Multiple sequence alignment - TraesCS4A01G201600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G201600 chr4A 100.000 3615 0 0 1 3615 490918189 490921803 0.000000e+00 6676
1 TraesCS4A01G201600 chr4A 94.444 144 8 0 383 526 229490616 229490473 4.700000e-54 222
2 TraesCS4A01G201600 chr4A 93.151 146 10 0 381 526 599465763 599465908 7.860000e-52 215
3 TraesCS4A01G201600 chr4A 77.640 322 57 9 1261 1570 490919362 490919680 7.970000e-42 182
4 TraesCS4A01G201600 chr4A 77.640 322 57 9 1174 1492 490919449 490919758 7.970000e-42 182
5 TraesCS4A01G201600 chr4A 85.714 119 15 2 1 117 198911682 198911564 1.360000e-24 124
6 TraesCS4A01G201600 chr4A 84.426 122 16 3 1 120 212810032 212810152 2.280000e-22 117
7 TraesCS4A01G201600 chr4D 94.631 2384 89 18 790 3145 81392479 81394851 0.000000e+00 3657
8 TraesCS4A01G201600 chr4D 93.235 473 28 3 3146 3615 81394942 81395413 0.000000e+00 693
9 TraesCS4A01G201600 chr4D 90.909 275 7 8 528 799 81391121 81391380 1.600000e-93 353
10 TraesCS4A01G201600 chr4D 79.091 330 48 8 1174 1497 81392953 81393267 1.320000e-49 207
11 TraesCS4A01G201600 chr4D 97.368 114 0 3 265 376 81391006 81391118 1.320000e-44 191
12 TraesCS4A01G201600 chr4D 77.950 322 56 9 1261 1570 81392866 81393184 1.710000e-43 187
13 TraesCS4A01G201600 chr4D 86.667 120 11 5 14 130 129771514 129771397 1.050000e-25 128
14 TraesCS4A01G201600 chr4B 87.645 1643 122 32 1261 2838 114951071 114952697 0.000000e+00 1834
15 TraesCS4A01G201600 chr4B 87.682 1031 61 29 523 1497 114950386 114951406 0.000000e+00 1140
16 TraesCS4A01G201600 chr4B 86.207 464 56 5 3151 3614 115061039 115061494 2.510000e-136 496
17 TraesCS4A01G201600 chr4B 87.578 322 31 8 2830 3146 115060685 115061002 7.380000e-97 364
18 TraesCS4A01G201600 chr4B 91.209 91 7 1 5 94 99751043 99751133 4.900000e-24 122
19 TraesCS4A01G201600 chr4B 83.459 133 16 6 1 130 655736337 655736466 6.340000e-23 119
20 TraesCS4A01G201600 chr4B 95.745 47 1 1 334 380 114950352 114950397 1.390000e-09 75
21 TraesCS4A01G201600 chr3B 80.289 761 129 13 1864 2609 27053993 27054747 4.080000e-154 555
22 TraesCS4A01G201600 chr3B 79.438 783 128 22 1864 2622 27202374 27201601 1.150000e-144 523
23 TraesCS4A01G201600 chr3B 78.516 768 135 15 1868 2617 14251301 14252056 9.080000e-131 477
24 TraesCS4A01G201600 chr3B 82.892 415 59 8 3149 3559 174492443 174492037 2.650000e-96 363
25 TraesCS4A01G201600 chr3B 76.599 688 137 18 1941 2617 27103774 27104448 1.230000e-94 357
26 TraesCS4A01G201600 chr7D 79.786 747 110 25 1864 2591 64667649 64668373 4.170000e-139 505
27 TraesCS4A01G201600 chr7D 86.923 130 16 1 1 129 104018237 104018108 1.050000e-30 145
