Multiple sequence alignment - TraesCS4A01G203500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G203500 chr4A 100.000 2783 0 0 1 2783 494046656 494043874 0.000000e+00 5140.0
1 TraesCS4A01G203500 chr4A 83.629 788 94 21 1114 1896 494457897 494457140 0.000000e+00 708.0
2 TraesCS4A01G203500 chr4A 93.574 249 16 0 508 756 73937952 73938200 3.390000e-99 372.0
3 TraesCS4A01G203500 chr4A 93.469 245 16 0 512 756 575731073 575730829 5.660000e-97 364.0
4 TraesCS4A01G203500 chr4A 86.149 296 37 3 94 387 154521132 154521425 1.610000e-82 316.0
5 TraesCS4A01G203500 chr4D 94.831 1180 37 11 755 1920 82739294 82738125 0.000000e+00 1820.0
6 TraesCS4A01G203500 chr4D 90.716 517 37 6 3 514 82739803 82739293 0.000000e+00 678.0
7 TraesCS4A01G203500 chr4D 86.278 532 64 6 1323 1850 82819918 82819392 1.120000e-158 569.0
8 TraesCS4A01G203500 chr4D 85.294 306 34 8 94 396 319249195 319248898 3.480000e-79 305.0
9 TraesCS4A01G203500 chr4D 84.691 307 42 4 89 393 319170802 319171105 4.500000e-78 302.0
10 TraesCS4A01G203500 chr4D 83.962 318 46 4 89 405 421335511 421335198 1.620000e-77 300.0
11 TraesCS4A01G203500 chr4B 92.509 1148 50 12 814 1949 117083882 117082759 0.000000e+00 1611.0
12 TraesCS4A01G203500 chr4B 90.411 1022 63 10 853 1864 71753654 71754650 0.000000e+00 1312.0
13 TraesCS4A01G203500 chr4B 90.235 809 44 11 792 1589 117106341 117105557 0.000000e+00 1024.0
14 TraesCS4A01G203500 chr4B 86.924 543 60 7 1330 1863 117183020 117182480 1.430000e-167 599.0
15 TraesCS4A01G203500 chr4B 85.065 308 38 6 94 396 396703999 396703695 9.680000e-80 307.0
16 TraesCS4A01G203500 chr4B 95.349 86 4 0 3 88 117085208 117085123 1.340000e-28 137.0
17 TraesCS4A01G203500 chr4B 95.349 86 4 0 3 88 117106547 117106462 1.340000e-28 137.0
18 TraesCS4A01G203500 chr4B 93.333 90 3 3 1 88 71707285 71707373 2.250000e-26 130.0
19 TraesCS4A01G203500 chr4B 91.111 90 5 3 1 88 117085420 117085332 4.870000e-23 119.0
20 TraesCS4A01G203500 chr4B 84.158 101 10 3 762 860 71707675 71707771 2.950000e-15 93.5
21 TraesCS4A01G203500 chr1B 99.044 837 8 0 1947 2783 107372334 107373170 0.000000e+00 1502.0
22 TraesCS4A01G203500 chr1B 99.042 835 6 1 1949 2783 481291294 481290462 0.000000e+00 1496.0
23 TraesCS4A01G203500 chr1B 98.922 835 9 0 1949 2783 60199350 60198516 0.000000e+00 1493.0
24 TraesCS4A01G203500 chr1B 98.807 838 10 0 1946 2783 593771924 593772761 0.000000e+00 1493.0
25 TraesCS4A01G203500 chr1B 98.922 835 7 1 1949 2783 560501968 560501136 0.000000e+00 1491.0
26 TraesCS4A01G203500 chr1B 98.456 842 13 0 1942 2783 44512391 44511550 0.000000e+00 1483.0
27 TraesCS4A01G203500 chr1B 94.262 244 14 0 513 756 445197571 445197814 9.410000e-100 374.0
28 TraesCS4A01G203500 chr2B 98.807 838 8 1 1948 2783 36894778 36893941 0.000000e+00 1491.0
29 TraesCS4A01G203500 chr6A 98.686 837 11 0 1947 2783 322993177 322992341 0.000000e+00 1485.0
30 TraesCS4A01G203500 chr6A 78.266 796 126 27 1116 1896 16071757 16072520 4.200000e-128 468.0
31 TraesCS4A01G203500 chr6A 94.191 241 14 0 513 753 181589397 181589637 4.380000e-98 368.0
32 TraesCS4A01G203500 chr3B 98.686 837 7 1 1947 2783 675633494 675634326 0.000000e+00 1482.0
33 TraesCS4A01G203500 chr6D 81.980 505 69 15 1403 1896 15400938 15401431 2.580000e-110 409.0
34 TraesCS4A01G203500 chrUn 94.286 245 14 0 510 754 320156025 320156269 2.620000e-100 375.0
35 TraesCS4A01G203500 chrUn 83.974 312 42 6 82 387 289820610 289820919 2.710000e-75 292.0
36 TraesCS4A01G203500 chr7A 94.628 242 13 0 513 754 307962426 307962667 2.620000e-100 375.0
37 TraesCS4A01G203500 chr5B 94.191 241 14 0 513 753 618128084 618128324 4.380000e-98 368.0
38 TraesCS4A01G203500 chr2A 93.227 251 15 2 513 762 100112776 100112527 4.380000e-98 368.0
39 TraesCS4A01G203500 chr2A 84.746 59 9 0 1583 1641 37199654 37199596 2.990000e-05 60.2
40 TraesCS4A01G203500 chr5A 93.802 242 15 0 512 753 32665798 32665557 5.660000e-97 364.0
41 TraesCS4A01G203500 chr7D 85.294 306 44 1 87 391 45802730 45803035 5.790000e-82 315.0
42 TraesCS4A01G203500 chr1D 85.382 301 40 3 89 387 50556166 50556464 2.690000e-80 309.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G203500 chr4A 494043874 494046656 2782 True 5140.000000 5140 100.000000 1 2783 1 chr4A.!!$R1 2782
1 TraesCS4A01G203500 chr4A 494457140 494457897 757 True 708.000000 708 83.629000 1114 1896 1 chr4A.!!$R2 782
2 TraesCS4A01G203500 chr4D 82738125 82739803 1678 True 1249.000000 1820 92.773500 3 1920 2 chr4D.!!$R4 1917
3 TraesCS4A01G203500 chr4D 82819392 82819918 526 True 569.000000 569 86.278000 1323 1850 1 chr4D.!!$R1 527
4 TraesCS4A01G203500 chr4B 71753654 71754650 996 False 1312.000000 1312 90.411000 853 1864 1 chr4B.!!$F1 1011
5 TraesCS4A01G203500 chr4B 117082759 117085420 2661 True 622.333333 1611 92.989667 1 1949 3 chr4B.!!$R3 1948
6 TraesCS4A01G203500 chr4B 117182480 117183020 540 True 599.000000 599 86.924000 1330 1863 1 chr4B.!!$R1 533
7 TraesCS4A01G203500 chr4B 117105557 117106547 990 True 580.500000 1024 92.792000 3 1589 2 chr4B.!!$R4 1586
8 TraesCS4A01G203500 chr1B 107372334 107373170 836 False 1502.000000 1502 99.044000 1947 2783 1 chr1B.!!$F1 836
9 TraesCS4A01G203500 chr1B 481290462 481291294 832 True 1496.000000 1496 99.042000 1949 2783 1 chr1B.!!$R3 834
10 TraesCS4A01G203500 chr1B 60198516 60199350 834 True 1493.000000 1493 98.922000 1949 2783 1 chr1B.!!$R2 834
11 TraesCS4A01G203500 chr1B 593771924 593772761 837 False 1493.000000 1493 98.807000 1946 2783 1 chr1B.!!$F3 837
12 TraesCS4A01G203500 chr1B 560501136 560501968 832 True 1491.000000 1491 98.922000 1949 2783 1 chr1B.!!$R4 834
13 TraesCS4A01G203500 chr1B 44511550 44512391 841 True 1483.000000 1483 98.456000 1942 2783 1 chr1B.!!$R1 841
14 TraesCS4A01G203500 chr2B 36893941 36894778 837 True 1491.000000 1491 98.807000 1948 2783 1 chr2B.!!$R1 835
15 TraesCS4A01G203500 chr6A 322992341 322993177 836 True 1485.000000 1485 98.686000 1947 2783 1 chr6A.!!$R1 836
16 TraesCS4A01G203500 chr6A 16071757 16072520 763 False 468.000000 468 78.266000 1116 1896 1 chr6A.!!$F1 780
17 TraesCS4A01G203500 chr3B 675633494 675634326 832 False 1482.000000 1482 98.686000 1947 2783 1 chr3B.!!$F1 836

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 1028 0.040058 TGCCATGCCACTTCATTCCT 59.960 50.0 0.00 0.0 0.00 3.36 F
1018 2655 0.672342 AGTATAAGTAGGCACGCCCG 59.328 55.0 3.95 0.0 39.21 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1360 3006 0.250858 TGACATGGAAGGTGCACTGG 60.251 55.000 17.98 1.43 0.0 4.0 R
2449 4128 1.371558 GGAGTGCTCGGAAACAGGT 59.628 57.895 0.00 0.00 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
90 93 8.504812 GTAGAATACTGCGTTTTATCCTACTC 57.495 38.462 0.00 0.00 38.91 2.59
91 94 7.349412 AGAATACTGCGTTTTATCCTACTCT 57.651 36.000 0.00 0.00 0.00 3.24
