Multiple sequence alignment - TraesCS4A01G203400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G203400 chr4A 100.000 2985 0 0 1 2985 494011940 494008956 0.000000e+00 5513.0
1 TraesCS4A01G203400 chr4D 94.314 2093 52 16 634 2705 82731898 82729852 0.000000e+00 3144.0
2 TraesCS4A01G203400 chr4D 99.306 288 1 1 2697 2984 82729824 82729538 1.230000e-143 520.0
3 TraesCS4A01G203400 chr4D 90.074 272 13 10 342 602 82732486 82732218 1.020000e-89 340.0
4 TraesCS4A01G203400 chr4D 94.118 51 2 1 592 641 82732059 82732009 3.190000e-10 76.8
5 TraesCS4A01G203400 chr4B 94.095 1829 64 17 634 2449 117058832 117057035 0.000000e+00 2739.0
6 TraesCS4A01G203400 chr4B 94.404 554 11 3 2448 2985 117056930 117056381 0.000000e+00 833.0
7 TraesCS4A01G203400 chr4B 91.204 216 10 5 262 470 117077442 117077229 4.870000e-73 285.0
8 TraesCS4A01G203400 chr4B 91.204 216 10 5 262 470 117098792 117098579 4.870000e-73 285.0
9 TraesCS4A01G203400 chr4B 95.604 91 2 2 362 450 167943805 167943895 8.620000e-31 145.0
10 TraesCS4A01G203400 chrUn 91.204 216 10 5 262 470 361776668 361776455 4.870000e-73 285.0
11 TraesCS4A01G203400 chrUn 91.204 216 10 5 262 470 470173621 470173834 4.870000e-73 285.0
12 TraesCS4A01G203400 chr7B 89.785 186 12 2 17 196 745595365 745595549 6.430000e-57 231.0
13 TraesCS4A01G203400 chr6A 86.957 184 12 5 24 196 5793438 5793256 2.350000e-46 196.0
14 TraesCS4A01G203400 chr6A 86.339 183 13 5 25 196 5698866 5698685 3.930000e-44 189.0
15 TraesCS4A01G203400 chr6A 85.714 182 16 4 24 196 5607821 5607641 1.830000e-42 183.0
16 TraesCS4A01G203400 chr2B 96.629 89 2 1 358 445 463357318 463357230 2.400000e-31 147.0
17 TraesCS4A01G203400 chr5D 90.385 104 8 2 357 459 9077906 9077804 5.190000e-28 135.0
18 TraesCS4A01G203400 chr1B 91.176 102 6 3 348 449 596116935 596117033 5.190000e-28 135.0
19 TraesCS4A01G203400 chr3B 83.962 106 8 7 95 194 796839780 796839678 3.170000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G203400 chr4A 494008956 494011940 2984 True 5513.0 5513 100.0000 1 2985 1 chr4A.!!$R1 2984
1 TraesCS4A01G203400 chr4D 82729538 82732486 2948 True 1020.2 3144 94.4530 342 2984 4 chr4D.!!$R1 2642
2 TraesCS4A01G203400 chr4B 117056381 117058832 2451 True 1786.0 2739 94.2495 634 2985 2 chr4B.!!$R3 2351

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 212 0.025001 GGAACGTGTCGATCAATGCG 59.975 55.0 0.00 0.00 30.42 4.73 F
317 318 0.328592 TGGGGGCATTACAGCGTTTA 59.671 50.0 0.00 0.00 34.64 2.01 F
568 578 0.669318 ACCCACAGAACACATACGCG 60.669 55.0 3.53 3.53 0.00 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1211 1527 0.031585 CGTGTCCACCGTCTTCTTCA 59.968 55.000 0.0 0.0 0.00 3.02 R
1507 1826 0.472925 TGGTACTCCTTGGACAGCCA 60.473 55.000 0.0 0.0 44.17 4.75 R
2323 2642 2.404215 CCGGTCAGTCGGCATAATAAG 58.596 52.381 0.0 0.0 43.71 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.268920 TCGCCTCCATGGAGTTGC 59.731 61.111 34.49 29.54 40.44 4.17
18 19 2.046023 CGCCTCCATGGAGTTGCA 60.046 61.111 34.49 4.67 40.44 4.08
19 20 2.110967 CGCCTCCATGGAGTTGCAG 61.111 63.158 34.49 23.29 40.44 4.41
20 21 1.001641 GCCTCCATGGAGTTGCAGT 60.002 57.895 34.49 0.00 40.44 4.40
21 22 1.310933 GCCTCCATGGAGTTGCAGTG 61.311 60.000 34.49 20.89 40.44 3.66
22 23 0.037303 CCTCCATGGAGTTGCAGTGT 59.963 55.000 34.49 0.00 40.44 3.55
23 24 1.162698 CTCCATGGAGTTGCAGTGTG 58.837 55.000 30.55 4.78 37.47 3.82
24 25 0.250858 TCCATGGAGTTGCAGTGTGG 60.251 55.000 11.44 0.00 0.00 4.17
25 26 1.582968 CATGGAGTTGCAGTGTGGC 59.417 57.895 0.00 0.00 0.00 5.01
26 27 0.892358 CATGGAGTTGCAGTGTGGCT 60.892 55.000 0.00 0.00 34.04 4.75
27 28 0.607489 ATGGAGTTGCAGTGTGGCTC 60.607 55.000 0.00 0.00 34.04 4.70
28 29 1.968540 GGAGTTGCAGTGTGGCTCC 60.969 63.158 11.32 11.32 38.89 4.70
29 30 1.227943 GAGTTGCAGTGTGGCTCCA 60.228 57.895 0.00 0.00 34.04 3.86
30 31 1.510480 GAGTTGCAGTGTGGCTCCAC 61.510 60.000 11.95 11.95 46.33 4.02
31 32 2.203337 TTGCAGTGTGGCTCCACC 60.203 61.111 15.76 7.79 45.63 4.61
32 33 4.624364 TGCAGTGTGGCTCCACCG 62.624 66.667 15.76 6.28 45.63 4.94
33 34 4.626081 GCAGTGTGGCTCCACCGT 62.626 66.667 15.76 0.89 45.63 4.83
34 35 2.357517 CAGTGTGGCTCCACCGTC 60.358 66.667 15.76 7.12 45.63 4.79
35 36 3.626924 AGTGTGGCTCCACCGTCC 61.627 66.667 15.76 2.53 45.63 4.79
36 37 3.626924 GTGTGGCTCCACCGTCCT 61.627 66.667 15.76 0.00 45.63 3.85
37 38 2.847234 TGTGGCTCCACCGTCCTT 60.847 61.111 15.76 0.00 45.63 3.36
38 39 2.047179 GTGGCTCCACCGTCCTTC 60.047 66.667 7.82 0.00 43.94 3.46
39 40 2.525629 TGGCTCCACCGTCCTTCA 60.526 61.111 0.00 0.00 43.94 3.02
40 41 1.918293 TGGCTCCACCGTCCTTCAT 60.918 57.895 0.00 0.00 43.94 2.57
41 42 1.299976 GGCTCCACCGTCCTTCATT 59.700 57.895 0.00 0.00 0.00 2.57
42 43 0.539986 GGCTCCACCGTCCTTCATTA 59.460 55.000 0.00 0.00 0.00 1.90
43 44 1.141053 GGCTCCACCGTCCTTCATTAT 59.859 52.381 0.00 0.00 0.00 1.28
44 45 2.213499 GCTCCACCGTCCTTCATTATG 58.787 52.381 0.00 0.00 0.00 1.90
45 46 2.213499 CTCCACCGTCCTTCATTATGC 58.787 52.381 0.00 0.00 0.00 3.14
46 47 1.134220 TCCACCGTCCTTCATTATGCC 60.134 52.381 0.00 0.00 0.00 4.40
47 48 0.937304 CACCGTCCTTCATTATGCCG 59.063 55.000 0.00 0.00 0.00 5.69
48 49 0.814010 ACCGTCCTTCATTATGCCGC 60.814 55.000 0.00 0.00 0.00 6.53
49 50 1.564622 CGTCCTTCATTATGCCGCG 59.435 57.895 0.00 0.00 0.00 6.46
50 51 1.279840 GTCCTTCATTATGCCGCGC 59.720 57.895 0.00 0.00 0.00 6.86
51 52 2.243957 TCCTTCATTATGCCGCGCG 61.244 57.895 25.67 25.67 0.00 6.86
52 53 2.243957 CCTTCATTATGCCGCGCGA 61.244 57.895 34.63 13.72 0.00 5.87
53 54 1.568612 CCTTCATTATGCCGCGCGAT 61.569 55.000 34.63 20.70 0.00 4.58
54 55 0.451628 CTTCATTATGCCGCGCGATG 60.452 55.000 34.63 25.47 0.00 3.84
55 56 2.442561 TTCATTATGCCGCGCGATGC 62.443 55.000 34.63 27.30 41.47 3.91
56 57 2.971959 ATTATGCCGCGCGATGCA 60.972 55.556 34.63 32.14 46.97 3.96
57 58 2.958204 ATTATGCCGCGCGATGCAG 61.958 57.895 34.63 15.72 46.97 4.41
67 68 2.360350 CGATGCAGCAGGGTGGTT 60.360 61.111 1.53 0.00 0.00 3.67
68 69 2.693762 CGATGCAGCAGGGTGGTTG 61.694 63.158 1.53 0.00 0.00 3.77
69 70 2.283388 ATGCAGCAGGGTGGTTGG 60.283 61.111 0.00 0.00 0.00 3.77
88 89 3.119096 GCCGTCGCCTTCTGGTTC 61.119 66.667 0.00 0.00 35.27 3.62
89 90 2.809601 CCGTCGCCTTCTGGTTCG 60.810 66.667 0.00 0.00 35.27 3.95
90 91 3.479269 CGTCGCCTTCTGGTTCGC 61.479 66.667 0.00 0.00 35.27 4.70
91 92 2.048127 GTCGCCTTCTGGTTCGCT 60.048 61.111 0.00 0.00 35.27 4.93
92 93 1.668151 GTCGCCTTCTGGTTCGCTT 60.668 57.895 0.00 0.00 35.27 4.68
