.795842 AAATATTCATGCATGTCACCAAAAAT 57.204 26.923 25.43 16.62 0.00 1.82
2030 2242 8.504815 CAAAATATTCATGCATGTCACCAAAAA 58.495 29.630 25.43 10.76 0.00 1.94
2031 2243 7.660617 ACAAAATATTCATGCATGTCACCAAAA 59.339 29.630 25.43 11.48 0.00 2.44
2032 2244 7.160049 ACAAAATATTCATGCATGTCACCAAA 58.840 30.769 25.43 12.19 0.00 3.28
2033 2245 6.699366 ACAAAATATTCATGCATGTCACCAA 58.301 32.000 25.43 12.91 0.00 3.67
2034 2246 6.283544 ACAAAATATTCATGCATGTCACCA 57.716 33.333 25.43 3.60 0.00 4.17
2035 2247 7.975616 ACTAACAAAATATTCATGCATGTCACC 59.024 33.333 25.43 0.00 0.00 4.02
2036 2248 8.915871 ACTAACAAAATATTCATGCATGTCAC 57.084 30.769 25.43 0.00 0.00 3.67
2073 2285 9.664332 CCCATTGTATTCCATGTCAAATTTTAA 57.336 29.630 0.00 0.00 0.00 1.52
2074 2286 8.263640 CCCCATTGTATTCCATGTCAAATTTTA 58.736 33.333 0.00 0.00 0.00 1.52
2075 2287 7.037730 TCCCCATTGTATTCCATGTCAAATTTT 60.038 33.333 0.00 0.00 0.00 1.82
2076 2288 6.443206 TCCCCATTGTATTCCATGTCAAATTT 59.557 34.615 0.00 0.00 0.00 1.82
2077 2289 5.963253 TCCCCATTGTATTCCATGTCAAATT 59.037 36.000 0.00 0.00 0.00 1.82
2078 2290 5.363580 GTCCCCATTGTATTCCATGTCAAAT 59.636 40.000 0.00 0.00 0.00 2.32
2079 2291 4.709397 GTCCCCATTGTATTCCATGTCAAA 59.291 41.667 0.00 0.00 0.00 2.69
2080 2292 4.277476 GTCCCCATTGTATTCCATGTCAA 58.723 43.478 0.00 0.00 0.00 3.18
2081 2293 3.372566 GGTCCCCATTGTATTCCATGTCA 60.373 47.826 0.00 0.00 0.00 3.58
2082 2294 3.222603 GGTCCCCATTGTATTCCATGTC 58.777 50.000 0.00 0.00 0.00 3.06
2083 2295 2.584965 TGGTCCCCATTGTATTCCATGT 59.415 45.455 0.00 0.00 0.00 3.21
2084 2296 3.311167 TGGTCCCCATTGTATTCCATG 57.689 47.619 0.00 0.00 0.00 3.66
2085 2297 4.557899 ATTGGTCCCCATTGTATTCCAT 57.442 40.909 0.00 0.00 31.53 3.41
2086 2298 4.344938 AATTGGTCCCCATTGTATTCCA 57.655 40.909 0.00 0.00 31.53 3.53
2087 2299 6.800072 TTAAATTGGTCCCCATTGTATTCC 57.200 37.500 0.00 0.00 31.53 3.01
2088 2300 7.616313 TGTTTAAATTGGTCCCCATTGTATTC 58.384 34.615 0.00 0.00 31.53 1.75
2089 2301 7.310983 CCTGTTTAAATTGGTCCCCATTGTATT 60.311 37.037 0.00 0.00 31.53 1.89
2090 2302 6.156083 CCTGTTTAAATTGGTCCCCATTGTAT 59.844 38.462 0.00 0.00 31.53 2.29
2091 2303 5.482175 CCTGTTTAAATTGGTCCCCATTGTA 59.518 40.000 0.00 0.00 31.53 2.41
2092 2304 4.285775 CCTGTTTAAATTGGTCCCCATTGT 59.714 41.667 0.00 0.00 31.53 2.71
2093 2305 4.530161 TCCTGTTTAAATTGGTCCCCATTG 59.470 41.667 8.61 0.00 31.53 2.82
2094 2306 4.530553 GTCCTGTTTAAATTGGTCCCCATT 59.469 41.667 8.61 0.00 31.53 3.16
2095 2307 4.093743 GTCCTGTTTAAATTGGTCCCCAT 58.906 43.478 8.61 0.00 31.53 4.00