92 95 7.203910 AGAATACTGCGTTTTATCCTACTCTG 58.796 38.462 0.00 0.00 0.00 3.35
93 96 4.803098 ACTGCGTTTTATCCTACTCTGT 57.197 40.909 0.00 0.00 0.00 3.41
94 97 4.745649 ACTGCGTTTTATCCTACTCTGTC 58.254 43.478 0.00 0.00 0.00 3.51
95 98 4.219944 ACTGCGTTTTATCCTACTCTGTCA 59.780 41.667 0.00 0.00 0.00 3.58
96 99 4.744570 TGCGTTTTATCCTACTCTGTCAG 58.255 43.478 0.00 0.00 0.00 3.51
97 100 4.113354 GCGTTTTATCCTACTCTGTCAGG 58.887 47.826 0.00 0.00 0.00 3.86
98 101 4.381718 GCGTTTTATCCTACTCTGTCAGGT 60.382 45.833 0.00 0.00 33.37 4.00
99 102 5.103000 CGTTTTATCCTACTCTGTCAGGTG 58.897 45.833 0.00 0.00 33.37 4.00
100 103 5.105877 CGTTTTATCCTACTCTGTCAGGTGA 60.106 44.000 0.00 0.00 33.37 4.02
101 104 6.571731 CGTTTTATCCTACTCTGTCAGGTGAA 60.572 42.308 0.00 0.00 33.37 3.18
102 105 6.928348 TTTATCCTACTCTGTCAGGTGAAA 57.072 37.500 0.00 0.00 33.37 2.69
103 106 6.928348 TTATCCTACTCTGTCAGGTGAAAA 57.072 37.500 0.00 0.00 33.37 2.29
104 107 4.873746 TCCTACTCTGTCAGGTGAAAAG 57.126 45.455 0.00 0.00 33.37 2.27
105 108 4.223953 TCCTACTCTGTCAGGTGAAAAGT 58.776 43.478 0.00 0.00 33.37 2.66
106 109 4.039245 TCCTACTCTGTCAGGTGAAAAGTG 59.961 45.833 0.00 0.00 33.37 3.16
107 110 3.914426 ACTCTGTCAGGTGAAAAGTGT 57.086 42.857 0.00 0.00 0.00 3.55
108 111 5.010719 CCTACTCTGTCAGGTGAAAAGTGTA 59.989 44.000 0.00 6.05 0.00 2.90
109 112 4.694339 ACTCTGTCAGGTGAAAAGTGTAC 58.306 43.478 0.00 0.00 0.00 2.90
110 113 4.161565 ACTCTGTCAGGTGAAAAGTGTACA 59.838 41.667 0.00 0.00 0.00 2.90
111 114 5.163301 ACTCTGTCAGGTGAAAAGTGTACAT 60.163 40.000 0.00 0.00 0.00 2.29
112 115 6.041637 ACTCTGTCAGGTGAAAAGTGTACATA 59.958 38.462 0.00 0.00 0.00 2.29
113 116 7.004555 TCTGTCAGGTGAAAAGTGTACATAT 57.995 36.000 0.00 0.00 0.00 1.78
114 117 8.129496 TCTGTCAGGTGAAAAGTGTACATATA 57.871 34.615 0.00 0.00 0.00 0.86
115 118 8.251026 TCTGTCAGGTGAAAAGTGTACATATAG 58.749 37.037 0.00 0.00 0.00 1.31
116 119 8.129496 TGTCAGGTGAAAAGTGTACATATAGA 57.871 34.615 0.00 0.00 0.00 1.98
117 120 8.590204 TGTCAGGTGAAAAGTGTACATATAGAA 58.410 33.333 0.00 0.00 0.00 2.10
118 121 9.431887 GTCAGGTGAAAAGTGTACATATAGAAA 57.568 33.333 0.00 0.00 0.00 2.52
171 174 8.729805 AAAATGAATTAAAAAGGTGCAAGTCA 57.270 26.923 0.00 0.00 30.65 3.41
172 175 8.907222 AAATGAATTAAAAAGGTGCAAGTCAT 57.093 26.923 0.00 0.00 37.31 3.06
173 176 8.538409 AATGAATTAAAAAGGTGCAAGTCATC 57.462 30.769 0.00 0.00 35.38 2.92
174 177 7.048629 TGAATTAAAAAGGTGCAAGTCATCA 57.951 32.000 0.00 0.00 0.00 3.07
175 178 7.669427 TGAATTAAAAAGGTGCAAGTCATCAT 58.331 30.769 0.00 0.00 0.00 2.45
176 179 8.149647 TGAATTAAAAAGGTGCAAGTCATCATT 58.850 29.630 0.00 0.00 0.00 2.57
177 180 8.907222 AATTAAAAAGGTGCAAGTCATCATTT 57.093 26.923 0.00 0.00 28.84 2.32
178 181 7.945033 TTAAAAAGGTGCAAGTCATCATTTC 57.055 32.000 0.00 0.00 27.69 2.17
179 182 5.796424 AAAAGGTGCAAGTCATCATTTCT 57.204 34.783 0.00 0.00 0.00 2.52
180 183 5.382618 AAAGGTGCAAGTCATCATTTCTC 57.617 39.130 0.00 0.00 0.00 2.87
181 184 4.298103 AGGTGCAAGTCATCATTTCTCT 57.702 40.909 0.00 0.00 0.00 3.10
182 185 4.260170 AGGTGCAAGTCATCATTTCTCTC 58.740 43.478 0.00 0.00 0.00 3.20
183 186 4.005650 GGTGCAAGTCATCATTTCTCTCA 58.994 43.478 0.00 0.00 0.00 3.27
184 187 4.639310 GGTGCAAGTCATCATTTCTCTCAT 59.361 41.667 0.00 0.00 0.00 2.90
185 188 5.220815 GGTGCAAGTCATCATTTCTCTCATC 60.221 44.000 0.00 0.00 0.00 2.92
186 189 5.585445 GTGCAAGTCATCATTTCTCTCATCT 59.415 40.000 0.00 0.00 0.00 2.90
187 190 6.093771 GTGCAAGTCATCATTTCTCTCATCTT 59.906 38.462 0.00 0.00 0.00 2.40
188 191 6.657966 TGCAAGTCATCATTTCTCTCATCTTT 59.342 34.615 0.00 0.00 0.00 2.52
189 192 7.825761 TGCAAGTCATCATTTCTCTCATCTTTA 59.174 33.333 0.00 0.00 0.00 1.85
190 193 8.671921 GCAAGTCATCATTTCTCTCATCTTTAA 58.328 33.333 0.00 0.00 0.00 1.52
198 201 9.973661 TCATTTCTCTCATCTTTAATTACCCAA 57.026 29.630 0.00 0.00 0.00 4.12
200 203 8.575649 TTTCTCTCATCTTTAATTACCCAACC 57.424 34.615 0.00 0.00 0.00 3.77
201 204 6.659824 TCTCTCATCTTTAATTACCCAACCC 58.340 40.000 0.00 0.00 0.00 4.11
202 205 5.762279 TCTCATCTTTAATTACCCAACCCC 58.238 41.667 0.00 0.00 0.00 4.95
203 206 4.874199 TCATCTTTAATTACCCAACCCCC 58.126 43.478 0.00 0.00 0.00 5.40
204 207 4.295238 TCATCTTTAATTACCCAACCCCCA 59.705 41.667 0.00 0.00 0.00 4.96
205 208 4.761591 TCTTTAATTACCCAACCCCCAA 57.238 40.909 0.00 0.00 0.00 4.12
206 209 5.292550 TCTTTAATTACCCAACCCCCAAT 57.707 39.130 0.00 0.00 0.00 3.16
207 210 5.026790 TCTTTAATTACCCAACCCCCAATG 58.973 41.667 0.00 0.00 0.00 2.82
208 211 4.694280 TTAATTACCCAACCCCCAATGA 57.306 40.909 0.00 0.00 0.00 2.57
209 212 2.846665 ATTACCCAACCCCCAATGAG 57.153 50.000 0.00 0.00 0.00 2.90
210 213 0.040499 TTACCCAACCCCCAATGAGC 59.960 55.000 0.00 0.00 0.00 4.26
211 214 0.849094 TACCCAACCCCCAATGAGCT 60.849 55.000 0.00 0.00 0.00 4.09
212 215 0.849094 ACCCAACCCCCAATGAGCTA 60.849 55.000 0.00 0.00 0.00 3.32
213 216 0.557729 CCCAACCCCCAATGAGCTAT 59.442 55.000 0.00 0.00 0.00 2.97
214 217 1.780309 CCCAACCCCCAATGAGCTATA 59.220 52.381 0.00 0.00 0.00 1.31
215 218 2.176798 CCCAACCCCCAATGAGCTATAA 59.823 50.000 0.00 0.00 0.00 0.98
216 219 3.490348 CCAACCCCCAATGAGCTATAAG 58.510 50.000 0.00 0.00 0.00 1.73
217 220 3.117512 CCAACCCCCAATGAGCTATAAGT 60.118 47.826 0.00 0.00 0.00 2.24
218 221 3.864789 ACCCCCAATGAGCTATAAGTG 57.135 47.619 0.00 0.00 0.00 3.16
219 222 2.158608 ACCCCCAATGAGCTATAAGTGC 60.159 50.000 0.00 0.00 0.00 4.40
220 223 2.158623 CCCCCAATGAGCTATAAGTGCA 60.159 50.000 0.00 0.00 0.00 4.57
221 224 3.499202 CCCCCAATGAGCTATAAGTGCAT 60.499 47.826 0.00 0.00 0.00 3.96
222 225 4.263462 CCCCCAATGAGCTATAAGTGCATA 60.263 45.833 0.00 0.00 0.00 3.14
223 226 5.503927 CCCCAATGAGCTATAAGTGCATAT 58.496 41.667 0.00 0.00 0.00 1.78
224 227 6.352996 CCCCCAATGAGCTATAAGTGCATATA 60.353 42.308 0.00 0.00 0.00 0.86
225 228 6.765036 CCCCAATGAGCTATAAGTGCATATAG 59.235 42.308 9.20 9.20 38.40 1.31
226 229 7.365028 CCCCAATGAGCTATAAGTGCATATAGA 60.365 40.741 15.54 0.00 37.85 1.98
227 230 8.043113 CCCAATGAGCTATAAGTGCATATAGAA 58.957 37.037 15.54 3.96 37.85 2.10
228 231 9.440773 CCAATGAGCTATAAGTGCATATAGAAA 57.559 33.333 15.54 3.68 37.85 2.52
239 242 8.910351 AAGTGCATATAGAAATTAAGGAGACC 57.090 34.615 0.00 0.00 0.00 3.85
240 243 8.034313 AGTGCATATAGAAATTAAGGAGACCA 57.966 34.615 0.00 0.00 0.00 4.02
241 244 8.664079 AGTGCATATAGAAATTAAGGAGACCAT 58.336 33.333 0.00 0.00 0.00 3.55
242 245 8.725148 GTGCATATAGAAATTAAGGAGACCATG 58.275 37.037 0.00 0.00 0.00 3.66
243 246 8.439971 TGCATATAGAAATTAAGGAGACCATGT 58.560 33.333 0.00 0.00 0.00 3.21
244 247 8.725148 GCATATAGAAATTAAGGAGACCATGTG 58.275 37.037 0.00 0.00 0.00 3.21
245 248 9.784531 CATATAGAAATTAAGGAGACCATGTGT 57.215 33.333 0.00 0.00 0.00 3.72
246 249 9.784531 ATATAGAAATTAAGGAGACCATGTGTG 57.215 33.333 0.00 0.00 0.00 3.82
247 250 5.880901 AGAAATTAAGGAGACCATGTGTGT 58.119 37.500 0.00 0.00 0.00 3.72
248 251 7.016153 AGAAATTAAGGAGACCATGTGTGTA 57.984 36.000 0.00 0.00 0.00 2.90
