Multiple sequence alignment - TraesCS4A01G202400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G202400 chr4A 100.000 5182 0 0 1 5182 492351265 492356446 0.000000e+00 9570.0
1 TraesCS4A01G202400 chr4A 86.667 1080 115 10 3131 4194 714551180 714552246 0.000000e+00 1170.0
2 TraesCS4A01G202400 chr4A 86.284 1079 108 10 3131 4194 715323755 715324808 0.000000e+00 1136.0
3 TraesCS4A01G202400 chr4A 94.196 672 38 1 1 672 288787876 288788546 0.000000e+00 1024.0
4 TraesCS4A01G202400 chr4A 92.604 676 49 1 4508 5182 215245401 215246076 0.000000e+00 970.0
5 TraesCS4A01G202400 chr4A 87.083 480 56 2 3715 4194 715337333 715337806 5.900000e-149 538.0
6 TraesCS4A01G202400 chr4A 88.205 390 38 1 978 1367 714550771 714551152 4.730000e-125 459.0
7 TraesCS4A01G202400 chr4A 87.406 397 33 2 973 1369 715323350 715323729 1.710000e-119 440.0
8 TraesCS4A01G202400 chr4A 86.222 225 23 1 973 1197 714982658 714982874 2.410000e-58 237.0
9 TraesCS4A01G202400 chr6D 92.664 1445 101 4 1377 2819 82637363 82638804 0.000000e+00 2076.0
10 TraesCS4A01G202400 chr6D 92.500 200 11 1 2898 3093 82639300 82639499 3.050000e-72 283.0
11 TraesCS4A01G202400 chr2D 92.329 1434 107 2 1380 2811 607512702 607511270 0.000000e+00 2036.0
12 TraesCS4A01G202400 chr2D 89.681 1066 104 6 1376 2438 364829770 364828708 0.000000e+00 1354.0
13 TraesCS4A01G202400 chr2D 94.519 675 37 0 4508 5182 181250435 181249761 0.000000e+00 1042.0
14 TraesCS4A01G202400 chr2D 90.247 687 58 8 2413 3093 528093610 528092927 0.000000e+00 889.0
15 TraesCS4A01G202400 chr2D 90.213 235 19 1 2863 3093 607510882 607510648 2.340000e-78 303.0
16 TraesCS4A01G202400 chr2D 70.886 553 130 20 3592 4131 152821355 152820821 3.300000e-17 100.0
17 TraesCS4A01G202400 chr5D 90.871 1435 114 7 1377 2809 361191598 361193017 0.000000e+00 1908.0
18 TraesCS4A01G202400 chr5D 89.024 1066 108 9 1377 2438 16150268 16149208 0.000000e+00 1312.0
19 TraesCS4A01G202400 chr5D 91.429 210 13 1 2889 3093 361193442 361193651 3.050000e-72 283.0
20 TraesCS4A01G202400 chr5D 93.750 48 3 0 2680 2727 210385804 210385851 7.200000e-09 73.1
21 TraesCS4A01G202400 chr4B 89.764 1358 94 10 3190 4509 71849648 71850998 0.000000e+00 1696.0
22 TraesCS4A01G202400 chr4B 89.323 1358 95 12 3190 4509 71802431 71803776 0.000000e+00 1659.0
23 TraesCS4A01G202400 chr4B 90.073 1098 88 9 3131 4224 116038829 116039909 0.000000e+00 1404.0
24 TraesCS4A01G202400 chr4B 89.312 552 32 9 829 1369 71799821 71800356 0.000000e+00 667.0
25 TraesCS4A01G202400 chr4B 88.768 552 34 8 829 1369 71847010 71847544 0.000000e+00 651.0
26 TraesCS4A01G202400 chr4B 90.756 476 31 5 898 1369 116038337 116038803 1.580000e-174 623.0
27 TraesCS4A01G202400 chr4B 93.609 266 14 2 4225 4488 116061776 116061512 1.350000e-105 394.0
28 TraesCS4A01G202400 chr4B 88.439 173 19 1 668 840 71798294 71798465 1.890000e-49 207.0
29 TraesCS4A01G202400 chr4B 88.439 173 19 1 668 840 71845483 71845654 1.890000e-49 207.0
30 TraesCS4A01G202400 chr4B 89.189 111 7 4 799 907 116036749 116036856 3.260000e-27 134.0
31 TraesCS4A01G202400 chr4B 100.000 28 0 0 795 822 654269611 654269584 9.000000e-03 52.8
32 TraesCS4A01G202400 chr1B 90.866 1259 108 6 1377 2630 120041927 120043183 0.000000e+00 1681.0
33 TraesCS4A01G202400 chr1B 94.963 675 34 0 4508 5182 328132760 328132086 0.000000e+00 1059.0
34 TraesCS4A01G202400 chr1B 94.737 38 1 1 2628 2664 27278744 27278781 2.020000e-04 58.4
35 TraesCS4A01G202400 chr4D 89.004 1255 119 8 1380 2630 468382912 468381673 0.000000e+00 1535.0
36 TraesCS4A01G202400 chr4D 90.497 905 52 7 3131 4014 82146254 82147145 0.000000e+00 1164.0
37 TraesCS4A01G202400 chr4D 86.822 516 47 8 4014 4509 82230080 82230594 1.630000e-154 556.0
38 TraesCS4A01G202400 chr4D 89.950 398 22 5 971 1368 82145848 82146227 1.000000e-136 497.0
39 TraesCS4A01G202400 chr7B 88.801 1259 130 10 1377 2630 634577147 634578399 0.000000e+00 1533.0
40 TraesCS4A01G202400 chr7B 88.095 168 20 0 2623 2790 52692229 52692396 3.160000e-47 200.0