93 94 1.374252 TCGCCTTCTGGTTCGCTTC 60.374 57.895 0.00 0.00 35.27 3.86
94 95 2.391389 CGCCTTCTGGTTCGCTTCC 61.391 63.158 0.00 0.00 35.27 3.46
95 96 1.302511 GCCTTCTGGTTCGCTTCCA 60.303 57.895 0.00 0.00 35.27 3.53
96 97 0.678048 GCCTTCTGGTTCGCTTCCAT 60.678 55.000 0.00 0.00 34.26 3.41
97 98 1.089920 CCTTCTGGTTCGCTTCCATG 58.910 55.000 0.00 0.00 34.26 3.66
98 99 1.339055 CCTTCTGGTTCGCTTCCATGA 60.339 52.381 0.00 0.00 34.26 3.07
99 100 2.426522 CTTCTGGTTCGCTTCCATGAA 58.573 47.619 0.00 0.00 34.26 2.57
100 101 1.808411 TCTGGTTCGCTTCCATGAAC 58.192 50.000 0.00 0.00 42.87 3.18
101 102 1.347707 TCTGGTTCGCTTCCATGAACT 59.652 47.619 0.00 0.00 43.10 3.01
102 103 2.154462 CTGGTTCGCTTCCATGAACTT 58.846 47.619 0.00 0.00 43.10 2.66
103 104 1.879380 TGGTTCGCTTCCATGAACTTG 59.121 47.619 0.00 0.00 43.10 3.16
104 105 1.880027 GGTTCGCTTCCATGAACTTGT 59.120 47.619 0.00 0.00 43.10 3.16
105 106 2.095718 GGTTCGCTTCCATGAACTTGTC 60.096 50.000 0.00 0.00 43.10 3.18
106 107 1.428448 TCGCTTCCATGAACTTGTCG 58.572 50.000 0.00 0.00 0.00 4.35
107 108 1.148310 CGCTTCCATGAACTTGTCGT 58.852 50.000 0.00 0.00 0.00 4.34
108 109 1.136252 CGCTTCCATGAACTTGTCGTG 60.136 52.381 0.00 0.00 42.18 4.35
109 110 1.873591 GCTTCCATGAACTTGTCGTGT 59.126 47.619 0.00 0.00 41.10 4.49
110 111 2.290641 GCTTCCATGAACTTGTCGTGTT 59.709 45.455 0.00 0.00 41.10 3.32
111 112 3.243068 GCTTCCATGAACTTGTCGTGTTT 60.243 43.478 0.00 0.00 41.10 2.83
112 113 4.733523 GCTTCCATGAACTTGTCGTGTTTT 60.734 41.667 0.00 0.00 41.10 2.43
113 114 4.285807 TCCATGAACTTGTCGTGTTTTG 57.714 40.909 0.00 0.00 41.10 2.44
114 115 2.788786 CCATGAACTTGTCGTGTTTTGC 59.211 45.455 0.00 0.00 41.10 3.68
115 116 2.166741 TGAACTTGTCGTGTTTTGCG 57.833 45.000 0.00 0.00 0.00 4.85
116 117 1.465387 TGAACTTGTCGTGTTTTGCGT 59.535 42.857 0.00 0.00 0.00 5.24
117 118 2.098870 GAACTTGTCGTGTTTTGCGTC 58.901 47.619 0.00 0.00 0.00 5.19
118 119 0.025770 ACTTGTCGTGTTTTGCGTCG 59.974 50.000 0.00 0.00 0.00 5.12
119 120 1.253044 CTTGTCGTGTTTTGCGTCGC 61.253 55.000 11.10 11.10 0.00 5.19
120 121 2.424640 GTCGTGTTTTGCGTCGCC 60.425 61.111 15.88 0.00 0.00 5.54
121 122 2.890961 TCGTGTTTTGCGTCGCCA 60.891 55.556 15.88 0.00 0.00 5.69
122 123 2.248135 TCGTGTTTTGCGTCGCCAT 61.248 52.632 15.88 0.00 0.00 4.40
123 124 2.074353 CGTGTTTTGCGTCGCCATG 61.074 57.895 15.88 6.89 0.00 3.66
124 125 1.729131 GTGTTTTGCGTCGCCATGG 60.729 57.895 15.88 7.63 0.00 3.66
125 126 1.894282 TGTTTTGCGTCGCCATGGA 60.894 52.632 18.40 0.00 0.00 3.41
126 127 1.284408 GTTTTGCGTCGCCATGGAA 59.716 52.632 18.40 0.00 0.00 3.53
127 128 0.729140 GTTTTGCGTCGCCATGGAAG 60.729 55.000 18.40 8.79 0.00 3.46
128 129 2.470801 TTTTGCGTCGCCATGGAAGC 62.471 55.000 18.40 14.57 41.04 3.86
131 132 2.892425 CGTCGCCATGGAAGCCTC 60.892 66.667 18.40 0.00 0.00 4.70
132 133 2.586792 GTCGCCATGGAAGCCTCT 59.413 61.111 18.40 0.00 0.00 3.69
133 134 1.522580 GTCGCCATGGAAGCCTCTC 60.523 63.158 18.40 0.00 0.00 3.20
134 135 1.687146 TCGCCATGGAAGCCTCTCT 60.687 57.895 18.40 0.00 0.00 3.10
135 136 0.397114 TCGCCATGGAAGCCTCTCTA 60.397 55.000 18.40 0.00 0.00 2.43
136 137 0.249657 CGCCATGGAAGCCTCTCTAC 60.250 60.000 18.40 0.00 0.00 2.59
137 138 0.249657 GCCATGGAAGCCTCTCTACG 60.250 60.000 18.40 0.00 0.00 3.51
138 139 1.403814 CCATGGAAGCCTCTCTACGA 58.596 55.000 5.56 0.00 0.00 3.43
139 140 1.757118 CCATGGAAGCCTCTCTACGAA 59.243 52.381 5.56 0.00 0.00 3.85
140 141 2.482142 CCATGGAAGCCTCTCTACGAAC 60.482 54.545 5.56 0.00 0.00 3.95
141 142 1.919240 TGGAAGCCTCTCTACGAACA 58.081 50.000 0.00 0.00 0.00 3.18
142 143 1.819288 TGGAAGCCTCTCTACGAACAG 59.181 52.381 0.00 0.00 0.00 3.16
143 144 2.093106 GGAAGCCTCTCTACGAACAGA 58.907 52.381 0.00 0.00 0.00 3.41
144 145 2.098443 GGAAGCCTCTCTACGAACAGAG 59.902 54.545 0.00 0.00 42.96 3.35
145 146 2.791347 AGCCTCTCTACGAACAGAGA 57.209 50.000 13.02 13.02 46.93 3.10
146 147 2.361789 AGCCTCTCTACGAACAGAGAC 58.638 52.381 10.64 4.80 44.82 3.36
147 148 1.062880 GCCTCTCTACGAACAGAGACG 59.937 57.143 10.64 8.93 44.82 4.18
148 149 1.666700 CCTCTCTACGAACAGAGACGG 59.333 57.143 10.64 11.68 44.82 4.79
149 150 1.666700 CTCTCTACGAACAGAGACGGG 59.333 57.143 10.64 1.47 44.82 5.28
150 151 0.733729 CTCTACGAACAGAGACGGGG 59.266 60.000 7.41 0.00 44.11 5.73
151 152 0.325933 TCTACGAACAGAGACGGGGA 59.674 55.000 0.00 0.00 0.00 4.81
152 153 1.171308 CTACGAACAGAGACGGGGAA 58.829 55.000 0.00 0.00 0.00 3.97
153 154 1.749634 CTACGAACAGAGACGGGGAAT 59.250 52.381 0.00 0.00 0.00 3.01
154 155 1.843368 ACGAACAGAGACGGGGAATA 58.157 50.000 0.00 0.00 0.00 1.75
155 156 2.173519 ACGAACAGAGACGGGGAATAA 58.826 47.619 0.00 0.00 0.00 1.40
156 157 2.094338 ACGAACAGAGACGGGGAATAAC 60.094 50.000 0.00 0.00 0.00 1.89
157 158 2.537401 GAACAGAGACGGGGAATAACG 58.463 52.381 0.00 0.00 0.00 3.18
158 159 0.822164 ACAGAGACGGGGAATAACGG 59.178 55.000 0.00 0.00 0.00 4.44
159 160 0.104304 CAGAGACGGGGAATAACGGG 59.896 60.000 0.00 0.00 0.00 5.28
160 161 1.227468 GAGACGGGGAATAACGGGC 60.227 63.158 0.00 0.00 0.00 6.13
161 162 2.586914 GACGGGGAATAACGGGCG 60.587 66.667 0.00 0.00 0.00 6.13
162 163 4.165486 ACGGGGAATAACGGGCGG 62.165 66.667 0.00 0.00 0.00 6.13
163 164 3.852307 CGGGGAATAACGGGCGGA 61.852 66.667 0.00 0.00 0.00 5.54
164 165 2.110420 GGGGAATAACGGGCGGAG 59.890 66.667 0.00 0.00 0.00 4.63
165 166 2.110420 GGGAATAACGGGCGGAGG 59.890 66.667 0.00 0.00 0.00 4.30
166 167 2.437396 GGGAATAACGGGCGGAGGA 61.437 63.158 0.00 0.00 0.00 3.71
167 168 1.069258 GGAATAACGGGCGGAGGAG 59.931 63.158 0.00 0.00 0.00 3.69
168 169 1.397390 GGAATAACGGGCGGAGGAGA 61.397 60.000 0.00 0.00 0.00 3.71
169 170 0.032267 GAATAACGGGCGGAGGAGAG 59.968 60.000 0.00 0.00 0.00 3.20
170 171 0.396695 AATAACGGGCGGAGGAGAGA 60.397 55.000 0.00 0.00 0.00 3.10
171 172 1.108132 ATAACGGGCGGAGGAGAGAC 61.108 60.000 0.00 0.00 0.00 3.36
174 175 3.519930 GGGCGGAGGAGAGACGAC 61.520 72.222 0.00 0.00 34.22 4.34
175 176 3.878519 GGCGGAGGAGAGACGACG 61.879 72.222 0.00 0.00 0.00 5.12
176 177 3.126225 GCGGAGGAGAGACGACGT 61.126 66.667 0.00 0.00 0.00 4.34
177 178 2.785921 CGGAGGAGAGACGACGTG 59.214 66.667 4.58 0.00 0.00 4.49
178 179 1.740664 CGGAGGAGAGACGACGTGA 60.741 63.158 4.58 0.00 0.00 4.35
179 180 1.296755 CGGAGGAGAGACGACGTGAA 61.297 60.000 4.58 0.00 0.00 3.18
180 181 0.879765 GGAGGAGAGACGACGTGAAA 59.120 55.000 4.58 0.00 0.00 2.69
181 182 1.135632 GGAGGAGAGACGACGTGAAAG 60.136 57.143 4.58 0.00 0.00 2.62
182 183 0.882474 AGGAGAGACGACGTGAAAGG 59.118 55.000 4.58 0.00 0.00 3.11