2096 2308 3.502356 GTCCTGTTTAAATTGGTCCCCA 58.498 45.455 8.61 0.00 0.00 4.96
2097 2309 2.490509 CGTCCTGTTTAAATTGGTCCCC 59.509 50.000 8.61 0.00 0.00 4.81
2098 2310 2.490509 CCGTCCTGTTTAAATTGGTCCC 59.509 50.000 8.61 0.00 0.00 4.46
2099 2311 3.414269 TCCGTCCTGTTTAAATTGGTCC 58.586 45.455 8.61 0.00 0.00 4.46
2100 2312 3.439129 CCTCCGTCCTGTTTAAATTGGTC 59.561 47.826 8.61 3.98 0.00 4.02
2101 2313 3.181437 ACCTCCGTCCTGTTTAAATTGGT 60.181 43.478 8.61 0.00 0.00 3.67
2102 2314 3.418047 ACCTCCGTCCTGTTTAAATTGG 58.582 45.455 0.00 0.00 0.00 3.16
2103 2315 5.243207 ACTACCTCCGTCCTGTTTAAATTG 58.757 41.667 0.00 0.00 0.00 2.32
2104 2316 5.494390 ACTACCTCCGTCCTGTTTAAATT 57.506 39.130 0.00 0.00 0.00 1.82
2105 2317 6.212187 ACTTACTACCTCCGTCCTGTTTAAAT 59.788 38.462 0.00 0.00 0.00 1.40
2106 2318 5.539955 ACTTACTACCTCCGTCCTGTTTAAA 59.460 40.000 0.00 0.00 0.00 1.52
2107 2319 5.079643 ACTTACTACCTCCGTCCTGTTTAA 58.920 41.667 0.00 0.00 0.00 1.52
2108 2320 4.666512 ACTTACTACCTCCGTCCTGTTTA 58.333 43.478 0.00 0.00 0.00 2.01
2109 2321 3.504375 ACTTACTACCTCCGTCCTGTTT 58.496 45.455 0.00 0.00 0.00 2.83
2110 2322 3.166560 ACTTACTACCTCCGTCCTGTT 57.833 47.619 0.00 0.00 0.00 3.16
2111 2323 2.895242 ACTTACTACCTCCGTCCTGT 57.105 50.000 0.00 0.00 0.00 4.00
2112 2324 3.508793 TGAAACTTACTACCTCCGTCCTG 59.491 47.826 0.00 0.00 0.00 3.86
2113 2325 3.762823 CTGAAACTTACTACCTCCGTCCT 59.237 47.826 0.00 0.00 0.00 3.85
2114 2326 3.675502 GCTGAAACTTACTACCTCCGTCC 60.676 52.174 0.00 0.00 0.00 4.79
2115 2327 3.057033 TGCTGAAACTTACTACCTCCGTC 60.057 47.826 0.00 0.00 0.00 4.79
2116 2328 2.895404 TGCTGAAACTTACTACCTCCGT 59.105 45.455 0.00 0.00 0.00 4.69
2117 2329 3.056749 AGTGCTGAAACTTACTACCTCCG 60.057 47.826 0.00 0.00 0.00 4.63
2118 2330 4.021368 TGAGTGCTGAAACTTACTACCTCC 60.021 45.833 0.00 0.00 0.00 4.30
2119 2331 5.135508 TGAGTGCTGAAACTTACTACCTC 57.864 43.478 0.00 0.00 0.00 3.85
2120 2332 4.561734 GCTGAGTGCTGAAACTTACTACCT 60.562 45.833 0.00 0.00 38.95 3.08
2121 2333 3.680458 GCTGAGTGCTGAAACTTACTACC 59.320 47.826 0.00 0.00 38.95 3.18
2122 2334 4.307432 TGCTGAGTGCTGAAACTTACTAC 58.693 43.478 0.00 0.00 43.37 2.73
2123 2335 4.600692 TGCTGAGTGCTGAAACTTACTA 57.399 40.909 0.00 0.00 43.37 1.82
2212 2509 5.601583 TGATTGCAATCATTTGTGCCTAT 57.398 34.783 33.08 0.00 40.32 2.57
2269 2566 8.000780 AGGACCTGAAAAATACTAATCAATGC 57.999 34.615 0.00 0.00 0.00 3.56
2379 2678 6.553852 TCCCTGTATTAGAAACCCTAGATGTC 59.446 42.308 0.00 0.00 0.00 3.06
2381 2680 6.996180 TCCCTGTATTAGAAACCCTAGATG 57.004 41.667 0.00 0.00 0.00 2.90
