Multiple sequence alignment - TraesCS4A01G203600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G203600 chr4A 100.000 2399 0 0 1 2399 494145595 494143197 0.000000e+00 4431
1 TraesCS4A01G203600 chr4A 95.191 603 29 0 205 807 175114378 175113776 0.000000e+00 953
2 TraesCS4A01G203600 chr4A 96.831 568 17 1 205 771 680656344 680656911 0.000000e+00 948
3 TraesCS4A01G203600 chr5A 87.492 1543 137 18 744 2247 175891057 175892582 0.000000e+00 1729
4 TraesCS4A01G203600 chr5A 96.825 567 17 1 206 771 491990794 491990228 0.000000e+00 946
5 TraesCS4A01G203600 chr5A 96.649 567 19 0 206 772 299501676 299501110 0.000000e+00 942
6 TraesCS4A01G203600 chr5A 86.316 855 103 11 206 1055 270692664 270693509 0.000000e+00 918
7 TraesCS4A01G203600 chr6A 96.831 568 18 0 204 771 543733368 543732801 0.000000e+00 950
8 TraesCS4A01G203600 chr7A 96.986 564 17 0 206 769 392710092 392710655 0.000000e+00 948
9 TraesCS4A01G203600 chr7A 81.524 525 70 11 727 1247 74238388 74237887 7.980000e-110 407
10 TraesCS4A01G203600 chr7A 81.930 487 61 16 712 1175 239569564 239570046 1.040000e-103 387
11 TraesCS4A01G203600 chr7A 80.524 534 77 11 718 1247 442155440 442155950 3.740000e-103 385
12 TraesCS4A01G203600 chr2A 96.661 569 19 0 204 772 75352414 75352982 0.000000e+00 946
13 TraesCS4A01G203600 chr2A 88.571 140 16 0 1104 1243 663665036 663665175 1.140000e-38 171
14 TraesCS4A01G203600 chr1A 96.655 568 18 1 205 771 396032546 396033113 0.000000e+00 942
15 TraesCS4A01G203600 chr1A 90.370 135 11 1 1116 1248 294438049 294438183 2.450000e-40 176
16 TraesCS4A01G203600 chr1A 84.672 137 10 7 1181 1306 294438045 294438181 2.500000e-25 126
17 TraesCS4A01G203600 chr1A 91.765 85 7 0 1093 1177 294438097 294438181 4.190000e-23 119
18 TraesCS4A01G203600 chr3D 77.956 1184 190 41 328 1462 49500714 49499553 0.000000e+00 675
19 TraesCS4A01G203600 chr3D 95.098 204 10 0 4 207 73623884 73623681 2.970000e-84 322
20 TraesCS4A01G203600 chr3D 83.111 225 29 4 1107 1322 49499774 49499550 1.880000e-46 196
21 TraesCS4A01G203600 chr3D 86.842 152 20 0 1096 1247 604605976 604605825 1.140000e-38 171
22 TraesCS4A01G203600 chr1B 79.476 687 103 19 744 1395 415666209 415666892 1.010000e-123 453
23 TraesCS4A01G203600 chr1B 77.273 704 121 17 727 1395 499645927 499645228 6.260000e-101 377
24 TraesCS4A01G203600 chr4D 76.427 946 156 38 744 1648 504391429 504392348 1.310000e-122 449
25 TraesCS4A01G203600 chr4D 77.660 752 127 21 744 1459 504365073 504365819 1.030000e-113 420
26 TraesCS4A01G203600 chr4D 76.760 753 132 22 744 1459 504418099 504418845 4.840000e-102 381
27 TraesCS4A01G203600 chr4D 96.098 205 8 0 3 207 473292058 473292262 3.820000e-88 335
28 TraesCS4A01G203600 chr4D 95.074 203 10 0 5 207 403969353 403969555 1.070000e-83 320
29 TraesCS4A01G203600 chr4B 89.080 348 37 1 744 1090 449479759 449480106 4.740000e-117 431
30 TraesCS4A01G203600 chr4B 80.712 534 73 12 718 1247 83156669 83157176 2.890000e-104 388
31 TraesCS4A01G203600 chr4B 83.573 347 56 1 744 1090 238133768 238134113 8.270000e-85 324
32 TraesCS4A01G203600 chr4B 84.936 312 42 2 744 1055 38037975 38037669 6.440000e-81 311
33 TraesCS4A01G203600 chr4B 82.886 298 47 3 751 1048 276226020 276225727 5.090000e-67 265
34 TraesCS4A01G203600 chr4B 91.463 82 7 0 1096 1177 51857002 51856921 1.950000e-21 113
35 TraesCS4A01G203600 chr4B 79.195 149 28 3 849 994 522876712 522876564 1.520000e-17 100
36 TraesCS4A01G203600 chr3A 81.273 534 73 11 718 1247 9529769 9530279 7.980000e-110 407
37 TraesCS4A01G203600 chr3A 82.452 473 57 15 726 1175 726414461 726414930 8.040000e-105 390
38 TraesCS4A01G203600 chr3A 87.654 324 38 2 744 1065 734479907 734479584 2.250000e-100 375
39 TraesCS4A01G203600 chr3A 89.796 147 13 1 1104 1248 422901593 422901447 1.130000e-43 187
40 TraesCS4A01G203600 chr6B 78.247 616 96 22 727 1306 139400191 139399578 6.300000e-96 361
41 TraesCS4A01G203600 chr7B 86.095 338 41 3 718 1055 499134255 499134586 2.270000e-95 359
42 TraesCS4A01G203600 chr3B 78.826 562 83 19 712 1247 642237696 642238247 1.770000e-91 346
43 TraesCS4A01G203600 chr3B 84.581 227 22 8 1093 1306 109848205 109848431 1.870000e-51 213
44 TraesCS4A01G203600 chr3B 89.796 147 13 1 1104 1248 109848287 109848433 1.130000e-43 187
45 TraesCS4A01G203600 chr3B 83.417 199 22 6 1129 1316 642238058 642238256 8.820000e-40 174
46 TraesCS4A01G203600 chr2B 84.438 347 50 3 744 1090 377226672 377227014 2.950000e-89 339
47 TraesCS4A01G203600 chr2B 84.581 227 22 8 1093 1306 202159062 202159288 1.870000e-51 213
48 TraesCS4A01G203600 chr2B 89.796 147 13 1 1104 1248 202159144 202159290 1.130000e-43 187
49 TraesCS4A01G203600 chr5D 95.610 205 9 0 3 207 103464985 103464781 1.780000e-86 329
50 TraesCS4A01G203600 chr7D 95.588 204 9 0 4 207 192650284 192650081 6.390000e-86 327
51 TraesCS4A01G203600 chr7D 95.122 205 10 0 3 207 144452616 144452412 8.270000e-85 324
52 TraesCS4A01G203600 chr7D 94.712 208 8 2 3 207 604828749 604828542 1.070000e-83 320
53 TraesCS4A01G203600 chr7D 83.333 336 54 2 758 1092 551121856 551122190 2.320000e-80 309
54 TraesCS4A01G203600 chr7D 89.655 58 6 0 1106 1163 297208856 297208799 9.200000e-10 75
55 TraesCS4A01G203600 chr2D 95.122 205 10 0 3 207 54965745 54965949 8.270000e-85 324
56 TraesCS4A01G203600 chr2D 88.288 111 13 0 2107 2217 569062122 569062232 1.500000e-27 134
57 TraesCS4A01G203600 chr1D 95.122 205 10 0 3 207 236377675 236377879 8.270000e-85 324
58 TraesCS4A01G203600 chr5B 84.234 222 22 8 1098 1306 308984317 308984538 1.120000e-48 204
59 TraesCS4A01G203600 chr5B 89.796 147 13 1 1104 1248 308984394 308984540 1.130000e-43 187
60 TraesCS4A01G203600 chr5B 91.765 85 7 0 1093 1177 308984454 308984538 4.190000e-23 119
61 TraesCS4A01G203600 chr6D 84.685 111 17 0 2107 2217 313134534 313134424 7.010000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G203600 chr4A 494143197 494145595 2398 True 4431.0 4431 100.0000 1 2399 1 chr4A.!!$R2 2398
1 TraesCS4A01G203600 chr4A 175113776 175114378 602 True 953.0 953 95.1910 205 807 1 chr4A.!!$R1 602
2 TraesCS4A01G203600 chr4A 680656344 680656911 567 False 948.0 948 96.8310 205 771 1 chr4A.!!$F1 566
3 TraesCS4A01G203600 chr5A 175891057 175892582 1525 False 1729.0 1729 87.4920 744 2247 1 chr5A.!!$F1 1503
4 TraesCS4A01G203600 chr5A 491990228 491990794 566 True 946.0 946 96.8250 206 771 1 chr5A.!!$R2 565
5 TraesCS4A01G203600 chr5A 299501110 299501676 566 True 942.0 942 96.6490 206 772 1 chr5A.!!$R1 566
6 TraesCS4A01G203600 chr5A 270692664 270693509 845 False 918.0 918 86.3160 206 1055 1 chr5A.!!$F2 849
7 TraesCS4A01G203600 chr6A 543732801 543733368 567 True 950.0 950 96.8310 204 771 1 chr6A.!!$R1 567