183 184 0.733223 GGAGAGACGACGTGAAAGGC 60.733 60.000 4.58 0.00 0.00 4.35
184 185 0.241481 GAGAGACGACGTGAAAGGCT 59.759 55.000 4.58 0.00 0.00 4.58
185 186 0.039074 AGAGACGACGTGAAAGGCTG 60.039 55.000 4.58 0.00 0.00 4.85
186 187 1.618640 GAGACGACGTGAAAGGCTGC 61.619 60.000 4.58 0.00 0.00 5.25
187 188 1.954146 GACGACGTGAAAGGCTGCA 60.954 57.895 4.58 0.00 0.00 4.41
188 189 1.891060 GACGACGTGAAAGGCTGCAG 61.891 60.000 10.11 10.11 0.00 4.41
189 190 2.558313 GACGTGAAAGGCTGCAGC 59.442 61.111 30.88 30.88 41.14 5.25
190 191 1.963338 GACGTGAAAGGCTGCAGCT 60.963 57.895 35.82 18.89 41.70 4.24
191 192 2.180131 GACGTGAAAGGCTGCAGCTG 62.180 60.000 35.82 19.08 41.70 4.24
192 193 2.960170 GTGAAAGGCTGCAGCTGG 59.040 61.111 35.82 1.85 41.70 4.85
193 194 2.282674 TGAAAGGCTGCAGCTGGG 60.283 61.111 35.82 1.40 41.70 4.45
194 195 2.034687 GAAAGGCTGCAGCTGGGA 59.965 61.111 35.82 0.00 41.70 4.37
195 196 1.604593 GAAAGGCTGCAGCTGGGAA 60.605 57.895 35.82 0.00 41.70 3.97
196 197 1.871126 GAAAGGCTGCAGCTGGGAAC 61.871 60.000 35.82 19.44 41.70 3.62
197 198 4.711949 AGGCTGCAGCTGGGAACG 62.712 66.667 35.82 0.00 41.70 3.95
199 200 3.730761 GCTGCAGCTGGGAACGTG 61.731 66.667 31.33 0.00 38.21 4.49
200 201 2.281070 CTGCAGCTGGGAACGTGT 60.281 61.111 17.12 0.00 0.00 4.49
201 202 2.280797 TGCAGCTGGGAACGTGTC 60.281 61.111 17.12 0.00 0.00 3.67
202 203 3.414700 GCAGCTGGGAACGTGTCG 61.415 66.667 17.12 0.00 0.00 4.35
203 204 2.338620 CAGCTGGGAACGTGTCGA 59.661 61.111 5.57 0.00 0.00 4.20
204 205 1.079819 CAGCTGGGAACGTGTCGAT 60.080 57.895 5.57 0.00 0.00 3.59
205 206 1.078759 CAGCTGGGAACGTGTCGATC 61.079 60.000 5.57 0.00 0.00 3.69
206 207 1.080093 GCTGGGAACGTGTCGATCA 60.080 57.895 0.00 0.00 30.42 2.92
207 208 0.669318 GCTGGGAACGTGTCGATCAA 60.669 55.000 0.00 0.00 30.42 2.57
208 209 2.007049 GCTGGGAACGTGTCGATCAAT 61.007 52.381 0.00 0.00 30.42 2.57
209 210 1.660607 CTGGGAACGTGTCGATCAATG 59.339 52.381 0.00 0.00 30.42 2.82
210 211 0.373716 GGGAACGTGTCGATCAATGC 59.626 55.000 0.00 0.00 30.42 3.56
211 212 0.025001 GGAACGTGTCGATCAATGCG 59.975 55.000 0.00 0.00 30.42 4.73
212 213 0.584054 GAACGTGTCGATCAATGCGC 60.584 55.000 0.00 0.00 0.00 6.09
213 214 1.966493 AACGTGTCGATCAATGCGCC 61.966 55.000 4.18 0.00 0.00 6.53
214 215 2.167219 CGTGTCGATCAATGCGCCT 61.167 57.895 4.18 0.00 0.00 5.52
215 216 1.349627 GTGTCGATCAATGCGCCTG 59.650 57.895 4.18 1.86 0.00 4.85
216 217 1.815003 TGTCGATCAATGCGCCTGG 60.815 57.895 4.18 0.00 0.00 4.45
217 218 1.815421 GTCGATCAATGCGCCTGGT 60.815 57.895 4.18 0.00 0.00 4.00
218 219 1.078497 TCGATCAATGCGCCTGGTT 60.078 52.632 4.18 0.00 0.00 3.67
219 220 0.676466 TCGATCAATGCGCCTGGTTT 60.676 50.000 4.18 0.00 0.00 3.27
220 221 1.013596 CGATCAATGCGCCTGGTTTA 58.986 50.000 4.18 0.00 0.00 2.01
221 222 1.603802 CGATCAATGCGCCTGGTTTAT 59.396 47.619 4.18 0.00 0.00 1.40
222 223 2.349817 CGATCAATGCGCCTGGTTTATC 60.350 50.000 4.18 0.74 0.00 1.75
223 224 2.418368 TCAATGCGCCTGGTTTATCT 57.582 45.000 4.18 0.00 0.00 1.98
224 225 2.722094 TCAATGCGCCTGGTTTATCTT 58.278 42.857 4.18 0.00 0.00 2.40
225 226 3.088532 TCAATGCGCCTGGTTTATCTTT 58.911 40.909 4.18 0.00 0.00 2.52
226 227 3.128589 TCAATGCGCCTGGTTTATCTTTC 59.871 43.478 4.18 0.00 0.00 2.62
227 228 1.459450 TGCGCCTGGTTTATCTTTCC 58.541 50.000 4.18 0.00 0.00 3.13
228 229 0.738975 GCGCCTGGTTTATCTTTCCC 59.261 55.000 0.00 0.00 0.00 3.97
229 230 1.682087 GCGCCTGGTTTATCTTTCCCT 60.682 52.381 0.00 0.00 0.00 4.20
230 231 2.017049 CGCCTGGTTTATCTTTCCCTG 58.983 52.381 0.00 0.00 0.00 4.45
231 232 2.618045 CGCCTGGTTTATCTTTCCCTGT 60.618 50.000 0.00 0.00 0.00 4.00
232 233 3.431415 GCCTGGTTTATCTTTCCCTGTT 58.569 45.455 0.00 0.00 0.00 3.16
233 234 4.595986 GCCTGGTTTATCTTTCCCTGTTA 58.404 43.478 0.00 0.00 0.00 2.41
234 235 5.201243 GCCTGGTTTATCTTTCCCTGTTAT 58.799 41.667 0.00 0.00 0.00 1.89
235 236 5.299531 GCCTGGTTTATCTTTCCCTGTTATC 59.700 44.000 0.00 0.00 0.00 1.75
236 237 6.423182 CCTGGTTTATCTTTCCCTGTTATCA 58.577 40.000 0.00 0.00 0.00 2.15
237 238 7.062957 CCTGGTTTATCTTTCCCTGTTATCAT 58.937 38.462 0.00 0.00 0.00 2.45
238 239 7.229506 CCTGGTTTATCTTTCCCTGTTATCATC 59.770 40.741 0.00 0.00 0.00 2.92
239 240 7.060421 TGGTTTATCTTTCCCTGTTATCATCC 58.940 38.462 0.00 0.00 0.00 3.51
240 241 6.204882 GGTTTATCTTTCCCTGTTATCATCCG 59.795 42.308 0.00 0.00 0.00 4.18
241 242 3.838244 TCTTTCCCTGTTATCATCCGG 57.162 47.619 0.00 0.00 0.00 5.14
242 243 3.112263 TCTTTCCCTGTTATCATCCGGT 58.888 45.455 0.00 0.00 0.00 5.28
243 244 4.291792 TCTTTCCCTGTTATCATCCGGTA 58.708 43.478 0.00 0.00 0.00 4.02
244 245 4.344102 TCTTTCCCTGTTATCATCCGGTAG 59.656 45.833 0.00 0.00 0.00 3.18
245 246 3.605726 TCCCTGTTATCATCCGGTAGA 57.394 47.619 0.00 0.31 0.00 2.59
246 247 4.127918 TCCCTGTTATCATCCGGTAGAT 57.872 45.455 14.16 14.16 34.66 1.98
247 248 4.489737 TCCCTGTTATCATCCGGTAGATT 58.510 43.478 14.76 2.71 30.59 2.40
248 249 4.527038 TCCCTGTTATCATCCGGTAGATTC 59.473 45.833 14.76 10.13 30.59 2.52
249 250 4.528596 CCCTGTTATCATCCGGTAGATTCT 59.471 45.833 14.76 0.00 30.59 2.40
250 251 5.715279 CCCTGTTATCATCCGGTAGATTCTA 59.285 44.000 14.76 0.00 30.59 2.10
251 252 6.210784 CCCTGTTATCATCCGGTAGATTCTAA 59.789 42.308 14.76 3.48 30.59 2.10
252 253 7.256190 CCCTGTTATCATCCGGTAGATTCTAAA 60.256 40.741 14.76 3.18 30.59 1.85
253 254 7.599245 CCTGTTATCATCCGGTAGATTCTAAAC 59.401 40.741 14.76 13.01 30.59 2.01
254 255 7.143340 TGTTATCATCCGGTAGATTCTAAACG 58.857 38.462 14.76 10.48 30.59 3.60
255 256 5.786264 ATCATCCGGTAGATTCTAAACGT 57.214 39.130 0.00 0.00 30.59 3.99
256 257 5.587388 TCATCCGGTAGATTCTAAACGTT 57.413 39.130 0.00 0.00 30.59 3.99
257 258 5.969423 TCATCCGGTAGATTCTAAACGTTT 58.031 37.500 18.90 18.90 30.59 3.60
258 259 6.400568 TCATCCGGTAGATTCTAAACGTTTT 58.599 36.000 20.19 0.00 30.59 2.43
259 260 6.532657 TCATCCGGTAGATTCTAAACGTTTTC 59.467 38.462 20.19 10.53 30.59 2.29
260 261 5.170748 TCCGGTAGATTCTAAACGTTTTCC 58.829 41.667 20.19 8.11 0.00 3.13
261 262 4.931002 CCGGTAGATTCTAAACGTTTTCCA 59.069 41.667 20.19 3.51 0.00 3.53
262 263 5.583457 CCGGTAGATTCTAAACGTTTTCCAT 59.417 40.000 20.19 8.42 0.00 3.41
263 264 6.093082 CCGGTAGATTCTAAACGTTTTCCATT 59.907 38.462 20.19 4.10 0.00 3.16
264 265 7.361457 CCGGTAGATTCTAAACGTTTTCCATTT 60.361 37.037 20.19 6.57 0.00 2.32
265 266 8.658609 CGGTAGATTCTAAACGTTTTCCATTTA 58.341 33.333 20.19 5.67 0.00 1.40
282 283 9.935241 TTTCCATTTATTTTTAGTAATGCAGCA 57.065 25.926 0.00 0.00 0.00 4.41