2431 2730 3.609807 GTGAGAATTAACCCACGTACGTC 59.390 47.826 19.94 3.73 0.00 4.34
2640 2949 1.214305 TTTCTGTGGGAGGATGGGGG 61.214 60.000 0.00 0.00 0.00 5.40
2740 3053 1.771854 TCCAGCCGCCCAATTATTAGA 59.228 47.619 0.00 0.00 0.00 2.10
2742 3055 1.812324 CGTCCAGCCGCCCAATTATTA 60.812 52.381 0.00 0.00 0.00 0.98
2856 3662 6.578944 TGCACGGTCATAACTATGTTATTCT 58.421 36.000 0.74 0.00 35.26 2.40
2859 3665 6.288294 ACATGCACGGTCATAACTATGTTAT 58.712 36.000 0.00 0.00 35.26 1.89
2904 3908 8.703604 TTCTCTCCTTTTAATTATCTGTCACG 57.296 34.615 0.00 0.00 0.00 4.35
2911 3915 9.556030 CCGTTTGTTTCTCTCCTTTTAATTATC 57.444 33.333 0.00 0.00 0.00 1.75
2917 3921 5.677567 ACTCCGTTTGTTTCTCTCCTTTTA 58.322 37.500 0.00 0.00 0.00 1.52
2920 4071 3.840124 ACTCCGTTTGTTTCTCTCCTT 57.160 42.857 0.00 0.00 0.00 3.36
2948 4099 2.745515 AAGACCAAAGAGGAGTACGC 57.254 50.000 0.00 0.00 41.22 4.42
2952 4103 3.896272 AGACGTTAAGACCAAAGAGGAGT 59.104 43.478 0.00 0.00 41.22 3.85
2973 4124 2.806945 TATTGGTCTGGGAAGCCAAG 57.193 50.000 0.00 0.00 44.29 3.61
2984 4135 5.422214 ACTTCGTCCAGATTTATTGGTCT 57.578 39.130 0.00 0.00 37.02 3.85
3037 4192 7.672239 ACTTGCCTGTGGTTAATTATTTTCCTA 59.328 33.333 0.00 0.00 0.00 2.94
3121 4306 1.808411 ATTAGGCGCCCATGAATACG 58.192 50.000 26.15 0.00 0.00 3.06
3141 4326 7.148474 GCTGATGACAAAGAATTGAATGCAAAT 60.148 33.333 0.00 0.00 38.94 2.32
3257 4442 2.472934 GCGTCGGGTTTTAGCACG 59.527 61.111 0.00 0.00 0.00 5.34
3325 4510 1.466851 ATCATCATCGGCTGGCGAGA 61.467 55.000 29.40 24.57 0.00 4.04
3332 4517 2.301296 CACCTCCTTATCATCATCGGCT 59.699 50.000 0.00 0.00 0.00 5.52
3540 4725 5.070001 TGGGGAAAATAATAATGGAGAGCG 58.930 41.667 0.00 0.00 0.00 5.03
3701 4887 6.422100 CACATCTACATCCTTTATGTCCTTCG 59.578 42.308 0.00 0.00 46.15 3.79
3718 4904 8.848474 ATGTGCCCTAAATATTACACATCTAC 57.152 34.615 11.86 0.00 43.27 2.59
3795 4983 3.385749 TTTGCCGAGATCGAGGGGC 62.386 63.158 3.31 10.76 45.76 5.80
3807 4995 3.364366 GCGAATCCATAATCTCTTTGCCG 60.364 47.826 0.00 0.00 0.00 5.69
3812 5000 3.906846 AGGAGGCGAATCCATAATCTCTT 59.093 43.478 8.81 0.00 42.26 2.85
3819 5007 2.242926 CAGAGAGGAGGCGAATCCATA 58.757 52.381 8.81 0.00 42.26 2.74
3835 5023 0.036952 TTCCGAAGAGGCAAGCAGAG 60.037 55.000 0.00 0.00 40.77 3.35
3850 5038 4.508124 CCGAGACATTAGGATTTCTTTCCG 59.492 45.833 0.00 0.00 40.94 4.30
3855 5043 3.070302 GGAGCCGAGACATTAGGATTTCT 59.930 47.826 0.00 0.00 0.00 2.52
3904 5092 3.686241 CGAGAGTCATTCATGCCAAGAAA 59.314 43.478 0.00 0.00 0.00 2.52
3909 5097 3.200483 CATTCGAGAGTCATTCATGCCA 58.800 45.455 0.00 0.00 0.00 4.92