41 TraesCS4A01G202400 chr7D 89.548 1062 105 6 1380 2438 351687525 351686467 0.000000e+00 1341.0
42 TraesCS4A01G202400 chr7D 88.257 1073 98 10 3131 4188 18034383 18033324 0.000000e+00 1258.0
43 TraesCS4A01G202400 chr7D 94.074 675 40 0 4508 5182 388650886 388651560 0.000000e+00 1026.0
44 TraesCS4A01G202400 chr7D 88.778 401 31 2 973 1367 18034803 18034411 3.630000e-131 479.0
45 TraesCS4A01G202400 chr7D 89.706 204 17 3 2893 3092 12911581 12911784 1.850000e-64 257.0
46 TraesCS4A01G202400 chr7D 88.793 116 12 1 978 1093 18035953 18035839 1.950000e-29 141.0
47 TraesCS4A01G202400 chr7A 88.480 1033 99 9 3177 4194 18088696 18087669 0.000000e+00 1230.0
48 TraesCS4A01G202400 chr7A 94.627 670 34 2 3 672 449575396 449576063 0.000000e+00 1037.0
49 TraesCS4A01G202400 chr7A 94.478 670 37 0 3 672 305695719 305695050 0.000000e+00 1033.0
50 TraesCS4A01G202400 chr7A 94.056 673 38 1 3 673 646886702 646887374 0.000000e+00 1020.0
51 TraesCS4A01G202400 chr7A 87.841 403 41 4 973 1375 18089156 18088762 2.830000e-127 466.0
52 TraesCS4A01G202400 chr7A 86.352 381 33 3 978 1358 18553806 18554167 1.050000e-106 398.0
53 TraesCS4A01G202400 chr7A 88.732 284 21 5 3131 3411 18554216 18554491 2.310000e-88 337.0
54 TraesCS4A01G202400 chr7A 88.793 116 12 1 978 1093 17751449 17751335 1.950000e-29 141.0
55 TraesCS4A01G202400 chr3B 90.889 922 77 6 1714 2630 744358807 744357888 0.000000e+00 1230.0
56 TraesCS4A01G202400 chr3B 93.926 675 41 0 4508 5182 586719693 586720367 0.000000e+00 1020.0
57 TraesCS4A01G202400 chr3B 86.234 385 48 3 2712 3091 124650084 124649700 3.730000e-111 412.0
58 TraesCS4A01G202400 chr3B 81.522 92 13 4 2913 3002 59888188 59888277 7.200000e-09 73.1
59 TraesCS4A01G202400 chr2A 95.522 670 30 0 3 672 121811804 121811135 0.000000e+00 1072.0
60 TraesCS4A01G202400 chr2A 94.815 675 31 1 4508 5182 768738168 768737498 0.000000e+00 1050.0
61 TraesCS4A01G202400 chr2A 94.619 669 35 1 3 670 176763694 176764362 0.000000e+00 1035.0
62 TraesCS4A01G202400 chr2A 88.556 367 31 1 2494 2860 761431668 761432023 7.970000e-118 435.0
63 TraesCS4A01G202400 chr5A 81.992 1255 215 10 1382 2630 580196898 580198147 0.000000e+00 1055.0
64 TraesCS4A01G202400 chr5A 95.144 659 31 1 3 661 568792608 568791951 0.000000e+00 1038.0
65 TraesCS4A01G202400 chr5A 92.889 675 48 0 4508 5182 688249074 688248400 0.000000e+00 981.0
66 TraesCS4A01G202400 chr5A 90.816 294 26 1 2801 3093 548758506 548758799 4.860000e-105 392.0
67 TraesCS4A01G202400 chr1D 94.667 675 36 0 4508 5182 291796725 291797399 0.000000e+00 1048.0
68 TraesCS4A01G202400 chr3A 94.603 667 36 0 3 669 731456219 731456885 0.000000e+00 1033.0
69 TraesCS4A01G202400 chr1A 94.603 667 35 1 3 669 247979286 247979951 0.000000e+00 1031.0
70 TraesCS4A01G202400 chr6B 81.638 1258 212 17 1380 2634 17944078 17942837 0.000000e+00 1026.0
71 TraesCS4A01G202400 chr6A 92.456 676 50 1 4508 5182 495114617 495115292 0.000000e+00 965.0
72 TraesCS4A01G202400 chr6A 78.082 146 22 9 2948 3086 4667252 4667394 3.330000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G202400 chr4A 492351265 492356446 5181 False 9570.000000 9570 100.000000 1 5182 1 chr4A.!!$F3 5181
1 TraesCS4A01G202400 chr4A 288787876 288788546 670 False 1024.000000 1024 94.196000 1 672 1 chr4A.!!$F2 671
2 TraesCS4A01G202400 chr4A 215245401 215246076 675 False 970.000000 970 92.604000 4508 5182 1 chr4A.!!$F1 674
3 TraesCS4A01G202400 chr4A 714550771 714552246 1475 False 814.500000 1170 87.436000 978 4194 2 chr4A.!!$F6 3216
4 TraesCS4A01G202400 chr4A 715323350 715324808 1458 False 788.000000 1136 86.845000 973 4194 2 chr4A.!!$F7 3221
5 TraesCS4A01G202400 chr6D 82637363 82639499 2136 False 1179.500000 2076 92.582000 1377 3093 2 chr6D.!!$F1 1716
6 TraesCS4A01G202400 chr2D 364828708 364829770 1062 True 1354.000000 1354 89.681000 1376 2438 1 chr2D.!!$R3 1062
7 TraesCS4A01G202400 chr2D 607510648 607512702 2054 True 1169.500000 2036 91.271000 1380 3093 2 chr2D.!!$R5 1713
8 TraesCS4A01G202400 chr2D 181249761 181250435 674 True 1042.000000 1042 94.519000 4508 5182 1 chr2D.!!$R2 674