8 TraesCS4A01G203600 chr7A 392710092 392710655 563 False 948.0 948 96.9860 206 769 1 chr7A.!!$F2 563
9 TraesCS4A01G203600 chr7A 74237887 74238388 501 True 407.0 407 81.5240 727 1247 1 chr7A.!!$R1 520
10 TraesCS4A01G203600 chr7A 442155440 442155950 510 False 385.0 385 80.5240 718 1247 1 chr7A.!!$F3 529
11 TraesCS4A01G203600 chr2A 75352414 75352982 568 False 946.0 946 96.6610 204 772 1 chr2A.!!$F1 568
12 TraesCS4A01G203600 chr1A 396032546 396033113 567 False 942.0 942 96.6550 205 771 1 chr1A.!!$F1 566
13 TraesCS4A01G203600 chr3D 49499550 49500714 1164 True 435.5 675 80.5335 328 1462 2 chr3D.!!$R3 1134
14 TraesCS4A01G203600 chr1B 415666209 415666892 683 False 453.0 453 79.4760 744 1395 1 chr1B.!!$F1 651
15 TraesCS4A01G203600 chr1B 499645228 499645927 699 True 377.0 377 77.2730 727 1395 1 chr1B.!!$R1 668
16 TraesCS4A01G203600 chr4D 504391429 504392348 919 False 449.0 449 76.4270 744 1648 1 chr4D.!!$F4 904
17 TraesCS4A01G203600 chr4D 504365073 504365819 746 False 420.0 420 77.6600 744 1459 1 chr4D.!!$F3 715
18 TraesCS4A01G203600 chr4D 504418099 504418845 746 False 381.0 381 76.7600 744 1459 1 chr4D.!!$F5 715
19 TraesCS4A01G203600 chr4B 83156669 83157176 507 False 388.0 388 80.7120 718 1247 1 chr4B.!!$F1 529
20 TraesCS4A01G203600 chr3A 9529769 9530279 510 False 407.0 407 81.2730 718 1247 1 chr3A.!!$F1 529
21 TraesCS4A01G203600 chr6B 139399578 139400191 613 True 361.0 361 78.2470 727 1306 1 chr6B.!!$R1 579
22 TraesCS4A01G203600 chr3B 642237696 642238256 560 False 260.0 346 81.1215 712 1316 2 chr3B.!!$F2 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.036577 ACTGCTGTCAGAGATGGTGC 60.037 55.0 3.32 0.0 42.95 5.01 F
134 135 0.037326 TTCTTGTAGAGCTGGTGCCG 60.037 55.0 0.00 0.0 40.80 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1342 1825 0.247736 AACGATGAGAGGCAGACCAC 59.752 55.0 0.0 0.0 39.06 4.16 R
2096 2609 0.460284 GCCGAGTGAATGATCCGTGT 60.460 55.0 0.0 0.0 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.333414 CACAGTCTGTTGGCGGTG 58.667 61.111 1.67 0.00 0.00 4.94
18 19 2.591715 ACAGTCTGTTGGCGGTGC 60.592 61.111 0.00 0.00 0.00 5.01
19 20 2.591429 CAGTCTGTTGGCGGTGCA 60.591 61.111 0.00 0.00 0.00 4.57
20 21 2.186160 CAGTCTGTTGGCGGTGCAA 61.186 57.895 0.00 0.00 0.00 4.08
21 22 2.186826 AGTCTGTTGGCGGTGCAAC 61.187 57.895 0.00 0.00 0.00 4.17
22 23 2.186826 GTCTGTTGGCGGTGCAACT 61.187 57.895 0.00 0.00 36.74 3.16
30 31 2.551270 CGGTGCAACTGCTCGTTC 59.449 61.111 0.00 0.00 42.66 3.95
31 32 2.551270 GGTGCAACTGCTCGTTCG 59.449 61.111 0.00 0.00 42.66 3.95
32 33 2.551270 GTGCAACTGCTCGTTCGG 59.449 61.111 2.95 0.00 42.66 4.30
33 34 2.108157 TGCAACTGCTCGTTCGGT 59.892 55.556 2.95 0.00 42.66 4.69
34 35 1.522806 TGCAACTGCTCGTTCGGTT 60.523 52.632 2.95 0.00 42.66 4.44
36 37 1.082756 CAACTGCTCGTTCGGTTGC 60.083 57.895 14.74 0.00 43.67 4.17
37 38 2.251642 AACTGCTCGTTCGGTTGCC 61.252 57.895 3.73 0.00 34.50 4.52
62 63 4.802051 GGGCCGGAGCAGATGCAA 62.802 66.667 5.05 0.00 45.16 4.08
63 64 3.207669 GGCCGGAGCAGATGCAAG 61.208 66.667 5.05 0.00 45.16 4.01
64 65 2.437359 GCCGGAGCAGATGCAAGT 60.437 61.111 5.05 0.00 45.16 3.16
65 66 2.758089 GCCGGAGCAGATGCAAGTG 61.758 63.158 5.05 0.00 45.16 3.16
66 67 2.758089 CCGGAGCAGATGCAAGTGC 61.758 63.158 14.28 14.28 45.16 4.40
77 78 2.962089 GCAAGTGCAAGTGTTGGTG 58.038 52.632 0.00 0.00 41.59 4.17
78 79 1.147557 GCAAGTGCAAGTGTTGGTGC 61.148 55.000 0.00 0.00 41.59 5.01
81 82 3.524014 TGCAAGTGTTGGTGCAGG 58.476 55.556 0.00 0.00 45.52 4.85
82 83 1.379710 TGCAAGTGTTGGTGCAGGT 60.380 52.632 0.00 0.00 45.52 4.00
83 84 1.066257 GCAAGTGTTGGTGCAGGTG 59.934 57.895 0.00 0.00 40.58 4.00
84 85 1.066257 CAAGTGTTGGTGCAGGTGC 59.934 57.895 0.00 0.00 42.50 5.01
85 86 2.127232 AAGTGTTGGTGCAGGTGCC 61.127 57.895 0.00 0.00 41.18 5.01
86 87 3.964875 GTGTTGGTGCAGGTGCCG 61.965 66.667 0.00 0.00 41.18 5.69
87 88 4.182433 TGTTGGTGCAGGTGCCGA 62.182 61.111 0.00 0.00 41.18 5.54
88 89 2.904866 GTTGGTGCAGGTGCCGAA 60.905 61.111 0.00 0.00 41.18 4.30
89 90 2.594303 TTGGTGCAGGTGCCGAAG 60.594 61.111 0.00 0.00 41.18 3.79
95 96 4.451150 CAGGTGCCGAAGCCGCTA 62.451 66.667 0.00 0.00 38.69 4.26
96 97 4.452733 AGGTGCCGAAGCCGCTAC 62.453 66.667 0.00 0.00 38.69 3.58
97 98 4.452733 GGTGCCGAAGCCGCTACT 62.453 66.667 0.00 0.00 38.69 2.57
98 99 3.188786 GTGCCGAAGCCGCTACTG 61.189 66.667 0.00 0.00 38.69 2.74
100 101 4.821589 GCCGAAGCCGCTACTGCT 62.822 66.667 0.00 0.00 41.89 4.24
101 102 2.887568 CCGAAGCCGCTACTGCTG 60.888 66.667 0.00 0.00 39.48 4.41
102 103 2.125912 CGAAGCCGCTACTGCTGT 60.126 61.111 0.66 0.66 39.48 4.40
103 104 2.161486 CGAAGCCGCTACTGCTGTC 61.161 63.158 0.00 0.00 39.48 3.51
104 105 1.079819 GAAGCCGCTACTGCTGTCA 60.080 57.895 0.00 0.00 39.48 3.58
105 106 1.079543 AAGCCGCTACTGCTGTCAG 60.080 57.895 0.00 0.00 45.71 3.51
106 107 1.536073 AAGCCGCTACTGCTGTCAGA 61.536 55.000 3.32 0.00 42.95 3.27
107 108 1.518133 GCCGCTACTGCTGTCAGAG 60.518 63.158 3.32 1.03 42.95 3.35
108 109 1.938657 GCCGCTACTGCTGTCAGAGA 61.939 60.000 3.32 0.00 42.95 3.10
109 110 0.743688 CCGCTACTGCTGTCAGAGAT 59.256 55.000 3.32 0.00 42.95 2.75
110 111 1.535649 CCGCTACTGCTGTCAGAGATG 60.536 57.143 3.32 0.00 42.95 2.90
111 112 1.535649 CGCTACTGCTGTCAGAGATGG 60.536 57.143 3.32 0.00 42.95 3.51
112 113 1.480137 GCTACTGCTGTCAGAGATGGT 59.520 52.381 3.32 0.00 42.95 3.55
113 114 2.738000 GCTACTGCTGTCAGAGATGGTG 60.738 54.545 3.32 0.00 42.95 4.17
114 115 0.036577 ACTGCTGTCAGAGATGGTGC 60.037 55.000 3.32 0.00 42.95 5.01
115 116 0.249676 CTGCTGTCAGAGATGGTGCT 59.750 55.000 3.32 0.00 42.95 4.40
116 117 0.689055 TGCTGTCAGAGATGGTGCTT 59.311 50.000 3.32 0.00 0.00 3.91
117 118 1.338484 TGCTGTCAGAGATGGTGCTTC 60.338 52.381 3.32 0.00 0.00 3.86
118 119 1.066286 GCTGTCAGAGATGGTGCTTCT 60.066 52.381 3.32 0.00 0.00 2.85
119 120 2.614987 GCTGTCAGAGATGGTGCTTCTT 60.615 50.000 3.32 0.00 0.00 2.52
120 121 3.001414 CTGTCAGAGATGGTGCTTCTTG 58.999 50.000 0.00 0.00 0.00 3.02
121 122 2.369860 TGTCAGAGATGGTGCTTCTTGT 59.630 45.455 0.00 0.00 0.00 3.16
122 123 3.578282 TGTCAGAGATGGTGCTTCTTGTA 59.422 43.478 0.00 0.00 0.00 2.41
123 124 4.180057 GTCAGAGATGGTGCTTCTTGTAG 58.820 47.826 0.00 0.00 0.00 2.74
124 125 4.081972 GTCAGAGATGGTGCTTCTTGTAGA 60.082 45.833 0.00 0.00 0.00 2.59
125 126 4.159321 TCAGAGATGGTGCTTCTTGTAGAG 59.841 45.833 0.00 0.00 0.00 2.43
126 127 3.118811 AGAGATGGTGCTTCTTGTAGAGC 60.119 47.826 0.00 0.00 0.00 4.09
127 128 2.836981 AGATGGTGCTTCTTGTAGAGCT 59.163 45.455 0.00 0.00 0.00 4.09
128 129 2.462456 TGGTGCTTCTTGTAGAGCTG 57.538 50.000 0.00 0.00 0.00 4.24
129 130 1.002430 TGGTGCTTCTTGTAGAGCTGG 59.998 52.381 0.00 0.00 0.00 4.85
130 131 1.002544 GGTGCTTCTTGTAGAGCTGGT 59.997 52.381 0.00 0.00 0.00 4.00
131 132 2.072298 GTGCTTCTTGTAGAGCTGGTG 58.928 52.381 0.00 0.00 0.00 4.17