28 TraesCS4A01G201600 chr7D 90.667 75 7 0 3541 3615 62262595 62262521 2.300000e-17 100
29 TraesCS4A01G201600 chr3A 84.615 416 56 8 3149 3559 154983423 154983835 1.210000e-109 407
30 TraesCS4A01G201600 chr7A 84.048 420 52 8 3149 3565 115792473 115792880 1.220000e-104 390
31 TraesCS4A01G201600 chr7A 83.133 415 63 7 3149 3559 669218515 669218104 4.410000e-99 372
32 TraesCS4A01G201600 chr7A 98.571 140 2 0 387 526 159690713 159690574 7.750000e-62 248
33 TraesCS4A01G201600 chr7A 90.541 74 7 0 3541 3614 660547988 660547915 8.260000e-17 99
34 TraesCS4A01G201600 chr2A 83.452 423 61 8 3140 3559 40473860 40474276 5.660000e-103 385
35 TraesCS4A01G201600 chr2A 86.667 120 15 1 1 119 760761019 760761138 8.140000e-27 132
36 TraesCS4A01G201600 chr5B 82.933 416 64 7 3149 3560 291282989 291282577 5.700000e-98 368
37 TraesCS4A01G201600 chr5B 95.205 146 7 0 381 526 493519050 493518905 7.810000e-57 231
38 TraesCS4A01G201600 chr5B 95.652 138 6 0 383 520 680361174 680361311 4.700000e-54 222
39 TraesCS4A01G201600 chr5B 90.541 74 7 0 3541 3614 275313521 275313448 8.260000e-17 99
40 TraesCS4A01G201600 chr5A 82.850 414 63 8 3149 3559 216564689 216564281 7.380000e-97 364
41 TraesCS4A01G201600 chr5A 94.444 144 8 0 383 526 523616998 523616855 4.700000e-54 222
42 TraesCS4A01G201600 chr3D 93.082 159 11 0 381 539 275613547 275613705 2.170000e-57 233
43 TraesCS4A01G201600 chr3D 93.919 148 8 1 383 529 175658178 175658325 4.700000e-54 222
44 TraesCS4A01G201600 chr3D 86.260 131 17 1 1 130 154542813 154542683 1.350000e-29 141
45 TraesCS4A01G201600 chr6B 95.205 146 7 0 381 526 493062728 493062583 7.810000e-57 231
46 TraesCS4A01G201600 chr7B 87.179 117 14 1 14 129 61851830 61851714 8.140000e-27 132
47 TraesCS4A01G201600 chr7B 90.667 75 7 0 3541 3615 697860933 697860859 2.300000e-17 100
48 TraesCS4A01G201600 chrUn 90.541 74 7 0 3541 3614 108822288 108822361 8.260000e-17 99
49 TraesCS4A01G201600 chr6D 90.541 74 7 0 3541 3614 452537558 452537485 8.260000e-17 99
50 TraesCS4A01G201600 chr1D 90.541 74 7 0 3541 3614 250735545 250735618 8.260000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G201600 chr4A 490918189 490921803 3614 False 2346.666667 6676 85.093333 1 3615 3 chr4A.!!$F3 3614
1 TraesCS4A01G201600 chr4D 81391006 81395413 4407 False 881.333333 3657 88.864000 265 3615 6 chr4D.!!$F1 3350
2 TraesCS4A01G201600 chr4B 114950352 114952697 2345 False 1016.333333 1834 90.357333 334 2838 3 chr4B.!!$F3 2504
3 TraesCS4A01G201600 chr4B 115060685 115061494 809 False 430.000000 496 86.892500 2830 3614 2 chr4B.!!$F4 784
4 TraesCS4A01G201600 chr3B 27053993 27054747 754 False 555.000000 555 80.289000 1864 2609 1 chr3B.!!$F2 745