283 284 8.925161 TCCATTTATTTTTAGTAATGCAGCAC 57.075 30.769 0.00 0.00 0.00 4.40
284 285 8.526978 TCCATTTATTTTTAGTAATGCAGCACA 58.473 29.630 0.00 0.00 0.00 4.57
285 286 9.316730 CCATTTATTTTTAGTAATGCAGCACAT 57.683 29.630 0.00 0.00 42.30 3.21
290 291 7.447374 TTTTTAGTAATGCAGCACATACAGT 57.553 32.000 18.03 5.50 38.34 3.55
291 292 8.554835 TTTTTAGTAATGCAGCACATACAGTA 57.445 30.769 18.03 4.75 38.34 2.74
292 293 7.770801 TTTAGTAATGCAGCACATACAGTAG 57.229 36.000 18.03 0.00 38.34 2.57
293 294 5.344743 AGTAATGCAGCACATACAGTAGT 57.655 39.130 18.03 0.04 38.34 2.73
294 295 6.465439 AGTAATGCAGCACATACAGTAGTA 57.535 37.500 18.03 0.00 38.34 1.82
295 296 6.507900 AGTAATGCAGCACATACAGTAGTAG 58.492 40.000 18.03 0.00 38.34 2.57
296 297 3.165058 TGCAGCACATACAGTAGTAGC 57.835 47.619 0.00 0.00 32.86 3.58
297 298 2.120232 GCAGCACATACAGTAGTAGCG 58.880 52.381 0.00 0.00 32.86 4.26
298 299 2.479730 GCAGCACATACAGTAGTAGCGT 60.480 50.000 0.00 0.00 32.86 5.07
299 300 3.108881 CAGCACATACAGTAGTAGCGTG 58.891 50.000 0.00 0.00 39.10 5.34
300 301 2.099263 AGCACATACAGTAGTAGCGTGG 59.901 50.000 0.00 0.00 37.73 4.94
301 302 2.798499 GCACATACAGTAGTAGCGTGGG 60.798 54.545 0.00 0.00 37.73 4.61
302 303 2.029623 ACATACAGTAGTAGCGTGGGG 58.970 52.381 0.00 0.00 32.86 4.96
303 304 1.340248 CATACAGTAGTAGCGTGGGGG 59.660 57.143 0.00 0.00 32.86 5.40
304 305 1.039233 TACAGTAGTAGCGTGGGGGC 61.039 60.000 0.00 0.00 0.00 5.80
305 306 2.038329 AGTAGTAGCGTGGGGGCA 59.962 61.111 0.00 0.00 34.64 5.36
306 307 1.382695 AGTAGTAGCGTGGGGGCAT 60.383 57.895 0.00 0.00 34.64 4.40
307 308 0.981277 AGTAGTAGCGTGGGGGCATT 60.981 55.000 0.00 0.00 34.64 3.56
308 309 0.754472 GTAGTAGCGTGGGGGCATTA 59.246 55.000 0.00 0.00 34.64 1.90
309 310 0.754472 TAGTAGCGTGGGGGCATTAC 59.246 55.000 0.00 0.00 34.64 1.89
310 311 1.222387 GTAGCGTGGGGGCATTACA 59.778 57.895 0.00 0.00 34.64 2.41
311 312 0.814010 GTAGCGTGGGGGCATTACAG 60.814 60.000 0.00 0.00 34.64 2.74
312 313 2.602746 TAGCGTGGGGGCATTACAGC 62.603 60.000 0.00 0.00 34.64 4.40
313 314 3.202001 CGTGGGGGCATTACAGCG 61.202 66.667 0.00 0.00 34.64 5.18
314 315 2.045340 GTGGGGGCATTACAGCGT 60.045 61.111 0.00 0.00 34.64 5.07
315 316 1.677633 GTGGGGGCATTACAGCGTT 60.678 57.895 0.00 0.00 34.64 4.84
316 317 1.075836 TGGGGGCATTACAGCGTTT 59.924 52.632 0.00 0.00 34.64 3.60
317 318 0.328592 TGGGGGCATTACAGCGTTTA 59.671 50.000 0.00 0.00 34.64 2.01
318 319 1.064314 TGGGGGCATTACAGCGTTTAT 60.064 47.619 0.00 0.00 34.64 1.40
319 320 1.336755 GGGGGCATTACAGCGTTTATG 59.663 52.381 0.00 0.00 34.64 1.90
320 321 2.294074 GGGGCATTACAGCGTTTATGA 58.706 47.619 0.00 0.00 34.64 2.15
321 322 2.290641 GGGGCATTACAGCGTTTATGAG 59.709 50.000 0.00 0.00 34.64 2.90
322 323 3.202906 GGGCATTACAGCGTTTATGAGA 58.797 45.455 0.00 0.00 34.64 3.27
323 324 3.625764 GGGCATTACAGCGTTTATGAGAA 59.374 43.478 0.00 0.00 34.64 2.87
324 325 4.260784 GGGCATTACAGCGTTTATGAGAAG 60.261 45.833 0.00 0.00 34.64 2.85
325 326 4.570772 GGCATTACAGCGTTTATGAGAAGA 59.429 41.667 0.00 0.00 34.64 2.87
326 327 5.064707 GGCATTACAGCGTTTATGAGAAGAA 59.935 40.000 0.00 0.00 34.64 2.52
327 328 6.403200 GGCATTACAGCGTTTATGAGAAGAAA 60.403 38.462 0.00 0.00 34.64 2.52
328 329 7.021196 GCATTACAGCGTTTATGAGAAGAAAA 58.979 34.615 0.00 0.00 0.00 2.29
329 330 7.007456 GCATTACAGCGTTTATGAGAAGAAAAC 59.993 37.037 0.00 0.00 0.00 2.43
330 331 7.485418 TTACAGCGTTTATGAGAAGAAAACA 57.515 32.000 0.00 0.00 33.67 2.83
331 332 6.371809 ACAGCGTTTATGAGAAGAAAACAA 57.628 33.333 0.00 0.00 33.67 2.83
332 333 6.970484 ACAGCGTTTATGAGAAGAAAACAAT 58.030 32.000 0.00 0.00 33.67 2.71
333 334 8.094798 ACAGCGTTTATGAGAAGAAAACAATA 57.905 30.769 0.00 0.00 33.67 1.90
334 335 8.730680 ACAGCGTTTATGAGAAGAAAACAATAT 58.269 29.630 0.00 0.00 33.67 1.28
335 336 9.214953 CAGCGTTTATGAGAAGAAAACAATATC 57.785 33.333 0.00 0.00 33.67 1.63
336 337 8.946085 AGCGTTTATGAGAAGAAAACAATATCA 58.054 29.630 0.00 0.00 33.67 2.15
337 338 9.722056 GCGTTTATGAGAAGAAAACAATATCAT 57.278 29.630 0.00 0.00 33.67 2.45
350 351 9.834628 GAAAACAATATCATACCGAACAAAGAA 57.165 29.630 0.00 0.00 0.00 2.52
354 355 9.173021 ACAATATCATACCGAACAAAGAAATCA 57.827 29.630 0.00 0.00 0.00 2.57
355 356 9.438291 CAATATCATACCGAACAAAGAAATCAC 57.562 33.333 0.00 0.00 0.00 3.06
356 357 8.731275 ATATCATACCGAACAAAGAAATCACA 57.269 30.769 0.00 0.00 0.00 3.58
362 363 5.098893 CCGAACAAAGAAATCACAACACAA 58.901 37.500 0.00 0.00 0.00 3.33
363 364 5.574830 CCGAACAAAGAAATCACAACACAAA 59.425 36.000 0.00 0.00 0.00 2.83
442 443 1.780309 TCCCCCGCATCTCCATATTTT 59.220 47.619 0.00 0.00 0.00 1.82
464 465 4.399004 TTGTTTTCACTTTGTCCCCATG 57.601 40.909 0.00 0.00 0.00 3.66
482 483 6.556874 TCCCCATGTTTTTCCTTTTTGAGTAT 59.443 34.615 0.00 0.00 0.00 2.12
483 484 6.873605 CCCCATGTTTTTCCTTTTTGAGTATC 59.126 38.462 0.00 0.00 0.00 2.24
495 496 9.074576 TCCTTTTTGAGTATCCTTTCTTTTACC 57.925 33.333 0.00 0.00 0.00 2.85
498 499 8.990163 TTTTGAGTATCCTTTCTTTTACCTGT 57.010 30.769 0.00 0.00 0.00 4.00
520 530 6.434596 TGTTGTCCATGTTTTTATCAGAACG 58.565 36.000 0.00 0.00 0.00 3.95
526 536 9.191995 GTCCATGTTTTTATCAGAACGAAAAAT 57.808 29.630 0.00 0.00 35.26 1.82
550 560 4.466726 ACCACCTCTGGAAGTCTACATTAC 59.533 45.833 0.00 0.00 40.55 1.89
568 578 0.669318 ACCCACAGAACACATACGCG 60.669 55.000 3.53 3.53 0.00 6.01
587 597 3.498927 CGAAGCTTCATTGCCATTTCT 57.501 42.857 25.47 0.00 0.00 2.52
605 784 1.816835 TCTTGGACGACGAGCTAACAT 59.183 47.619 0.00 0.00 0.00 2.71
636 934 1.065709 GGCGGTGAGAAATGGAGGTTA 60.066 52.381 0.00 0.00 0.00 2.85
641 939 5.640732 CGGTGAGAAATGGAGGTTATTTTG 58.359 41.667 0.00 0.00 0.00 2.44
658 960 1.764571 TTGCACGGTCAGGGTAGCTT 61.765 55.000 0.00 0.00 0.00 3.74
669 971 0.669625 GGGTAGCTTTGCTCGTTCGT 60.670 55.000 0.00 0.00 40.44 3.85
697 999 1.136828 CGGTTCATCCCTATCCCCAA 58.863 55.000 0.00 0.00 0.00 4.12
710 1012 5.393678 CCCTATCCCCAAATAAAACAACGTG 60.394 44.000 0.00 0.00 0.00 4.49
711 1013 4.529109 ATCCCCAAATAAAACAACGTGG 57.471 40.909 0.00 0.00 0.00 4.94
712 1014 3.563223 TCCCCAAATAAAACAACGTGGA 58.437 40.909 0.00 0.00 0.00 4.02
713 1015 4.153411 TCCCCAAATAAAACAACGTGGAT 58.847 39.130 0.00 0.00 0.00 3.41
714 1016 4.589374 TCCCCAAATAAAACAACGTGGATT 59.411 37.500 0.00 0.00 0.00 3.01
715 1017 5.070580 TCCCCAAATAAAACAACGTGGATTT 59.929 36.000 0.00 0.00 0.00 2.17
716 1018 6.267014 TCCCCAAATAAAACAACGTGGATTTA 59.733 34.615 7.74 7.74 0.00 1.40
717 1019 7.038941 TCCCCAAATAAAACAACGTGGATTTAT 60.039 33.333 11.33 11.33 30.22 1.40