132 133 1.082690 GCTTCTTGTAGAGCTGGTGC 58.917 55.000 0.00 0.00 40.05 5.01
133 134 1.731720 CTTCTTGTAGAGCTGGTGCC 58.268 55.000 0.00 0.00 40.80 5.01
134 135 0.037326 TTCTTGTAGAGCTGGTGCCG 60.037 55.000 0.00 0.00 40.80 5.69
135 136 0.898326 TCTTGTAGAGCTGGTGCCGA 60.898 55.000 0.00 0.00 40.80 5.54
136 137 0.176680 CTTGTAGAGCTGGTGCCGAT 59.823 55.000 0.00 0.00 40.80 4.18
137 138 0.108186 TTGTAGAGCTGGTGCCGATG 60.108 55.000 0.00 0.00 40.80 3.84
138 139 1.257750 TGTAGAGCTGGTGCCGATGT 61.258 55.000 0.00 0.00 40.80 3.06
139 140 0.528684 GTAGAGCTGGTGCCGATGTC 60.529 60.000 0.00 0.00 40.80 3.06
140 141 2.004808 TAGAGCTGGTGCCGATGTCG 62.005 60.000 0.00 0.00 40.80 4.35
150 151 2.887568 CGATGTCGGAGCAGGTGC 60.888 66.667 0.00 0.00 37.19 5.01
161 162 2.670635 GCAGGTGCTAGTGTCGATG 58.329 57.895 0.00 0.00 38.21 3.84
162 163 1.424493 GCAGGTGCTAGTGTCGATGC 61.424 60.000 0.00 0.00 38.21 3.91
163 164 0.807667 CAGGTGCTAGTGTCGATGCC 60.808 60.000 0.00 0.00 0.00 4.40
164 165 1.521681 GGTGCTAGTGTCGATGCCC 60.522 63.158 0.00 0.00 0.00 5.36
165 166 1.878522 GTGCTAGTGTCGATGCCCG 60.879 63.158 0.00 0.00 40.25 6.13
166 167 2.049767 TGCTAGTGTCGATGCCCGA 61.050 57.895 0.00 0.00 46.35 5.14
173 174 3.295273 TCGATGCCCGATCCTCCG 61.295 66.667 0.00 0.00 43.23 4.63
181 182 3.341263 CCGATCCTCCGGTAGATCA 57.659 57.895 25.65 0.00 44.23 2.92
182 183 1.169577 CCGATCCTCCGGTAGATCAG 58.830 60.000 25.65 19.84 44.23 2.90
183 184 0.523966 CGATCCTCCGGTAGATCAGC 59.476 60.000 25.65 9.23 39.09 4.26
184 185 0.892063 GATCCTCCGGTAGATCAGCC 59.108 60.000 23.16 0.00 39.00 4.85
185 186 0.485099 ATCCTCCGGTAGATCAGCCT 59.515 55.000 0.00 0.00 0.00 4.58
186 187 0.468214 TCCTCCGGTAGATCAGCCTG 60.468 60.000 0.00 0.00 0.00 4.85
187 188 0.468214 CCTCCGGTAGATCAGCCTGA 60.468 60.000 0.00 0.00 0.00 3.86
188 189 1.626686 CTCCGGTAGATCAGCCTGAT 58.373 55.000 6.98 6.98 40.34 2.90
198 199 2.581354 AGCCTGATCCGCTGACAC 59.419 61.111 3.71 0.00 34.56 3.67
199 200 2.887568 GCCTGATCCGCTGACACG 60.888 66.667 0.00 0.00 0.00 4.49
257 258 2.399580 GACCTGTCCTAACTGCCCTAT 58.600 52.381 0.00 0.00 0.00 2.57
424 429 4.439289 GCTAACGGTCGGTCATTAAGTAGT 60.439 45.833 0.00 0.00 0.00 2.73
494 500 5.416326 CCCGACCTTAATGTATTTGAAACCA 59.584 40.000 0.00 0.00 0.00 3.67
626 636 2.050350 CGGGCTCCAAGACGTAGGA 61.050 63.158 0.00 0.00 0.00 2.94
650 660 0.040646 TACTTCCTCCGAGAAGGGCA 59.959 55.000 12.46 0.00 46.24 5.36
715 725 5.022227 AGATCTTGCCTCTCCATACCTAT 57.978 43.478 0.00 0.00 0.00 2.57
740 750 5.424252 CCCCCTACATTACTGTCAGACTTAA 59.576 44.000 6.91 0.20 36.79 1.85
754 764 5.750067 GTCAGACTTAAAACCACGACAGTTA 59.250 40.000 0.00 0.00 0.00 2.24
786 796 1.541233 GGGGCATCACGTCTATCAAGG 60.541 57.143 0.00 0.00 0.00 3.61
830 841 1.462283 CAATATTCGGCAGCGGATCAG 59.538 52.381 3.08 0.00 0.00 2.90
894 905 3.115554 GTGCCATTCACACAAACAAGAC 58.884 45.455 0.00 0.00 44.98 3.01
998 1011 0.659427 CACATCCATGCATGACCGAC 59.341 55.000 28.31 0.00 0.00 4.79
1066 1080 8.991783 ATTTCTTACCATCTCACATGATCATT 57.008 30.769 5.16 0.00 0.00 2.57
1067 1081 7.797038 TTCTTACCATCTCACATGATCATTG 57.203 36.000 5.16 8.32 0.00 2.82
1094 1192 4.887190 ACCGCCACAAACGCCCTT 62.887 61.111 0.00 0.00 0.00 3.95
1095 1193 4.038080 CCGCCACAAACGCCCTTC 62.038 66.667 0.00 0.00 0.00 3.46
1096 1194 4.383602 CGCCACAAACGCCCTTCG 62.384 66.667 0.00 0.00 45.38 3.79
1177 1522 1.642037 CGTCTCCGGCTTCGTCTACA 61.642 60.000 0.00 0.00 0.00 2.74
1185 1530 1.494824 GCTTCGTCTACAACACCGTT 58.505 50.000 0.00 0.00 0.00 4.44
1254 1737 4.838486 CTCGTCGACGGCCAGCTC 62.838 72.222 35.05 0.00 40.29 4.09
1256 1739 4.498520 CGTCGACGGCCAGCTCAT 62.499 66.667 29.70 0.00 35.37 2.90
1257 1740 2.805546 GTCGACGGCCAGCTCATA 59.194 61.111 2.24 0.00 0.00 2.15
1258 1741 1.589196 GTCGACGGCCAGCTCATAC 60.589 63.158 2.24 0.00 0.00 2.39
1259 1742 2.049767 TCGACGGCCAGCTCATACA 61.050 57.895 2.24 0.00 0.00 2.29
1260 1743 1.153647 CGACGGCCAGCTCATACAA 60.154 57.895 2.24 0.00 0.00 2.41
1261 1744 0.739462 CGACGGCCAGCTCATACAAA 60.739 55.000 2.24 0.00 0.00 2.83
1262 1745 1.668419 GACGGCCAGCTCATACAAAT 58.332 50.000 2.24 0.00 0.00 2.32
1263 1746 1.331756 GACGGCCAGCTCATACAAATG 59.668 52.381 2.24 0.00 0.00 2.32
1264 1747 1.065491 ACGGCCAGCTCATACAAATGA 60.065 47.619 2.24 0.00 39.87 2.57
1265 1748 1.331756 CGGCCAGCTCATACAAATGAC 59.668 52.381 2.24 0.00 37.20 3.06
1266 1749 1.678101 GGCCAGCTCATACAAATGACC 59.322 52.381 0.00 0.00 37.20 4.02
1267 1750 2.648059 GCCAGCTCATACAAATGACCT 58.352 47.619 0.00 0.00 37.20 3.85
1268 1751 3.019564 GCCAGCTCATACAAATGACCTT 58.980 45.455 0.00 0.00 37.20 3.50
1269 1752 3.065925 GCCAGCTCATACAAATGACCTTC 59.934 47.826 0.00 0.00 37.20 3.46
1270 1753 3.310774 CCAGCTCATACAAATGACCTTCG 59.689 47.826 0.00 0.00 37.20 3.79
1271 1754 3.310774 CAGCTCATACAAATGACCTTCGG 59.689 47.826 0.00 0.00 37.20 4.30
1272 1755 2.032178 GCTCATACAAATGACCTTCGGC 59.968 50.000 0.00 0.00 37.20 5.54
1273 1756 2.276201 TCATACAAATGACCTTCGGCG 58.724 47.619 0.00 0.00 37.20 6.46
1274 1757 1.014352 ATACAAATGACCTTCGGCGC 58.986 50.000 0.00 0.00 0.00 6.53
1275 1758 1.355796 TACAAATGACCTTCGGCGCG 61.356 55.000 0.00 0.00 0.00 6.86
1276 1759 3.124921 AAATGACCTTCGGCGCGG 61.125 61.111 8.83 8.94 0.00 6.46
1277 1760 3.894547 AAATGACCTTCGGCGCGGT 62.895 57.895 18.30 18.30 35.90 5.68
1302 1785 4.773117 GTCGTCTCCGGCCACGTC 62.773 72.222 20.32 13.57 38.78 4.34
1304 1787 3.129502 CGTCTCCGGCCACGTCTA 61.130 66.667 14.85 0.00 38.78 2.59
1305 1788 2.488820 GTCTCCGGCCACGTCTAC 59.511 66.667 2.24 0.00 38.78 2.59
1306 1789 2.034532 TCTCCGGCCACGTCTACA 59.965 61.111 2.24 0.00 38.78 2.74
1307 1790 2.044555 TCTCCGGCCACGTCTACAG 61.045 63.158 2.24 0.00 38.78 2.74
1308 1791 3.701604 CTCCGGCCACGTCTACAGC 62.702 68.421 2.24 0.00 38.78 4.40
1311 1794 4.735132 GGCCACGTCTACAGCGCA 62.735 66.667 11.47 0.00 0.00 6.09
1312 1795 3.181967 GCCACGTCTACAGCGCAG 61.182 66.667 11.47 3.33 0.00 5.18
1313 1796 2.258591 CCACGTCTACAGCGCAGT 59.741 61.111 11.47 11.31 0.00 4.40
1314 1797 1.801913 CCACGTCTACAGCGCAGTC 60.802 63.158 9.36 0.00 0.00 3.51
1315 1798 2.146519 CACGTCTACAGCGCAGTCG 61.147 63.158 9.36 9.91 39.07 4.18
1316 1799 2.176055 CGTCTACAGCGCAGTCGT 59.824 61.111 9.36 2.58 38.14 4.34
1317 1800 1.863880 CGTCTACAGCGCAGTCGTC 60.864 63.158 9.36 0.00 38.14 4.20
1318 1801 1.514443 GTCTACAGCGCAGTCGTCC 60.514 63.158 9.36 0.00 38.14 4.79
1319 1802 1.969589 TCTACAGCGCAGTCGTCCA 60.970 57.895 9.36 0.00 38.14 4.02
1320 1803 1.515088 CTACAGCGCAGTCGTCCAG 60.515 63.158 9.36 0.00 38.14 3.86
1321 1804 3.626680 TACAGCGCAGTCGTCCAGC 62.627 63.158 9.36 0.00 38.14 4.85
1327 1810 4.742201 CAGTCGTCCAGCCCACGG 62.742 72.222 0.39 0.00 37.85 4.94
1328 1811 4.988716 AGTCGTCCAGCCCACGGA 62.989 66.667 0.39 0.00 37.85 4.69