5 TraesCS4A01G201600 chr3B 27201601 27202374 773 True 523.000000 523 79.438000 1864 2622 1 chr3B.!!$R1 758
6 TraesCS4A01G201600 chr3B 14251301 14252056 755 False 477.000000 477 78.516000 1868 2617 1 chr3B.!!$F1 749
7 TraesCS4A01G201600 chr3B 27103774 27104448 674 False 357.000000 357 76.599000 1941 2617 1 chr3B.!!$F3 676
8 TraesCS4A01G201600 chr7D 64667649 64668373 724 False 505.000000 505 79.786000 1864 2591 1 chr7D.!!$F1 727

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 510 0.028902 GTTCGTGTGGGCAAAGTGTC 59.971 55.0 0.0 0.0 0.00 3.67 F
523 526 0.039798 TGTCGTCCGCACAGTACTTC 60.040 55.0 0.0 0.0 0.00 3.01 F
664 678 0.109504 GCTCGTGGTCTCACACTCTC 60.110 60.0 0.0 0.0 43.79 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1370 2540 1.682849 GGTGCCATGGTGACCACTA 59.317 57.895 23.36 0.00 35.8 2.74 R
2465 3719 2.097038 CGTCGCCTTTCAGCTGGAG 61.097 63.158 15.13 12.11 0.0 3.86 R
2705 3961 1.182667 ATAGTAGCACACACGGAGCA 58.817 50.000 0.00 0.00 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 9.744468 AATTTAGTGATATAATTTTTGTCCCGC 57.256 29.630 0.00 0.00 0.00 6.13
44 45 5.767816 AGTGATATAATTTTTGTCCCGCC 57.232 39.130 0.00 0.00 0.00 6.13
45 46 4.274950 AGTGATATAATTTTTGTCCCGCCG 59.725 41.667 0.00 0.00 0.00 6.46
46 47 3.003897 TGATATAATTTTTGTCCCGCCGC 59.996 43.478 0.00 0.00 0.00 6.53
47 48 1.178276 ATAATTTTTGTCCCGCCGCA 58.822 45.000 0.00 0.00 0.00 5.69
48 49 0.523966 TAATTTTTGTCCCGCCGCAG 59.476 50.000 0.00 0.00 0.00 5.18
49 50 1.460273 AATTTTTGTCCCGCCGCAGT 61.460 50.000 0.00 0.00 0.00 4.40
50 51 1.862602 ATTTTTGTCCCGCCGCAGTC 61.863 55.000 0.00 0.00 0.00 3.51
61 62 4.361827 CGCAGTCGGTCTCGTTAG 57.638 61.111 0.00 0.00 37.69 2.34
62 63 1.500844 CGCAGTCGGTCTCGTTAGT 59.499 57.895 0.00 0.00 37.69 2.24
63 64 0.109873 CGCAGTCGGTCTCGTTAGTT 60.110 55.000 0.00 0.00 37.69 2.24
64 65 1.129251 CGCAGTCGGTCTCGTTAGTTA 59.871 52.381 0.00 0.00 37.69 2.24
65 66 2.413239 CGCAGTCGGTCTCGTTAGTTAA 60.413 50.000 0.00 0.00 37.69 2.01
66 67 3.568538 GCAGTCGGTCTCGTTAGTTAAA 58.431 45.455 0.00 0.00 37.69 1.52
67 68 4.171754 GCAGTCGGTCTCGTTAGTTAAAT 58.828 43.478 0.00 0.00 37.69 1.40
68 69 4.624452 GCAGTCGGTCTCGTTAGTTAAATT 59.376 41.667 0.00 0.00 37.69 1.82
69 70 5.119743 GCAGTCGGTCTCGTTAGTTAAATTT 59.880 40.000 0.00 0.00 37.69 1.82
70 71 6.308766 GCAGTCGGTCTCGTTAGTTAAATTTA 59.691 38.462 0.00 0.00 37.69 1.40
71 72 7.660959 CAGTCGGTCTCGTTAGTTAAATTTAC 58.339 38.462 0.00 0.00 37.69 2.01
72 73 6.524586 AGTCGGTCTCGTTAGTTAAATTTACG 59.475 38.462 0.00 0.61 37.69 3.18
73 74 5.799936 TCGGTCTCGTTAGTTAAATTTACGG 59.200 40.000 9.79 2.88 37.69 4.02