249 252 7.458397 AGAAATTAAGGAGACCATGTGTGTAA 58.542 34.615 0.00 0.00 0.00 2.41
250 253 8.109634 AGAAATTAAGGAGACCATGTGTGTAAT 58.890 33.333 0.00 0.00 0.00 1.89
251 254 7.630242 AATTAAGGAGACCATGTGTGTAATG 57.370 36.000 0.00 0.00 0.00 1.90
252 255 4.640771 AAGGAGACCATGTGTGTAATGT 57.359 40.909 0.00 0.00 0.00 2.71
253 256 4.640771 AGGAGACCATGTGTGTAATGTT 57.359 40.909 0.00 0.00 0.00 2.71
254 257 5.755409 AGGAGACCATGTGTGTAATGTTA 57.245 39.130 0.00 0.00 0.00 2.41
255 258 6.313519 AGGAGACCATGTGTGTAATGTTAT 57.686 37.500 0.00 0.00 0.00 1.89
256 259 6.721318 AGGAGACCATGTGTGTAATGTTATT 58.279 36.000 0.00 0.00 0.00 1.40
257 260 6.599244 AGGAGACCATGTGTGTAATGTTATTG 59.401 38.462 0.00 0.00 0.00 1.90
258 261 6.597672 GGAGACCATGTGTGTAATGTTATTGA 59.402 38.462 0.00 0.00 0.00 2.57
259 262 7.283127 GGAGACCATGTGTGTAATGTTATTGAT 59.717 37.037 0.00 0.00 0.00 2.57
260 263 8.213518 AGACCATGTGTGTAATGTTATTGATC 57.786 34.615 0.00 0.00 0.00 2.92
261 264 8.049117 AGACCATGTGTGTAATGTTATTGATCT 58.951 33.333 0.00 0.00 0.00 2.75
262 265 8.579850 ACCATGTGTGTAATGTTATTGATCTT 57.420 30.769 0.00 0.00 0.00 2.40
263 266 8.461222 ACCATGTGTGTAATGTTATTGATCTTG 58.539 33.333 0.00 0.00 0.00 3.02
264 267 8.676401 CCATGTGTGTAATGTTATTGATCTTGA 58.324 33.333 0.00 0.00 0.00 3.02
275 278 9.671279 ATGTTATTGATCTTGATTACTGTGTGA 57.329 29.630 0.00 0.00 0.00 3.58
276 279 9.671279 TGTTATTGATCTTGATTACTGTGTGAT 57.329 29.630 0.00 0.00 0.00 3.06
277 280 9.926751 GTTATTGATCTTGATTACTGTGTGATG 57.073 33.333 0.00 0.00 0.00 3.07
278 281 9.889128 TTATTGATCTTGATTACTGTGTGATGA 57.111 29.630 0.00 0.00 0.00 2.92
279 282 7.838771 TTGATCTTGATTACTGTGTGATGAG 57.161 36.000 0.00 0.00 0.00 2.90
280 283 7.174107 TGATCTTGATTACTGTGTGATGAGA 57.826 36.000 0.00 0.00 0.00 3.27
281 284 7.263496 TGATCTTGATTACTGTGTGATGAGAG 58.737 38.462 0.00 0.00 0.00 3.20
282 285 6.840780 TCTTGATTACTGTGTGATGAGAGA 57.159 37.500 0.00 0.00 0.00 3.10
283 286 7.232118 TCTTGATTACTGTGTGATGAGAGAA 57.768 36.000 0.00 0.00 0.00 2.87
284 287 7.670364 TCTTGATTACTGTGTGATGAGAGAAA 58.330 34.615 0.00 0.00 0.00 2.52
285 288 8.150296 TCTTGATTACTGTGTGATGAGAGAAAA 58.850 33.333 0.00 0.00 0.00 2.29
286 289 8.675705 TTGATTACTGTGTGATGAGAGAAAAA 57.324 30.769 0.00 0.00 0.00 1.94
287 290 8.853077 TGATTACTGTGTGATGAGAGAAAAAT 57.147 30.769 0.00 0.00 0.00 1.82
288 291 9.942850 TGATTACTGTGTGATGAGAGAAAAATA 57.057 29.630 0.00 0.00 0.00 1.40
291 294 9.725019 TTACTGTGTGATGAGAGAAAAATATGT 57.275 29.630 0.00 0.00 0.00 2.29
292 295 8.627208 ACTGTGTGATGAGAGAAAAATATGTT 57.373 30.769 0.00 0.00 0.00 2.71
293 296 9.071276 ACTGTGTGATGAGAGAAAAATATGTTT 57.929 29.630 0.00 0.00 0.00 2.83
294 297 9.903682 CTGTGTGATGAGAGAAAAATATGTTTT 57.096 29.630 0.00 0.00 39.15 2.43
328 331 8.621532 AAGTGCATTGAGAAAATAGAAGTACA 57.378 30.769 0.00 0.00 0.00 2.90
329 332 8.034058 AGTGCATTGAGAAAATAGAAGTACAC 57.966 34.615 0.00 0.00 0.00 2.90
330 333 7.880195 AGTGCATTGAGAAAATAGAAGTACACT 59.120 33.333 0.00 0.00 0.00 3.55
331 334 8.171840 GTGCATTGAGAAAATAGAAGTACACTC 58.828 37.037 0.00 0.00 0.00 3.51
332 335 8.097038 TGCATTGAGAAAATAGAAGTACACTCT 58.903 33.333 0.00 0.00 0.00 3.24
333 336 8.940952 GCATTGAGAAAATAGAAGTACACTCTT 58.059 33.333 3.13 0.00 0.00 2.85
337 340 9.832445 TGAGAAAATAGAAGTACACTCTTTTGT 57.168 29.630 15.28 12.84 0.00 2.83
339 342 9.832445 AGAAAATAGAAGTACACTCTTTTGTGA 57.168 29.630 15.28 0.00 40.12 3.58
370 373 9.890629 ATCTTAAACTGAAATATACACTCTGCA 57.109 29.630 0.00 0.00 0.00 4.41
371 374 9.890629 TCTTAAACTGAAATATACACTCTGCAT 57.109 29.630 0.00 0.00 0.00 3.96
373 376 6.834959 AACTGAAATATACACTCTGCATCG 57.165 37.500 0.00 0.00 0.00 3.84
374 377 6.149129 ACTGAAATATACACTCTGCATCGA 57.851 37.500 0.00 0.00 0.00 3.59
375 378 6.573434 ACTGAAATATACACTCTGCATCGAA 58.427 36.000 0.00 0.00 0.00 3.71
376 379 6.477033 ACTGAAATATACACTCTGCATCGAAC 59.523 38.462 0.00 0.00 0.00 3.95
377 380 6.337356 TGAAATATACACTCTGCATCGAACA 58.663 36.000 0.00 0.00 0.00 3.18
378 381 6.816140 TGAAATATACACTCTGCATCGAACAA 59.184 34.615 0.00 0.00 0.00 2.83
379 382 7.333174 TGAAATATACACTCTGCATCGAACAAA 59.667 33.333 0.00 0.00 0.00 2.83
380 383 6.834959 ATATACACTCTGCATCGAACAAAG 57.165 37.500 0.00 0.00 0.00 2.77
381 384 2.146342 ACACTCTGCATCGAACAAAGG 58.854 47.619 0.00 0.00 0.00 3.11
382 385 2.224281 ACACTCTGCATCGAACAAAGGA 60.224 45.455 0.00 0.00 0.00 3.36
383 386 2.807967 CACTCTGCATCGAACAAAGGAA 59.192 45.455 0.00 0.00 0.00 3.36
384 387 3.070018 ACTCTGCATCGAACAAAGGAAG 58.930 45.455 0.00 0.00 0.00 3.46
399 402 7.329588 ACAAAGGAAGTAAGTGTGTTTAAGG 57.670 36.000 0.00 0.00 0.00 2.69
422 425 4.762251 GGCTACAACCCCATATGAAGAATC 59.238 45.833 3.65 0.00 0.00 2.52
425 428 5.472301 ACAACCCCATATGAAGAATCCTT 57.528 39.130 3.65 0.00 34.81 3.36
426 429 6.590656 ACAACCCCATATGAAGAATCCTTA 57.409 37.500 3.65 0.00 31.62 2.69
427 430 6.365520 ACAACCCCATATGAAGAATCCTTAC 58.634 40.000 3.65 0.00 31.62 2.34
428 431 6.069088 ACAACCCCATATGAAGAATCCTTACA 60.069 38.462 3.65 0.00 31.62 2.41
461 977 4.438200 CCCGCAATCAAACAACCATACTAC 60.438 45.833 0.00 0.00 0.00 2.73
465 981 5.648092 GCAATCAAACAACCATACTACTCCT 59.352 40.000 0.00 0.00 0.00 3.69
466 982 6.821665 GCAATCAAACAACCATACTACTCCTA 59.178 38.462 0.00 0.00 0.00 2.94
467 983 7.011482 GCAATCAAACAACCATACTACTCCTAG 59.989 40.741 0.00 0.00 0.00 3.02
468 984 7.735326 ATCAAACAACCATACTACTCCTAGT 57.265 36.000 0.00 0.00 37.04 2.57
469 985 7.166691 TCAAACAACCATACTACTCCTAGTC 57.833 40.000 0.00 0.00 34.79 2.59
470 986 6.154021 TCAAACAACCATACTACTCCTAGTCC 59.846 42.308 0.00 0.00 34.79 3.85
512 1028 0.040058 TGCCATGCCACTTCATTCCT 59.960 50.000 0.00 0.00 0.00 3.36
513 1029 1.284491 TGCCATGCCACTTCATTCCTA 59.716 47.619 0.00 0.00 0.00 2.94
514 1030 1.678101 GCCATGCCACTTCATTCCTAC 59.322 52.381 0.00 0.00 0.00 3.18
515 1031 2.684927 GCCATGCCACTTCATTCCTACT 60.685 50.000 0.00 0.00 0.00 2.57
516 1032 3.209410 CCATGCCACTTCATTCCTACTC 58.791 50.000 0.00 0.00 0.00 2.59
517 1033 3.209410 CATGCCACTTCATTCCTACTCC 58.791 50.000 0.00 0.00 0.00 3.85
518 1034 1.559682 TGCCACTTCATTCCTACTCCC 59.440 52.381 0.00 0.00 0.00 4.30
519 1035 1.840635 GCCACTTCATTCCTACTCCCT 59.159 52.381 0.00 0.00 0.00 4.20
520 1036 2.158885 GCCACTTCATTCCTACTCCCTC 60.159 54.545 0.00 0.00 0.00 4.30
521 1037 2.436173 CCACTTCATTCCTACTCCCTCC 59.564 54.545 0.00 0.00 0.00 4.30
522 1038 3.379452 CACTTCATTCCTACTCCCTCCT 58.621 50.000 0.00 0.00 0.00 3.69
523 1039 3.777522 CACTTCATTCCTACTCCCTCCTT 59.222 47.826 0.00 0.00 0.00 3.36
524 1040 4.034410 ACTTCATTCCTACTCCCTCCTTC 58.966 47.826 0.00 0.00 0.00 3.46
525 1041 4.265078 ACTTCATTCCTACTCCCTCCTTCT 60.265 45.833 0.00 0.00 0.00 2.85
526 1042 5.043281 ACTTCATTCCTACTCCCTCCTTCTA 60.043 44.000 0.00 0.00 0.00 2.10
527 1043 5.688220 TCATTCCTACTCCCTCCTTCTAT 57.312 43.478 0.00 0.00 0.00 1.98
528 1044 6.044411 TCATTCCTACTCCCTCCTTCTATT 57.956 41.667 0.00 0.00 0.00 1.73