1338 1821 4.675029 CCCACGGACACGACCACC 62.675 72.222 0.00 0.00 44.60 4.61
1339 1822 3.918977 CCACGGACACGACCACCA 61.919 66.667 0.00 0.00 44.60 4.17
1340 1823 2.355837 CACGGACACGACCACCAG 60.356 66.667 0.00 0.00 44.60 4.00
1341 1824 4.295119 ACGGACACGACCACCAGC 62.295 66.667 0.00 0.00 44.60 4.85
1343 1826 4.295119 GGACACGACCACCAGCGT 62.295 66.667 0.00 0.00 42.11 5.07
1367 1850 2.174319 GCCTCTCATCGTTTCCGGC 61.174 63.158 0.00 0.00 33.95 6.13
1368 1851 1.521681 CCTCTCATCGTTTCCGGCC 60.522 63.158 0.00 0.00 33.95 6.13
1370 1853 0.528684 CTCTCATCGTTTCCGGCCTC 60.529 60.000 0.00 0.00 33.95 4.70
1396 1879 2.103143 CGCCGTCATCGAGCTCTT 59.897 61.111 12.85 0.00 39.71 2.85
1410 1893 1.926511 GCTCTTGAACATGGCCACCG 61.927 60.000 8.16 4.64 0.00 4.94
1437 1920 2.029666 GCCCCATCGACATCTCCG 59.970 66.667 0.00 0.00 0.00 4.63
1450 1933 0.188587 ATCTCCGGCCTCATCTACCA 59.811 55.000 0.00 0.00 0.00 3.25
1470 1953 3.052082 TCGTCGTCGGACTCCCAC 61.052 66.667 6.57 0.00 41.16 4.61
1474 1957 4.129737 CGTCGGACTCCCACGCAT 62.130 66.667 2.05 0.00 33.02 4.73
1561 2044 0.803768 CATGCAGGTTCCTCGTCTCG 60.804 60.000 0.00 0.00 0.00 4.04
1610 2100 6.420903 GCACATTAAGAACCAAGAAAGGAAAC 59.579 38.462 0.00 0.00 0.00 2.78
1612 2102 8.846211 CACATTAAGAACCAAGAAAGGAAACTA 58.154 33.333 0.00 0.00 42.68 2.24
1622 2112 7.342026 ACCAAGAAAGGAAACTACTTTGATTGT 59.658 33.333 0.00 0.00 42.68 2.71
1648 2138 6.534475 AATCAATGTCAATTAGTGCATGGT 57.466 33.333 0.00 0.00 0.00 3.55
1649 2139 5.313520 TCAATGTCAATTAGTGCATGGTG 57.686 39.130 0.00 0.00 0.00 4.17
1650 2140 5.008980 TCAATGTCAATTAGTGCATGGTGA 58.991 37.500 0.00 0.00 0.00 4.02
1651 2141 5.476254 TCAATGTCAATTAGTGCATGGTGAA 59.524 36.000 0.00 0.00 0.00 3.18
1652 2142 5.571784 ATGTCAATTAGTGCATGGTGAAG 57.428 39.130 0.00 0.00 0.00 3.02
1653 2143 4.650734 TGTCAATTAGTGCATGGTGAAGA 58.349 39.130 0.00 0.00 0.00 2.87
1654 2144 4.696877 TGTCAATTAGTGCATGGTGAAGAG 59.303 41.667 0.00 0.00 0.00 2.85
1655 2145 4.937620 GTCAATTAGTGCATGGTGAAGAGA 59.062 41.667 0.00 0.00 0.00 3.10
1656 2146 5.412594 GTCAATTAGTGCATGGTGAAGAGAA 59.587 40.000 0.00 0.00 0.00 2.87
1682 2172 0.170784 TGCCATTACATGCAGCAACG 59.829 50.000 0.00 0.00 32.77 4.10
1684 2174 0.862701 CCATTACATGCAGCAACGCG 60.863 55.000 3.53 3.53 33.35 6.01
1711 2201 3.504863 CACTTGCATGCGCTTTAAGAAT 58.495 40.909 18.51 0.00 39.64 2.40
1724 2214 3.343941 TTAAGAATGGAAGGACGTGGG 57.656 47.619 0.00 0.00 0.00 4.61
1770 2260 0.464554 GGCTGCCCTAGTCAATCCAC 60.465 60.000 7.66 0.00 0.00 4.02
1781 2271 3.947868 AGTCAATCCACCACTTGATGAG 58.052 45.455 0.00 0.00 34.18 2.90
1808 2298 6.278363 TCTCTAACGTAAATTATGGCCAGAC 58.722 40.000 13.05 1.06 0.00 3.51
1829 2320 0.179108 AAGCTCGTTGATAGGCGGAC 60.179 55.000 0.00 0.00 0.00 4.79
1838 2329 1.152525 ATAGGCGGACCACTCGGAT 60.153 57.895 0.00 0.00 39.06 4.18
1842 2333 1.144057 GCGGACCACTCGGATGAAT 59.856 57.895 0.00 0.00 35.59 2.57
1844 2335 2.012051 GCGGACCACTCGGATGAATTT 61.012 52.381 0.00 0.00 35.59 1.82
1851 2342 4.949856 ACCACTCGGATGAATTTTATGCTT 59.050 37.500 0.00 0.00 35.59 3.91
1875 2366 1.154197 GGGTTGTTTACTCCGACAGC 58.846 55.000 0.00 0.00 0.00 4.40
1876 2367 1.270678 GGGTTGTTTACTCCGACAGCT 60.271 52.381 0.00 0.00 0.00 4.24
1877 2368 2.028748 GGGTTGTTTACTCCGACAGCTA 60.029 50.000 0.00 0.00 0.00 3.32
1878 2369 3.555586 GGGTTGTTTACTCCGACAGCTAA 60.556 47.826 0.00 0.00 0.00 3.09
1879 2370 3.431233 GGTTGTTTACTCCGACAGCTAAC 59.569 47.826 0.00 0.00 0.00 2.34
1881 2372 2.895404 TGTTTACTCCGACAGCTAACCT 59.105 45.455 0.00 0.00 0.00 3.50
1883 2374 0.815734 TACTCCGACAGCTAACCTGC 59.184 55.000 0.00 0.00 45.78 4.85
1926 2438 4.389576 GCGCGGTGCAAGAACTGG 62.390 66.667 8.83 0.00 45.45 4.00
1960 2472 3.733960 TCACCCGACTGCTCGACG 61.734 66.667 0.00 0.00 43.06 5.12
1961 2473 4.039357 CACCCGACTGCTCGACGT 62.039 66.667 0.00 0.00 43.06 4.34
1964 2476 4.039357 CCGACTGCTCGACGTGGT 62.039 66.667 0.00 0.00 43.06 4.16
2108 2621 2.614057 GGATCACCAACACGGATCATTC 59.386 50.000 0.00 0.00 39.30 2.67
2117 2630 1.143838 CGGATCATTCACTCGGCCA 59.856 57.895 2.24 0.00 0.00 5.36
2120 2633 0.815615 GATCATTCACTCGGCCACCC 60.816 60.000 2.24 0.00 0.00 4.61
2146 2659 2.031616 TCACTCGACTCCGTCCGT 59.968 61.111 0.00 0.00 37.05 4.69
2149 2662 4.813526 CTCGACTCCGTCCGTGCG 62.814 72.222 0.00 0.00 37.05 5.34
2166 2679 2.894387 GCCATCGCTCAGCCAGAC 60.894 66.667 0.00 0.00 0.00 3.51
2185 2698 1.446099 GCGTCTTCATCGCCACTCA 60.446 57.895 0.00 0.00 46.61 3.41
2195 2708 1.227527 CGCCACTCAGTTGGACACA 60.228 57.895 0.00 0.00 39.24 3.72
2207 2720 0.473755 TGGACACACCAGCATCACTT 59.526 50.000 0.00 0.00 44.64 3.16
2217 2730 4.738998 CATCACTTGGCCGCCCCA 62.739 66.667 7.03 0.00 43.51 4.96
2233 2746 2.230940 CCAGCATCGTTACTCCGCG 61.231 63.158 0.00 0.00 0.00 6.46
2235 2748 3.627218 GCATCGTTACTCCGCGGC 61.627 66.667 23.51 4.66 0.00 6.53
2251 2764 2.500369 GCGCGTCGTCACTTCGTA 60.500 61.111 8.43 0.00 0.00 3.43
2252 2765 2.486322 GCGCGTCGTCACTTCGTAG 61.486 63.158 8.43 0.00 0.00 3.51
2253 2766 1.862147 CGCGTCGTCACTTCGTAGG 60.862 63.158 0.00 0.00 0.00 3.18
2254 2767 1.499056 GCGTCGTCACTTCGTAGGA 59.501 57.895 0.00 0.00 0.00 2.94
2255 2768 0.098376 GCGTCGTCACTTCGTAGGAT 59.902 55.000 0.00 0.00 0.00 3.24
2256 2769 1.328680 GCGTCGTCACTTCGTAGGATA 59.671 52.381 0.00 0.00 0.00 2.59
2257 2770 2.032204 GCGTCGTCACTTCGTAGGATAT 60.032 50.000 0.00 0.00 0.00 1.63
2258 2771 3.542690 CGTCGTCACTTCGTAGGATATG 58.457 50.000 0.00 0.00 0.00 1.78
2259 2772 3.298317 GTCGTCACTTCGTAGGATATGC 58.702 50.000 0.00 0.00 0.00 3.14
2260 2773 2.292569 TCGTCACTTCGTAGGATATGCC 59.707 50.000 0.00 0.00 0.00 4.40
2275 2788 5.728471 GGATATGCCTATATCATCCGGATG 58.272 45.833 34.42 34.42 44.57 3.51
2276 2789 5.247110 GGATATGCCTATATCATCCGGATGT 59.753 44.000 36.95 27.31 44.57 3.06
2277 2790 4.679373 ATGCCTATATCATCCGGATGTC 57.321 45.455 36.95 20.47 39.72 3.06
2278 2791 2.766263 TGCCTATATCATCCGGATGTCC 59.234 50.000 36.95 20.60 39.72 4.02
2279 2792 2.103263 GCCTATATCATCCGGATGTCCC 59.897 54.545 36.95 18.85 39.72 4.46
2280 2793 3.374764 CCTATATCATCCGGATGTCCCA 58.625 50.000 36.95 22.59 39.72 4.37
2281 2794 3.969976 CCTATATCATCCGGATGTCCCAT 59.030 47.826 36.95 26.82 39.72 4.00
2282 2795 3.920231 ATATCATCCGGATGTCCCATG 57.080 47.619 36.95 17.47 39.72 3.66
2283 2796 0.037303 ATCATCCGGATGTCCCATGC 59.963 55.000 36.95 0.00 39.72 4.06
2284 2797 1.962822 CATCCGGATGTCCCATGCG 60.963 63.158 32.39 10.61 34.23 4.73
2285 2798 2.443394 ATCCGGATGTCCCATGCGT 61.443 57.895 18.33 0.00 34.14 5.24
2286 2799 2.383245 ATCCGGATGTCCCATGCGTC 62.383 60.000 18.33 0.00 34.14 5.19
2287 2800 2.961721 CGGATGTCCCATGCGTCG 60.962 66.667 9.55 0.00 34.14 5.12
2288 2801 3.272334 GGATGTCCCATGCGTCGC 61.272 66.667 11.10 11.10 34.14 5.19
2289 2802 3.272334 GATGTCCCATGCGTCGCC 61.272 66.667 15.88 0.00 0.00 5.54