9 TraesCS4A01G202400 chr2D 528092927 528093610 683 True 889.000000 889 90.247000 2413 3093 1 chr2D.!!$R4 680
10 TraesCS4A01G202400 chr5D 16149208 16150268 1060 True 1312.000000 1312 89.024000 1377 2438 1 chr5D.!!$R1 1061
11 TraesCS4A01G202400 chr5D 361191598 361193651 2053 False 1095.500000 1908 91.150000 1377 3093 2 chr5D.!!$F2 1716
12 TraesCS4A01G202400 chr4B 71845483 71850998 5515 False 851.333333 1696 88.990333 668 4509 3 chr4B.!!$F2 3841
13 TraesCS4A01G202400 chr4B 71798294 71803776 5482 False 844.333333 1659 89.024667 668 4509 3 chr4B.!!$F1 3841
14 TraesCS4A01G202400 chr4B 116036749 116039909 3160 False 720.333333 1404 90.006000 799 4224 3 chr4B.!!$F3 3425
15 TraesCS4A01G202400 chr1B 120041927 120043183 1256 False 1681.000000 1681 90.866000 1377 2630 1 chr1B.!!$F2 1253
16 TraesCS4A01G202400 chr1B 328132086 328132760 674 True 1059.000000 1059 94.963000 4508 5182 1 chr1B.!!$R1 674
17 TraesCS4A01G202400 chr4D 468381673 468382912 1239 True 1535.000000 1535 89.004000 1380 2630 1 chr4D.!!$R1 1250
18 TraesCS4A01G202400 chr4D 82145848 82147145 1297 False 830.500000 1164 90.223500 971 4014 2 chr4D.!!$F2 3043
19 TraesCS4A01G202400 chr4D 82230080 82230594 514 False 556.000000 556 86.822000 4014 4509 1 chr4D.!!$F1 495
20 TraesCS4A01G202400 chr7B 634577147 634578399 1252 False 1533.000000 1533 88.801000 1377 2630 1 chr7B.!!$F2 1253
21 TraesCS4A01G202400 chr7D 351686467 351687525 1058 True 1341.000000 1341 89.548000 1380 2438 1 chr7D.!!$R1 1058
22 TraesCS4A01G202400 chr7D 388650886 388651560 674 False 1026.000000 1026 94.074000 4508 5182 1 chr7D.!!$F2 674
23 TraesCS4A01G202400 chr7D 18033324 18035953 2629 True 626.000000 1258 88.609333 973 4188 3 chr7D.!!$R2 3215
24 TraesCS4A01G202400 chr7A 449575396 449576063 667 False 1037.000000 1037 94.627000 3 672 1 chr7A.!!$F1 669
25 TraesCS4A01G202400 chr7A 305695050 305695719 669 True 1033.000000 1033 94.478000 3 672 1 chr7A.!!$R2 669
26 TraesCS4A01G202400 chr7A 646886702 646887374 672 False 1020.000000 1020 94.056000 3 673 1 chr7A.!!$F2 670
27 TraesCS4A01G202400 chr7A 18087669 18089156 1487 True 848.000000 1230 88.160500 973 4194 2 chr7A.!!$R3 3221
28 TraesCS4A01G202400 chr7A 18553806 18554491 685 False 367.500000 398 87.542000 978 3411 2 chr7A.!!$F3 2433
29 TraesCS4A01G202400 chr3B 744357888 744358807 919 True 1230.000000 1230 90.889000 1714 2630 1 chr3B.!!$R2 916
30 TraesCS4A01G202400 chr3B 586719693 586720367 674 False 1020.000000 1020 93.926000 4508 5182 1 chr3B.!!$F2 674
31 TraesCS4A01G202400 chr2A 121811135 121811804 669 True 1072.000000 1072 95.522000 3 672 1 chr2A.!!$R1 669
32 TraesCS4A01G202400 chr2A 768737498 768738168 670 True 1050.000000 1050 94.815000 4508 5182 1 chr2A.!!$R2 674
33 TraesCS4A01G202400 chr2A 176763694 176764362 668 False 1035.000000 1035 94.619000 3 670 1 chr2A.!!$F1 667
34 TraesCS4A01G202400 chr5A 580196898 580198147 1249 False 1055.000000 1055 81.992000 1382 2630 1 chr5A.!!$F2 1248
35 TraesCS4A01G202400 chr5A 568791951 568792608 657 True 1038.000000 1038 95.144000 3 661 1 chr5A.!!$R1 658
36 TraesCS4A01G202400 chr5A 688248400 688249074 674 True 981.000000 981 92.889000 4508 5182 1 chr5A.!!$R2 674
37 TraesCS4A01G202400 chr1D 291796725 291797399 674 False 1048.000000 1048 94.667000 4508 5182 1 chr1D.!!$F1 674
38 TraesCS4A01G202400 chr3A 731456219 731456885 666 False 1033.000000 1033 94.603000 3 669 1 chr3A.!!$F1 666
39 TraesCS4A01G202400 chr1A 247979286 247979951 665 False 1031.000000 1031 94.603000 3 669 1 chr1A.!!$F1 666
40 TraesCS4A01G202400 chr6B 17942837 17944078 1241 True 1026.000000 1026 81.638000 1380 2634 1 chr6B.!!$R1 1254
41 TraesCS4A01G202400 chr6A 495114617 495115292 675 False 965.000000 965 92.456000 4508 5182 1 chr6A.!!$F2 674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 169 1.211703 TGCCTCAATTGGATTAGCCGA 59.788 47.619 5.42 0.0 40.66 5.54 F
956 3845 1.213296 ACAGTGAGAACACCCCACTT 58.787 50.000 0.00 0.0 46.99 3.16 F