529 1045 6.453476 TCATTCCTACTCCCTCCTTCTATTT 58.547 40.000 0.00 0.00 0.00 1.40
530 1046 7.601942 TCATTCCTACTCCCTCCTTCTATTTA 58.398 38.462 0.00 0.00 0.00 1.40
531 1047 8.242325 TCATTCCTACTCCCTCCTTCTATTTAT 58.758 37.037 0.00 0.00 0.00 1.40
532 1048 9.548631 CATTCCTACTCCCTCCTTCTATTTATA 57.451 37.037 0.00 0.00 0.00 0.98
536 1052 9.649316 CCTACTCCCTCCTTCTATTTATATAGG 57.351 40.741 1.01 0.00 35.45 2.57
537 1053 9.649316 CTACTCCCTCCTTCTATTTATATAGGG 57.351 40.741 0.00 0.00 43.23 3.53
538 1054 6.904093 ACTCCCTCCTTCTATTTATATAGGGC 59.096 42.308 0.00 0.00 41.88 5.19
539 1055 6.210522 TCCCTCCTTCTATTTATATAGGGCC 58.789 44.000 0.00 0.00 41.88 5.80
540 1056 6.008841 TCCCTCCTTCTATTTATATAGGGCCT 60.009 42.308 12.58 12.58 41.88 5.19
541 1057 7.189579 TCCCTCCTTCTATTTATATAGGGCCTA 59.810 40.741 17.16 17.16 41.88 3.93
542 1058 7.849904 CCCTCCTTCTATTTATATAGGGCCTAA 59.150 40.741 18.91 7.61 36.30 2.69
543 1059 9.453830 CCTCCTTCTATTTATATAGGGCCTAAT 57.546 37.037 18.91 14.19 35.45 1.73
545 1061 8.714906 TCCTTCTATTTATATAGGGCCTAATGC 58.285 37.037 18.91 0.00 35.45 3.56
546 1062 8.494433 CCTTCTATTTATATAGGGCCTAATGCA 58.506 37.037 18.91 3.66 36.04 3.96
638 1154 7.839680 ATTATTGGAATCCCCTTTCACATAC 57.160 36.000 0.00 0.00 35.38 2.39
639 1155 3.275617 TGGAATCCCCTTTCACATACG 57.724 47.619 0.00 0.00 35.38 3.06
640 1156 2.841266 TGGAATCCCCTTTCACATACGA 59.159 45.455 0.00 0.00 35.38 3.43
641 1157 3.264706 TGGAATCCCCTTTCACATACGAA 59.735 43.478 0.00 0.00 35.38 3.85
642 1158 4.080015 TGGAATCCCCTTTCACATACGAAT 60.080 41.667 0.00 0.00 35.38 3.34
643 1159 4.887655 GGAATCCCCTTTCACATACGAATT 59.112 41.667 0.00 0.00 0.00 2.17
644 1160 5.359860 GGAATCCCCTTTCACATACGAATTT 59.640 40.000 0.00 0.00 0.00 1.82
645 1161 5.835113 ATCCCCTTTCACATACGAATTTG 57.165 39.130 0.00 0.00 0.00 2.32
646 1162 4.912586 TCCCCTTTCACATACGAATTTGA 58.087 39.130 0.00 0.00 0.00 2.69
647 1163 4.698304 TCCCCTTTCACATACGAATTTGAC 59.302 41.667 0.00 0.00 0.00 3.18
648 1164 4.436852 CCCCTTTCACATACGAATTTGACG 60.437 45.833 0.00 0.00 0.00 4.35
649 1165 4.436852 CCCTTTCACATACGAATTTGACGG 60.437 45.833 0.00 0.00 34.93 4.79
650 1166 4.153475 CCTTTCACATACGAATTTGACGGT 59.847 41.667 0.00 0.00 34.93 4.83
651 1167 5.349270 CCTTTCACATACGAATTTGACGGTA 59.651 40.000 0.00 0.00 34.93 4.02
652 1168 6.036735 CCTTTCACATACGAATTTGACGGTAT 59.963 38.462 0.00 0.00 34.93 2.73
653 1169 5.959652 TCACATACGAATTTGACGGTATG 57.040 39.130 0.00 8.12 34.47 2.39
654 1170 5.412640 TCACATACGAATTTGACGGTATGT 58.587 37.500 9.23 9.23 37.85 2.29
655 1171 5.870433 TCACATACGAATTTGACGGTATGTT 59.130 36.000 11.69 0.00 36.69 2.71
656 1172 6.369340 TCACATACGAATTTGACGGTATGTTT 59.631 34.615 11.69 0.00 36.69 2.83
657 1173 7.018826 CACATACGAATTTGACGGTATGTTTT 58.981 34.615 11.69 0.00 36.69 2.43
658 1174 7.007009 CACATACGAATTTGACGGTATGTTTTG 59.993 37.037 11.69 0.57 36.69 2.44
659 1175 5.427036 ACGAATTTGACGGTATGTTTTGT 57.573 34.783 0.00 0.00 34.93 2.83
660 1176 5.209240 ACGAATTTGACGGTATGTTTTGTG 58.791 37.500 0.00 0.00 34.93 3.33
661 1177 5.209240 CGAATTTGACGGTATGTTTTGTGT 58.791 37.500 0.00 0.00 0.00 3.72
662 1178 6.018098 ACGAATTTGACGGTATGTTTTGTGTA 60.018 34.615 0.00 0.00 34.93 2.90
663 1179 6.851837 CGAATTTGACGGTATGTTTTGTGTAA 59.148 34.615 0.00 0.00 0.00 2.41
664 1180 7.149256 CGAATTTGACGGTATGTTTTGTGTAAC 60.149 37.037 0.00 0.00 37.35 2.50
665 1181 6.680874 TTTGACGGTATGTTTTGTGTAACT 57.319 33.333 0.00 0.00 38.04 2.24
666 1182 6.680874 TTGACGGTATGTTTTGTGTAACTT 57.319 33.333 0.00 0.00 38.04 2.66
667 1183 6.050454 TGACGGTATGTTTTGTGTAACTTG 57.950 37.500 0.00 0.00 38.04 3.16
668 1184 4.851010 ACGGTATGTTTTGTGTAACTTGC 58.149 39.130 0.00 0.00 38.04 4.01
669 1185 4.335874 ACGGTATGTTTTGTGTAACTTGCA 59.664 37.500 0.00 0.00 38.04 4.08
670 1186 5.009210 ACGGTATGTTTTGTGTAACTTGCAT 59.991 36.000 0.00 0.00 38.04 3.96
671 1187 5.341993 CGGTATGTTTTGTGTAACTTGCATG 59.658 40.000 0.00 0.00 38.04 4.06
672 1188 6.212955 GGTATGTTTTGTGTAACTTGCATGT 58.787 36.000 0.00 0.00 38.04 3.21
673 1189 6.362283 GGTATGTTTTGTGTAACTTGCATGTC 59.638 38.462 5.61 0.00 38.04 3.06
674 1190 5.316327 TGTTTTGTGTAACTTGCATGTCA 57.684 34.783 5.61 0.00 38.04 3.58
675 1191 5.900425 TGTTTTGTGTAACTTGCATGTCAT 58.100 33.333 5.61 0.00 38.04 3.06
676 1192 7.032377 TGTTTTGTGTAACTTGCATGTCATA 57.968 32.000 5.61 0.00 38.04 2.15
677 1193 7.656412 TGTTTTGTGTAACTTGCATGTCATAT 58.344 30.769 5.61 0.00 38.04 1.78
678 1194 8.787852 TGTTTTGTGTAACTTGCATGTCATATA 58.212 29.630 5.61 0.00 38.04 0.86
679 1195 9.787532 GTTTTGTGTAACTTGCATGTCATATAT 57.212 29.630 5.61 0.00 38.04 0.86
688 1204 8.859236 ACTTGCATGTCATATATTATTGCTCT 57.141 30.769 0.00 0.00 0.00 4.09
689 1205 9.948964 ACTTGCATGTCATATATTATTGCTCTA 57.051 29.630 0.00 0.00 0.00 2.43
692 1208 9.723601 TGCATGTCATATATTATTGCTCTAACA 57.276 29.630 0.00 0.00 0.00 2.41
707 1223 9.643693 ATTGCTCTAACATTTAGTCAAAATTGG 57.356 29.630 0.00 0.00 35.54 3.16
708 1224 7.090173 TGCTCTAACATTTAGTCAAAATTGGC 58.910 34.615 0.00 0.00 35.54 4.52
709 1225 6.531594 GCTCTAACATTTAGTCAAAATTGGCC 59.468 38.462 0.00 0.00 35.54 5.36
710 1226 7.577616 GCTCTAACATTTAGTCAAAATTGGCCT 60.578 37.037 3.32 0.00 35.54 5.19
711 1227 7.826690 TCTAACATTTAGTCAAAATTGGCCTC 58.173 34.615 3.32 0.00 35.54 4.70
712 1228 5.059404 ACATTTAGTCAAAATTGGCCTCG 57.941 39.130 3.32 0.00 35.54 4.63
713 1229 4.764823 ACATTTAGTCAAAATTGGCCTCGA 59.235 37.500 3.32 0.00 35.54 4.04
714 1230 5.242838 ACATTTAGTCAAAATTGGCCTCGAA 59.757 36.000 3.32 0.00 35.54 3.71
715 1231 5.776173 TTTAGTCAAAATTGGCCTCGAAA 57.224 34.783 3.32 0.00 31.90 3.46
716 1232 5.776173 TTAGTCAAAATTGGCCTCGAAAA 57.224 34.783 3.32 0.00 31.90 2.29
717 1233 4.664150 AGTCAAAATTGGCCTCGAAAAA 57.336 36.364 3.32 0.00 31.90 1.94
718 1234 4.368315 AGTCAAAATTGGCCTCGAAAAAC 58.632 39.130 3.32 0.00 31.90 2.43
719 1235 4.116238 GTCAAAATTGGCCTCGAAAAACA 58.884 39.130 3.32 0.00 0.00 2.83
720 1236 4.026062 GTCAAAATTGGCCTCGAAAAACAC 60.026 41.667 3.32 0.00 0.00 3.32
721 1237 3.810310 AAATTGGCCTCGAAAAACACA 57.190 38.095 3.32 0.00 0.00 3.72
722 1238 4.335400 AAATTGGCCTCGAAAAACACAT 57.665 36.364 3.32 0.00 0.00 3.21
723 1239 4.335400 AATTGGCCTCGAAAAACACATT 57.665 36.364 3.32 0.00 0.00 2.71
724 1240 5.461032 AATTGGCCTCGAAAAACACATTA 57.539 34.783 3.32 0.00 0.00 1.90
725 1241 4.920640 TTGGCCTCGAAAAACACATTAA 57.079 36.364 3.32 0.00 0.00 1.40
726 1242 4.497473 TGGCCTCGAAAAACACATTAAG 57.503 40.909 3.32 0.00 0.00 1.85
727 1243 3.242518 GGCCTCGAAAAACACATTAAGC 58.757 45.455 0.00 0.00 0.00 3.09
728 1244 3.242518 GCCTCGAAAAACACATTAAGCC 58.757 45.455 0.00 0.00 0.00 4.35
729 1245 3.833442 CCTCGAAAAACACATTAAGCCC 58.167 45.455 0.00 0.00 0.00 5.19
730 1246 3.506067 CCTCGAAAAACACATTAAGCCCT 59.494 43.478 0.00 0.00 0.00 5.19
731 1247 4.698304 CCTCGAAAAACACATTAAGCCCTA 59.302 41.667 0.00 0.00 0.00 3.53
732 1248 5.357032 CCTCGAAAAACACATTAAGCCCTAT 59.643 40.000 0.00 0.00 0.00 2.57