74 75 5.572896 CGGTCTCGTTAGTTAAATTTACGGT 59.427 40.000 9.79 0.00 33.37 4.83
75 76 6.237306 CGGTCTCGTTAGTTAAATTTACGGTC 60.237 42.308 9.79 2.84 33.37 4.79
76 77 6.586082 GGTCTCGTTAGTTAAATTTACGGTCA 59.414 38.462 9.79 0.00 33.37 4.02
77 78 7.116233 GGTCTCGTTAGTTAAATTTACGGTCAA 59.884 37.037 9.79 0.00 33.37 3.18
78 79 8.487176 GTCTCGTTAGTTAAATTTACGGTCAAA 58.513 33.333 9.79 0.00 33.37 2.69
79 80 8.702438 TCTCGTTAGTTAAATTTACGGTCAAAG 58.298 33.333 9.79 1.71 33.37 2.77
80 81 8.364129 TCGTTAGTTAAATTTACGGTCAAAGT 57.636 30.769 9.79 0.00 33.37 2.66
81 82 8.825745 TCGTTAGTTAAATTTACGGTCAAAGTT 58.174 29.630 9.79 0.00 33.37 2.66
82 83 9.095529 CGTTAGTTAAATTTACGGTCAAAGTTC 57.904 33.333 0.00 0.00 29.44 3.01
83 84 9.934190 GTTAGTTAAATTTACGGTCAAAGTTCA 57.066 29.630 0.00 0.00 29.44 3.18
86 87 9.673454 AGTTAAATTTACGGTCAAAGTTCAATC 57.327 29.630 0.00 0.00 29.44 2.67
87 88 9.673454 GTTAAATTTACGGTCAAAGTTCAATCT 57.327 29.630 0.00 0.00 29.44 2.40
88 89 9.887406 TTAAATTTACGGTCAAAGTTCAATCTC 57.113 29.630 0.00 0.00 29.44 2.75
89 90 7.504924 AATTTACGGTCAAAGTTCAATCTCA 57.495 32.000 0.00 0.00 0.00 3.27
90 91 6.539649 TTTACGGTCAAAGTTCAATCTCAG 57.460 37.500 0.00 0.00 0.00 3.35
91 92 4.336889 ACGGTCAAAGTTCAATCTCAGA 57.663 40.909 0.00 0.00 0.00 3.27
92 93 4.703897 ACGGTCAAAGTTCAATCTCAGAA 58.296 39.130 0.00 0.00 0.00 3.02
93 94 5.123227 ACGGTCAAAGTTCAATCTCAGAAA 58.877 37.500 0.00 0.00 0.00 2.52
94 95 5.588648 ACGGTCAAAGTTCAATCTCAGAAAA 59.411 36.000 0.00 0.00 0.00 2.29
95 96 6.263168 ACGGTCAAAGTTCAATCTCAGAAAAT 59.737 34.615 0.00 0.00 0.00 1.82
96 97 6.580041 CGGTCAAAGTTCAATCTCAGAAAATG 59.420 38.462 0.00 0.00 0.00 2.32
97 98 6.364435 GGTCAAAGTTCAATCTCAGAAAATGC 59.636 38.462 0.00 0.00 0.00 3.56
98 99 6.087291 GTCAAAGTTCAATCTCAGAAAATGCG 59.913 38.462 0.00 0.00 0.00 4.73
99 100 4.691860 AGTTCAATCTCAGAAAATGCGG 57.308 40.909 0.00 0.00 0.00 5.69
100 101 4.326826 AGTTCAATCTCAGAAAATGCGGA 58.673 39.130 0.00 0.00 0.00 5.54
101 102 4.154918 AGTTCAATCTCAGAAAATGCGGAC 59.845 41.667 0.00 0.00 0.00 4.79
102 103 3.673902 TCAATCTCAGAAAATGCGGACA 58.326 40.909 0.00 0.00 0.00 4.02
103 104 3.436704 TCAATCTCAGAAAATGCGGACAC 59.563 43.478 0.00 0.00 0.00 3.67
104 105 2.542020 TCTCAGAAAATGCGGACACA 57.458 45.000 0.00 0.00 0.00 3.72
105 106 2.143122 TCTCAGAAAATGCGGACACAC 58.857 47.619 0.00 0.00 0.00 3.82
106 107 2.146342 CTCAGAAAATGCGGACACACT 58.854 47.619 0.00 0.00 0.00 3.55
107 108 3.006430 TCTCAGAAAATGCGGACACACTA 59.994 43.478 0.00 0.00 0.00 2.74
108 109 3.064207 TCAGAAAATGCGGACACACTAC 58.936 45.455 0.00 0.00 0.00 2.73
109 110 2.805671 CAGAAAATGCGGACACACTACA 59.194 45.455 0.00 0.00 0.00 2.74
110 111 3.436704 CAGAAAATGCGGACACACTACAT 59.563 43.478 0.00 0.00 0.00 2.29