1473 5546 1.244697 ACACACGCACACACCCAAAA 61.245 50.000 0.00 0.0 0.00 2.44 F
2264 6374 0.315251 CCTCCGATGAAGATAGCGCA 59.685 55.000 11.47 0.0 0.00 6.09 F
3469 10056 0.179108 CCAGCGCTTGTACTACCTCC 60.179 60.000 7.50 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1093 5148 0.033504 CACACCAAGTACGTGCTCCT 59.966 55.000 6.63 0.0 34.45 3.69 R
2257 6367 0.530650 CCCTGTCGTTCATGCGCTAT 60.531 55.000 9.73 0.0 0.00 2.97 R
3127 7662 0.313043 CGTACGGTAGCGGGATCAAT 59.687 55.000 19.72 0.0 0.00 2.57 R
3942 10541 1.153188 TCGTCATCGCCATTGCCAT 60.153 52.632 0.00 0.0 36.96 4.40 R
4369 10987 0.164217 TAAAACCGCGCATGTTCGTC 59.836 50.000 8.75 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 134 3.429085 AGCGCATTTTCATAAGCTTTCG 58.571 40.909 11.47 0.00 0.00 3.46
167 169 1.211703 TGCCTCAATTGGATTAGCCGA 59.788 47.619 5.42 0.00 40.66 5.54
335 337 7.823745 ATTATTTGCCTCATTCCGATAAACT 57.176 32.000 0.00 0.00 0.00 2.66
365 367 6.716865 AAATGCGATCAAAAATACGATTCG 57.283 33.333 4.14 4.14 0.00 3.34
463 466 5.786975 TGGGTCATGATACTGATGTCCATAT 59.213 40.000 0.00 0.00 32.48 1.78
469 472 8.873144 TCATGATACTGATGTCCATATCTTTCA 58.127 33.333 0.00 0.00 0.00 2.69
512 515 5.221422 CCATTTGGACACCTTTTAGCTGAAA 60.221 40.000 3.40 3.40 37.39 2.69
530 533 4.501071 TGAAATTCAACCTAGTACTCGGC 58.499 43.478 13.21 0.00 0.00 5.54
551 554 1.812686 AAGGTCAGGCGCGTTACTCA 61.813 55.000 13.47 0.00 0.00 3.41
707 738 9.522804 ACAAATTTGTCGTTAGATTTTTAAGCA 57.477 25.926 18.13 0.00 36.50 3.91
714 745 7.066404 TGTCGTTAGATTTTTAAGCATGGCATA 59.934 33.333 0.00 0.00 0.00 3.14
724 755 2.712709 AGCATGGCATATCTGATGCTC 58.287 47.619 0.00 1.27 46.79 4.26
741 772 1.956477 GCTCGGGATGGCAAATTATGT 59.044 47.619 0.00 0.00 0.00 2.29
746 777 3.631686 CGGGATGGCAAATTATGTTCTCA 59.368 43.478 0.00 0.00 0.00 3.27
751 782 2.479560 GGCAAATTATGTTCTCACGGGC 60.480 50.000 0.00 0.00 0.00 6.13
757 788 2.315925 ATGTTCTCACGGGCATGTAG 57.684 50.000 0.00 0.00 0.00 2.74
758 789 1.262417 TGTTCTCACGGGCATGTAGA 58.738 50.000 0.00 0.00 0.00 2.59
788 819 7.654520 CCTTCAACAAACATGACAATTCATTCT 59.345 33.333 0.00 0.00 40.79 2.40
795 826 4.098960 ACATGACAATTCATTCTGGGCATC 59.901 41.667 0.00 0.00 40.79 3.91
815 846 6.255020 GGCATCAGATTTGTCATGCTTAAAAG 59.745 38.462 9.03 0.00 41.25 2.27
827 2224 4.545823 TGCTTAAAAGTTTGACGTCAGG 57.454 40.909 19.11 0.00 0.00 3.86
833 2230 7.485595 GCTTAAAAGTTTGACGTCAGGTTTTTA 59.514 33.333 26.18 25.06 0.00 1.52
907 2306 4.042435 AGCCAAGCCTTAGGTACAACTTTA 59.958 41.667 0.00 0.00 0.00 1.85
910 2309 5.182570 CCAAGCCTTAGGTACAACTTTAACC 59.817 44.000 0.00 0.00 0.00 2.85
911 2310 5.571791 AGCCTTAGGTACAACTTTAACCA 57.428 39.130 0.00 0.00 35.64 3.67
935 3824 8.457261 CCAATGAAGCCAATAAATAGAGCTATC 58.543 37.037 0.00 0.00 32.39 2.08
945 3834 9.755804 CAATAAATAGAGCTATCAACAGTGAGA 57.244 33.333 0.00 0.00 37.14 3.27
956 3845 1.213296 ACAGTGAGAACACCCCACTT 58.787 50.000 0.00 0.00 46.99 3.16
957 3846 2.404559 ACAGTGAGAACACCCCACTTA 58.595 47.619 0.00 0.00 46.99 2.24
958 3847 2.775384 ACAGTGAGAACACCCCACTTAA 59.225 45.455 0.00 0.00 46.99 1.85
959 3848 3.201266 ACAGTGAGAACACCCCACTTAAA 59.799 43.478 0.00 0.00 46.99 1.52
960 3849 4.204012 CAGTGAGAACACCCCACTTAAAA 58.796 43.478 0.00 0.00 46.99 1.52
961 3850 4.642885 CAGTGAGAACACCCCACTTAAAAA 59.357 41.667 0.00 0.00 46.99 1.94
1005 3905 2.486191 GCATACTGGAGTGCTAATGGCT 60.486 50.000 0.00 0.00 42.39 4.75
1030 5085 3.340034 CTCGTTAACAAGGGCAATGGTA 58.660 45.455 6.39 0.00 0.00 3.25
1035 5090 5.336055 CGTTAACAAGGGCAATGGTATGAAA 60.336 40.000 6.39 0.00 0.00 2.69
1050 5105 4.142138 GGTATGAAAGTCCGAGTCATGAGT 60.142 45.833 1.67 1.67 34.01 3.41
1103 5158 1.272490 CAAGGAGACAAGGAGCACGTA 59.728 52.381 0.00 0.00 0.00 3.57
1174 5229 2.102420 TGGTCTGCATATACCCAAGACG 59.898 50.000 9.75 0.00 34.69 4.18
1291 5352 3.924013 ATCCCCGCACAGACCTCCA 62.924 63.158 0.00 0.00 0.00 3.86
1335 5396 3.893763 CGGAGCTCATCGTCGGCT 61.894 66.667 17.19 0.00 39.16 5.52
1354 5415 4.681978 GGCCGACGTTGCTCTGGT 62.682 66.667 10.32 0.00 0.00 4.00