733 1249 6.540914 CCTCGAAAAACACATTAAGCCCTATA 59.459 38.462 0.00 0.00 0.00 1.31
734 1250 7.228706 CCTCGAAAAACACATTAAGCCCTATAT 59.771 37.037 0.00 0.00 0.00 0.86
735 1251 9.268268 CTCGAAAAACACATTAAGCCCTATATA 57.732 33.333 0.00 0.00 0.00 0.86
736 1252 9.268268 TCGAAAAACACATTAAGCCCTATATAG 57.732 33.333 2.46 2.46 0.00 1.31
737 1253 9.268268 CGAAAAACACATTAAGCCCTATATAGA 57.732 33.333 11.53 0.00 0.00 1.98
740 1256 9.520515 AAAACACATTAAGCCCTATATAGATGG 57.479 33.333 11.53 6.04 0.00 3.51
741 1257 7.814693 ACACATTAAGCCCTATATAGATGGT 57.185 36.000 11.53 4.91 0.00 3.55
742 1258 8.911018 ACACATTAAGCCCTATATAGATGGTA 57.089 34.615 11.53 0.00 0.00 3.25
743 1259 8.982723 ACACATTAAGCCCTATATAGATGGTAG 58.017 37.037 11.53 3.88 0.00 3.18
744 1260 8.424918 CACATTAAGCCCTATATAGATGGTAGG 58.575 40.741 11.53 3.94 35.75 3.18
745 1261 8.352181 ACATTAAGCCCTATATAGATGGTAGGA 58.648 37.037 11.53 0.00 37.73 2.94
746 1262 8.865090 CATTAAGCCCTATATAGATGGTAGGAG 58.135 40.741 11.53 0.00 37.73 3.69
747 1263 5.411103 AGCCCTATATAGATGGTAGGAGG 57.589 47.826 11.53 1.87 37.73 4.30
748 1264 4.171044 AGCCCTATATAGATGGTAGGAGGG 59.829 50.000 11.53 3.52 44.52 4.30
749 1265 4.170251 GCCCTATATAGATGGTAGGAGGGA 59.830 50.000 11.53 0.00 44.48 4.20
750 1266 5.694405 GCCCTATATAGATGGTAGGAGGGAG 60.694 52.000 11.53 0.00 44.48 4.30
751 1267 5.437043 CCCTATATAGATGGTAGGAGGGAGT 59.563 48.000 11.53 0.00 44.48 3.85
752 1268 6.624440 CCCTATATAGATGGTAGGAGGGAGTA 59.376 46.154 11.53 0.00 44.48 2.59
753 1269 7.202242 CCCTATATAGATGGTAGGAGGGAGTAG 60.202 48.148 11.53 0.00 44.48 2.57
770 1286 5.346522 GGAGTAGTATGGTTTACAAGTCCG 58.653 45.833 0.00 0.00 0.00 4.79
839 2464 1.355005 GCCGGCGTTTAATTTGCAAT 58.645 45.000 12.58 0.00 0.00 3.56
845 2471 3.124466 GGCGTTTAATTTGCAATGGAACC 59.876 43.478 0.00 0.00 0.00 3.62
915 2545 4.778534 GTGCTTCACCACTAGTAGTACA 57.221 45.455 1.57 0.00 33.02 2.90
916 2546 5.326200 GTGCTTCACCACTAGTAGTACAT 57.674 43.478 1.57 0.00 33.02 2.29
917 2547 5.721232 GTGCTTCACCACTAGTAGTACATT 58.279 41.667 1.57 0.00 33.02 2.71
918 2548 6.164176 GTGCTTCACCACTAGTAGTACATTT 58.836 40.000 1.57 0.00 33.02 2.32
921 2551 7.172532 TGCTTCACCACTAGTAGTACATTTTTG 59.827 37.037 1.57 0.00 0.00 2.44
923 2553 8.597662 TTCACCACTAGTAGTACATTTTTGTC 57.402 34.615 1.57 0.00 0.00 3.18
1017 2654 2.889678 AGTAGTATAAGTAGGCACGCCC 59.110 50.000 3.95 0.00 36.58 6.13
1018 2655 0.672342 AGTATAAGTAGGCACGCCCG 59.328 55.000 3.95 0.00 39.21 6.13
1162 2800 2.645510 GCTGTTGTGGTCGTCGTCG 61.646 63.158 0.00 0.00 38.55 5.12
1165 2805 4.986587 TTGTGGTCGTCGTCGCCG 62.987 66.667 0.00 0.00 36.55 6.46
1208 2848 5.986135 GCTATGAAGGTAGTCAAGGTATGTG 59.014 44.000 0.00 0.00 0.00 3.21
1523 3169 3.081061 GGAGTTCACCAACACATGCATA 58.919 45.455 0.00 0.00 34.60 3.14
1942 3619 7.537715 TGGTGCTTTCATGTCTATTAACATTG 58.462 34.615 0.00 0.00 37.78 2.82
2292 3971 1.000274 GCATGGAATACCGGATTTGCC 60.000 52.381 9.46 0.00 39.42 4.52
2449 4128 1.162698 ACTGCTACGCGAGACAGTAA 58.837 50.000 23.68 5.48 39.35 2.24
2550 4229 2.513204 CCAGCCCAGTCTGCATCG 60.513 66.667 0.00 0.00 32.87 3.84
2696 4375 1.000955 CTGGCAGACTCGGTTAACAGT 59.999 52.381 9.42 2.96 0.00 3.55
2716 4395 3.704566 AGTATAGGAAATGTCTGGTCGCA 59.295 43.478 0.00 0.00 0.00 5.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 19 4.984146 AGCCCTTAGACATAGGATTTCC 57.016 45.455 0.00 0.00 34.56 3.13
86 89 5.361571 TGTACACTTTTCACCTGACAGAGTA 59.638 40.000 3.32 0.00 0.00 2.59
87 90 3.914426 ACACTTTTCACCTGACAGAGT 57.086 42.857 3.32 0.00 0.00 3.24
88 91 4.693283 TGTACACTTTTCACCTGACAGAG 58.307 43.478 3.32 0.00 0.00 3.35
89 92 4.746535 TGTACACTTTTCACCTGACAGA 57.253 40.909 3.32 0.00 0.00 3.41
90 93 8.251026 TCTATATGTACACTTTTCACCTGACAG 58.749 37.037 0.00 0.00 0.00 3.51
91 94 8.129496 TCTATATGTACACTTTTCACCTGACA 57.871 34.615 0.00 0.00 0.00 3.58
92 95 8.997621 TTCTATATGTACACTTTTCACCTGAC 57.002 34.615 0.00 0.00 0.00 3.51
145 148 9.171877 TGACTTGCACCTTTTTAATTCATTTTT 57.828 25.926 0.00 0.00 0.00 1.94
146 149 8.729805 TGACTTGCACCTTTTTAATTCATTTT 57.270 26.923 0.00 0.00 0.00 1.82
147 150 8.907222 ATGACTTGCACCTTTTTAATTCATTT 57.093 26.923 0.00 0.00 0.00 2.32
148 151 8.149647 TGATGACTTGCACCTTTTTAATTCATT 58.850 29.630 0.00 0.00 0.00 2.57
149 152 7.669427 TGATGACTTGCACCTTTTTAATTCAT 58.331 30.769 0.00 0.00 0.00 2.57
150 153 7.048629 TGATGACTTGCACCTTTTTAATTCA 57.951 32.000 0.00 0.00 0.00 2.57
151 154 8.538409 AATGATGACTTGCACCTTTTTAATTC 57.462 30.769 0.00 0.00 0.00 2.17
152 155 8.907222 AAATGATGACTTGCACCTTTTTAATT 57.093 26.923 0.00 0.00 0.00 1.40
153 156 8.370182 AGAAATGATGACTTGCACCTTTTTAAT 58.630 29.630 0.00 0.00 0.00 1.40
154 157 7.725251 AGAAATGATGACTTGCACCTTTTTAA 58.275 30.769 0.00 0.00 0.00 1.52
155 158 7.231317 AGAGAAATGATGACTTGCACCTTTTTA 59.769 33.333 0.00 0.00 0.00 1.52
156 159 6.041296 AGAGAAATGATGACTTGCACCTTTTT 59.959 34.615 0.00 0.00 0.00 1.94
157 160 5.537674 AGAGAAATGATGACTTGCACCTTTT 59.462 36.000 0.00 0.00 0.00 2.27
158 161 5.075493 AGAGAAATGATGACTTGCACCTTT 58.925 37.500 0.00 0.00 0.00 3.11
159 162 4.660168 AGAGAAATGATGACTTGCACCTT 58.340 39.130 0.00 0.00 0.00 3.50
160 163 4.260170 GAGAGAAATGATGACTTGCACCT 58.740 43.478 0.00 0.00 0.00 4.00
161 164 4.005650 TGAGAGAAATGATGACTTGCACC 58.994 43.478 0.00 0.00 0.00 5.01
162 165 5.585445 AGATGAGAGAAATGATGACTTGCAC 59.415 40.000 0.00 0.00 0.00 4.57
163 166 5.742063 AGATGAGAGAAATGATGACTTGCA 58.258 37.500 0.00 0.00 0.00 4.08
164 167 6.680874 AAGATGAGAGAAATGATGACTTGC 57.319 37.500 0.00 0.00 0.00 4.01
172 175 9.973661 TTGGGTAATTAAAGATGAGAGAAATGA 57.026 29.630 0.00 0.00 0.00 2.57
174 177 9.190317 GGTTGGGTAATTAAAGATGAGAGAAAT 57.810 33.333 0.00 0.00 0.00 2.17
175 178 7.614192 GGGTTGGGTAATTAAAGATGAGAGAAA 59.386 37.037 0.00 0.00 0.00 2.52
176 179 7.116736 GGGTTGGGTAATTAAAGATGAGAGAA 58.883 38.462 0.00 0.00 0.00 2.87
177 180 6.353602 GGGGTTGGGTAATTAAAGATGAGAGA 60.354 42.308 0.00 0.00 0.00 3.10
178 181 5.828328 GGGGTTGGGTAATTAAAGATGAGAG 59.172 44.000 0.00 0.00 0.00 3.20
179 182 5.340528 GGGGGTTGGGTAATTAAAGATGAGA 60.341 44.000 0.00 0.00 0.00 3.27
180 183 4.893524 GGGGGTTGGGTAATTAAAGATGAG 59.106 45.833 0.00 0.00 0.00 2.90
181 184 4.295238 TGGGGGTTGGGTAATTAAAGATGA 59.705 41.667 0.00 0.00 0.00 2.92
182 185 4.615513 TGGGGGTTGGGTAATTAAAGATG 58.384 43.478 0.00 0.00 0.00 2.90
183 186 4.976870 TGGGGGTTGGGTAATTAAAGAT 57.023 40.909 0.00 0.00 0.00 2.40
184 187 4.761591 TTGGGGGTTGGGTAATTAAAGA 57.238 40.909 0.00 0.00 0.00 2.52
185 188 5.026790 TCATTGGGGGTTGGGTAATTAAAG 58.973 41.667 0.00 0.00 0.00 1.85
186 189 5.024803 TCATTGGGGGTTGGGTAATTAAA 57.975 39.130 0.00 0.00 0.00 1.52
187 190 4.615513 CTCATTGGGGGTTGGGTAATTAA 58.384 43.478 0.00 0.00 0.00 1.40
188 191 3.628769 GCTCATTGGGGGTTGGGTAATTA 60.629 47.826 0.00 0.00 0.00 1.40
189 192 2.892301 GCTCATTGGGGGTTGGGTAATT 60.892 50.000 0.00 0.00 0.00 1.40