111 112 4.072131 AGAAAATGCGGACACACTACATT 58.928 39.130 0.00 0.00 32.53 2.71
112 113 3.829886 AAATGCGGACACACTACATTG 57.170 42.857 0.00 0.00 31.64 2.82
113 114 2.472695 ATGCGGACACACTACATTGT 57.527 45.000 0.00 0.00 0.00 2.71
123 124 3.399330 ACACTACATTGTGAAACGGAGG 58.601 45.455 0.00 0.00 42.39 4.30
124 125 3.070446 ACACTACATTGTGAAACGGAGGA 59.930 43.478 0.00 0.00 42.39 3.71
125 126 4.062293 CACTACATTGTGAAACGGAGGAA 58.938 43.478 0.00 0.00 42.39 3.36
126 127 4.152402 CACTACATTGTGAAACGGAGGAAG 59.848 45.833 0.00 0.00 42.39 3.46
127 128 3.208747 ACATTGTGAAACGGAGGAAGT 57.791 42.857 0.00 0.00 42.39 3.01
128 129 4.345859 ACATTGTGAAACGGAGGAAGTA 57.654 40.909 0.00 0.00 42.39 2.24
129 130 4.906618 ACATTGTGAAACGGAGGAAGTAT 58.093 39.130 0.00 0.00 42.39 2.12
130 131 4.935808 ACATTGTGAAACGGAGGAAGTATC 59.064 41.667 0.00 0.00 42.39 2.24
131 132 3.226346 TGTGAAACGGAGGAAGTATCG 57.774 47.619 0.00 0.00 42.39 2.92
132 133 2.094390 TGTGAAACGGAGGAAGTATCGG 60.094 50.000 0.00 0.00 42.39 4.18
133 134 1.479323 TGAAACGGAGGAAGTATCGGG 59.521 52.381 0.00 0.00 0.00 5.14
134 135 0.177373 AAACGGAGGAAGTATCGGGC 59.823 55.000 0.00 0.00 0.00 6.13
135 136 0.974010 AACGGAGGAAGTATCGGGCA 60.974 55.000 0.00 0.00 0.00 5.36
136 137 1.364171 CGGAGGAAGTATCGGGCAG 59.636 63.158 0.00 0.00 0.00 4.85
137 138 1.392710 CGGAGGAAGTATCGGGCAGT 61.393 60.000 0.00 0.00 0.00 4.40
138 139 1.700955 GGAGGAAGTATCGGGCAGTA 58.299 55.000 0.00 0.00 0.00 2.74
139 140 1.340568 GGAGGAAGTATCGGGCAGTAC 59.659 57.143 0.00 0.00 0.00 2.73
140 141 1.340568 GAGGAAGTATCGGGCAGTACC 59.659 57.143 0.00 0.00 37.93 3.34
141 142 1.063114 AGGAAGTATCGGGCAGTACCT 60.063 52.381 0.00 0.00 39.10 3.08
143 144 1.068741 GAAGTATCGGGCAGTACCTGG 59.931 57.143 0.00 0.00 46.01 4.45
153 154 3.698029 GCAGTACCTGGCATATGTTTG 57.302 47.619 4.29 0.00 31.21 2.93
154 155 3.016736 GCAGTACCTGGCATATGTTTGT 58.983 45.455 4.29 0.12 31.21 2.83
155 156 3.443681 GCAGTACCTGGCATATGTTTGTT 59.556 43.478 4.29 0.00 31.21 2.83
156 157 4.082245 GCAGTACCTGGCATATGTTTGTTT 60.082 41.667 4.29 0.00 31.21 2.83
157 158 5.566627 GCAGTACCTGGCATATGTTTGTTTT 60.567 40.000 4.29 0.00 31.21 2.43
158 159 5.863397 CAGTACCTGGCATATGTTTGTTTTG 59.137 40.000 4.29 0.00 0.00 2.44
159 160 3.663025 ACCTGGCATATGTTTGTTTTGC 58.337 40.909 4.29 0.00 0.00 3.68
160 161 3.324556 ACCTGGCATATGTTTGTTTTGCT 59.675 39.130 4.29 0.00 33.86 3.91
161 162 4.202346 ACCTGGCATATGTTTGTTTTGCTT 60.202 37.500 4.29 0.00 33.86 3.91
162 163 4.152759 CCTGGCATATGTTTGTTTTGCTTG 59.847 41.667 4.29 0.00 33.86 4.01
163 164 4.953667 TGGCATATGTTTGTTTTGCTTGA 58.046 34.783 4.29 0.00 33.86 3.02