1369 5442 1.342174 TCTGGTGGACGTGGACTTTAC 59.658 52.381 0.00 0.00 0.00 2.01
1385 5458 5.878669 GGACTTTACCACCACTATCGAAAAT 59.121 40.000 0.00 0.00 0.00 1.82
1394 5467 6.307155 CACCACTATCGAAAATGTCTTTCAC 58.693 40.000 0.00 0.00 0.00 3.18
1472 5545 1.675972 ACACACGCACACACCCAAA 60.676 52.632 0.00 0.00 0.00 3.28
1473 5546 1.244697 ACACACGCACACACCCAAAA 61.245 50.000 0.00 0.00 0.00 2.44
1578 5652 4.678044 CGCAAAGAGGAGAAGCTACATACA 60.678 45.833 0.00 0.00 0.00 2.29
1589 5663 1.734707 GCTACATACAACGCTCCGTGT 60.735 52.381 0.00 0.00 39.99 4.49
1641 5715 4.619227 CCGAAGTGCCACCACCGT 62.619 66.667 0.00 0.00 43.09 4.83
1657 5731 1.594833 CGTCCGACCCAAGGATCAA 59.405 57.895 0.00 0.00 40.30 2.57
1768 5843 5.561679 GAAGATAGAACAGGTTTTCACCCT 58.438 41.667 0.00 0.00 45.63 4.34
1915 5991 2.248248 CGCCCTAGAATCCATGACCTA 58.752 52.381 0.00 0.00 0.00 3.08
2127 6207 4.266070 GCTATCGGGCGCGAGACA 62.266 66.667 29.71 16.60 45.40 3.41
2257 6367 1.602237 GCCAACCCTCCGATGAAGA 59.398 57.895 0.00 0.00 0.00 2.87
2264 6374 0.315251 CCTCCGATGAAGATAGCGCA 59.685 55.000 11.47 0.00 0.00 6.09
2325 6435 2.182791 CGACAGGCAGACGCTGAT 59.817 61.111 10.46 0.00 38.60 2.90
2422 6532 4.747218 GAGACCTCGAGGGACAGT 57.253 61.111 34.04 14.10 40.27 3.55
2433 6543 2.363925 GGACAGTACCGAGCCCCT 60.364 66.667 0.00 0.00 0.00 4.79
2496 6608 2.444140 CCGTCCCCTCCCGAATCT 60.444 66.667 0.00 0.00 0.00 2.40
2514 6626 3.444805 GCGACCAGGACGAGCTCT 61.445 66.667 15.98 0.00 0.00 4.09
3048 7583 2.415608 GCTCGACGGGATCTGGTCA 61.416 63.158 0.00 4.24 32.74 4.02
3060 7595 4.242586 TGGTCACCCTCCCCGTCA 62.243 66.667 0.00 0.00 0.00 4.35
3094 7629 4.541648 CGGGAGGGGTCGGGAGAT 62.542 72.222 0.00 0.00 43.27 2.75
3095 7630 2.524640 GGGAGGGGTCGGGAGATC 60.525 72.222 0.00 0.00 43.27 2.75
3096 7631 2.609920 GGAGGGGTCGGGAGATCT 59.390 66.667 0.00 0.00 43.27 2.75
3097 7632 1.727215 GGGAGGGGTCGGGAGATCTA 61.727 65.000 0.00 0.00 43.27 1.98
3098 7633 0.540133 GGAGGGGTCGGGAGATCTAC 60.540 65.000 0.00 0.00 43.27 2.59
3099 7634 0.540133 GAGGGGTCGGGAGATCTACC 60.540 65.000 14.80 14.80 43.27 3.18
3100 7635 1.232216 GGGGTCGGGAGATCTACCA 59.768 63.158 24.24 8.35 43.27 3.25
3101 7636 0.398098 GGGGTCGGGAGATCTACCAA 60.398 60.000 24.24 1.57 43.27 3.67
3102 7637 1.718280 GGGTCGGGAGATCTACCAAT 58.282 55.000 24.24 0.00 43.27 3.16
3103 7638 1.619332 GGGTCGGGAGATCTACCAATC 59.381 57.143 24.24 5.56 43.27 2.67
3104 7639 2.317040 GGTCGGGAGATCTACCAATCA 58.683 52.381 24.24 1.21 43.27 2.57
3105 7640 2.297597 GGTCGGGAGATCTACCAATCAG 59.702 54.545 24.24 7.13 43.27 2.90
3106 7641 2.959707 GTCGGGAGATCTACCAATCAGT 59.040 50.000 24.24 0.00 43.27 3.41
3107 7642 3.385111 GTCGGGAGATCTACCAATCAGTT 59.615 47.826 24.24 0.00 43.27 3.16
3108 7643 4.030913 TCGGGAGATCTACCAATCAGTTT 58.969 43.478 24.24 0.00 31.13 2.66
3109 7644 5.068723 GTCGGGAGATCTACCAATCAGTTTA 59.931 44.000 24.24 0.00 43.27 2.01
3110 7645 5.659525 TCGGGAGATCTACCAATCAGTTTAA 59.340 40.000 24.24 0.00 31.13 1.52
3111 7646 5.986135 CGGGAGATCTACCAATCAGTTTAAG 59.014 44.000 24.24 0.00 31.13 1.85
3112 7647 6.183360 CGGGAGATCTACCAATCAGTTTAAGA 60.183 42.308 24.24 0.00 31.13 2.10
3113 7648 7.472100 CGGGAGATCTACCAATCAGTTTAAGAT 60.472 40.741 24.24 0.00 31.13 2.40
3114 7649 8.871125 GGGAGATCTACCAATCAGTTTAAGATA 58.129 37.037 20.04 0.00 32.35 1.98
3165 7708 2.579201 CGGCGATGTCCCTCTGTT 59.421 61.111 0.00 0.00 0.00 3.16
3168 7711 1.296715 GCGATGTCCCTCTGTTGGT 59.703 57.895 0.00 0.00 0.00 3.67
3169 7712 1.021390 GCGATGTCCCTCTGTTGGTG 61.021 60.000 0.00 0.00 0.00 4.17
3170 7713 1.021390 CGATGTCCCTCTGTTGGTGC 61.021 60.000 0.00 0.00 0.00 5.01
3171 7714 1.003355 ATGTCCCTCTGTTGGTGCG 60.003 57.895 0.00 0.00 0.00 5.34
3172 7715 2.358737 GTCCCTCTGTTGGTGCGG 60.359 66.667 0.00 0.00 0.00 5.69
3173 7716 4.329545 TCCCTCTGTTGGTGCGGC 62.330 66.667 0.00 0.00 0.00 6.53
3175 7718 4.335647 CCTCTGTTGGTGCGGCCT 62.336 66.667 0.00 0.00 38.35 5.19
3216 9786 4.704833 GGCGGCTTCTCTGTGGCA 62.705 66.667 0.00 0.00 0.00 4.92
3382 9961 1.381056 AGATGCAGGAGCTCCTCGT 60.381 57.895 33.06 25.48 46.65 4.18