718 1020 8.251721 CCCCAAATAAAACAACGTGGATTTATA 58.748 33.333 16.03 0.00 29.47 0.98
719 1021 9.810545 CCCAAATAAAACAACGTGGATTTATAT 57.189 29.630 16.03 6.59 29.47 0.86
1245 1561 1.134560 GACACGAGGATACACTGGTCC 59.865 57.143 0.00 0.00 41.41 4.46
1278 1594 2.121506 TGGGTGGGAGGAAAGGCT 60.122 61.111 0.00 0.00 0.00 4.58
1376 1692 2.297315 CACACTACCAGTTGAGCTCAGA 59.703 50.000 17.43 5.52 0.00 3.27
1378 1694 1.896465 ACTACCAGTTGAGCTCAGACC 59.104 52.381 17.43 9.11 0.00 3.85
1394 1710 2.816087 CAGACCAACAGAATTCACCCTG 59.184 50.000 8.44 0.00 36.53 4.45
1399 1715 0.687354 ACAGAATTCACCCTGCGTCT 59.313 50.000 8.44 0.00 33.90 4.18
1424 1742 1.699083 TCCATCTGCCTGAAACTGACA 59.301 47.619 0.00 0.00 0.00 3.58
1425 1743 2.082231 CCATCTGCCTGAAACTGACAG 58.918 52.381 0.00 0.00 35.43 3.51
1431 1749 1.233019 CCTGAAACTGACAGCACCAG 58.767 55.000 1.25 6.95 37.64 4.00
1432 1750 1.202687 CCTGAAACTGACAGCACCAGA 60.203 52.381 15.82 0.00 35.69 3.86
1433 1751 2.551721 CCTGAAACTGACAGCACCAGAT 60.552 50.000 15.82 0.00 35.69 2.90
1436 1754 3.953612 TGAAACTGACAGCACCAGATTTT 59.046 39.130 1.25 0.00 35.69 1.82
1894 2213 7.710044 ACTGATAGAACAGAAAGATGCTGTATG 59.290 37.037 0.00 0.00 45.27 2.39
1935 2254 9.573133 CAGACACGAATGATATAGTATATGCAA 57.427 33.333 7.41 0.00 0.00 4.08
2061 2380 6.713762 AAACTTGGATGTTTGAGTGAATGA 57.286 33.333 0.00 0.00 38.54 2.57
2062 2381 5.954296 ACTTGGATGTTTGAGTGAATGAG 57.046 39.130 0.00 0.00 0.00 2.90
2063 2382 5.624159 ACTTGGATGTTTGAGTGAATGAGA 58.376 37.500 0.00 0.00 0.00 3.27
2127 2446 2.871096 TACCAAGGTGCTAAACAGGG 57.129 50.000 1.07 0.00 0.00 4.45
2205 2524 0.619832 AGAGGAGGCAATCTCAGGCA 60.620 55.000 4.97 0.00 44.19 4.75
2323 2642 0.180406 AATCACCCTGTCGTATGGCC 59.820 55.000 0.00 0.00 0.00 5.36
2409 2728 2.582052 CCACCAGTTTCAGCCTGTTAA 58.418 47.619 0.00 0.00 0.00 2.01
2415 2734 5.248477 ACCAGTTTCAGCCTGTTAAGAGATA 59.752 40.000 0.19 0.00 0.00 1.98
2509 2942 3.600388 CTCCGTAGACAAAAAGCATCCT 58.400 45.455 0.00 0.00 0.00 3.24
2674 3107 7.272948 CAGTCAGTAAGTGTAAGTTTACGGATC 59.727 40.741 0.00 0.00 36.73 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.268920 GCAACTCCATGGAGGCGA 59.731 61.111 38.54 8.32 45.88 5.54
1 2 2.046023 TGCAACTCCATGGAGGCG 60.046 61.111 38.54 30.01 45.88 5.52
2 3 1.001641 ACTGCAACTCCATGGAGGC 60.002 57.895 38.54 32.50 45.88 4.70
3 4 0.037303 ACACTGCAACTCCATGGAGG 59.963 55.000 38.54 25.65 45.88 4.30
4 5 1.162698 CACACTGCAACTCCATGGAG 58.837 55.000 35.55 35.55 46.91 3.86
5 6 0.250858 CCACACTGCAACTCCATGGA 60.251 55.000 15.27 15.27 0.00 3.41
6 7 1.870055 GCCACACTGCAACTCCATGG 61.870 60.000 4.97 4.97 0.00 3.66
7 8 0.892358 AGCCACACTGCAACTCCATG 60.892 55.000 0.00 0.00 0.00 3.66
8 9 0.607489 GAGCCACACTGCAACTCCAT 60.607 55.000 0.00 0.00 0.00 3.41
9 10 1.227943 GAGCCACACTGCAACTCCA 60.228 57.895 0.00 0.00 0.00 3.86
10 11 1.968540 GGAGCCACACTGCAACTCC 60.969 63.158 0.00 0.00 40.14 3.85
11 12 1.227943 TGGAGCCACACTGCAACTC 60.228 57.895 0.00 0.00 44.73 3.01
12 13 2.918248 TGGAGCCACACTGCAACT 59.082 55.556 0.00 0.00 44.73 3.16
21 22 2.047179 GAAGGACGGTGGAGCCAC 60.047 66.667 11.18 11.18 45.49 5.01
22 23 1.488705 AATGAAGGACGGTGGAGCCA 61.489 55.000 0.00 0.00 36.97 4.75
23 24 0.539986 TAATGAAGGACGGTGGAGCC 59.460 55.000 0.00 0.00 0.00 4.70
24 25 2.213499 CATAATGAAGGACGGTGGAGC 58.787 52.381 0.00 0.00 0.00 4.70
25 26 2.213499 GCATAATGAAGGACGGTGGAG 58.787 52.381 0.00 0.00 0.00 3.86
26 27 1.134220 GGCATAATGAAGGACGGTGGA 60.134 52.381 0.00 0.00 0.00 4.02
27 28 1.308998 GGCATAATGAAGGACGGTGG 58.691 55.000 0.00 0.00 0.00 4.61
28 29 0.937304 CGGCATAATGAAGGACGGTG 59.063 55.000 0.00 0.00 0.00 4.94
29 30 0.814010 GCGGCATAATGAAGGACGGT 60.814 55.000 0.00 0.00 0.00 4.83
30 31 1.831389 CGCGGCATAATGAAGGACGG 61.831 60.000 0.00 0.00 0.00 4.79
31 32 1.564622 CGCGGCATAATGAAGGACG 59.435 57.895 0.00 0.00 0.00 4.79
32 33 1.279840 GCGCGGCATAATGAAGGAC 59.720 57.895 8.83 0.00 0.00 3.85
33 34 2.243957 CGCGCGGCATAATGAAGGA 61.244 57.895 24.84 0.00 0.00 3.36
34 35 1.568612 ATCGCGCGGCATAATGAAGG 61.569 55.000 31.69 0.00 0.00 3.46
35 36 0.451628 CATCGCGCGGCATAATGAAG 60.452 55.000 31.69 0.03 0.00 3.02
36 37 1.569003 CATCGCGCGGCATAATGAA 59.431 52.632 31.69 7.32 0.00 2.57
37 38 2.953605 GCATCGCGCGGCATAATGA 61.954 57.895 31.69 8.20 0.00 2.57
38 39 2.500369 GCATCGCGCGGCATAATG 60.500 61.111 31.69 25.09 0.00 1.90
39 40 2.958204 CTGCATCGCGCGGCATAAT 61.958 57.895 28.96 14.14 46.97 1.28
40 41 3.639008 CTGCATCGCGCGGCATAA 61.639 61.111 28.96 12.33 46.97 1.90
50 51 2.360350 AACCACCCTGCTGCATCG 60.360 61.111 1.31 0.00 0.00 3.84
51 52 2.345760 CCAACCACCCTGCTGCATC 61.346 63.158 1.31 0.00 0.00 3.91
52 53 2.283388 CCAACCACCCTGCTGCAT 60.283 61.111 1.31 0.00 0.00 3.96
71 72 3.119096 GAACCAGAAGGCGACGGC 61.119 66.667 14.41 14.41 39.06 5.68
72 73 2.809601 CGAACCAGAAGGCGACGG 60.810 66.667 0.00 0.00 39.06 4.79
73 74 3.479269 GCGAACCAGAAGGCGACG 61.479 66.667 0.00 0.00 39.06 5.12
74 75 1.627550 GAAGCGAACCAGAAGGCGAC 61.628 60.000 0.00 0.00 39.06 5.19
75 76 1.374252 GAAGCGAACCAGAAGGCGA 60.374 57.895 0.00 0.00 39.06 5.54
76 77 2.391389 GGAAGCGAACCAGAAGGCG 61.391 63.158 0.00 0.00 39.06 5.52
77 78 0.678048 ATGGAAGCGAACCAGAAGGC 60.678 55.000 0.00 0.00 40.89 4.35
78 79 1.089920 CATGGAAGCGAACCAGAAGG 58.910 55.000 0.00 0.00 40.89 3.46
79 80 2.099141 TCATGGAAGCGAACCAGAAG 57.901 50.000 0.00 0.00 40.89 2.85
80 81 2.151202 GTTCATGGAAGCGAACCAGAA 58.849 47.619 0.00 0.00 40.89 3.02
81 82 1.347707 AGTTCATGGAAGCGAACCAGA 59.652 47.619 0.00 0.00 42.00 3.86
82 83 1.813513 AGTTCATGGAAGCGAACCAG 58.186 50.000 0.00 0.00 42.00 4.00
83 84 1.879380 CAAGTTCATGGAAGCGAACCA 59.121 47.619 0.00 0.00 42.00 3.67
84 85 1.880027 ACAAGTTCATGGAAGCGAACC 59.120 47.619 0.00 0.00 42.00 3.62
85 86 2.411547 CGACAAGTTCATGGAAGCGAAC 60.412 50.000 0.00 0.00 41.48 3.95
86 87 1.798223 CGACAAGTTCATGGAAGCGAA 59.202 47.619 0.00 0.00 0.00 4.70
87 88 1.270094 ACGACAAGTTCATGGAAGCGA 60.270 47.619 0.00 0.00 0.00 4.93
88 89 1.136252 CACGACAAGTTCATGGAAGCG 60.136 52.381 0.00 0.00 0.00 4.68
89 90 1.873591 ACACGACAAGTTCATGGAAGC 59.126 47.619 0.00 0.00 0.00 3.86
90 91 4.552166 AAACACGACAAGTTCATGGAAG 57.448 40.909 0.00 0.00 0.00 3.46
91 92 4.667262 CAAAACACGACAAGTTCATGGAA 58.333 39.130 0.00 0.00 0.00 3.53
92 93 3.488384 GCAAAACACGACAAGTTCATGGA 60.488 43.478 0.00 0.00 0.00 3.41
93 94 2.788786 GCAAAACACGACAAGTTCATGG 59.211 45.455 0.00 0.00 0.00 3.66
94 95 2.463653 CGCAAAACACGACAAGTTCATG 59.536 45.455 0.00 0.00 0.00 3.07