190 193 1.342975 GCTCATTGGGGGTTGGGTAAT 60.343 52.381 0.00 0.00 0.00 1.89
191 194 0.040499 GCTCATTGGGGGTTGGGTAA 59.960 55.000 0.00 0.00 0.00 2.85
192 195 0.849094 AGCTCATTGGGGGTTGGGTA 60.849 55.000 0.00 0.00 0.00 3.69
193 196 0.849094 TAGCTCATTGGGGGTTGGGT 60.849 55.000 0.00 0.00 0.00 4.51
194 197 0.557729 ATAGCTCATTGGGGGTTGGG 59.442 55.000 0.00 0.00 0.00 4.12
195 198 3.117512 ACTTATAGCTCATTGGGGGTTGG 60.118 47.826 0.00 0.00 0.00 3.77
196 199 3.885297 CACTTATAGCTCATTGGGGGTTG 59.115 47.826 0.00 0.00 0.00 3.77
197 200 3.688414 GCACTTATAGCTCATTGGGGGTT 60.688 47.826 0.00 0.00 0.00 4.11
198 201 2.158608 GCACTTATAGCTCATTGGGGGT 60.159 50.000 0.00 0.00 0.00 4.95
199 202 2.158623 TGCACTTATAGCTCATTGGGGG 60.159 50.000 0.00 0.00 0.00 5.40
200 203 3.213206 TGCACTTATAGCTCATTGGGG 57.787 47.619 0.00 0.00 0.00 4.96
201 204 7.559486 TCTATATGCACTTATAGCTCATTGGG 58.441 38.462 8.82 0.00 33.83 4.12
202 205 9.440773 TTTCTATATGCACTTATAGCTCATTGG 57.559 33.333 8.82 0.00 33.83 3.16
213 216 9.998106 GGTCTCCTTAATTTCTATATGCACTTA 57.002 33.333 0.00 0.00 0.00 2.24
214 217 8.494433 TGGTCTCCTTAATTTCTATATGCACTT 58.506 33.333 0.00 0.00 0.00 3.16
215 218 8.034313 TGGTCTCCTTAATTTCTATATGCACT 57.966 34.615 0.00 0.00 0.00 4.40
216 219 8.725148 CATGGTCTCCTTAATTTCTATATGCAC 58.275 37.037 0.00 0.00 0.00 4.57
217 220 8.439971 ACATGGTCTCCTTAATTTCTATATGCA 58.560 33.333 0.00 0.00 0.00 3.96
218 221 8.725148 CACATGGTCTCCTTAATTTCTATATGC 58.275 37.037 0.00 0.00 0.00 3.14
219 222 9.784531 ACACATGGTCTCCTTAATTTCTATATG 57.215 33.333 0.00 0.00 0.00 1.78
220 223 9.784531 CACACATGGTCTCCTTAATTTCTATAT 57.215 33.333 0.00 0.00 0.00 0.86
221 224 8.768397 ACACACATGGTCTCCTTAATTTCTATA 58.232 33.333 0.00 0.00 0.00 1.31
222 225 7.633789 ACACACATGGTCTCCTTAATTTCTAT 58.366 34.615 0.00 0.00 0.00 1.98
223 226 7.016153 ACACACATGGTCTCCTTAATTTCTA 57.984 36.000 0.00 0.00 0.00 2.10
224 227 5.880901 ACACACATGGTCTCCTTAATTTCT 58.119 37.500 0.00 0.00 0.00 2.52
225 228 7.681939 TTACACACATGGTCTCCTTAATTTC 57.318 36.000 0.00 0.00 0.00 2.17
226 229 7.669722 ACATTACACACATGGTCTCCTTAATTT 59.330 33.333 0.00 0.00 0.00 1.82
227 230 7.175104 ACATTACACACATGGTCTCCTTAATT 58.825 34.615 0.00 0.00 0.00 1.40
228 231 6.721318 ACATTACACACATGGTCTCCTTAAT 58.279 36.000 0.00 0.00 0.00 1.40
229 232 6.121776 ACATTACACACATGGTCTCCTTAA 57.878 37.500 0.00 0.00 0.00 1.85
230 233 5.755409 ACATTACACACATGGTCTCCTTA 57.245 39.130 0.00 0.00 0.00 2.69
231 234 4.640771 ACATTACACACATGGTCTCCTT 57.359 40.909 0.00 0.00 0.00 3.36
232 235 4.640771 AACATTACACACATGGTCTCCT 57.359 40.909 0.00 0.00 0.00 3.69
233 236 6.597672 TCAATAACATTACACACATGGTCTCC 59.402 38.462 0.00 0.00 0.00 3.71
234 237 7.609760 TCAATAACATTACACACATGGTCTC 57.390 36.000 0.00 0.00 0.00 3.36
235 238 8.049117 AGATCAATAACATTACACACATGGTCT 58.951 33.333 0.00 0.00 0.00 3.85
236 239 8.213518 AGATCAATAACATTACACACATGGTC 57.786 34.615 0.00 0.00 0.00 4.02
237 240 8.461222 CAAGATCAATAACATTACACACATGGT 58.539 33.333 0.00 0.00 0.00 3.55
238 241 8.676401 TCAAGATCAATAACATTACACACATGG 58.324 33.333 0.00 0.00 0.00 3.66
249 252 9.671279 TCACACAGTAATCAAGATCAATAACAT 57.329 29.630 0.00 0.00 0.00 2.71
250 253 9.671279 ATCACACAGTAATCAAGATCAATAACA 57.329 29.630 0.00 0.00 0.00 2.41
251 254 9.926751 CATCACACAGTAATCAAGATCAATAAC 57.073 33.333 0.00 0.00 0.00 1.89
252 255 9.889128 TCATCACACAGTAATCAAGATCAATAA 57.111 29.630 0.00 0.00 0.00 1.40
253 256 9.538508 CTCATCACACAGTAATCAAGATCAATA 57.461 33.333 0.00 0.00 0.00 1.90
254 257 8.262933 TCTCATCACACAGTAATCAAGATCAAT 58.737 33.333 0.00 0.00 0.00 2.57
255 258 7.614494 TCTCATCACACAGTAATCAAGATCAA 58.386 34.615 0.00 0.00 0.00 2.57
256 259 7.123247 TCTCTCATCACACAGTAATCAAGATCA 59.877 37.037 0.00 0.00 0.00 2.92
257 260 7.487484 TCTCTCATCACACAGTAATCAAGATC 58.513 38.462 0.00 0.00 0.00 2.75
258 261 7.415592 TCTCTCATCACACAGTAATCAAGAT 57.584 36.000 0.00 0.00 0.00 2.40
259 262 6.840780 TCTCTCATCACACAGTAATCAAGA 57.159 37.500 0.00 0.00 0.00 3.02
260 263 7.895975 TTTCTCTCATCACACAGTAATCAAG 57.104 36.000 0.00 0.00 0.00 3.02
261 264 8.675705 TTTTTCTCTCATCACACAGTAATCAA 57.324 30.769 0.00 0.00 0.00 2.57
262 265 8.853077 ATTTTTCTCTCATCACACAGTAATCA 57.147 30.769 0.00 0.00 0.00 2.57
265 268 9.725019 ACATATTTTTCTCTCATCACACAGTAA 57.275 29.630 0.00 0.00 0.00 2.24
266 269 9.725019 AACATATTTTTCTCTCATCACACAGTA 57.275 29.630 0.00 0.00 0.00 2.74
267 270 8.627208 AACATATTTTTCTCTCATCACACAGT 57.373 30.769 0.00 0.00 0.00 3.55
268 271 9.903682 AAAACATATTTTTCTCTCATCACACAG 57.096 29.630 0.00 0.00 34.19 3.66
302 305 9.066892 TGTACTTCTATTTTCTCAATGCACTTT 57.933 29.630 0.00 0.00 0.00 2.66
303 306 8.507249 GTGTACTTCTATTTTCTCAATGCACTT 58.493 33.333 0.00 0.00 0.00 3.16
304 307 7.880195 AGTGTACTTCTATTTTCTCAATGCACT 59.120 33.333 0.00 0.00 0.00 4.40
305 308 8.034058 AGTGTACTTCTATTTTCTCAATGCAC 57.966 34.615 0.00 0.00 0.00 4.57
306 309 8.097038 AGAGTGTACTTCTATTTTCTCAATGCA 58.903 33.333 0.00 0.00 0.00 3.96
307 310 8.485976 AGAGTGTACTTCTATTTTCTCAATGC 57.514 34.615 0.00 0.00 0.00 3.56
311 314 9.832445 ACAAAAGAGTGTACTTCTATTTTCTCA 57.168 29.630 15.47 0.00 35.22 3.27
313 316 9.832445 TCACAAAAGAGTGTACTTCTATTTTCT 57.168 29.630 15.47 7.00 40.37 2.52
344 347 9.890629 TGCAGAGTGTATATTTCAGTTTAAGAT 57.109 29.630 0.00 0.00 0.00 2.40
345 348 9.890629 ATGCAGAGTGTATATTTCAGTTTAAGA 57.109 29.630 0.00 0.00 0.00 2.10
347 350 8.817100 CGATGCAGAGTGTATATTTCAGTTTAA 58.183 33.333 0.00 0.00 0.00 1.52
348 351 8.194769 TCGATGCAGAGTGTATATTTCAGTTTA 58.805 33.333 0.00 0.00 0.00 2.01
349 352 7.041721 TCGATGCAGAGTGTATATTTCAGTTT 58.958 34.615 0.00 0.00 0.00 2.66
350 353 6.573434 TCGATGCAGAGTGTATATTTCAGTT 58.427 36.000 0.00 0.00 0.00 3.16
351 354 6.149129 TCGATGCAGAGTGTATATTTCAGT 57.851 37.500 0.00 0.00 0.00 3.41
352 355 6.476706 TGTTCGATGCAGAGTGTATATTTCAG 59.523 38.462 0.00 0.00 0.00 3.02
353 356 6.337356 TGTTCGATGCAGAGTGTATATTTCA 58.663 36.000 0.00 0.00 0.00 2.69
354 357 6.828502 TGTTCGATGCAGAGTGTATATTTC 57.171 37.500 0.00 0.00 0.00 2.17
355 358 7.201644 CCTTTGTTCGATGCAGAGTGTATATTT 60.202 37.037 0.00 0.00 0.00 1.40
356 359 6.258727 CCTTTGTTCGATGCAGAGTGTATATT 59.741 38.462 0.00 0.00 0.00 1.28
357 360 5.755375 CCTTTGTTCGATGCAGAGTGTATAT 59.245 40.000 0.00 0.00 0.00 0.86
358 361 5.105513 TCCTTTGTTCGATGCAGAGTGTATA 60.106 40.000 0.00 0.00 0.00 1.47
359 362 3.935203 CCTTTGTTCGATGCAGAGTGTAT 59.065 43.478 0.00 0.00 0.00 2.29
360 363 3.006430 TCCTTTGTTCGATGCAGAGTGTA 59.994 43.478 0.00 0.00 0.00 2.90
361 364 2.146342 CCTTTGTTCGATGCAGAGTGT 58.854 47.619 0.00 0.00 0.00 3.55
362 365 2.416747 TCCTTTGTTCGATGCAGAGTG 58.583 47.619 0.00 0.00 0.00 3.51
363 366 2.839486 TCCTTTGTTCGATGCAGAGT 57.161 45.000 0.00 0.00 0.00 3.24
364 367 3.070018 ACTTCCTTTGTTCGATGCAGAG 58.930 45.455 0.00 0.00 0.00 3.35
365 368 3.126001 ACTTCCTTTGTTCGATGCAGA 57.874 42.857 0.00 0.00 0.00 4.26