3384 9963 0.747255 GATGCAGGAGCTCCTCGTTA 59.253 55.000 33.06 18.37 46.65 3.18
3429 10008 2.292267 GATCGCATGGTCAACATCCTT 58.708 47.619 0.00 0.00 37.84 3.36
3469 10056 0.179108 CCAGCGCTTGTACTACCTCC 60.179 60.000 7.50 0.00 0.00 4.30
3501 10088 1.830408 CTCCCGGCTCCGAGAGATT 60.830 63.158 13.61 0.00 45.13 2.40
3513 10103 1.537776 CGAGAGATTGCGAGCCAAGAT 60.538 52.381 0.00 0.00 36.76 2.40
3555 10154 2.551912 CCAGGCGGTGTTGTGGAAC 61.552 63.158 0.00 0.00 31.04 3.62
3699 10298 1.264749 TGTCCATCTTCGTCCTGGGG 61.265 60.000 0.00 0.00 0.00 4.96
3923 10522 2.104967 ACCTCGTTTCCGATGGACATA 58.895 47.619 7.32 0.00 43.27 2.29
3977 10577 4.868116 ACAACGTGCGGCAAGGGT 62.868 61.111 19.60 13.91 0.00 4.34
3993 10593 1.204146 GGGTCTATGCTCAGGGTTCA 58.796 55.000 0.00 0.00 0.00 3.18
4058 10658 3.959975 GCAAGCGTGTGGCCGAAA 61.960 61.111 0.00 0.00 45.17 3.46
4108 10708 3.016031 TGCGTATTTTCATGCCAGTCAT 58.984 40.909 0.00 0.00 35.31 3.06
4148 10748 2.975851 CAAGCTCAACGAAGCAATTGTC 59.024 45.455 7.40 0.00 45.00 3.18
4165 10765 0.249911 GTCAAGGACAACGACAGCCT 60.250 55.000 0.00 0.00 32.09 4.58
4245 10862 3.694043 TGCTGCTACACAAACTATGGA 57.306 42.857 0.00 0.00 0.00 3.41
4351 10969 7.052873 ACATCCAGATATGTTTCTTCTTCCTG 58.947 38.462 0.00 0.00 36.71 3.86
4387 11007 1.082366 GACGAACATGCGCGGTTTT 60.082 52.632 16.86 8.63 33.86 2.43
4399 11019 0.108041 GCGGTTTTAGTCGATCCCCA 60.108 55.000 0.00 0.00 0.00 4.96
4401 11021 1.648504 GGTTTTAGTCGATCCCCACG 58.351 55.000 0.00 0.00 0.00 4.94
4437 11057 0.249120 TACGGTGAGGCATTGACCTG 59.751 55.000 4.63 0.00 41.32 4.00
4439 11059 1.380302 GGTGAGGCATTGACCTGGT 59.620 57.895 0.00 0.00 41.32 4.00
4490 11110 2.091166 TGCGTCCCCCTTTCTATACCTA 60.091 50.000 0.00 0.00 0.00 3.08
4497 11117 3.499926 CCCCTTTCTATACCTAGCTCCGA 60.500 52.174 0.00 0.00 0.00 4.55
4521 11141 0.685097 TCCGACCCTTTCCTGTTCAG 59.315 55.000 0.00 0.00 0.00 3.02
4641 11262 2.487934 CCTTCTCCAGTATGCGGATTG 58.512 52.381 0.00 0.00 31.97 2.67
4719 11340 3.004024 GTTGTGCTTCCAACAGATGTG 57.996 47.619 8.84 0.00 43.32 3.21
4929 11550 1.766143 CGTATCGAGCCTTGGCAAGC 61.766 60.000 21.77 16.23 0.00 4.01
4955 11576 1.584380 GCTCTCCAAAGCAGCCTGTG 61.584 60.000 0.00 0.00 42.05 3.66
4987 11608 3.463704 TCAACTCATCCCTCTCTAGCCTA 59.536 47.826 0.00 0.00 0.00 3.93
5056 11677 0.904865 AGATCGCCACTGTTCAGGGA 60.905 55.000 3.41 0.00 0.00 4.20
5089 11710 1.371183 CGGTGAGGGAGACAAGCAA 59.629 57.895 0.00 0.00 0.00 3.91
5129 11750 2.165998 GGTCTGAAATCTGCAAGCCTT 58.834 47.619 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
132 134 4.829064 TGAGGCAAATAATATGGCGTTC 57.171 40.909 0.00 0.00 46.95 3.95
167 169 9.301153 GTTTGTATTTTCGATGCCATTTCTAAT 57.699 29.630 0.00 0.00 0.00 1.73
335 337 9.181805 TCGTATTTTTGATCGCATTTTTAAACA 57.818 25.926 0.00 0.00 0.00 2.83
463 466 5.235616 GGATTGCGATATACCGTTTGAAAGA 59.764 40.000 0.00 0.00 0.00 2.52
469 472 2.105134 TGGGGATTGCGATATACCGTTT 59.895 45.455 0.00 0.00 0.00 3.60
512 515 2.372264 TCGCCGAGTACTAGGTTGAAT 58.628 47.619 21.45 0.00 0.00 2.57
530 533 2.126228 TAACGCGCCTGACCTTCG 60.126 61.111 5.73 0.00 0.00 3.79
551 554 5.233083 TCTGATCACAACATGAACTTCCT 57.767 39.130 0.00 0.00 41.93 3.36
688 719 5.182190 TGCCATGCTTAAAAATCTAACGACA 59.818 36.000 0.00 0.00 0.00 4.35
691 722 8.292448 AGATATGCCATGCTTAAAAATCTAACG 58.708 33.333 0.00 0.00 0.00 3.18
707 738 1.065636 CCCGAGCATCAGATATGCCAT 60.066 52.381 6.36 0.00 45.59 4.40
714 745 1.374190 GCCATCCCGAGCATCAGAT 59.626 57.895 0.00 0.00 33.17 2.90
724 755 3.631686 TGAGAACATAATTTGCCATCCCG 59.368 43.478 0.00 0.00 0.00 5.14
741 772 3.531538 GAAATCTACATGCCCGTGAGAA 58.468 45.455 0.00 0.00 0.00 2.87
746 777 2.238646 TGAAGGAAATCTACATGCCCGT 59.761 45.455 0.00 0.00 0.00 5.28
751 782 8.298854 TCATGTTTGTTGAAGGAAATCTACATG 58.701 33.333 0.00 0.00 40.05 3.21
757 788 7.951530 ATTGTCATGTTTGTTGAAGGAAATC 57.048 32.000 0.00 0.00 0.00 2.17
758 789 7.986320 TGAATTGTCATGTTTGTTGAAGGAAAT 59.014 29.630 0.00 0.00 0.00 2.17
788 819 1.752498 GCATGACAAATCTGATGCCCA 59.248 47.619 0.00 0.00 36.08 5.36