95 96 2.096819 ACGCAAAACACGACAAGTTCAT 59.903 40.909 0.00 0.00 0.00 2.57
96 97 1.465387 ACGCAAAACACGACAAGTTCA 59.535 42.857 0.00 0.00 0.00 3.18
97 98 2.098870 GACGCAAAACACGACAAGTTC 58.901 47.619 0.00 0.00 0.00 3.01
98 99 1.528198 CGACGCAAAACACGACAAGTT 60.528 47.619 0.00 0.00 0.00 2.66
99 100 0.025770 CGACGCAAAACACGACAAGT 59.974 50.000 0.00 0.00 0.00 3.16
100 101 1.253044 GCGACGCAAAACACGACAAG 61.253 55.000 16.42 0.00 0.00 3.16
101 102 1.297012 GCGACGCAAAACACGACAA 60.297 52.632 16.42 0.00 0.00 3.18
102 103 2.321740 GCGACGCAAAACACGACA 59.678 55.556 16.42 0.00 0.00 4.35
103 104 2.424640 GGCGACGCAAAACACGAC 60.425 61.111 23.09 0.00 0.00 4.34
104 105 2.248135 ATGGCGACGCAAAACACGA 61.248 52.632 23.09 0.00 0.00 4.35
105 106 2.074353 CATGGCGACGCAAAACACG 61.074 57.895 23.09 0.00 0.00 4.49
106 107 1.729131 CCATGGCGACGCAAAACAC 60.729 57.895 23.09 3.15 0.00 3.32
107 108 1.448119 TTCCATGGCGACGCAAAACA 61.448 50.000 23.09 10.67 0.00 2.83
108 109 0.729140 CTTCCATGGCGACGCAAAAC 60.729 55.000 23.09 4.37 0.00 2.43
109 110 1.578926 CTTCCATGGCGACGCAAAA 59.421 52.632 23.09 6.88 0.00 2.44
110 111 2.976840 GCTTCCATGGCGACGCAAA 61.977 57.895 23.09 9.71 0.00 3.68
111 112 3.430862 GCTTCCATGGCGACGCAA 61.431 61.111 23.09 11.74 0.00 4.85
114 115 2.892425 GAGGCTTCCATGGCGACG 60.892 66.667 6.96 0.00 37.59 5.12
115 116 1.522580 GAGAGGCTTCCATGGCGAC 60.523 63.158 6.96 2.23 37.59 5.19
116 117 0.397114 TAGAGAGGCTTCCATGGCGA 60.397 55.000 6.96 0.00 37.59 5.54
117 118 0.249657 GTAGAGAGGCTTCCATGGCG 60.250 60.000 6.96 1.19 37.59 5.69
118 119 0.249657 CGTAGAGAGGCTTCCATGGC 60.250 60.000 6.96 0.00 0.00 4.40
119 120 1.403814 TCGTAGAGAGGCTTCCATGG 58.596 55.000 4.97 4.97 0.00 3.66
120 121 2.166459 TGTTCGTAGAGAGGCTTCCATG 59.834 50.000 0.00 0.00 38.43 3.66
121 122 2.428890 CTGTTCGTAGAGAGGCTTCCAT 59.571 50.000 0.00 0.00 38.43 3.41
122 123 1.819288 CTGTTCGTAGAGAGGCTTCCA 59.181 52.381 0.00 0.00 38.43 3.53
123 124 2.093106 TCTGTTCGTAGAGAGGCTTCC 58.907 52.381 0.00 0.00 38.43 3.46
124 125 3.011119 TCTCTGTTCGTAGAGAGGCTTC 58.989 50.000 14.82 0.00 46.12 3.86
125 126 3.074675 TCTCTGTTCGTAGAGAGGCTT 57.925 47.619 14.82 0.00 46.12 4.35
126 127 2.791347 TCTCTGTTCGTAGAGAGGCT 57.209 50.000 14.82 0.00 46.12 4.58
131 132 0.733729 CCCCGTCTCTGTTCGTAGAG 59.266 60.000 7.48 7.48 44.42 2.43
132 133 0.325933 TCCCCGTCTCTGTTCGTAGA 59.674 55.000 0.00 0.00 0.00 2.59
133 134 1.171308 TTCCCCGTCTCTGTTCGTAG 58.829 55.000 0.00 0.00 0.00 3.51
134 135 1.843368 ATTCCCCGTCTCTGTTCGTA 58.157 50.000 0.00 0.00 0.00 3.43
135 136 1.843368 TATTCCCCGTCTCTGTTCGT 58.157 50.000 0.00 0.00 0.00 3.85
136 137 2.537401 GTTATTCCCCGTCTCTGTTCG 58.463 52.381 0.00 0.00 0.00 3.95
137 138 2.537401 CGTTATTCCCCGTCTCTGTTC 58.463 52.381 0.00 0.00 0.00 3.18
138 139 1.206371 CCGTTATTCCCCGTCTCTGTT 59.794 52.381 0.00 0.00 0.00 3.16
139 140 0.822164 CCGTTATTCCCCGTCTCTGT 59.178 55.000 0.00 0.00 0.00 3.41
140 141 0.104304 CCCGTTATTCCCCGTCTCTG 59.896 60.000 0.00 0.00 0.00 3.35
141 142 1.683418 GCCCGTTATTCCCCGTCTCT 61.683 60.000 0.00 0.00 0.00 3.10
142 143 1.227468 GCCCGTTATTCCCCGTCTC 60.227 63.158 0.00 0.00 0.00 3.36
143 144 2.905681 GCCCGTTATTCCCCGTCT 59.094 61.111 0.00 0.00 0.00 4.18
144 145 2.586914 CGCCCGTTATTCCCCGTC 60.587 66.667 0.00 0.00 0.00 4.79
145 146 4.165486 CCGCCCGTTATTCCCCGT 62.165 66.667 0.00 0.00 0.00 5.28
146 147 3.802418 CTCCGCCCGTTATTCCCCG 62.802 68.421 0.00 0.00 0.00 5.73
147 148 2.110420 CTCCGCCCGTTATTCCCC 59.890 66.667 0.00 0.00 0.00 4.81
148 149 2.110420 CCTCCGCCCGTTATTCCC 59.890 66.667 0.00 0.00 0.00 3.97
149 150 1.069258 CTCCTCCGCCCGTTATTCC 59.931 63.158 0.00 0.00 0.00 3.01
150 151 0.032267 CTCTCCTCCGCCCGTTATTC 59.968 60.000 0.00 0.00 0.00 1.75
151 152 0.396695 TCTCTCCTCCGCCCGTTATT 60.397 55.000 0.00 0.00 0.00 1.40
152 153 1.108132 GTCTCTCCTCCGCCCGTTAT 61.108 60.000 0.00 0.00 0.00 1.89
153 154 1.751927 GTCTCTCCTCCGCCCGTTA 60.752 63.158 0.00 0.00 0.00 3.18
154 155 3.069318 GTCTCTCCTCCGCCCGTT 61.069 66.667 0.00 0.00 0.00 4.44
157 158 3.519930 GTCGTCTCTCCTCCGCCC 61.520 72.222 0.00 0.00 0.00 6.13
158 159 3.878519 CGTCGTCTCTCCTCCGCC 61.879 72.222 0.00 0.00 0.00 6.13
159 160 3.126225 ACGTCGTCTCTCCTCCGC 61.126 66.667 0.00 0.00 0.00 5.54
160 161 1.296755 TTCACGTCGTCTCTCCTCCG 61.297 60.000 0.00 0.00 0.00 4.63
161 162 0.879765 TTTCACGTCGTCTCTCCTCC 59.120 55.000 0.00 0.00 0.00 4.30
162 163 1.135632 CCTTTCACGTCGTCTCTCCTC 60.136 57.143 0.00 0.00 0.00 3.71
163 164 0.882474 CCTTTCACGTCGTCTCTCCT 59.118 55.000 0.00 0.00 0.00 3.69
164 165 0.733223 GCCTTTCACGTCGTCTCTCC 60.733 60.000 0.00 0.00 0.00 3.71
165 166 0.241481 AGCCTTTCACGTCGTCTCTC 59.759 55.000 0.00 0.00 0.00 3.20
166 167 0.039074 CAGCCTTTCACGTCGTCTCT 60.039 55.000 0.00 0.00 0.00 3.10
167 168 1.618640 GCAGCCTTTCACGTCGTCTC 61.619 60.000 0.00 0.00 0.00 3.36
168 169 1.664965 GCAGCCTTTCACGTCGTCT 60.665 57.895 0.00 0.00 0.00 4.18
169 170 1.891060 CTGCAGCCTTTCACGTCGTC 61.891 60.000 0.00 0.00 0.00 4.20
170 171 1.956170 CTGCAGCCTTTCACGTCGT 60.956 57.895 0.00 0.00 0.00 4.34
171 172 2.856032 CTGCAGCCTTTCACGTCG 59.144 61.111 0.00 0.00 0.00 5.12
172 173 1.963338 AGCTGCAGCCTTTCACGTC 60.963 57.895 34.39 3.66 43.38 4.34
173 174 2.111878 AGCTGCAGCCTTTCACGT 59.888 55.556 34.39 11.28 43.38 4.49
174 175 2.559840 CAGCTGCAGCCTTTCACG 59.440 61.111 34.39 10.95 43.38 4.35
175 176 2.633509 CCCAGCTGCAGCCTTTCAC 61.634 63.158 34.39 6.08 43.38 3.18
176 177 2.282674 CCCAGCTGCAGCCTTTCA 60.283 61.111 34.39 0.00 43.38 2.69
177 178 1.604593 TTCCCAGCTGCAGCCTTTC 60.605 57.895 34.39 7.70 43.38 2.62
178 179 1.905354 GTTCCCAGCTGCAGCCTTT 60.905 57.895 34.39 14.59 43.38 3.11
179 180 2.282745 GTTCCCAGCTGCAGCCTT 60.283 61.111 34.39 15.43 43.38 4.35
180 181 4.711949 CGTTCCCAGCTGCAGCCT 62.712 66.667 34.39 19.10 43.38 4.58
182 183 3.730761 CACGTTCCCAGCTGCAGC 61.731 66.667 31.53 31.53 42.49 5.25
183 184 2.281070 ACACGTTCCCAGCTGCAG 60.281 61.111 10.11 10.11 0.00 4.41
184 185 2.280797 GACACGTTCCCAGCTGCA 60.281 61.111 8.66 0.00 0.00 4.41
185 186 3.414700 CGACACGTTCCCAGCTGC 61.415 66.667 8.66 0.00 0.00 5.25
186 187 1.078759 GATCGACACGTTCCCAGCTG 61.079 60.000 6.78 6.78 0.00 4.24
187 188 1.215647 GATCGACACGTTCCCAGCT 59.784 57.895 0.00 0.00 0.00 4.24
188 189 0.669318 TTGATCGACACGTTCCCAGC 60.669 55.000 0.00 0.00 0.00 4.85
189 190 1.660607 CATTGATCGACACGTTCCCAG 59.339 52.381 0.00 0.00 0.00 4.45