3910 5098 2.547211 CCATTCGAGAGTCATTCATGCC 59.453 50.000 0.00 0.00 0.00 4.40
3914 5102 3.181462 CCCATCCATTCGAGAGTCATTCA 60.181 47.826 0.00 0.00 0.00 2.57
3918 5106 1.123077 CCCCATCCATTCGAGAGTCA 58.877 55.000 0.00 0.00 0.00 3.41
3920 5108 1.879575 TTCCCCATCCATTCGAGAGT 58.120 50.000 0.00 0.00 0.00 3.24
3921 5109 2.171448 AGTTTCCCCATCCATTCGAGAG 59.829 50.000 0.00 0.00 0.00 3.20
3922 5110 2.196595 AGTTTCCCCATCCATTCGAGA 58.803 47.619 0.00 0.00 0.00 4.04
3936 5124 6.866248 CAGAAGACTGACTCTAAGAAGTTTCC 59.134 42.308 0.00 0.00 46.03 3.13
3939 5127 5.245075 CCCAGAAGACTGACTCTAAGAAGTT 59.755 44.000 0.00 0.00 46.03 2.66
3960 5148 2.376518 ACTTGAGGAGAATCAAAGCCCA 59.623 45.455 0.00 0.00 38.66 5.36
3971 5159 3.024547 CCTATGGACGAACTTGAGGAGA 58.975 50.000 0.00 0.00 0.00 3.71
3990 5178 2.188817 AGCTCTGTTTAATCCGTCCCT 58.811 47.619 0.00 0.00 0.00 4.20
4013 5201 4.820775 AGGAGATGGCAGGAATCTACTTA 58.179 43.478 0.00 0.00 41.72 2.24
4015 5203 3.342926 AGGAGATGGCAGGAATCTACT 57.657 47.619 0.00 0.00 39.99 2.57
4029 5217 2.759973 TCGCCGCTCCAAGGAGAT 60.760 61.111 19.99 0.00 44.53 2.75
4039 5227 0.743345 GAAACCATAACCTCGCCGCT 60.743 55.000 0.00 0.00 0.00 5.52
4077 5265 4.312443 TGAACCTAACACCAAATCTCGTC 58.688 43.478 0.00 0.00 0.00 4.20
4090 5278 7.201767 CCCTTGAATCAATCTGATGAACCTAAC 60.202 40.741 0.00 0.00 37.15 2.34
4095 5283 4.643784 AGCCCTTGAATCAATCTGATGAAC 59.356 41.667 0.00 0.00 37.15 3.18
4101 5289 6.755141 CACAATTAAGCCCTTGAATCAATCTG 59.245 38.462 0.00 0.00 0.00 2.90
4117 5305 5.585390 GGAGCCACAATCATCACAATTAAG 58.415 41.667 0.00 0.00 0.00 1.85
4124 5312 1.293924 CTCGGAGCCACAATCATCAC 58.706 55.000 0.00 0.00 0.00 3.06
4145 5333 3.338249 CATGTGTCCCTAAGAACCAGTG 58.662 50.000 0.00 0.00 0.00 3.66
4164 5352 2.417719 GGTCAGAAAGTCTTCGTGCAT 58.582 47.619 0.00 0.00 36.61 3.96
4178 5366 2.163010 GACCTTGTCGATAACGGTCAGA 59.837 50.000 24.72 0.00 42.77 3.27
4183 5371 2.527100 GACAGACCTTGTCGATAACGG 58.473 52.381 8.23 8.23 46.13 4.44
4257 5445 1.068434 CATTGACCACCAAACCACCAC 59.932 52.381 0.00 0.00 38.43 4.16
4369 7156 2.018542 TCGAGGCCCTATTTTCAACG 57.981 50.000 0.00 0.00 0.00 4.10
4413 7200 8.411928 GGAAAATGTGTTTTATTTAACGTCGTC 58.588 33.333 0.00 0.00 37.65 4.20
4414 7201 7.914346 TGGAAAATGTGTTTTATTTAACGTCGT 59.086 29.630 0.00 0.00 37.65 4.34
4431 7218 8.311109 GGTACCTTGTTTTATCATGGAAAATGT 58.689 33.333 4.06 7.50 36.74 2.71
4438 7226 8.310382 TCAAAATGGTACCTTGTTTTATCATGG 58.690 33.333 14.36 5.60 38.22 3.66
4461 7249 7.545265 CGCCCTCATCAAAGAAATAAAAATCAA 59.455 33.333 0.00 0.00 0.00 2.57