795 826 8.482429 GTCAAACTTTTAAGCATGACAAATCTG 58.518 33.333 16.84 0.00 41.14 2.90
815 846 7.486870 AGAATGTTTAAAAACCTGACGTCAAAC 59.513 33.333 20.49 17.36 38.11 2.93
907 2306 6.608808 AGCTCTATTTATTGGCTTCATTGGTT 59.391 34.615 0.00 0.00 0.00 3.67
910 2309 9.006839 TGATAGCTCTATTTATTGGCTTCATTG 57.993 33.333 0.00 0.00 34.88 2.82
911 2310 9.578576 TTGATAGCTCTATTTATTGGCTTCATT 57.421 29.630 0.00 0.00 34.88 2.57
935 3824 1.134098 AGTGGGGTGTTCTCACTGTTG 60.134 52.381 0.00 0.00 43.41 3.33
983 3883 2.746142 GCCATTAGCACTCCAGTATGCA 60.746 50.000 0.00 0.00 44.59 3.96
1005 3905 0.978151 TGCCCTTGTTAACGAGGCTA 59.022 50.000 29.96 19.87 44.60 3.93
1009 3909 2.159382 ACCATTGCCCTTGTTAACGAG 58.841 47.619 15.04 15.04 0.00 4.18
1030 5085 3.428180 CGACTCATGACTCGGACTTTCAT 60.428 47.826 14.73 0.00 0.00 2.57
1090 5145 0.756903 ACCAAGTACGTGCTCCTTGT 59.243 50.000 6.63 0.00 35.02 3.16
1091 5146 1.148310 CACCAAGTACGTGCTCCTTG 58.852 55.000 6.63 9.05 36.26 3.61
1092 5147 0.756903 ACACCAAGTACGTGCTCCTT 59.243 50.000 6.63 0.00 34.45 3.36
1093 5148 0.033504 CACACCAAGTACGTGCTCCT 59.966 55.000 6.63 0.00 34.45 3.69
1094 5149 0.249741 ACACACCAAGTACGTGCTCC 60.250 55.000 6.63 0.00 34.45 4.70
1095 5150 1.137513 GACACACCAAGTACGTGCTC 58.862 55.000 6.63 0.00 34.45 4.26
1096 5151 0.249741 GGACACACCAAGTACGTGCT 60.250 55.000 0.00 0.00 38.79 4.40
1097 5152 0.531090 TGGACACACCAAGTACGTGC 60.531 55.000 2.94 0.00 46.75 5.34
1285 5346 0.250513 GCAAAGGATCTCGTGGAGGT 59.749 55.000 0.00 0.00 0.00 3.85
1291 5352 1.880027 GGTTGTTGCAAAGGATCTCGT 59.120 47.619 0.00 0.00 0.00 4.18
1335 5396 2.664851 CAGAGCAACGTCGGCCAA 60.665 61.111 2.24 0.00 0.00 4.52
1346 5407 2.523168 TCCACGTCCACCAGAGCA 60.523 61.111 0.00 0.00 0.00 4.26
1354 5415 3.993382 GTGGTAAAGTCCACGTCCA 57.007 52.632 0.10 0.00 46.38 4.02
1369 5442 5.411361 TGAAAGACATTTTCGATAGTGGTGG 59.589 40.000 3.63 0.00 37.40 4.61
1372 5445 5.163754 GGGTGAAAGACATTTTCGATAGTGG 60.164 44.000 3.63 0.00 37.40 4.00
1385 5458 3.512219 ATAAAACGGGGGTGAAAGACA 57.488 42.857 0.00 0.00 0.00 3.41
1394 5467 6.938030 TCTGTGCTTTATATATAAAACGGGGG 59.062 38.462 19.58 10.27 32.39 5.40
1472 5545 4.683832 GTTCAGCGTCTATGTATCCTGTT 58.316 43.478 0.00 0.00 0.00 3.16
1473 5546 3.243101 CGTTCAGCGTCTATGTATCCTGT 60.243 47.826 0.00 0.00 35.54 4.00
1504 5577 2.695666 GCTCTTGTAGTGCTAGGGATGA 59.304 50.000 0.00 0.00 32.42 2.92
1578 5652 3.454587 TTGGAGCACACGGAGCGTT 62.455 57.895 0.00 0.00 38.32 4.84
1634 5708 3.622826 CTTGGGTCGGACGGTGGT 61.623 66.667 1.43 0.00 0.00 4.16
1641 5715 0.546747 ACCTTGATCCTTGGGTCGGA 60.547 55.000 1.67 0.00 34.52 4.55
1704 5778 1.971357 AGCTCGTTCCCTTCTTGAAGA 59.029 47.619 11.53 0.00 0.00 2.87
1737 5811 2.623889 CCTGTTCTATCTTCGGACCGAT 59.376 50.000 19.12 5.46 35.23 4.18
1740 5814 3.889520 AACCTGTTCTATCTTCGGACC 57.110 47.619 0.00 0.00 0.00 4.46
1768 5843 2.571212 GGTGGCGATGAATATTGGTCA 58.429 47.619 0.00 0.00 0.00 4.02
1831 5906 2.203394 CTTGGTGCTGCCTGGTGT 60.203 61.111 0.00 0.00 38.35 4.16
1915 5991 4.101448 GCGGGTGAGGTGGCATCT 62.101 66.667 0.00 0.00 0.00 2.90
2097 6177 2.234143 CCGATAGCAGGATCTGACTCA 58.766 52.381 0.00 0.00 32.44 3.41
2257 6367 0.530650 CCCTGTCGTTCATGCGCTAT 60.531 55.000 9.73 0.00 0.00 2.97
2264 6374 1.938585 TTCCTCTCCCTGTCGTTCAT 58.061 50.000 0.00 0.00 0.00 2.57
2325 6435 4.329545 GGCGGTGGCTGGACTTCA 62.330 66.667 0.00 0.00 39.81 3.02
2350 6460 3.256960 ATGGCGGTGGTCTGGGTT 61.257 61.111 0.00 0.00 0.00 4.11
2496 6608 3.749064 GAGCTCGTCCTGGTCGCA 61.749 66.667 8.49 0.00 0.00 5.10
2615 6727 4.241555 GTGGGCGGCGGATCTCAT 62.242 66.667 9.78 0.00 0.00 2.90
2689 6801 4.643387 GTCCTGCTGGTTGGCGGT 62.643 66.667 9.73 0.00 36.91 5.68
2887 7336 3.376935 CTTCGGGCCAGAGCATCGT 62.377 63.158 4.39 0.00 42.67 3.73
2891 7349 2.665000 CTTCTTCGGGCCAGAGCA 59.335 61.111 4.39 0.00 42.56 4.26
3002 7532 2.685380 CCTCTTCCCCTGCTCCGT 60.685 66.667 0.00 0.00 0.00 4.69
3116 7651 7.119262 CGGTAGCGGGATCAATCTATTATTTTT 59.881 37.037 6.39 0.00 0.00 1.94
3117 7652 6.594159 CGGTAGCGGGATCAATCTATTATTTT 59.406 38.462 6.39 0.00 0.00 1.82