164 165 4.989797 TGGCATATGTTTGTTTTGCTTGAG 59.010 37.500 4.29 0.00 33.86 3.02
165 166 4.143052 GGCATATGTTTGTTTTGCTTGAGC 60.143 41.667 4.29 0.00 42.50 4.26
166 167 4.687483 GCATATGTTTGTTTTGCTTGAGCT 59.313 37.500 4.29 0.00 42.66 4.09
167 168 5.164022 GCATATGTTTGTTTTGCTTGAGCTC 60.164 40.000 6.82 6.82 42.66 4.09
168 169 3.865011 TGTTTGTTTTGCTTGAGCTCA 57.135 38.095 13.74 13.74 42.66 4.26
169 170 3.510719 TGTTTGTTTTGCTTGAGCTCAC 58.489 40.909 18.03 6.65 42.66 3.51
170 171 3.056962 TGTTTGTTTTGCTTGAGCTCACA 60.057 39.130 18.03 9.66 42.66 3.58
171 172 3.425577 TTGTTTTGCTTGAGCTCACAG 57.574 42.857 18.03 17.25 42.66 3.66
172 173 2.642427 TGTTTTGCTTGAGCTCACAGA 58.358 42.857 18.03 4.57 42.66 3.41
173 174 3.016031 TGTTTTGCTTGAGCTCACAGAA 58.984 40.909 18.03 10.89 42.66 3.02
174 175 3.443329 TGTTTTGCTTGAGCTCACAGAAA 59.557 39.130 18.03 14.59 42.66 2.52
175 176 4.098349 TGTTTTGCTTGAGCTCACAGAAAT 59.902 37.500 18.03 0.00 42.66 2.17
176 177 5.299028 TGTTTTGCTTGAGCTCACAGAAATA 59.701 36.000 18.03 10.16 42.66 1.40
177 178 6.016024 TGTTTTGCTTGAGCTCACAGAAATAT 60.016 34.615 18.03 0.00 42.66 1.28
178 179 5.556355 TTGCTTGAGCTCACAGAAATATG 57.444 39.130 18.03 0.00 42.66 1.78
179 180 4.835678 TGCTTGAGCTCACAGAAATATGA 58.164 39.130 18.03 0.00 42.66 2.15
180 181 4.633126 TGCTTGAGCTCACAGAAATATGAC 59.367 41.667 18.03 3.11 42.66 3.06
181 182 4.874966 GCTTGAGCTCACAGAAATATGACT 59.125 41.667 18.03 0.00 38.21 3.41
182 183 5.353678 GCTTGAGCTCACAGAAATATGACTT 59.646 40.000 18.03 0.00 38.21 3.01
183 184 6.675002 GCTTGAGCTCACAGAAATATGACTTG 60.675 42.308 18.03 0.00 38.21 3.16
184 185 4.633126 TGAGCTCACAGAAATATGACTTGC 59.367 41.667 13.74 0.00 0.00 4.01
185 186 4.841422 AGCTCACAGAAATATGACTTGCT 58.159 39.130 0.00 0.00 0.00 3.91
186 187 4.874966 AGCTCACAGAAATATGACTTGCTC 59.125 41.667 0.00 0.00 0.00 4.26
187 188 4.034975 GCTCACAGAAATATGACTTGCTCC 59.965 45.833 0.00 0.00 0.00 4.70
188 189 4.183865 TCACAGAAATATGACTTGCTCCG 58.816 43.478 0.00 0.00 0.00 4.63
189 190 3.935203 CACAGAAATATGACTTGCTCCGT 59.065 43.478 0.00 0.00 0.00 4.69
190 191 5.105513 TCACAGAAATATGACTTGCTCCGTA 60.106 40.000 0.00 0.00 0.00 4.02
191 192 5.233050 CACAGAAATATGACTTGCTCCGTAG 59.767 44.000 0.00 0.00 0.00 3.51
202 203 2.656560 GCTCCGTAGCTTCTCTTTCA 57.343 50.000 0.00 0.00 45.85 2.69
203 204 2.960819 GCTCCGTAGCTTCTCTTTCAA 58.039 47.619 0.00 0.00 45.85 2.69
204 205 3.326747 GCTCCGTAGCTTCTCTTTCAAA 58.673 45.455 0.00 0.00 45.85 2.69
205 206 3.935828 GCTCCGTAGCTTCTCTTTCAAAT 59.064 43.478 0.00 0.00 45.85 2.32
206 207 4.393371 GCTCCGTAGCTTCTCTTTCAAATT 59.607 41.667 0.00 0.00 45.85 1.82
207 208 5.106515 GCTCCGTAGCTTCTCTTTCAAATTT 60.107 40.000 0.00 0.00 45.85 1.82