2290 2803 4.094646 ATGTCCCATGCGTCGCCA 62.095 61.111 15.88 4.28 0.00 5.69
2291 2804 3.405093 ATGTCCCATGCGTCGCCAT 62.405 57.895 15.88 6.67 0.00 4.40
2292 2805 2.824041 GTCCCATGCGTCGCCATT 60.824 61.111 15.88 0.00 0.00 3.16
2293 2806 2.513666 TCCCATGCGTCGCCATTC 60.514 61.111 15.88 0.00 0.00 2.67
2294 2807 2.514592 CCCATGCGTCGCCATTCT 60.515 61.111 15.88 0.00 0.00 2.40
2295 2808 2.537560 CCCATGCGTCGCCATTCTC 61.538 63.158 15.88 0.00 0.00 2.87
2296 2809 2.537560 CCATGCGTCGCCATTCTCC 61.538 63.158 15.88 0.00 0.00 3.71
2297 2810 2.586079 ATGCGTCGCCATTCTCCG 60.586 61.111 15.88 0.00 0.00 4.63
2298 2811 4.812476 TGCGTCGCCATTCTCCGG 62.812 66.667 15.88 0.00 0.00 5.14
2299 2812 4.508128 GCGTCGCCATTCTCCGGA 62.508 66.667 5.75 2.93 0.00 5.14
2300 2813 2.183300 CGTCGCCATTCTCCGGAA 59.817 61.111 5.23 0.00 35.78 4.30
2301 2814 2.165301 CGTCGCCATTCTCCGGAAC 61.165 63.158 5.23 0.00 33.96 3.62
2315 2828 3.715854 GGAACGCGTCTATGTCACT 57.284 52.632 14.44 0.00 0.00 3.41
2316 2829 1.269166 GGAACGCGTCTATGTCACTG 58.731 55.000 14.44 0.00 0.00 3.66
2317 2830 1.269166 GAACGCGTCTATGTCACTGG 58.731 55.000 14.44 0.00 0.00 4.00
2318 2831 0.108804 AACGCGTCTATGTCACTGGG 60.109 55.000 14.44 0.00 0.00 4.45
2319 2832 0.963856 ACGCGTCTATGTCACTGGGA 60.964 55.000 5.58 0.00 0.00 4.37
2328 2841 3.625745 GTCACTGGGACATTCCGTT 57.374 52.632 4.91 0.00 46.19 4.44
2329 2842 1.892209 GTCACTGGGACATTCCGTTT 58.108 50.000 4.91 0.00 46.19 3.60
2330 2843 1.535462 GTCACTGGGACATTCCGTTTG 59.465 52.381 4.91 0.00 46.19 2.93
2331 2844 1.142060 TCACTGGGACATTCCGTTTGT 59.858 47.619 0.00 0.00 37.43 2.83
2332 2845 1.535462 CACTGGGACATTCCGTTTGTC 59.465 52.381 0.00 0.00 42.20 3.18
2333 2846 0.796312 CTGGGACATTCCGTTTGTCG 59.204 55.000 0.00 0.00 43.53 4.35
2334 2847 1.500396 GGGACATTCCGTTTGTCGC 59.500 57.895 9.70 9.70 45.69 5.19
2335 2848 1.500396 GGACATTCCGTTTGTCGCC 59.500 57.895 0.00 0.00 43.53 5.54
2336 2849 1.231958 GGACATTCCGTTTGTCGCCA 61.232 55.000 0.00 0.00 43.53 5.69
2337 2850 0.110373 GACATTCCGTTTGTCGCCAC 60.110 55.000 0.00 0.00 34.67 5.01
2338 2851 0.534203 ACATTCCGTTTGTCGCCACT 60.534 50.000 0.00 0.00 38.35 4.00
2339 2852 0.165944 CATTCCGTTTGTCGCCACTC 59.834 55.000 0.00 0.00 38.35 3.51
2340 2853 0.953960 ATTCCGTTTGTCGCCACTCC 60.954 55.000 0.00 0.00 38.35 3.85
2341 2854 2.280524 CCGTTTGTCGCCACTCCA 60.281 61.111 0.00 0.00 38.35 3.86
2342 2855 2.604174 CCGTTTGTCGCCACTCCAC 61.604 63.158 0.00 0.00 38.35 4.02
2343 2856 2.935955 GTTTGTCGCCACTCCACG 59.064 61.111 0.00 0.00 0.00 4.94
2344 2857 2.280524 TTTGTCGCCACTCCACGG 60.281 61.111 0.00 0.00 0.00 4.94
2345 2858 2.798364 TTTGTCGCCACTCCACGGA 61.798 57.895 0.00 0.00 0.00 4.69
2346 2859 2.107041 TTTGTCGCCACTCCACGGAT 62.107 55.000 0.00 0.00 0.00 4.18
2347 2860 2.202756 GTCGCCACTCCACGGATC 60.203 66.667 0.00 0.00 0.00 3.36
2348 2861 3.822192 TCGCCACTCCACGGATCG 61.822 66.667 0.00 0.00 0.00 3.69
2351 2864 4.129737 CCACTCCACGGATCGCGT 62.130 66.667 5.77 3.75 0.00 6.01
2352 2865 2.579787 CACTCCACGGATCGCGTC 60.580 66.667 5.77 2.75 0.00 5.19
2353 2866 2.750637 ACTCCACGGATCGCGTCT 60.751 61.111 5.77 0.00 0.00 4.18
2354 2867 1.450848 ACTCCACGGATCGCGTCTA 60.451 57.895 5.77 0.00 0.00 2.59
2355 2868 1.009900 CTCCACGGATCGCGTCTAC 60.010 63.158 5.77 0.00 0.00 2.59
2356 2869 1.712018 CTCCACGGATCGCGTCTACA 61.712 60.000 5.77 0.00 0.00 2.74
2357 2870 1.099295 TCCACGGATCGCGTCTACAT 61.099 55.000 5.77 0.00 0.00 2.29
2358 2871 0.660595 CCACGGATCGCGTCTACATC 60.661 60.000 5.77 0.29 0.00 3.06
2359 2872 0.028902 CACGGATCGCGTCTACATCA 59.971 55.000 5.77 0.00 0.00 3.07
2360 2873 0.029035 ACGGATCGCGTCTACATCAC 59.971 55.000 5.77 0.00 0.00 3.06
2361 2874 0.308068 CGGATCGCGTCTACATCACT 59.692 55.000 5.77 0.00 0.00 3.41
2362 2875 1.660614 CGGATCGCGTCTACATCACTC 60.661 57.143 5.77 0.00 0.00 3.51
2363 2876 1.660614 GGATCGCGTCTACATCACTCG 60.661 57.143 5.77 0.00 0.00 4.18
2364 2877 1.260825 GATCGCGTCTACATCACTCGA 59.739 52.381 5.77 0.00 0.00 4.04
2365 2878 0.372679 TCGCGTCTACATCACTCGAC 59.627 55.000 5.77 0.00 0.00 4.20
2367 2880 2.842995 CGTCTACATCACTCGACGC 58.157 57.895 0.00 0.00 41.97 5.19
2368 2881 0.096454 CGTCTACATCACTCGACGCA 59.904 55.000 0.00 0.00 41.97 5.24
2369 2882 1.536149 GTCTACATCACTCGACGCAC 58.464 55.000 0.00 0.00 0.00 5.34
2370 2883 0.450583 TCTACATCACTCGACGCACC 59.549 55.000 0.00 0.00 0.00 5.01
2371 2884 0.861866 CTACATCACTCGACGCACCG 60.862 60.000 0.00 0.00 0.00 4.94
2372 2885 2.860690 TACATCACTCGACGCACCGC 62.861 60.000 0.00 0.00 0.00 5.68
2384 2897 3.112075 CACCGCGCATCGTCACTT 61.112 61.111 8.75 0.00 36.19 3.16
2385 2898 2.809601 ACCGCGCATCGTCACTTC 60.810 61.111 8.75 0.00 36.19 3.01
2386 2899 2.809174 CCGCGCATCGTCACTTCA 60.809 61.111 8.75 0.00 36.19 3.02
2387 2900 2.391821 CGCGCATCGTCACTTCAC 59.608 61.111 8.75 0.00 0.00 3.18
2388 2901 2.371923 CGCGCATCGTCACTTCACA 61.372 57.895 8.75 0.00 0.00 3.58
2389 2902 1.417592 GCGCATCGTCACTTCACAG 59.582 57.895 0.30 0.00 0.00 3.66
2390 2903 1.417592 CGCATCGTCACTTCACAGC 59.582 57.895 0.00 0.00 0.00 4.40
2391 2904 1.284297 CGCATCGTCACTTCACAGCA 61.284 55.000 0.00 0.00 0.00 4.41
2392 2905 0.164647 GCATCGTCACTTCACAGCAC 59.835 55.000 0.00 0.00 0.00 4.40
2393 2906 0.436150 CATCGTCACTTCACAGCACG 59.564 55.000 0.00 0.00 32.93 5.34
2394 2907 1.284982 ATCGTCACTTCACAGCACGC 61.285 55.000 0.00 0.00 32.10 5.34
2395 2908 2.546321 GTCACTTCACAGCACGCG 59.454 61.111 3.53 3.53 0.00 6.01
2396 2909 2.106131 TCACTTCACAGCACGCGT 59.894 55.556 5.58 5.58 0.00 6.01
2397 2910 1.949133 TCACTTCACAGCACGCGTC 60.949 57.895 9.86 4.43 0.00 5.19
2398 2911 1.951130 CACTTCACAGCACGCGTCT 60.951 57.895 9.86 7.13 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.896801 GCACCGCCAACAGACTGTG 61.897 63.158 9.33 3.59 0.00 3.66
1 2 2.591715 GCACCGCCAACAGACTGT 60.592 61.111 1.07 1.07 0.00 3.55
2 3 2.186160 TTGCACCGCCAACAGACTG 61.186 57.895 0.00 0.00 0.00 3.51
3 4 2.186826 GTTGCACCGCCAACAGACT 61.187 57.895 0.00 0.00 43.45 3.24
4 5 2.186826 AGTTGCACCGCCAACAGAC 61.187 57.895 12.29 0.00 45.73 3.51
5 6 2.186160 CAGTTGCACCGCCAACAGA 61.186 57.895 12.29 0.00 45.73 3.41
6 7 2.332514 CAGTTGCACCGCCAACAG 59.667 61.111 12.29 3.31 45.73 3.16
7 8 3.898509 GCAGTTGCACCGCCAACA 61.899 61.111 12.29 0.00 45.73 3.33
8 9 3.542629 GAGCAGTTGCACCGCCAAC 62.543 63.158 6.90 4.33 45.16 3.77
9 10 3.286751 GAGCAGTTGCACCGCCAA 61.287 61.111 6.90 0.00 45.16 4.52
12 13 3.579626 GAACGAGCAGTTGCACCGC 62.580 63.158 15.32 0.00 44.35 5.68
13 14 2.551270 GAACGAGCAGTTGCACCG 59.449 61.111 6.90 11.32 44.35 4.94
14 15 2.551270 CGAACGAGCAGTTGCACC 59.449 61.111 6.90 0.00 44.35 5.01
15 16 1.772063 AACCGAACGAGCAGTTGCAC 61.772 55.000 6.90 0.00 44.35 4.57
16 17 1.522806 AACCGAACGAGCAGTTGCA 60.523 52.632 6.90 0.00 44.35 4.08