3118 7653 6.106673 CGGTAGCGGGATCAATCTATTATTT 58.893 40.000 6.39 0.00 0.00 1.40
3119 7654 5.187186 ACGGTAGCGGGATCAATCTATTATT 59.813 40.000 19.72 0.00 0.00 1.40
3120 7655 4.710375 ACGGTAGCGGGATCAATCTATTAT 59.290 41.667 19.72 0.00 0.00 1.28
3121 7656 4.084287 ACGGTAGCGGGATCAATCTATTA 58.916 43.478 19.72 0.00 0.00 0.98
3122 7657 2.897969 ACGGTAGCGGGATCAATCTATT 59.102 45.455 19.72 0.00 0.00 1.73
3123 7658 2.526432 ACGGTAGCGGGATCAATCTAT 58.474 47.619 19.72 0.00 0.00 1.98
3124 7659 1.991121 ACGGTAGCGGGATCAATCTA 58.009 50.000 19.72 0.00 0.00 1.98
3125 7660 1.612463 GTACGGTAGCGGGATCAATCT 59.388 52.381 19.72 0.00 0.00 2.40
3126 7661 1.665161 CGTACGGTAGCGGGATCAATC 60.665 57.143 19.72 0.00 0.00 2.67
3127 7662 0.313043 CGTACGGTAGCGGGATCAAT 59.687 55.000 19.72 0.00 0.00 2.57
3128 7663 1.727511 CCGTACGGTAGCGGGATCAA 61.728 60.000 26.39 0.00 43.85 2.57
3129 7664 2.188829 CCGTACGGTAGCGGGATCA 61.189 63.158 26.39 0.00 43.85 2.92
3154 7697 2.425592 CGCACCAACAGAGGGACA 59.574 61.111 0.00 0.00 0.00 4.02
3174 7717 1.831389 CGAACGACACCACCTGCAAG 61.831 60.000 0.00 0.00 0.00 4.01
3175 7718 1.885388 CGAACGACACCACCTGCAA 60.885 57.895 0.00 0.00 0.00 4.08
3216 9786 3.192630 AGGTGGTTGTGGCCCCAT 61.193 61.111 0.00 0.00 32.32 4.00
3269 9845 2.432628 CGAGCTCCGAAAAGCCGT 60.433 61.111 8.47 0.00 43.56 5.68
3321 9897 4.680537 AGGGAGCGGTCGTGGACT 62.681 66.667 8.77 0.00 32.47 3.85
3382 9961 3.192230 CGGCATGAACGCGGCTAA 61.192 61.111 12.47 0.00 0.00 3.09
3429 10008 2.100410 CAGCTCGCTTCGCTCGTA 59.900 61.111 0.00 0.00 35.07 3.43
3501 10088 1.219124 GTCTCCATCTTGGCTCGCA 59.781 57.895 0.00 0.00 37.47 5.10
3699 10298 2.680352 TCCTCCACGCTGTCCTCC 60.680 66.667 0.00 0.00 0.00 4.30
3724 10323 1.684049 CCTCCGGCAGAGACTTCCT 60.684 63.158 0.00 0.00 46.50 3.36
3747 10346 3.737172 GTGCACCATGGACGCCAC 61.737 66.667 21.47 14.80 35.80 5.01
3763 10362 1.709760 CGCGCATTGATCAGTTCGT 59.290 52.632 8.75 0.00 0.00 3.85
3789 10388 2.657237 CTCCTGGAAGCGGTCGTT 59.343 61.111 0.00 0.00 0.00 3.85
3862 10461 2.529744 GGGTAGCCCAGCCCTATGG 61.530 68.421 0.00 0.00 44.65 2.74
3942 10541 1.153188 TCGTCATCGCCATTGCCAT 60.153 52.632 0.00 0.00 36.96 4.40
3943 10542 2.106074 GTCGTCATCGCCATTGCCA 61.106 57.895 0.00 0.00 36.96 4.92
3973 10573 1.273838 TGAACCCTGAGCATAGACCCT 60.274 52.381 0.00 0.00 0.00 4.34
3977 10577 4.546674 TCTGTATGAACCCTGAGCATAGA 58.453 43.478 0.00 0.00 0.00 1.98
4071 10671 1.219124 GCAGCTCATCGGACTCCAA 59.781 57.895 0.00 0.00 0.00 3.53
4108 10708 1.605058 GAGACCAAGGTGCTCGGCTA 61.605 60.000 0.00 0.00 0.00 3.93
4148 10748 1.845809 GCAGGCTGTCGTTGTCCTTG 61.846 60.000 17.16 0.00 0.00 3.61
4165 10765 1.153647 CATCAGAACCGGCTACGCA 60.154 57.895 0.00 0.00 39.22 5.24
4245 10862 5.387600 CAGTTAACTGACGCATAGGTGCTT 61.388 45.833 28.17 0.00 46.59 3.91
4369 10987 0.164217 TAAAACCGCGCATGTTCGTC 59.836 50.000 8.75 0.00 0.00 4.20
4377 10997 1.079875 GGATCGACTAAAACCGCGCA 61.080 55.000 8.75 0.00 0.00 6.09
4387 11007 2.438975 ACGCGTGGGGATCGACTA 60.439 61.111 12.93 0.00 0.00 2.59
4449 11069 2.027073 TGTTCTGTCGTGGCATCGC 61.027 57.895 0.00 0.00 0.00 4.58
4490 11110 2.722201 GGTCGGAATGGTCGGAGCT 61.722 63.158 8.82 0.00 44.11 4.09
4497 11117 0.328258 CAGGAAAGGGTCGGAATGGT 59.672 55.000 0.00 0.00 0.00 3.55
4521 11141 4.760047 AGGCGTCGACCACCATGC 62.760 66.667 20.92 12.55 0.00 4.06
4566 11187 1.000233 CCCTTAATGTGGCCTGCCA 60.000 57.895 6.80 6.80 45.02 4.92
4719 11340 1.338020 CAAAGTTGACCTTGAGGCCAC 59.662 52.381 5.01 0.00 39.32 5.01
4738 11359 0.247460 CCATCACCTCGCTCTTGTCA 59.753 55.000 0.00 0.00 0.00 3.58
4929 11550 0.538057 TGCTTTGGAGAGCCACCAAG 60.538 55.000 0.00 0.00 45.94 3.61
4955 11576 0.654683 GATGAGTTGATGAGCACCGC 59.345 55.000 0.00 0.00 0.00 5.68
4987 11608 5.163281 AGAAGCTCATGATGAACAAGAGT 57.837 39.130 0.00 0.00 43.55 3.24
5018 11639 1.136774 CGTGATGAAGCGTCTCCGA 59.863 57.895 0.31 0.00 35.63 4.55
5056 11677 1.454295 ACCGGCCCAAAAGAAACGT 60.454 52.632 0.00 0.00 0.00 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.