366 369 4.452455 ACTTACTTCCTTTGTTCGATGCAG 59.548 41.667 0.00 0.00 0.00 4.41
367 370 4.213270 CACTTACTTCCTTTGTTCGATGCA 59.787 41.667 0.00 0.00 0.00 3.96
368 371 4.213482 ACACTTACTTCCTTTGTTCGATGC 59.787 41.667 0.00 0.00 0.00 3.91
369 372 5.236478 ACACACTTACTTCCTTTGTTCGATG 59.764 40.000 0.00 0.00 0.00 3.84
370 373 5.365619 ACACACTTACTTCCTTTGTTCGAT 58.634 37.500 0.00 0.00 0.00 3.59
371 374 4.761975 ACACACTTACTTCCTTTGTTCGA 58.238 39.130 0.00 0.00 0.00 3.71
372 375 5.479716 AACACACTTACTTCCTTTGTTCG 57.520 39.130 0.00 0.00 0.00 3.95
373 376 7.913821 CCTTAAACACACTTACTTCCTTTGTTC 59.086 37.037 0.00 0.00 0.00 3.18
374 377 7.147966 CCCTTAAACACACTTACTTCCTTTGTT 60.148 37.037 0.00 0.00 0.00 2.83
375 378 6.320418 CCCTTAAACACACTTACTTCCTTTGT 59.680 38.462 0.00 0.00 0.00 2.83
376 379 6.734871 GCCCTTAAACACACTTACTTCCTTTG 60.735 42.308 0.00 0.00 0.00 2.77
377 380 5.301045 GCCCTTAAACACACTTACTTCCTTT 59.699 40.000 0.00 0.00 0.00 3.11
378 381 4.825634 GCCCTTAAACACACTTACTTCCTT 59.174 41.667 0.00 0.00 0.00 3.36
379 382 4.104261 AGCCCTTAAACACACTTACTTCCT 59.896 41.667 0.00 0.00 0.00 3.36
380 383 4.395625 AGCCCTTAAACACACTTACTTCC 58.604 43.478 0.00 0.00 0.00 3.46
381 384 5.993441 TGTAGCCCTTAAACACACTTACTTC 59.007 40.000 0.00 0.00 0.00 3.01
382 385 5.932455 TGTAGCCCTTAAACACACTTACTT 58.068 37.500 0.00 0.00 0.00 2.24
383 386 5.556006 TGTAGCCCTTAAACACACTTACT 57.444 39.130 0.00 0.00 0.00 2.24
384 387 5.049198 GGTTGTAGCCCTTAAACACACTTAC 60.049 44.000 0.00 0.00 0.00 2.34
399 402 3.857157 TCTTCATATGGGGTTGTAGCC 57.143 47.619 2.13 0.00 34.31 3.93
441 957 5.648092 AGGAGTAGTATGGTTGTTTGATTGC 59.352 40.000 0.00 0.00 0.00 3.56
461 977 1.258445 ACAACAGGCCGGACTAGGAG 61.258 60.000 11.18 0.00 0.00 3.69
465 981 2.512692 TACTACAACAGGCCGGACTA 57.487 50.000 11.18 0.00 0.00 2.59
466 982 1.636148 TTACTACAACAGGCCGGACT 58.364 50.000 2.12 2.12 0.00 3.85
467 983 2.676342 CAATTACTACAACAGGCCGGAC 59.324 50.000 10.86 0.00 0.00 4.79
468 984 2.568062 TCAATTACTACAACAGGCCGGA 59.432 45.455 10.86 0.00 0.00 5.14
469 985 2.936498 CTCAATTACTACAACAGGCCGG 59.064 50.000 0.00 0.00 0.00 6.13
470 986 2.936498 CCTCAATTACTACAACAGGCCG 59.064 50.000 0.00 0.00 0.00 6.13
512 1028 8.066247 GCCCTATATAAATAGAAGGAGGGAGTA 58.934 40.741 7.83 0.00 44.48 2.59
513 1029 6.904093 GCCCTATATAAATAGAAGGAGGGAGT 59.096 42.308 7.83 0.00 44.48 3.85
514 1030 6.327887 GGCCCTATATAAATAGAAGGAGGGAG 59.672 46.154 7.83 0.00 44.48 4.30
515 1031 6.008841 AGGCCCTATATAAATAGAAGGAGGGA 60.009 42.308 7.83 0.00 44.48 4.20
516 1032 6.213525 AGGCCCTATATAAATAGAAGGAGGG 58.786 44.000 0.00 0.00 44.52 4.30
517 1033 8.855804 TTAGGCCCTATATAAATAGAAGGAGG 57.144 38.462 0.00 0.00 37.84 4.30
519 1035 8.714906 GCATTAGGCCCTATATAAATAGAAGGA 58.285 37.037 0.00 0.00 35.70 3.36
520 1036 8.494433 TGCATTAGGCCCTATATAAATAGAAGG 58.506 37.037 0.00 0.00 43.89 3.46
612 1128 9.533831 GTATGTGAAAGGGGATTCCAATAATAT 57.466 33.333 4.80 0.00 38.24 1.28
613 1129 7.663905 CGTATGTGAAAGGGGATTCCAATAATA 59.336 37.037 4.80 0.00 38.24 0.98
614 1130 6.490040 CGTATGTGAAAGGGGATTCCAATAAT 59.510 38.462 4.80 0.00 38.24 1.28
615 1131 5.825679 CGTATGTGAAAGGGGATTCCAATAA 59.174 40.000 4.80 0.00 38.24 1.40
616 1132 5.131308 TCGTATGTGAAAGGGGATTCCAATA 59.869 40.000 4.80 0.00 38.24 1.90
617 1133 4.080015 TCGTATGTGAAAGGGGATTCCAAT 60.080 41.667 4.80 0.00 38.24 3.16
618 1134 3.264706 TCGTATGTGAAAGGGGATTCCAA 59.735 43.478 4.80 0.00 38.24 3.53
619 1135 2.841266 TCGTATGTGAAAGGGGATTCCA 59.159 45.455 4.80 0.00 38.24 3.53
620 1136 3.553828 TCGTATGTGAAAGGGGATTCC 57.446 47.619 0.00 0.00 0.00 3.01
621 1137 6.094881 TCAAATTCGTATGTGAAAGGGGATTC 59.905 38.462 0.00 0.00 0.00 2.52
622 1138 5.949354 TCAAATTCGTATGTGAAAGGGGATT 59.051 36.000 0.00 0.00 0.00 3.01
623 1139 5.357032 GTCAAATTCGTATGTGAAAGGGGAT 59.643 40.000 0.00 0.00 29.80 3.85
624 1140 4.698304 GTCAAATTCGTATGTGAAAGGGGA 59.302 41.667 0.00 0.00 29.80 4.81
625 1141 4.436852 CGTCAAATTCGTATGTGAAAGGGG 60.437 45.833 0.00 0.00 29.80 4.79
626 1142 4.436852 CCGTCAAATTCGTATGTGAAAGGG 60.437 45.833 8.99 3.26 29.80 3.95
627 1143 4.153475 ACCGTCAAATTCGTATGTGAAAGG 59.847 41.667 13.13 13.13 35.64 3.11
628 1144 5.277601 ACCGTCAAATTCGTATGTGAAAG 57.722 39.130 0.00 0.00 29.80 2.62
629 1145 6.369340 ACATACCGTCAAATTCGTATGTGAAA 59.631 34.615 10.10 0.00 35.96 2.69
630 1146 5.870433 ACATACCGTCAAATTCGTATGTGAA 59.130 36.000 10.10 0.00 35.96 3.18
631 1147 5.412640 ACATACCGTCAAATTCGTATGTGA 58.587 37.500 10.10 0.00 35.96 3.58
632 1148 5.712217 ACATACCGTCAAATTCGTATGTG 57.288 39.130 10.10 0.00 35.96 3.21
633 1149 6.730960 AAACATACCGTCAAATTCGTATGT 57.269 33.333 6.00 6.00 37.25 2.29
634 1150 7.007009 CACAAAACATACCGTCAAATTCGTATG 59.993 37.037 0.00 0.00 33.37 2.39
635 1151 7.018826 CACAAAACATACCGTCAAATTCGTAT 58.981 34.615 0.00 0.00 0.00 3.06
636 1152 6.018098 ACACAAAACATACCGTCAAATTCGTA 60.018 34.615 0.00 0.00 0.00 3.43
637 1153 5.209240 CACAAAACATACCGTCAAATTCGT 58.791 37.500 0.00 0.00 0.00 3.85
638 1154 5.209240 ACACAAAACATACCGTCAAATTCG 58.791 37.500 0.00 0.00 0.00 3.34
639 1155 7.858879 AGTTACACAAAACATACCGTCAAATTC 59.141 33.333 0.00 0.00 0.00 2.17
640 1156 7.708998 AGTTACACAAAACATACCGTCAAATT 58.291 30.769 0.00 0.00 0.00 1.82
641 1157 7.266922 AGTTACACAAAACATACCGTCAAAT 57.733 32.000 0.00 0.00 0.00 2.32
642 1158 6.680874 AGTTACACAAAACATACCGTCAAA 57.319 33.333 0.00 0.00 0.00 2.69
643 1159 6.487960 CAAGTTACACAAAACATACCGTCAA 58.512 36.000 0.00 0.00 0.00 3.18
644 1160 5.504337 GCAAGTTACACAAAACATACCGTCA 60.504 40.000 0.00 0.00 0.00 4.35
645 1161 4.907582 GCAAGTTACACAAAACATACCGTC 59.092 41.667 0.00 0.00 0.00 4.79
646 1162 4.335874 TGCAAGTTACACAAAACATACCGT 59.664 37.500 0.00 0.00 0.00 4.83
647 1163 4.849883 TGCAAGTTACACAAAACATACCG 58.150 39.130 0.00 0.00 0.00 4.02
648 1164 6.212955 ACATGCAAGTTACACAAAACATACC 58.787 36.000 0.00 0.00 0.00 2.73
649 1165 6.915300 TGACATGCAAGTTACACAAAACATAC 59.085 34.615 0.00 0.00 0.00 2.39
650 1166 7.032377 TGACATGCAAGTTACACAAAACATA 57.968 32.000 0.00 0.00 0.00 2.29
651 1167 5.900425 TGACATGCAAGTTACACAAAACAT 58.100 33.333 0.00 0.00 0.00 2.71
652 1168 5.316327 TGACATGCAAGTTACACAAAACA 57.684 34.783 0.00 0.00 0.00 2.83
653 1169 9.787532 ATATATGACATGCAAGTTACACAAAAC 57.212 29.630 0.00 0.00 0.00 2.43
662 1178 9.293404 AGAGCAATAATATATGACATGCAAGTT 57.707 29.630 10.78 0.00 34.89 2.66
663 1179 8.859236 AGAGCAATAATATATGACATGCAAGT 57.141 30.769 10.78 0.00 34.89 3.16
666 1182 9.723601 TGTTAGAGCAATAATATATGACATGCA 57.276 29.630 10.78 0.00 34.89 3.96
681 1197 9.643693 CCAATTTTGACTAAATGTTAGAGCAAT 57.356 29.630 2.11 0.00 36.57 3.56
682 1198 7.598493 GCCAATTTTGACTAAATGTTAGAGCAA 59.402 33.333 2.11 3.81 36.57 3.91
683 1199 7.090173 GCCAATTTTGACTAAATGTTAGAGCA 58.910 34.615 2.11 0.00 36.57 4.26
684 1200 6.531594 GGCCAATTTTGACTAAATGTTAGAGC 59.468 38.462 0.00 0.00 36.57 4.09