4669 7463 2.034066 CCGTGAAGCCCATGGTGT 59.966 61.111 11.73 0.00 45.05 4.16
4771 7565 4.941873 GGAGGGGAATAGTTAAGTGTTGTG 59.058 45.833 0.00 0.00 0.00 3.33
4772 7566 4.850386 AGGAGGGGAATAGTTAAGTGTTGT 59.150 41.667 0.00 0.00 0.00 3.32
4821 7615 9.069078 GTTTATTTAACGAGGTTTAGAAATGGC 57.931 33.333 0.00 0.00 0.00 4.40
4874 7776 6.424509 CACAATTCTAACATGCCATGTGTTTT 59.575 34.615 11.79 0.00 44.07 2.43
4904 7806 5.353678 GCACTCATAGCAAAAGAGAGACAAT 59.646 40.000 0.00 0.00 33.69 2.71
4926 7828 7.144661 ACATAAAAACATGAAAAGACATCGCA 58.855 30.769 0.00 0.00 0.00 5.10
4975 7877 1.818060 AGCTGCATTTACGCAATCCAA 59.182 42.857 1.02 0.00 42.45 3.53
5012 7914 3.726557 AATCACCTTCTGCAGAATCCA 57.273 42.857 28.57 13.70 33.01 3.41
5021 7923 7.412853 GTCACTATTTGCATAATCACCTTCTG 58.587 38.462 0.00 0.00 0.00 3.02
5022 7924 6.258727 CGTCACTATTTGCATAATCACCTTCT 59.741 38.462 0.00 0.00 0.00 2.85
5028 7930 6.816140 TGAAGTCGTCACTATTTGCATAATCA 59.184 34.615 0.00 0.00 30.14 2.57
5033 7935 7.792374 AATATGAAGTCGTCACTATTTGCAT 57.208 32.000 0.00 0.00 39.72 3.96
5124 8026 1.869767 GGCGCAGAAGGATGTATGAAG 59.130 52.381 10.83 0.00 0.00 3.02
5142 8044 4.285292 CTCTTGCGATGTTAATTCATGGC 58.715 43.478 7.04 7.04 45.24 4.40
5228 8131 2.574369 TGATACGGGGATGGTTGTTCTT 59.426 45.455 0.00 0.00 0.00 2.52
5229 8132 2.193127 TGATACGGGGATGGTTGTTCT 58.807 47.619 0.00 0.00 0.00 3.01
5230 8133 2.702592 TGATACGGGGATGGTTGTTC 57.297 50.000 0.00 0.00 0.00 3.18
5231 8134 3.971305 TCTATGATACGGGGATGGTTGTT 59.029 43.478 0.00 0.00 0.00 2.83
5269 8172 5.999205 ATGCCACCTATTTGTTTTGATCA 57.001 34.783 0.00 0.00 0.00 2.92
5377 8281 7.106439 TCTAAAGTTGCATGTTCAGGAAAAA 57.894 32.000 0.00 0.00 0.00 1.94
5435 8341 3.668596 AACAACCTGAAAGAAACGACG 57.331 42.857 0.00 0.00 34.07 5.12
5504 8410 8.712285 TTCTTCTAAATGTACCTTTGGTATCG 57.288 34.615 6.40 0.00 40.54 2.92
5578 8484 8.299570 CCTAAAATTGATGAGTAGCAACAAACT 58.700 33.333 0.00 0.00 41.69 2.66
5642 8548 3.729716 GGCGTTCAGTTATTCGTAGCTAG 59.270 47.826 0.00 0.00 0.00 3.42
5650 8556 1.092348 GGTGGGGCGTTCAGTTATTC 58.908 55.000 0.00 0.00 0.00 1.75
5667 8573 0.112412 AATCAAGTTGCTTCCGGGGT 59.888 50.000 0.00 0.00 0.00 4.95
5669 8575 1.885887 TCAAATCAAGTTGCTTCCGGG 59.114 47.619 0.00 0.00 0.00 5.73
5738 8784 9.429359 CTGATCAAGTTTAGTGTGTCTATTCTT 57.571 33.333 0.00 0.00 0.00 2.52
5763 8809 2.509052 ATGTGCACGTATATGTCGCT 57.491 45.000 10.57 0.33 0.00 4.93
5765 8811 5.822584 ATACAATGTGCACGTATATGTCG 57.177 39.130 16.19 1.82 0.00 4.35
5839 8895 4.505313 TCACATCTAACTAGCATAGGCG 57.495 45.455 0.00 0.00 44.97 5.52