190 191 1.720805 CATTGATCGACACGTTCCCA 58.279 50.000 0.00 0.00 0.00 4.37
191 192 0.373716 GCATTGATCGACACGTTCCC 59.626 55.000 0.00 0.00 0.00 3.97
192 193 0.025001 CGCATTGATCGACACGTTCC 59.975 55.000 0.00 0.00 0.00 3.62
193 194 0.584054 GCGCATTGATCGACACGTTC 60.584 55.000 0.30 0.00 0.00 3.95
194 195 1.419922 GCGCATTGATCGACACGTT 59.580 52.632 0.30 0.00 0.00 3.99
195 196 2.452813 GGCGCATTGATCGACACGT 61.453 57.895 10.83 0.00 34.56 4.49
196 197 2.167219 AGGCGCATTGATCGACACG 61.167 57.895 10.83 2.71 37.44 4.49
197 198 1.349627 CAGGCGCATTGATCGACAC 59.650 57.895 10.83 0.00 37.44 3.67
198 199 1.815003 CCAGGCGCATTGATCGACA 60.815 57.895 10.83 0.00 37.44 4.35
199 200 1.369091 AACCAGGCGCATTGATCGAC 61.369 55.000 10.83 0.00 34.64 4.20
200 201 0.676466 AAACCAGGCGCATTGATCGA 60.676 50.000 10.83 0.00 0.00 3.59
201 202 1.013596 TAAACCAGGCGCATTGATCG 58.986 50.000 10.83 0.00 0.00 3.69
202 203 2.880890 AGATAAACCAGGCGCATTGATC 59.119 45.455 10.83 5.98 0.00 2.92
203 204 2.936202 AGATAAACCAGGCGCATTGAT 58.064 42.857 10.83 0.00 0.00 2.57
204 205 2.418368 AGATAAACCAGGCGCATTGA 57.582 45.000 10.83 0.00 0.00 2.57
205 206 3.438360 GAAAGATAAACCAGGCGCATTG 58.562 45.455 10.83 6.99 0.00 2.82
206 207 2.427095 GGAAAGATAAACCAGGCGCATT 59.573 45.455 10.83 0.00 0.00 3.56
207 208 2.024414 GGAAAGATAAACCAGGCGCAT 58.976 47.619 10.83 0.00 0.00 4.73
208 209 1.459450 GGAAAGATAAACCAGGCGCA 58.541 50.000 10.83 0.00 0.00 6.09
209 210 0.738975 GGGAAAGATAAACCAGGCGC 59.261 55.000 0.00 0.00 0.00 6.53
210 211 2.017049 CAGGGAAAGATAAACCAGGCG 58.983 52.381 0.00 0.00 0.00 5.52
211 212 3.087370 ACAGGGAAAGATAAACCAGGC 57.913 47.619 0.00 0.00 0.00 4.85
212 213 6.423182 TGATAACAGGGAAAGATAAACCAGG 58.577 40.000 0.00 0.00 0.00 4.45
213 214 7.229506 GGATGATAACAGGGAAAGATAAACCAG 59.770 40.741 0.00 0.00 0.00 4.00
214 215 7.060421 GGATGATAACAGGGAAAGATAAACCA 58.940 38.462 0.00 0.00 0.00 3.67
215 216 6.204882 CGGATGATAACAGGGAAAGATAAACC 59.795 42.308 0.00 0.00 0.00 3.27
216 217 6.204882 CCGGATGATAACAGGGAAAGATAAAC 59.795 42.308 0.00 0.00 0.00 2.01
217 218 6.126594 ACCGGATGATAACAGGGAAAGATAAA 60.127 38.462 9.46 0.00 0.00 1.40
218 219 5.368523 ACCGGATGATAACAGGGAAAGATAA 59.631 40.000 9.46 0.00 0.00 1.75
219 220 4.905456 ACCGGATGATAACAGGGAAAGATA 59.095 41.667 9.46 0.00 0.00 1.98
220 221 3.716872 ACCGGATGATAACAGGGAAAGAT 59.283 43.478 9.46 0.00 0.00 2.40
221 222 3.112263 ACCGGATGATAACAGGGAAAGA 58.888 45.455 9.46 0.00 0.00 2.52
222 223 3.560636 ACCGGATGATAACAGGGAAAG 57.439 47.619 9.46 0.00 0.00 2.62
223 224 4.291792 TCTACCGGATGATAACAGGGAAA 58.708 43.478 9.46 0.00 0.00 3.13
224 225 3.918566 TCTACCGGATGATAACAGGGAA 58.081 45.455 9.46 0.00 0.00 3.97
225 226 3.605726 TCTACCGGATGATAACAGGGA 57.394 47.619 9.46 0.00 0.00 4.20
226 227 4.528596 AGAATCTACCGGATGATAACAGGG 59.471 45.833 9.46 0.00 34.45 4.45
227 228 5.730296 AGAATCTACCGGATGATAACAGG 57.270 43.478 9.46 0.00 34.45 4.00
228 229 7.326305 CGTTTAGAATCTACCGGATGATAACAG 59.674 40.741 9.46 5.66 34.45 3.16
229 230 7.143340 CGTTTAGAATCTACCGGATGATAACA 58.857 38.462 9.46 0.00 34.45 2.41
230 231 7.144000 ACGTTTAGAATCTACCGGATGATAAC 58.856 38.462 9.46 10.78 34.45 1.89
231 232 7.281040 ACGTTTAGAATCTACCGGATGATAA 57.719 36.000 9.46 0.00 34.45 1.75
232 233 6.889301 ACGTTTAGAATCTACCGGATGATA 57.111 37.500 9.46 0.00 34.45 2.15
233 234 5.786264 ACGTTTAGAATCTACCGGATGAT 57.214 39.130 9.46 8.41 34.45 2.45
234 235 5.587388 AACGTTTAGAATCTACCGGATGA 57.413 39.130 9.46 5.96 34.45 2.92
235 236 6.238022 GGAAAACGTTTAGAATCTACCGGATG 60.238 42.308 15.03 0.00 34.45 3.51
236 237 5.814188 GGAAAACGTTTAGAATCTACCGGAT 59.186 40.000 15.03 0.00 35.97 4.18
237 238 5.170748 GGAAAACGTTTAGAATCTACCGGA 58.829 41.667 15.03 0.00 0.00 5.14
238 239 4.931002 TGGAAAACGTTTAGAATCTACCGG 59.069 41.667 15.03 0.00 0.00 5.28
239 240 6.657836 ATGGAAAACGTTTAGAATCTACCG 57.342 37.500 15.03 6.91 0.00 4.02
256 257 9.935241 TGCTGCATTACTAAAAATAAATGGAAA 57.065 25.926 0.00 0.00 30.73 3.13
257 258 9.364989 GTGCTGCATTACTAAAAATAAATGGAA 57.635 29.630 5.27 0.00 30.73 3.53
258 259 8.526978 TGTGCTGCATTACTAAAAATAAATGGA 58.473 29.630 5.27 0.00 31.46 3.41
259 260 8.700722 TGTGCTGCATTACTAAAAATAAATGG 57.299 30.769 5.27 0.00 31.46 3.16
264 265 9.173021 ACTGTATGTGCTGCATTACTAAAAATA 57.827 29.630 19.63 4.47 38.94 1.40
265 266 8.055279 ACTGTATGTGCTGCATTACTAAAAAT 57.945 30.769 19.63 3.55 38.94 1.82
266 267 7.447374 ACTGTATGTGCTGCATTACTAAAAA 57.553 32.000 19.63 5.47 38.94 1.94
267 268 7.822334 ACTACTGTATGTGCTGCATTACTAAAA 59.178 33.333 19.63 5.73 38.94 1.52
268 269 7.327975 ACTACTGTATGTGCTGCATTACTAAA 58.672 34.615 19.63 9.13 38.94 1.85
269 270 6.873997 ACTACTGTATGTGCTGCATTACTAA 58.126 36.000 19.63 9.36 38.94 2.24
270 271 6.465439 ACTACTGTATGTGCTGCATTACTA 57.535 37.500 19.63 9.29 38.94 1.82
271 272 5.344743 ACTACTGTATGTGCTGCATTACT 57.655 39.130 19.63 8.81 38.94 2.24
272 273 5.175856 GCTACTACTGTATGTGCTGCATTAC 59.824 44.000 5.27 11.67 38.94 1.89
273 274 5.289595 GCTACTACTGTATGTGCTGCATTA 58.710 41.667 5.27 0.00 38.94 1.90
274 275 4.122776 GCTACTACTGTATGTGCTGCATT 58.877 43.478 5.27 0.00 38.94 3.56
275 276 3.722147 GCTACTACTGTATGTGCTGCAT 58.278 45.455 5.27 0.00 41.42 3.96
276 277 2.479560 CGCTACTACTGTATGTGCTGCA 60.480 50.000 0.00 0.00 0.00 4.41
277 278 2.120232 CGCTACTACTGTATGTGCTGC 58.880 52.381 0.00 0.00 0.00 5.25
278 279 3.108881 CACGCTACTACTGTATGTGCTG 58.891 50.000 0.00 0.00 32.32 4.41
279 280 2.099263 CCACGCTACTACTGTATGTGCT 59.901 50.000 0.00 0.00 35.45 4.40
280 281 2.460918 CCACGCTACTACTGTATGTGC 58.539 52.381 0.00 0.00 35.45 4.57
281 282 2.223735 CCCCACGCTACTACTGTATGTG 60.224 54.545 0.00 0.00 36.01 3.21
282 283 2.029623 CCCCACGCTACTACTGTATGT 58.970 52.381 0.00 0.00 0.00 2.29
283 284 1.340248 CCCCCACGCTACTACTGTATG 59.660 57.143 0.00 0.00 0.00 2.39
284 285 1.700955 CCCCCACGCTACTACTGTAT 58.299 55.000 0.00 0.00 0.00 2.29
285 286 1.039233 GCCCCCACGCTACTACTGTA 61.039 60.000 0.00 0.00 0.00 2.74
286 287 2.356780 GCCCCCACGCTACTACTGT 61.357 63.158 0.00 0.00 0.00 3.55
287 288 1.686325 ATGCCCCCACGCTACTACTG 61.686 60.000 0.00 0.00 0.00 2.74
288 289 0.981277 AATGCCCCCACGCTACTACT 60.981 55.000 0.00 0.00 0.00 2.57
289 290 0.754472 TAATGCCCCCACGCTACTAC 59.246 55.000 0.00 0.00 0.00 2.73
290 291 0.754472 GTAATGCCCCCACGCTACTA 59.246 55.000 0.00 0.00 0.00 1.82
291 292 1.268992 TGTAATGCCCCCACGCTACT 61.269 55.000 0.00 0.00 0.00 2.57
292 293 0.814010 CTGTAATGCCCCCACGCTAC 60.814 60.000 0.00 0.00 0.00 3.58