17 18 1.082756 CAACCGAACGAGCAGTTGC 60.083 57.895 2.23 0.00 44.35 4.17
18 19 1.082756 GCAACCGAACGAGCAGTTG 60.083 57.895 2.23 0.00 44.35 3.16
20 21 2.665185 GGCAACCGAACGAGCAGT 60.665 61.111 0.00 0.00 0.00 4.40
45 46 4.802051 TTGCATCTGCTCCGGCCC 62.802 66.667 0.00 0.00 42.66 5.80
46 47 3.207669 CTTGCATCTGCTCCGGCC 61.208 66.667 0.00 0.00 42.66 6.13
47 48 2.437359 ACTTGCATCTGCTCCGGC 60.437 61.111 0.00 0.00 42.66 6.13
48 49 2.758089 GCACTTGCATCTGCTCCGG 61.758 63.158 8.52 0.00 42.66 5.14
49 50 2.789917 GCACTTGCATCTGCTCCG 59.210 61.111 8.52 0.00 42.66 4.63
59 60 1.147557 GCACCAACACTTGCACTTGC 61.148 55.000 0.00 0.00 38.68 4.01
60 61 0.173029 TGCACCAACACTTGCACTTG 59.827 50.000 0.00 0.00 43.79 3.16
61 62 0.457035 CTGCACCAACACTTGCACTT 59.543 50.000 0.00 0.00 43.79 3.16
62 63 1.386525 CCTGCACCAACACTTGCACT 61.387 55.000 0.00 0.00 43.79 4.40
63 64 1.066257 CCTGCACCAACACTTGCAC 59.934 57.895 0.00 0.00 43.79 4.57
64 65 1.379710 ACCTGCACCAACACTTGCA 60.380 52.632 0.00 0.00 46.43 4.08
65 66 1.066257 CACCTGCACCAACACTTGC 59.934 57.895 0.00 0.00 39.33 4.01
66 67 1.066257 GCACCTGCACCAACACTTG 59.934 57.895 0.00 0.00 41.59 3.16
67 68 2.127232 GGCACCTGCACCAACACTT 61.127 57.895 0.00 0.00 44.36 3.16
68 69 2.519302 GGCACCTGCACCAACACT 60.519 61.111 0.00 0.00 44.36 3.55
69 70 3.964875 CGGCACCTGCACCAACAC 61.965 66.667 0.00 0.00 44.36 3.32
70 71 3.705934 TTCGGCACCTGCACCAACA 62.706 57.895 0.00 0.00 44.36 3.33
71 72 2.904866 TTCGGCACCTGCACCAAC 60.905 61.111 0.00 0.00 44.36 3.77
72 73 2.594303 CTTCGGCACCTGCACCAA 60.594 61.111 0.00 0.00 44.36 3.67
78 79 4.451150 TAGCGGCTTCGGCACCTG 62.451 66.667 8.26 0.00 43.96 4.00
79 80 4.452733 GTAGCGGCTTCGGCACCT 62.453 66.667 8.26 0.00 43.96 4.00
80 81 4.452733 AGTAGCGGCTTCGGCACC 62.453 66.667 8.26 0.00 43.96 5.01
81 82 3.188786 CAGTAGCGGCTTCGGCAC 61.189 66.667 8.26 0.00 43.96 5.01
92 93 1.480137 ACCATCTCTGACAGCAGTAGC 59.520 52.381 0.00 0.00 42.84 3.58
93 94 2.738000 GCACCATCTCTGACAGCAGTAG 60.738 54.545 0.00 0.00 42.84 2.57
94 95 1.205655 GCACCATCTCTGACAGCAGTA 59.794 52.381 0.00 0.00 42.84 2.74
95 96 0.036577 GCACCATCTCTGACAGCAGT 60.037 55.000 0.00 0.00 42.84 4.40
96 97 0.249676 AGCACCATCTCTGACAGCAG 59.750 55.000 0.00 0.00 43.67 4.24
97 98 0.689055 AAGCACCATCTCTGACAGCA 59.311 50.000 0.00 0.00 0.00 4.41
98 99 1.066286 AGAAGCACCATCTCTGACAGC 60.066 52.381 0.00 0.00 0.00 4.40
99 100 3.001414 CAAGAAGCACCATCTCTGACAG 58.999 50.000 0.00 0.00 0.00 3.51
100 101 2.369860 ACAAGAAGCACCATCTCTGACA 59.630 45.455 0.00 0.00 0.00 3.58
101 102 3.051081 ACAAGAAGCACCATCTCTGAC 57.949 47.619 0.00 0.00 0.00 3.51
102 103 4.089361 TCTACAAGAAGCACCATCTCTGA 58.911 43.478 0.00 0.00 0.00 3.27
103 104 4.431809 CTCTACAAGAAGCACCATCTCTG 58.568 47.826 0.00 0.00 0.00 3.35
104 105 3.118811 GCTCTACAAGAAGCACCATCTCT 60.119 47.826 0.00 0.00 0.00 3.10
105 106 3.118811 AGCTCTACAAGAAGCACCATCTC 60.119 47.826 0.00 0.00 0.00 2.75
106 107 2.836981 AGCTCTACAAGAAGCACCATCT 59.163 45.455 0.00 0.00 0.00 2.90
107 108 2.935201 CAGCTCTACAAGAAGCACCATC 59.065 50.000 0.00 0.00 0.00 3.51
108 109 2.355513 CCAGCTCTACAAGAAGCACCAT 60.356 50.000 0.00 0.00 0.00 3.55
109 110 1.002430 CCAGCTCTACAAGAAGCACCA 59.998 52.381 0.00 0.00 0.00 4.17
110 111 1.002544 ACCAGCTCTACAAGAAGCACC 59.997 52.381 0.00 0.00 0.00 5.01
111 112 2.072298 CACCAGCTCTACAAGAAGCAC 58.928 52.381 0.00 0.00 0.00 4.40
112 113 1.609061 GCACCAGCTCTACAAGAAGCA 60.609 52.381 0.00 0.00 37.91 3.91
113 114 1.082690 GCACCAGCTCTACAAGAAGC 58.917 55.000 0.00 0.00 37.91 3.86
114 115 1.731720 GGCACCAGCTCTACAAGAAG 58.268 55.000 0.00 0.00 41.70 2.85
115 116 0.037326 CGGCACCAGCTCTACAAGAA 60.037 55.000 0.00 0.00 41.70 2.52
116 117 0.898326 TCGGCACCAGCTCTACAAGA 60.898 55.000 0.00 0.00 41.70 3.02
117 118 0.176680 ATCGGCACCAGCTCTACAAG 59.823 55.000 0.00 0.00 41.70 3.16
118 119 0.108186 CATCGGCACCAGCTCTACAA 60.108 55.000 0.00 0.00 41.70 2.41
119 120 1.257750 ACATCGGCACCAGCTCTACA 61.258 55.000 0.00 0.00 41.70 2.74
120 121 0.528684 GACATCGGCACCAGCTCTAC 60.529 60.000 0.00 0.00 41.70 2.59
121 122 1.816537 GACATCGGCACCAGCTCTA 59.183 57.895 0.00 0.00 41.70 2.43
122 123 2.581354 GACATCGGCACCAGCTCT 59.419 61.111 0.00 0.00 41.70 4.09
123 124 2.887568 CGACATCGGCACCAGCTC 60.888 66.667 0.00 0.00 41.70 4.09
133 134 2.887568 GCACCTGCTCCGACATCG 60.888 66.667 0.00 0.00 38.21 3.84
143 144 1.424493 GCATCGACACTAGCACCTGC 61.424 60.000 0.00 0.00 42.49 4.85
144 145 0.807667 GGCATCGACACTAGCACCTG 60.808 60.000 0.00 0.00 0.00 4.00
145 146 1.517832 GGCATCGACACTAGCACCT 59.482 57.895 0.00 0.00 0.00 4.00
146 147 1.521681 GGGCATCGACACTAGCACC 60.522 63.158 0.00 0.00 0.00 5.01
147 148 1.878522 CGGGCATCGACACTAGCAC 60.879 63.158 0.00 0.00 42.43 4.40
148 149 2.049767 TCGGGCATCGACACTAGCA 61.050 57.895 0.00 0.00 43.74 3.49
149 150 2.805546 TCGGGCATCGACACTAGC 59.194 61.111 0.00 0.00 43.74 3.42
166 167 5.428888 ATCAGGCTGATCTACCGGAGGAT 62.429 52.174 24.01 11.28 42.07 3.24
167 168 4.166237 ATCAGGCTGATCTACCGGAGGA 62.166 54.545 24.01 5.94 42.07 3.71
168 169 1.825242 ATCAGGCTGATCTACCGGAGG 60.825 57.143 24.01 0.00 44.59 4.30
169 170 1.626686 ATCAGGCTGATCTACCGGAG 58.373 55.000 24.01 0.60 29.59 4.63
170 171 3.850454 ATCAGGCTGATCTACCGGA 57.150 52.632 24.01 9.17 29.59 5.14
181 182 2.581354 GTGTCAGCGGATCAGGCT 59.419 61.111 4.80 4.80 42.61 4.58
182 183 2.887568 CGTGTCAGCGGATCAGGC 60.888 66.667 0.00 0.00 0.00 4.85
190 191 3.626680 ATCACCGACCGTGTCAGCG 62.627 63.158 5.15 0.00 43.51 5.18
191 192 2.094659 CATCACCGACCGTGTCAGC 61.095 63.158 5.15 0.00 43.51 4.26
192 193 0.038618 TTCATCACCGACCGTGTCAG 60.039 55.000 5.15 0.00 43.51 3.51
193 194 0.038618 CTTCATCACCGACCGTGTCA 60.039 55.000 5.15 0.00 43.51 3.58
194 195 1.352156 GCTTCATCACCGACCGTGTC 61.352 60.000 0.00 0.00 43.51 3.67
195 196 1.374252 GCTTCATCACCGACCGTGT 60.374 57.895 0.00 0.00 43.51 4.49
196 197 0.172578 TAGCTTCATCACCGACCGTG 59.827 55.000 0.00 0.00 44.50 4.94
197 198 1.112113 ATAGCTTCATCACCGACCGT 58.888 50.000 0.00 0.00 0.00 4.83
198 199 1.202417 ACATAGCTTCATCACCGACCG 60.202 52.381 0.00 0.00 0.00 4.79
199 200 2.604046 ACATAGCTTCATCACCGACC 57.396 50.000 0.00 0.00 0.00 4.79
200 201 3.068307 AGGTACATAGCTTCATCACCGAC 59.932 47.826 0.00 0.00 0.00 4.79
201 202 3.296854 AGGTACATAGCTTCATCACCGA 58.703 45.455 0.00 0.00 0.00 4.69
202 203 3.735237 AGGTACATAGCTTCATCACCG 57.265 47.619 0.00 0.00 0.00 4.94
257 258 6.669591 TGATTTCTTCTAGAGATGTCCTTGGA 59.330 38.462 0.00 0.00 33.49 3.53
314 315 2.165319 TCGAGTGTCTTCGAGTCTGA 57.835 50.000 0.00 0.00 44.00 3.27
494 500 1.142465 CTCCAGCCCTCAGTTATGCAT 59.858 52.381 3.79 3.79 0.00 3.96
626 636 4.216708 CCCTTCTCGGAGGAAGTAATAGT 58.783 47.826 4.96 0.00 40.56 2.12