5864 8920 5.129634 TGACATTGATACACCACAACAAGT 58.870 37.500 0.00 0.00 0.00 3.16
5914 8970 9.974980 ATTAATTCTTACACAACGTTCCAAAAT 57.025 25.926 0.00 0.00 0.00 1.82
6085 9142 4.132336 ACTCGTTCCCTTTAGGTGAAAAC 58.868 43.478 0.00 0.00 36.75 2.43
6103 9160 8.443937 TCTCGATGAATATAGTGTAATGACTCG 58.556 37.037 0.00 0.00 0.00 4.18
6149 9208 2.159787 GCAACTAAGTGTGTGCATCTCG 60.160 50.000 0.00 0.00 34.86 4.04
6150 9209 2.807967 TGCAACTAAGTGTGTGCATCTC 59.192 45.455 0.00 0.00 37.58 2.75
6151 9210 2.549754 GTGCAACTAAGTGTGTGCATCT 59.450 45.455 0.00 0.00 41.18 2.90
6152 9211 2.350772 GGTGCAACTAAGTGTGTGCATC 60.351 50.000 0.00 0.00 41.18 3.91
6153 9212 1.608590 GGTGCAACTAAGTGTGTGCAT 59.391 47.619 0.00 0.00 41.18 3.96
6170 9229 3.064820 GGCACGTACATCCTTTAATGGTG 59.935 47.826 7.24 7.57 0.00 4.17
6176 9235 5.347620 ACTAATGGCACGTACATCCTTTA 57.652 39.130 5.51 5.03 0.00 1.85
6209 9268 4.901849 TGGGGATGTAAGGAGATAGACAAG 59.098 45.833 0.00 0.00 0.00 3.16
6241 9300 4.076394 TGTAGGATGCACAAGGGTTTTAC 58.924 43.478 0.00 0.00 0.00 2.01
6281 13249 5.338365 CAAGCATGCCAAAATCTAGAGAAC 58.662 41.667 15.66 0.00 0.00 3.01
6388 13356 6.862469 ATCCAATCAATATAAGGGGCATTG 57.138 37.500 0.00 0.00 0.00 2.82
6427 15142 2.840038 TGTATCTCAGGTGTCAAGCCAT 59.160 45.455 0.00 0.00 0.00 4.40
6464 15179 4.965814 TCATCCTGCCACAATATCTTCTC 58.034 43.478 0.00 0.00 0.00 2.87
6540 15255 2.492025 TCAATGACCTAGGGGCATTCT 58.508 47.619 22.24 7.06 37.29 2.40
6542 15257 2.785269 TCATCAATGACCTAGGGGCATT 59.215 45.455 20.37 20.37 38.72 3.56
6546 15261 4.923516 ATCATCATCAATGACCTAGGGG 57.076 45.455 14.81 0.00 47.00 4.79
6550 15265 7.058525 AGCAAAGAATCATCATCAATGACCTA 58.941 34.615 0.00 0.00 47.00 3.08
6600 15316 0.606604 CTTGCTTCAAGGCAGCCAAT 59.393 50.000 15.80 0.00 43.39 3.16
6610 15327 4.887071 ACATACTTGGTTGACTTGCTTCAA 59.113 37.500 0.00 0.00 32.94 2.69
6696 15413 4.631813 GTGAACCTATGACCATCAGTTGAC 59.368 45.833 3.31 2.27 0.00 3.18
6718 15435 8.847196 GTCCTAAACTATTCAAAGGAAACAAGT 58.153 33.333 0.00 0.00 38.06 3.16
6720 15437 8.990163 AGTCCTAAACTATTCAAAGGAAACAA 57.010 30.769 0.00 0.00 38.06 2.83
6761 15478 9.482627 CCAGCATAAAACATTTTTACTAACCAA 57.517 29.630 0.00 0.00 0.00 3.67
6784 15501 8.258850 TGATTAACCCTCCTACTATAAACCAG 57.741 38.462 0.00 0.00 0.00 4.00
6877 15652 7.447374 TGACCCATATGTTCACAACTAAAAG 57.553 36.000 1.24 0.00 0.00 2.27
6959 15734 6.793505 AAAGATCTAGTAGTTGGATCCGTT 57.206 37.500 7.39 0.00 42.94 4.44
6962 15737 8.466617 TCAGTAAAGATCTAGTAGTTGGATCC 57.533 38.462 4.20 4.20 42.94 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.