293 294 1.524961 CTGTAATGCCCCCACGCTA 59.475 57.895 0.00 0.00 0.00 4.26
294 295 2.272146 CTGTAATGCCCCCACGCT 59.728 61.111 0.00 0.00 0.00 5.07
295 296 3.518068 GCTGTAATGCCCCCACGC 61.518 66.667 0.00 0.00 0.00 5.34
296 297 3.202001 CGCTGTAATGCCCCCACG 61.202 66.667 0.00 0.00 0.00 4.94
297 298 1.248101 AAACGCTGTAATGCCCCCAC 61.248 55.000 0.00 0.00 0.00 4.61
298 299 0.328592 TAAACGCTGTAATGCCCCCA 59.671 50.000 0.00 0.00 0.00 4.96
299 300 1.336755 CATAAACGCTGTAATGCCCCC 59.663 52.381 0.00 0.00 0.00 5.40
300 301 2.290641 CTCATAAACGCTGTAATGCCCC 59.709 50.000 0.00 0.00 0.00 5.80
301 302 3.202906 TCTCATAAACGCTGTAATGCCC 58.797 45.455 0.00 0.00 0.00 5.36
302 303 4.570772 TCTTCTCATAAACGCTGTAATGCC 59.429 41.667 0.00 0.00 0.00 4.40
303 304 5.718649 TCTTCTCATAAACGCTGTAATGC 57.281 39.130 0.00 0.00 0.00 3.56
304 305 8.015087 TGTTTTCTTCTCATAAACGCTGTAATG 58.985 33.333 0.00 0.00 35.16 1.90
305 306 8.094798 TGTTTTCTTCTCATAAACGCTGTAAT 57.905 30.769 0.00 0.00 35.16 1.89
306 307 7.485418 TGTTTTCTTCTCATAAACGCTGTAA 57.515 32.000 0.00 0.00 35.16 2.41
307 308 7.485418 TTGTTTTCTTCTCATAAACGCTGTA 57.515 32.000 0.00 0.00 35.16 2.74
308 309 6.371809 TTGTTTTCTTCTCATAAACGCTGT 57.628 33.333 0.00 0.00 35.16 4.40
309 310 9.214953 GATATTGTTTTCTTCTCATAAACGCTG 57.785 33.333 0.00 0.00 35.16 5.18
310 311 8.946085 TGATATTGTTTTCTTCTCATAAACGCT 58.054 29.630 0.00 0.00 35.16 5.07
311 312 9.722056 ATGATATTGTTTTCTTCTCATAAACGC 57.278 29.630 0.00 0.00 35.16 4.84
317 318 9.613428 TTCGGTATGATATTGTTTTCTTCTCAT 57.387 29.630 0.00 0.00 0.00 2.90
318 319 8.879759 GTTCGGTATGATATTGTTTTCTTCTCA 58.120 33.333 0.00 0.00 0.00 3.27
319 320 8.879759 TGTTCGGTATGATATTGTTTTCTTCTC 58.120 33.333 0.00 0.00 0.00 2.87
320 321 8.786826 TGTTCGGTATGATATTGTTTTCTTCT 57.213 30.769 0.00 0.00 0.00 2.85
321 322 9.834628 TTTGTTCGGTATGATATTGTTTTCTTC 57.165 29.630 0.00 0.00 0.00 2.87
322 323 9.840427 CTTTGTTCGGTATGATATTGTTTTCTT 57.160 29.630 0.00 0.00 0.00 2.52
323 324 9.226606 TCTTTGTTCGGTATGATATTGTTTTCT 57.773 29.630 0.00 0.00 0.00 2.52
324 325 9.834628 TTCTTTGTTCGGTATGATATTGTTTTC 57.165 29.630 0.00 0.00 0.00 2.29
328 329 9.173021 TGATTTCTTTGTTCGGTATGATATTGT 57.827 29.630 0.00 0.00 0.00 2.71
329 330 9.438291 GTGATTTCTTTGTTCGGTATGATATTG 57.562 33.333 0.00 0.00 0.00 1.90
330 331 9.173021 TGTGATTTCTTTGTTCGGTATGATATT 57.827 29.630 0.00 0.00 0.00 1.28
331 332 8.731275 TGTGATTTCTTTGTTCGGTATGATAT 57.269 30.769 0.00 0.00 0.00 1.63
332 333 8.447833 GTTGTGATTTCTTTGTTCGGTATGATA 58.552 33.333 0.00 0.00 0.00 2.15
333 334 7.040755 TGTTGTGATTTCTTTGTTCGGTATGAT 60.041 33.333 0.00 0.00 0.00 2.45
334 335 6.261158 TGTTGTGATTTCTTTGTTCGGTATGA 59.739 34.615 0.00 0.00 0.00 2.15
335 336 6.359617 GTGTTGTGATTTCTTTGTTCGGTATG 59.640 38.462 0.00 0.00 0.00 2.39
336 337 6.038825 TGTGTTGTGATTTCTTTGTTCGGTAT 59.961 34.615 0.00 0.00 0.00 2.73
337 338 5.354513 TGTGTTGTGATTTCTTTGTTCGGTA 59.645 36.000 0.00 0.00 0.00 4.02
338 339 4.156922 TGTGTTGTGATTTCTTTGTTCGGT 59.843 37.500 0.00 0.00 0.00 4.69
339 340 4.667262 TGTGTTGTGATTTCTTTGTTCGG 58.333 39.130 0.00 0.00 0.00 4.30
340 341 6.237542 CCTTTGTGTTGTGATTTCTTTGTTCG 60.238 38.462 0.00 0.00 0.00 3.95
350 351 3.575805 ACATCCCCTTTGTGTTGTGATT 58.424 40.909 0.00 0.00 0.00 2.57
352 353 2.746279 ACATCCCCTTTGTGTTGTGA 57.254 45.000 0.00 0.00 0.00 3.58
353 354 2.228822 GCTACATCCCCTTTGTGTTGTG 59.771 50.000 0.00 0.00 0.00 3.33
354 355 2.108250 AGCTACATCCCCTTTGTGTTGT 59.892 45.455 0.00 0.00 0.00 3.32
355 356 2.749621 GAGCTACATCCCCTTTGTGTTG 59.250 50.000 0.00 0.00 0.00 3.33
356 357 2.375174 TGAGCTACATCCCCTTTGTGTT 59.625 45.455 0.00 0.00 0.00 3.32
362 363 2.582636 ACCATTTGAGCTACATCCCCTT 59.417 45.455 0.00 0.00 0.00 3.95
363 364 2.208872 ACCATTTGAGCTACATCCCCT 58.791 47.619 0.00 0.00 0.00 4.79
482 483 5.118729 TGGACAACAGGTAAAAGAAAGGA 57.881 39.130 0.00 0.00 0.00 3.36
483 484 5.301805 ACATGGACAACAGGTAAAAGAAAGG 59.698 40.000 0.00 0.00 43.24 3.11
495 496 6.578545 CGTTCTGATAAAAACATGGACAACAG 59.421 38.462 0.00 0.00 0.00 3.16
498 499 6.869315 TCGTTCTGATAAAAACATGGACAA 57.131 33.333 0.00 0.00 0.00 3.18
520 530 5.561679 AGACTTCCAGAGGTGGTATTTTTC 58.438 41.667 0.00 0.00 45.28 2.29
526 536 3.820195 TGTAGACTTCCAGAGGTGGTA 57.180 47.619 0.00 0.00 45.28 3.25
550 560 0.389296 TCGCGTATGTGTTCTGTGGG 60.389 55.000 5.77 0.00 0.00 4.61
568 578 3.930848 CCAAGAAATGGCAATGAAGCTTC 59.069 43.478 19.89 19.89 43.80 3.86
587 597 1.542472 TCATGTTAGCTCGTCGTCCAA 59.458 47.619 0.00 0.00 0.00 3.53
605 784 3.276091 CACCGCCACAAACGCTCA 61.276 61.111 0.00 0.00 0.00 4.26
636 934 1.821216 CTACCCTGACCGTGCAAAAT 58.179 50.000 0.00 0.00 0.00 1.82
641 939 1.003718 AAAGCTACCCTGACCGTGC 60.004 57.895 0.00 0.00 0.00 5.34
658 960 1.301401 CCTTCCCACGAACGAGCAA 60.301 57.895 0.14 0.00 0.00 3.91
669 971 2.674754 GATGAACCGGCCTTCCCA 59.325 61.111 0.00 0.00 0.00 4.37
728 1030 9.188588 CGTTATTTCTCTACTTATAAATCCGCA 57.811 33.333 0.00 0.00 0.00 5.69
729 1031 9.403110 TCGTTATTTCTCTACTTATAAATCCGC 57.597 33.333 0.00 0.00 0.00 5.54
967 1271 1.371635 GTGCGGTTGTGTTCATGCC 60.372 57.895 0.00 0.00 0.00 4.40
1122 1426 4.634133 ACGACGAACCTTGCGCGA 62.634 61.111 12.10 0.00 34.32 5.87
1164 1468 0.692419 CTGTAGCCTCTGGGGATGGT 60.692 60.000 0.00 0.00 37.23 3.55
1206 1522 0.460284 CCACCGTCTTCTTCATCCCG 60.460 60.000 0.00 0.00 0.00 5.14
1211 1527 0.031585 CGTGTCCACCGTCTTCTTCA 59.968 55.000 0.00 0.00 0.00 3.02
1278 1594 1.217244 GCCGTCGCCTTCCTTCTTA 59.783 57.895 0.00 0.00 0.00 2.10
1376 1692 1.620822 GCAGGGTGAATTCTGTTGGT 58.379 50.000 7.05 0.00 33.81 3.67
1378 1694 1.197721 GACGCAGGGTGAATTCTGTTG 59.802 52.381 7.05 1.77 33.81 3.33
1394 1710 1.086634 GGCAGATGGACAAGAGACGC 61.087 60.000 0.00 0.00 0.00 5.19
1399 1715 2.373169 AGTTTCAGGCAGATGGACAAGA 59.627 45.455 0.00 0.00 0.00 3.02
1443 1761 6.398918 CGATATTCCTAGGAACCTGGTTATG 58.601 44.000 26.57 9.89 36.91 1.90
1507 1826 0.472925 TGGTACTCCTTGGACAGCCA 60.473 55.000 0.00 0.00 44.17 4.75
2063 2382 5.045578 TGCCCTAATAAAGTGAAGAGAGCTT 60.046 40.000 0.00 0.00 36.96 3.74
2127 2446 2.618053 AGTATAGCACGACAAGGTTGC 58.382 47.619 0.00 0.00 0.00 4.17
2205 2524 6.711277 TCTCAGGCAACAGTTTCAACTATAT 58.289 36.000 0.00 0.00 37.08 0.86
2323 2642 2.404215 CCGGTCAGTCGGCATAATAAG 58.596 52.381 0.00 0.00 43.71 1.73
2509 2942 5.303259 TGTTAAGCATATATGGTGGCTCA 57.697 39.130 17.74 11.70 38.70 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.