650 660 3.314553 CACACGAGGTTTACGAGTTCAT 58.685 45.455 0.00 0.00 33.07 2.57
715 725 3.012502 AGTCTGACAGTAATGTAGGGGGA 59.987 47.826 10.88 0.00 0.00 4.81
740 750 1.226030 GGCGCTAACTGTCGTGGTTT 61.226 55.000 7.64 0.00 0.00 3.27
773 783 2.222678 GCATCATGCCTTGATAGACGTG 59.777 50.000 0.00 0.00 43.40 4.49
786 796 6.535865 TGAAGAAATAACCATTTGCATCATGC 59.464 34.615 1.35 1.35 45.29 4.06
814 825 2.590007 GCTGATCCGCTGCCGAAT 60.590 61.111 1.31 0.00 35.62 3.34
882 893 2.104111 TCCCTGATCGTCTTGTTTGTGT 59.896 45.455 0.00 0.00 0.00 3.72
894 905 3.255888 TCGAATGGATACTTCCCTGATCG 59.744 47.826 0.00 0.00 41.83 3.69
957 970 7.394016 TGTGTCTGATCCTATAGAAGCAAAAA 58.606 34.615 0.00 0.00 0.00 1.94
998 1011 4.468765 TCTCTTCTTCTCTGCTTCATGG 57.531 45.455 0.00 0.00 0.00 3.66
1094 1192 1.650912 GCGTCGTAGATAAGGCCGA 59.349 57.895 0.00 0.00 40.67 5.54
1095 1193 1.724929 CGCGTCGTAGATAAGGCCG 60.725 63.158 0.00 0.00 40.67 6.13
1096 1194 1.371389 CCGCGTCGTAGATAAGGCC 60.371 63.158 4.92 0.00 40.67 5.19
1168 1513 1.136695 ACCAACGGTGTTGTAGACGAA 59.863 47.619 0.00 0.00 32.98 3.85
1243 1726 1.331756 CATTTGTATGAGCTGGCCGTC 59.668 52.381 0.00 0.00 33.37 4.79
1288 1771 2.267681 CTGTAGACGTGGCCGGAGAC 62.268 65.000 5.05 0.00 38.78 3.36
1289 1772 2.034532 TGTAGACGTGGCCGGAGA 59.965 61.111 5.05 0.00 38.78 3.71
1290 1773 2.490217 CTGTAGACGTGGCCGGAG 59.510 66.667 5.05 0.00 38.78 4.63
1291 1774 3.755628 GCTGTAGACGTGGCCGGA 61.756 66.667 5.05 0.00 38.78 5.14
1294 1777 4.735132 TGCGCTGTAGACGTGGCC 62.735 66.667 9.73 0.00 0.00 5.36
1295 1778 3.181967 CTGCGCTGTAGACGTGGC 61.182 66.667 9.73 0.00 0.00 5.01
1296 1779 1.801913 GACTGCGCTGTAGACGTGG 60.802 63.158 20.50 0.00 0.00 4.94
1297 1780 2.146519 CGACTGCGCTGTAGACGTG 61.147 63.158 20.50 2.81 30.96 4.49
1298 1781 2.176055 CGACTGCGCTGTAGACGT 59.824 61.111 20.50 0.00 30.96 4.34
1299 1782 1.863880 GACGACTGCGCTGTAGACG 60.864 63.158 28.67 24.23 42.48 4.18
1300 1783 1.514443 GGACGACTGCGCTGTAGAC 60.514 63.158 28.67 22.95 42.48 2.59
1301 1784 1.923227 CTGGACGACTGCGCTGTAGA 61.923 60.000 28.67 10.12 42.48 2.59
1302 1785 1.515088 CTGGACGACTGCGCTGTAG 60.515 63.158 20.50 21.53 42.48 2.74
1303 1786 2.566529 CTGGACGACTGCGCTGTA 59.433 61.111 20.50 3.23 42.48 2.74
1310 1793 4.742201 CCGTGGGCTGGACGACTG 62.742 72.222 0.00 0.00 39.21 3.51
1311 1794 4.988716 TCCGTGGGCTGGACGACT 62.989 66.667 0.00 0.00 39.21 4.18
1312 1795 4.736896 GTCCGTGGGCTGGACGAC 62.737 72.222 8.02 0.00 45.82 4.34
1321 1804 4.675029 GGTGGTCGTGTCCGTGGG 62.675 72.222 0.00 0.00 35.01 4.61
1322 1805 3.858868 CTGGTGGTCGTGTCCGTGG 62.859 68.421 0.00 0.00 35.01 4.94
1323 1806 2.355837 CTGGTGGTCGTGTCCGTG 60.356 66.667 0.00 0.00 35.01 4.94
1324 1807 4.295119 GCTGGTGGTCGTGTCCGT 62.295 66.667 0.00 0.00 35.01 4.69
1326 1809 4.295119 ACGCTGGTGGTCGTGTCC 62.295 66.667 0.00 0.00 37.55 4.02
1337 1820 3.655810 GAGAGGCAGACCACGCTGG 62.656 68.421 2.92 2.92 45.02 4.85
1338 1821 2.125753 GAGAGGCAGACCACGCTG 60.126 66.667 0.00 0.00 39.06 5.18
1339 1822 1.954362 GATGAGAGGCAGACCACGCT 61.954 60.000 0.00 0.00 39.06 5.07
1340 1823 1.520342 GATGAGAGGCAGACCACGC 60.520 63.158 0.00 0.00 39.06 5.34
1341 1824 1.226802 CGATGAGAGGCAGACCACG 60.227 63.158 0.00 0.00 39.06 4.94
1342 1825 0.247736 AACGATGAGAGGCAGACCAC 59.752 55.000 0.00 0.00 39.06 4.16
1343 1826 0.976641 AAACGATGAGAGGCAGACCA 59.023 50.000 0.00 0.00 39.06 4.02
1344 1827 1.646189 GAAACGATGAGAGGCAGACC 58.354 55.000 0.00 0.00 0.00 3.85
1345 1828 1.646189 GGAAACGATGAGAGGCAGAC 58.354 55.000 0.00 0.00 0.00 3.51
1420 1903 2.029666 CGGAGATGTCGATGGGGC 59.970 66.667 0.00 0.00 0.00 5.80
1429 1912 1.333177 GTAGATGAGGCCGGAGATGT 58.667 55.000 5.05 0.00 0.00 3.06
1437 1920 1.065928 CGACGTGGTAGATGAGGCC 59.934 63.158 0.00 0.00 0.00 5.19
1561 2044 1.406539 CAAGTGGCAAGTGGGATATGC 59.593 52.381 0.00 0.00 39.33 3.14
1622 2112 7.036829 CCATGCACTAATTGACATTGATTTGA 58.963 34.615 0.00 0.00 0.00 2.69
1648 2138 7.523293 TGTAATGGCAATTTTCTTCTCTTCA 57.477 32.000 0.00 0.00 0.00 3.02
1649 2139 7.009907 GCATGTAATGGCAATTTTCTTCTCTTC 59.990 37.037 0.00 0.00 46.86 2.87
1650 2140 6.815142 GCATGTAATGGCAATTTTCTTCTCTT 59.185 34.615 0.00 0.00 46.86 2.85
1651 2141 6.071221 TGCATGTAATGGCAATTTTCTTCTCT 60.071 34.615 0.00 0.00 46.86 3.10
1652 2142 6.101332 TGCATGTAATGGCAATTTTCTTCTC 58.899 36.000 0.00 0.00 46.86 2.87
1653 2143 6.040209 TGCATGTAATGGCAATTTTCTTCT 57.960 33.333 0.00 0.00 46.86 2.85
1654 2144 5.220529 GCTGCATGTAATGGCAATTTTCTTC 60.221 40.000 0.00 0.00 46.86 2.87
1655 2145 4.632688 GCTGCATGTAATGGCAATTTTCTT 59.367 37.500 0.00 0.00 46.86 2.52
1656 2146 4.186159 GCTGCATGTAATGGCAATTTTCT 58.814 39.130 0.00 0.00 46.86 2.52
1682 2172 1.356624 GCATGCAAGTGGGATACGC 59.643 57.895 14.21 0.00 37.60 4.42
1684 2174 1.097547 AGCGCATGCAAGTGGGATAC 61.098 55.000 19.57 0.00 46.23 2.24
1711 2201 3.319198 GAGGCCCACGTCCTTCCA 61.319 66.667 0.00 0.00 33.24 3.53
1770 2260 4.098654 ACGTTAGAGATCCTCATCAAGTGG 59.901 45.833 0.00 0.00 32.06 4.00
1781 2271 6.228258 TGGCCATAATTTACGTTAGAGATCC 58.772 40.000 0.00 0.00 0.00 3.36
1808 2298 1.209275 CCGCCTATCAACGAGCTTCG 61.209 60.000 0.00 0.00 46.93 3.79
1817 2308 1.672854 CCGAGTGGTCCGCCTATCAA 61.673 60.000 0.00 0.00 35.27 2.57
1829 2320 5.505173 AAGCATAAAATTCATCCGAGTGG 57.495 39.130 0.00 0.00 0.00 4.00
1838 2329 7.296628 ACAACCCACTTAAGCATAAAATTCA 57.703 32.000 1.29 0.00 0.00 2.57
1842 2333 8.240267 AGTAAACAACCCACTTAAGCATAAAA 57.760 30.769 1.29 0.00 0.00 1.52
1844 2335 6.431852 GGAGTAAACAACCCACTTAAGCATAA 59.568 38.462 1.29 0.00 0.00 1.90
1851 2342 3.387374 TGTCGGAGTAAACAACCCACTTA 59.613 43.478 0.00 0.00 0.00 2.24
1908 2420 4.389576 CAGTTCTTGCACCGCGCC 62.390 66.667 0.00 0.00 41.33 6.53
1926 2438 1.323271 TGACGAGGAGTGCCCATCTC 61.323 60.000 0.00 0.00 37.41 2.75
2096 2609 0.460284 GCCGAGTGAATGATCCGTGT 60.460 55.000 0.00 0.00 0.00 4.49
2100 2613 0.815615 GGTGGCCGAGTGAATGATCC 60.816 60.000 0.00 0.00 0.00 3.36
2117 2630 4.338539 GAGTGACGACGTGCGGGT 62.339 66.667 4.58 0.00 46.49 5.28
2149 2662 2.894387 GTCTGGCTGAGCGATGGC 60.894 66.667 0.00 0.00 40.37 4.40
2185 2698 0.473755 TGATGCTGGTGTGTCCAACT 59.526 50.000 0.00 0.00 46.59 3.16
2195 2708 2.360350 CGGCCAAGTGATGCTGGT 60.360 61.111 2.24 0.00 0.00 4.00
2215 2728 2.230940 CGCGGAGTAACGATGCTGG 61.231 63.158 0.00 0.00 35.47 4.85
2216 2729 2.230940 CCGCGGAGTAACGATGCTG 61.231 63.158 24.07 0.00 35.47 4.41
2217 2730 2.104331 CCGCGGAGTAACGATGCT 59.896 61.111 24.07 0.00 35.47 3.79
2233 2746 3.933900 TACGAAGTGACGACGCGCC 62.934 63.158 5.73 0.00 45.73 6.53
2235 2748 1.862147 CCTACGAAGTGACGACGCG 60.862 63.158 3.53 3.53 45.73 6.01
2239 2752 2.292569 GGCATATCCTACGAAGTGACGA 59.707 50.000 0.00 0.00 45.73 4.20
2249 2762 7.363355 CATCCGGATGATATAGGCATATCCTAC 60.363 44.444 36.42 5.18 44.27 3.18