208 209 6.568653 GCTCCGTAGCTTCTCTTTCAAATTTT 60.569 38.462 0.00 0.00 45.85 1.82
209 210 6.899114 TCCGTAGCTTCTCTTTCAAATTTTC 58.101 36.000 0.00 0.00 0.00 2.29
210 211 6.485313 TCCGTAGCTTCTCTTTCAAATTTTCA 59.515 34.615 0.00 0.00 0.00 2.69
211 212 6.798959 CCGTAGCTTCTCTTTCAAATTTTCAG 59.201 38.462 0.00 0.00 0.00 3.02
212 213 7.355778 CGTAGCTTCTCTTTCAAATTTTCAGT 58.644 34.615 0.00 0.00 0.00 3.41
213 214 7.857885 CGTAGCTTCTCTTTCAAATTTTCAGTT 59.142 33.333 0.00 0.00 0.00 3.16
214 215 9.521503 GTAGCTTCTCTTTCAAATTTTCAGTTT 57.478 29.630 0.00 0.00 0.00 2.66
215 216 8.640091 AGCTTCTCTTTCAAATTTTCAGTTTC 57.360 30.769 0.00 0.00 0.00 2.78
216 217 8.253113 AGCTTCTCTTTCAAATTTTCAGTTTCA 58.747 29.630 0.00 0.00 0.00 2.69
217 218 8.538039 GCTTCTCTTTCAAATTTTCAGTTTCAG 58.462 33.333 0.00 0.00 0.00 3.02
218 219 9.793252 CTTCTCTTTCAAATTTTCAGTTTCAGA 57.207 29.630 0.00 0.00 0.00 3.27
219 220 9.793252 TTCTCTTTCAAATTTTCAGTTTCAGAG 57.207 29.630 0.00 0.00 0.00 3.35
220 221 7.917505 TCTCTTTCAAATTTTCAGTTTCAGAGC 59.082 33.333 0.00 0.00 0.00 4.09
221 222 7.775120 TCTTTCAAATTTTCAGTTTCAGAGCT 58.225 30.769 0.00 0.00 0.00 4.09
222 223 8.253113 TCTTTCAAATTTTCAGTTTCAGAGCTT 58.747 29.630 0.00 0.00 0.00 3.74
223 224 8.776376 TTTCAAATTTTCAGTTTCAGAGCTTT 57.224 26.923 0.00 0.00 0.00 3.51
224 225 7.760131 TCAAATTTTCAGTTTCAGAGCTTTG 57.240 32.000 0.00 0.00 0.00 2.77
225 226 7.322664 TCAAATTTTCAGTTTCAGAGCTTTGT 58.677 30.769 3.90 0.00 0.00 2.83
226 227 8.465999 TCAAATTTTCAGTTTCAGAGCTTTGTA 58.534 29.630 3.90 0.00 0.00 2.41
227 228 9.086336 CAAATTTTCAGTTTCAGAGCTTTGTAA 57.914 29.630 3.90 0.00 0.00 2.41
228 229 9.822185 AAATTTTCAGTTTCAGAGCTTTGTAAT 57.178 25.926 3.90 0.00 0.00 1.89
229 230 9.822185 AATTTTCAGTTTCAGAGCTTTGTAATT 57.178 25.926 3.90 0.00 0.00 1.40
230 231 8.856490 TTTTCAGTTTCAGAGCTTTGTAATTC 57.144 30.769 3.90 0.00 0.00 2.17
231 232 7.566760 TTCAGTTTCAGAGCTTTGTAATTCA 57.433 32.000 3.90 0.00 0.00 2.57
232 233 6.959361 TCAGTTTCAGAGCTTTGTAATTCAC 58.041 36.000 3.90 0.00 0.00 3.18
233 234 5.848036 CAGTTTCAGAGCTTTGTAATTCACG 59.152 40.000 3.90 0.00 0.00 4.35
234 235 4.404507 TTCAGAGCTTTGTAATTCACGC 57.595 40.909 3.90 0.00 0.00 5.34
235 236 3.664107 TCAGAGCTTTGTAATTCACGCT 58.336 40.909 3.90 0.00 36.30 5.07
236 237 4.816392 TCAGAGCTTTGTAATTCACGCTA 58.184 39.130 3.90 0.00 34.59 4.26
237 238 5.419542 TCAGAGCTTTGTAATTCACGCTAT 58.580 37.500 3.90 0.00 34.59 2.97
238 239 6.569780 TCAGAGCTTTGTAATTCACGCTATA 58.430 36.000 3.90 0.00 34.59 1.31
239 240 6.475727 TCAGAGCTTTGTAATTCACGCTATAC 59.524 38.462 3.90 0.00 34.59 1.47
240 241 6.255670 CAGAGCTTTGTAATTCACGCTATACA 59.744 38.462 0.00 0.00 34.59 2.29