685 1201 7.830739 AGGCCAATTTTGACTAAATGTTAGAG 58.169 34.615 5.01 0.00 36.57 2.43
686 1202 7.361713 CGAGGCCAATTTTGACTAAATGTTAGA 60.362 37.037 5.01 0.00 36.57 2.10
687 1203 6.747280 CGAGGCCAATTTTGACTAAATGTTAG 59.253 38.462 5.01 0.00 36.57 2.34
688 1204 6.431543 TCGAGGCCAATTTTGACTAAATGTTA 59.568 34.615 5.01 0.00 36.57 2.41
689 1205 5.242838 TCGAGGCCAATTTTGACTAAATGTT 59.757 36.000 5.01 0.00 36.57 2.71
690 1206 4.764823 TCGAGGCCAATTTTGACTAAATGT 59.235 37.500 5.01 0.00 36.57 2.71
691 1207 5.309323 TCGAGGCCAATTTTGACTAAATG 57.691 39.130 5.01 0.00 36.57 2.32
692 1208 5.975693 TTCGAGGCCAATTTTGACTAAAT 57.024 34.783 5.01 0.00 38.08 1.40
693 1209 5.776173 TTTCGAGGCCAATTTTGACTAAA 57.224 34.783 5.01 0.00 0.00 1.85
694 1210 5.776173 TTTTCGAGGCCAATTTTGACTAA 57.224 34.783 5.01 0.00 0.00 2.24
695 1211 5.067936 TGTTTTTCGAGGCCAATTTTGACTA 59.932 36.000 5.01 0.00 0.00 2.59
696 1212 4.142049 TGTTTTTCGAGGCCAATTTTGACT 60.142 37.500 5.01 0.00 0.00 3.41
697 1213 4.026062 GTGTTTTTCGAGGCCAATTTTGAC 60.026 41.667 5.01 0.00 0.00 3.18
698 1214 4.116238 GTGTTTTTCGAGGCCAATTTTGA 58.884 39.130 5.01 0.00 0.00 2.69
699 1215 3.868077 TGTGTTTTTCGAGGCCAATTTTG 59.132 39.130 5.01 0.00 0.00 2.44
700 1216 4.130286 TGTGTTTTTCGAGGCCAATTTT 57.870 36.364 5.01 0.00 0.00 1.82
701 1217 3.810310 TGTGTTTTTCGAGGCCAATTT 57.190 38.095 5.01 0.00 0.00 1.82
702 1218 4.335400 AATGTGTTTTTCGAGGCCAATT 57.665 36.364 5.01 0.00 0.00 2.32
703 1219 5.461032 TTAATGTGTTTTTCGAGGCCAAT 57.539 34.783 5.01 0.00 0.00 3.16
704 1220 4.794655 GCTTAATGTGTTTTTCGAGGCCAA 60.795 41.667 5.01 0.00 0.00 4.52
705 1221 3.305064 GCTTAATGTGTTTTTCGAGGCCA 60.305 43.478 5.01 0.00 0.00 5.36
706 1222 3.242518 GCTTAATGTGTTTTTCGAGGCC 58.757 45.455 0.00 0.00 0.00 5.19
707 1223 3.242518 GGCTTAATGTGTTTTTCGAGGC 58.757 45.455 0.00 0.00 0.00 4.70
708 1224 3.506067 AGGGCTTAATGTGTTTTTCGAGG 59.494 43.478 0.00 0.00 0.00 4.63
709 1225 4.766404 AGGGCTTAATGTGTTTTTCGAG 57.234 40.909 0.00 0.00 0.00 4.04
710 1226 9.268268 CTATATAGGGCTTAATGTGTTTTTCGA 57.732 33.333 1.40 0.00 0.00 3.71
711 1227 9.268268 TCTATATAGGGCTTAATGTGTTTTTCG 57.732 33.333 9.89 0.00 0.00 3.46
714 1230 9.520515 CCATCTATATAGGGCTTAATGTGTTTT 57.479 33.333 9.89 0.00 0.00 2.43
715 1231 8.669571 ACCATCTATATAGGGCTTAATGTGTTT 58.330 33.333 9.89 0.00 0.00 2.83
716 1232 8.219660 ACCATCTATATAGGGCTTAATGTGTT 57.780 34.615 9.89 0.00 0.00 3.32
717 1233 7.814693 ACCATCTATATAGGGCTTAATGTGT 57.185 36.000 9.89 3.55 0.00 3.72
718 1234 8.424918 CCTACCATCTATATAGGGCTTAATGTG 58.575 40.741 9.89 3.05 33.16 3.21
719 1235 8.352181 TCCTACCATCTATATAGGGCTTAATGT 58.648 37.037 9.89 0.45 36.82 2.71
720 1236 8.783660 TCCTACCATCTATATAGGGCTTAATG 57.216 38.462 9.89 5.15 36.82 1.90
721 1237 8.013667 CCTCCTACCATCTATATAGGGCTTAAT 58.986 40.741 9.89 0.00 36.82 1.40
722 1238 7.363031 CCTCCTACCATCTATATAGGGCTTAA 58.637 42.308 9.89 0.00 36.82 1.85
723 1239 6.125860 CCCTCCTACCATCTATATAGGGCTTA 60.126 46.154 9.89 0.00 36.30 3.09
724 1240 5.342134 CCCTCCTACCATCTATATAGGGCTT 60.342 48.000 9.89 0.00 36.30 4.35
725 1241 4.171044 CCCTCCTACCATCTATATAGGGCT 59.829 50.000 9.89 0.00 36.30 5.19
726 1242 4.170251 TCCCTCCTACCATCTATATAGGGC 59.830 50.000 9.89 0.00 41.88 5.19
727 1243 5.437043 ACTCCCTCCTACCATCTATATAGGG 59.563 48.000 9.89 6.69 43.23 3.53
728 1244 6.599986 ACTCCCTCCTACCATCTATATAGG 57.400 45.833 9.89 0.00 37.42 2.57
729 1245 8.339720 ACTACTCCCTCCTACCATCTATATAG 57.660 42.308 3.10 3.10 0.00 1.31
730 1246 9.986599 ATACTACTCCCTCCTACCATCTATATA 57.013 37.037 0.00 0.00 0.00 0.86
731 1247 8.729047 CATACTACTCCCTCCTACCATCTATAT 58.271 40.741 0.00 0.00 0.00 0.86
732 1248 7.129038 CCATACTACTCCCTCCTACCATCTATA 59.871 44.444 0.00 0.00 0.00 1.31
733 1249 6.068735 CCATACTACTCCCTCCTACCATCTAT 60.069 46.154 0.00 0.00 0.00 1.98
734 1250 5.253330 CCATACTACTCCCTCCTACCATCTA 59.747 48.000 0.00 0.00 0.00 1.98
735 1251 4.044825 CCATACTACTCCCTCCTACCATCT 59.955 50.000 0.00 0.00 0.00 2.90
736 1252 4.202695 ACCATACTACTCCCTCCTACCATC 60.203 50.000 0.00 0.00 0.00 3.51
737 1253 3.733281 ACCATACTACTCCCTCCTACCAT 59.267 47.826 0.00 0.00 0.00 3.55
738 1254 3.136896 ACCATACTACTCCCTCCTACCA 58.863 50.000 0.00 0.00 0.00 3.25
739 1255 3.899612 ACCATACTACTCCCTCCTACC 57.100 52.381 0.00 0.00 0.00 3.18
740 1256 6.131961 TGTAAACCATACTACTCCCTCCTAC 58.868 44.000 0.00 0.00 0.00 3.18
741 1257 6.345646 TGTAAACCATACTACTCCCTCCTA 57.654 41.667 0.00 0.00 0.00 2.94
742 1258 5.216665 TGTAAACCATACTACTCCCTCCT 57.783 43.478 0.00 0.00 0.00 3.69
743 1259 5.424573 ACTTGTAAACCATACTACTCCCTCC 59.575 44.000 0.00 0.00 0.00 4.30
744 1260 6.406737 GGACTTGTAAACCATACTACTCCCTC 60.407 46.154 0.00 0.00 0.00 4.30
745 1261 5.424573 GGACTTGTAAACCATACTACTCCCT 59.575 44.000 0.00 0.00 0.00 4.20
746 1262 5.668471 GGACTTGTAAACCATACTACTCCC 58.332 45.833 0.00 0.00 0.00 4.30
747 1263 5.346522 CGGACTTGTAAACCATACTACTCC 58.653 45.833 0.00 0.00 0.00 3.85
748 1264 4.802563 GCGGACTTGTAAACCATACTACTC 59.197 45.833 0.00 0.00 0.00 2.59
749 1265 4.676196 CGCGGACTTGTAAACCATACTACT 60.676 45.833 0.00 0.00 0.00 2.57
750 1266 3.549070 CGCGGACTTGTAAACCATACTAC 59.451 47.826 0.00 0.00 0.00 2.73
751 1267 3.443329 TCGCGGACTTGTAAACCATACTA 59.557 43.478 6.13 0.00 0.00 1.82
752 1268 2.231964 TCGCGGACTTGTAAACCATACT 59.768 45.455 6.13 0.00 0.00 2.12
753 1269 2.609350 TCGCGGACTTGTAAACCATAC 58.391 47.619 6.13 0.00 0.00 2.39
770 1286 0.753262 TTAGGGCCTCTCTGATTCGC 59.247 55.000 10.74 0.00 0.00 4.70
839 2464 2.211250 AGTACTCGTAGCAGGTTCCA 57.789 50.000 0.00 0.00 0.00 3.53
845 2471 3.008330 ACACCACTAGTACTCGTAGCAG 58.992 50.000 0.00 0.00 0.00 4.24
896 2526 7.172703 ACAAAAATGTACTACTAGTGGTGAAGC 59.827 37.037 21.07 9.44 0.00 3.86
964 2601 8.742125 TTCTCCATCCAGACCTATATTGTATT 57.258 34.615 0.00 0.00 0.00 1.89
972 2609 2.334023 GGCTTCTCCATCCAGACCTAT 58.666 52.381 0.00 0.00 34.01 2.57
1017 2654 1.153549 GCTAGCCTGACTTCCACCG 60.154 63.158 2.29 0.00 0.00 4.94
1018 2655 0.107945 CTGCTAGCCTGACTTCCACC 60.108 60.000 13.29 0.00 0.00 4.61
1112 2750 1.291184 CGTCTGAAAGCACGCCATGA 61.291 55.000 0.00 0.00 32.61 3.07
1162 2800 3.123620 CTGGAGCAGAAGCACGGC 61.124 66.667 0.00 0.00 45.49 5.68
1257 2899 6.003950 AGCAAAACTAGTGAGCCAAAAGATA 58.996 36.000 0.00 0.00 0.00 1.98
1360 3006 0.250858 TGACATGGAAGGTGCACTGG 60.251 55.000 17.98 1.43 0.00 4.00
1942 3619 6.183360 CCAAAGCCTATTGTCTTACACTTAGC 60.183 42.308 0.00 0.00 0.00 3.09
2292 3971 2.572191 TCGGTGCTACATACCTTTCG 57.428 50.000 0.00 0.00 36.03 3.46
2449 4128 1.371558 GGAGTGCTCGGAAACAGGT 59.628 57.895 0.00 0.00 0.00 4.00
2550 4229 4.943705 TCTGGTTGTCTTTCAGCATATTCC 59.056 41.667 0.00 0.00 0.00 3.01
2696 4375 4.343814 TCATGCGACCAGACATTTCCTATA 59.656 41.667 0.00 0.00 0.00 1.31
2716 4395 2.101582 GGCTCCAGTACTTGACGATCAT 59.898 50.000 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.