2250 2763 6.665248 CATCCGGATGATATAGGCATATCCTA 59.335 42.308 36.42 0.00 44.91 2.94
2251 2764 5.483231 CATCCGGATGATATAGGCATATCCT 59.517 44.000 36.42 0.00 43.90 3.24
2252 2765 5.247110 ACATCCGGATGATATAGGCATATCC 59.753 44.000 43.42 0.00 41.63 2.59
2253 2766 6.352016 ACATCCGGATGATATAGGCATATC 57.648 41.667 43.42 0.00 42.34 1.63
2254 2767 5.247110 GGACATCCGGATGATATAGGCATAT 59.753 44.000 43.42 21.38 41.20 1.78
2255 2768 4.588951 GGACATCCGGATGATATAGGCATA 59.411 45.833 43.42 1.18 41.20 3.14
2256 2769 3.389329 GGACATCCGGATGATATAGGCAT 59.611 47.826 43.42 22.60 41.20 4.40
2257 2770 2.766263 GGACATCCGGATGATATAGGCA 59.234 50.000 43.42 1.93 41.20 4.75
2258 2771 2.103263 GGGACATCCGGATGATATAGGC 59.897 54.545 43.42 21.61 41.20 3.93
2259 2772 3.374764 TGGGACATCCGGATGATATAGG 58.625 50.000 43.42 20.98 41.20 2.57
2275 2788 2.823829 GAATGGCGACGCATGGGAC 61.824 63.158 23.09 9.59 0.00 4.46
2276 2789 2.513666 GAATGGCGACGCATGGGA 60.514 61.111 23.09 0.00 0.00 4.37
2277 2790 2.514592 AGAATGGCGACGCATGGG 60.515 61.111 23.09 8.44 0.00 4.00
2278 2791 2.537560 GGAGAATGGCGACGCATGG 61.538 63.158 23.09 0.00 0.00 3.66
2279 2792 2.874694 CGGAGAATGGCGACGCATG 61.875 63.158 23.09 0.00 0.00 4.06
2280 2793 2.586079 CGGAGAATGGCGACGCAT 60.586 61.111 23.09 10.40 0.00 4.73
2281 2794 4.812476 CCGGAGAATGGCGACGCA 62.812 66.667 23.09 8.33 0.00 5.24
2282 2795 4.508128 TCCGGAGAATGGCGACGC 62.508 66.667 12.43 12.43 0.00 5.19
2283 2796 2.165301 GTTCCGGAGAATGGCGACG 61.165 63.158 3.34 0.00 33.67 5.12
2284 2797 2.165301 CGTTCCGGAGAATGGCGAC 61.165 63.158 3.34 0.00 35.67 5.19
2285 2798 2.183300 CGTTCCGGAGAATGGCGA 59.817 61.111 3.34 0.00 35.67 5.54
2286 2799 3.564027 GCGTTCCGGAGAATGGCG 61.564 66.667 3.34 5.33 39.10 5.69
2287 2800 3.564027 CGCGTTCCGGAGAATGGC 61.564 66.667 3.34 4.24 39.10 4.40
2288 2801 2.125673 ACGCGTTCCGGAGAATGG 60.126 61.111 5.58 0.00 42.52 3.16
2289 2802 0.099968 TAGACGCGTTCCGGAGAATG 59.900 55.000 15.53 0.00 42.52 2.67
2290 2803 1.030457 ATAGACGCGTTCCGGAGAAT 58.970 50.000 15.53 0.00 42.52 2.40
2291 2804 0.099968 CATAGACGCGTTCCGGAGAA 59.900 55.000 15.53 0.00 42.52 2.87
2292 2805 1.028330 ACATAGACGCGTTCCGGAGA 61.028 55.000 15.53 0.00 42.52 3.71
2293 2806 0.591741 GACATAGACGCGTTCCGGAG 60.592 60.000 15.53 4.43 42.52 4.63
2294 2807 1.307355 TGACATAGACGCGTTCCGGA 61.307 55.000 15.53 0.00 42.52 5.14
2295 2808 1.138036 TGACATAGACGCGTTCCGG 59.862 57.895 15.53 6.80 42.52 5.14
2296 2809 0.179171 AGTGACATAGACGCGTTCCG 60.179 55.000 15.53 5.19 44.21 4.30
2297 2810 1.269166 CAGTGACATAGACGCGTTCC 58.731 55.000 15.53 0.11 0.00 3.62
2298 2811 1.269166 CCAGTGACATAGACGCGTTC 58.731 55.000 15.53 7.14 0.00 3.95
2299 2812 0.108804 CCCAGTGACATAGACGCGTT 60.109 55.000 15.53 6.16 0.00 4.84
2300 2813 0.963856 TCCCAGTGACATAGACGCGT 60.964 55.000 13.85 13.85 0.00 6.01
2301 2814 0.525668 GTCCCAGTGACATAGACGCG 60.526 60.000 3.53 3.53 43.85 6.01
2302 2815 3.347411 GTCCCAGTGACATAGACGC 57.653 57.895 0.00 0.00 43.85 5.19
2310 2823 1.535462 CAAACGGAATGTCCCAGTGAC 59.465 52.381 0.00 0.00 44.72 3.67
2311 2824 1.142060 ACAAACGGAATGTCCCAGTGA 59.858 47.619 0.00 0.00 31.13 3.41
2312 2825 1.535462 GACAAACGGAATGTCCCAGTG 59.465 52.381 6.30 0.00 41.02 3.66
2313 2826 1.876416 CGACAAACGGAATGTCCCAGT 60.876 52.381 10.59 0.00 43.34 4.00
2314 2827 0.796312 CGACAAACGGAATGTCCCAG 59.204 55.000 10.59 0.00 43.34 4.45
2315 2828 1.231958 GCGACAAACGGAATGTCCCA 61.232 55.000 10.59 0.00 43.34 4.37
2316 2829 1.500396 GCGACAAACGGAATGTCCC 59.500 57.895 10.59 0.63 43.34 4.46
2317 2830 1.231958 TGGCGACAAACGGAATGTCC 61.232 55.000 0.00 5.26 43.34 4.02
2318 2831 0.110373 GTGGCGACAAACGGAATGTC 60.110 55.000 0.00 7.25 46.06 3.06
2319 2832 0.534203 AGTGGCGACAAACGGAATGT 60.534 50.000 0.00 0.00 46.06 2.71
2320 2833 0.165944 GAGTGGCGACAAACGGAATG 59.834 55.000 0.00 0.00 46.06 2.67
2321 2834 0.953960 GGAGTGGCGACAAACGGAAT 60.954 55.000 0.00 0.00 46.06 3.01
2322 2835 1.595929 GGAGTGGCGACAAACGGAA 60.596 57.895 0.00 0.00 46.06 4.30
2323 2836 2.029964 GGAGTGGCGACAAACGGA 59.970 61.111 0.00 0.00 46.06 4.69
2324 2837 2.280524 TGGAGTGGCGACAAACGG 60.281 61.111 0.00 0.00 46.06 4.44
2325 2838 2.935955 GTGGAGTGGCGACAAACG 59.064 61.111 0.00 0.00 46.06 3.60
2326 2839 2.604174 CCGTGGAGTGGCGACAAAC 61.604 63.158 0.00 0.00 46.06 2.93
2327 2840 2.107041 ATCCGTGGAGTGGCGACAAA 62.107 55.000 0.00 0.00 46.06 2.83
2328 2841 2.501223 GATCCGTGGAGTGGCGACAA 62.501 60.000 0.00 0.00 46.06 3.18
2329 2842 2.994995 ATCCGTGGAGTGGCGACA 60.995 61.111 0.45 0.00 38.70 4.35
2330 2843 2.202756 GATCCGTGGAGTGGCGAC 60.203 66.667 0.00 0.00 0.00 5.19
2331 2844 3.822192 CGATCCGTGGAGTGGCGA 61.822 66.667 0.00 0.00 0.00 5.54
2342 2855 0.308068 AGTGATGTAGACGCGATCCG 59.692 55.000 15.93 2.55 44.21 4.18
2343 2856 1.660614 CGAGTGATGTAGACGCGATCC 60.661 57.143 15.93 0.66 38.71 3.36
2344 2857 1.260825 TCGAGTGATGTAGACGCGATC 59.739 52.381 15.93 5.28 40.11 3.69
2345 2858 1.003759 GTCGAGTGATGTAGACGCGAT 60.004 52.381 15.93 2.85 45.28 4.58
2346 2859 0.372679 GTCGAGTGATGTAGACGCGA 59.627 55.000 15.93 0.00 42.25 5.87
2347 2860 2.842995 GTCGAGTGATGTAGACGCG 58.157 57.895 3.53 3.53 37.89 6.01
2350 2863 1.536149 GTGCGTCGAGTGATGTAGAC 58.464 55.000 0.00 0.00 33.44 2.59
2351 2864 0.450583 GGTGCGTCGAGTGATGTAGA 59.549 55.000 0.00 0.00 33.44 2.59
2352 2865 0.861866 CGGTGCGTCGAGTGATGTAG 60.862 60.000 0.00 0.00 33.44 2.74
2353 2866 1.135939 CGGTGCGTCGAGTGATGTA 59.864 57.895 0.00 0.00 33.44 2.29
2354 2867 2.126463 CGGTGCGTCGAGTGATGT 60.126 61.111 0.00 0.00 33.44 3.06
2355 2868 3.545481 GCGGTGCGTCGAGTGATG 61.545 66.667 0.00 0.00 0.00 3.07
2367 2880 3.071459 GAAGTGACGATGCGCGGTG 62.071 63.158 8.83 0.00 46.49 4.94
2368 2881 2.809601 GAAGTGACGATGCGCGGT 60.810 61.111 8.83 0.00 46.49 5.68
2369 2882 2.809174 TGAAGTGACGATGCGCGG 60.809 61.111 8.83 0.00 46.49 6.46
2371 2884 1.417592 CTGTGAAGTGACGATGCGC 59.582 57.895 0.00 0.00 0.00 6.09
2372 2885 1.284297 TGCTGTGAAGTGACGATGCG 61.284 55.000 0.00 0.00 0.00 4.73
2373 2886 0.164647 GTGCTGTGAAGTGACGATGC 59.835 55.000 0.00 0.00 0.00 3.91
2374 2887 0.436150 CGTGCTGTGAAGTGACGATG 59.564 55.000 0.00 0.00 31.71 3.84
2375 2888 1.284982 GCGTGCTGTGAAGTGACGAT 61.285 55.000 0.00 0.00 31.71 3.73
2376 2889 1.949133 GCGTGCTGTGAAGTGACGA 60.949 57.895 0.00 0.00 31.71 4.20
2377 2890 2.546321 GCGTGCTGTGAAGTGACG 59.454 61.111 0.00 0.00 0.00 4.35
2378 2891 2.147204 GACGCGTGCTGTGAAGTGAC 62.147 60.000 20.70 0.00 0.00 3.67
2379 2892 1.949133 GACGCGTGCTGTGAAGTGA 60.949 57.895 20.70 0.00 0.00 3.41
2380 2893 1.951130 AGACGCGTGCTGTGAAGTG 60.951 57.895 20.70 0.00 0.00 3.16
2381 2894 2.417516 AGACGCGTGCTGTGAAGT 59.582 55.556 20.70 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.