241 242 6.255887 AGAGCTTTGTAATTCACGCTATACAC 59.744 38.462 0.00 0.00 34.59 2.90
242 243 6.106673 AGCTTTGTAATTCACGCTATACACT 58.893 36.000 0.00 0.00 33.31 3.55
243 244 6.036083 AGCTTTGTAATTCACGCTATACACTG 59.964 38.462 0.00 0.00 33.31 3.66
244 245 6.183360 GCTTTGTAATTCACGCTATACACTGT 60.183 38.462 0.00 0.00 0.00 3.55
245 246 6.880822 TTGTAATTCACGCTATACACTGTC 57.119 37.500 0.00 0.00 0.00 3.51
246 247 5.956642 TGTAATTCACGCTATACACTGTCA 58.043 37.500 0.00 0.00 0.00 3.58
247 248 6.569780 TGTAATTCACGCTATACACTGTCAT 58.430 36.000 0.00 0.00 0.00 3.06
248 249 7.039270 TGTAATTCACGCTATACACTGTCATT 58.961 34.615 0.00 0.00 0.00 2.57
249 250 5.973651 ATTCACGCTATACACTGTCATTG 57.026 39.130 0.00 0.00 0.00 2.82
250 251 4.712122 TCACGCTATACACTGTCATTGA 57.288 40.909 0.00 0.00 0.00 2.57
251 252 4.672409 TCACGCTATACACTGTCATTGAG 58.328 43.478 0.00 0.00 0.00 3.02
252 253 3.243877 CACGCTATACACTGTCATTGAGC 59.756 47.826 0.00 0.00 0.00 4.26
253 254 3.131223 ACGCTATACACTGTCATTGAGCT 59.869 43.478 0.00 0.00 0.00 4.09
254 255 3.488678 CGCTATACACTGTCATTGAGCTG 59.511 47.826 0.00 0.00 0.00 4.24
255 256 4.686972 GCTATACACTGTCATTGAGCTGA 58.313 43.478 0.00 0.00 0.00 4.26
256 257 5.111989 GCTATACACTGTCATTGAGCTGAA 58.888 41.667 0.00 0.00 0.00 3.02
257 258 5.582269 GCTATACACTGTCATTGAGCTGAAA 59.418 40.000 0.00 0.00 0.00 2.69
258 259 6.259608 GCTATACACTGTCATTGAGCTGAAAT 59.740 38.462 0.00 0.00 0.00 2.17
259 260 4.761235 ACACTGTCATTGAGCTGAAATG 57.239 40.909 11.04 11.04 36.54 2.32
260 261 4.392047 ACACTGTCATTGAGCTGAAATGA 58.608 39.130 14.57 14.57 40.77 2.57
261 262 5.008331 ACACTGTCATTGAGCTGAAATGAT 58.992 37.500 19.30 6.23 43.81 2.45
262 263 6.175471 ACACTGTCATTGAGCTGAAATGATA 58.825 36.000 19.30 16.53 43.81 2.15
263 264 6.827251 ACACTGTCATTGAGCTGAAATGATAT 59.173 34.615 19.30 9.27 43.81 1.63
380 383 1.730064 GAGACGATCGAGCTAGCTAGG 59.270 57.143 24.34 13.09 0.00 3.02
381 384 0.167251 GACGATCGAGCTAGCTAGGC 59.833 60.000 24.34 13.91 0.00 3.93
382 385 0.250553 ACGATCGAGCTAGCTAGGCT 60.251 55.000 24.34 18.14 43.41 4.58
383 386 0.167908 CGATCGAGCTAGCTAGGCTG 59.832 60.000 19.38 6.96 40.10 4.85
384 387 0.109319 GATCGAGCTAGCTAGGCTGC 60.109 60.000 19.38 8.70 40.10 5.25
385 388 0.539438 ATCGAGCTAGCTAGGCTGCT 60.539 55.000 19.38 13.59 42.33 4.24
386 389 0.108774 TCGAGCTAGCTAGGCTGCTA 59.891 55.000 19.38 14.87 40.78 3.49
387 390 1.173043 CGAGCTAGCTAGGCTGCTAT 58.827 55.000 19.38 5.75 43.54 2.97
388 391 2.027100 TCGAGCTAGCTAGGCTGCTATA 60.027 50.000 19.38 3.11 43.54 1.31
389 392 2.096819 CGAGCTAGCTAGGCTGCTATAC 59.903 54.545 19.38 12.12 43.54 1.47
390 393 3.085533 GAGCTAGCTAGGCTGCTATACA 58.914 50.000 19.38 0.81 43.54 2.29
391 394 2.823154 AGCTAGCTAGGCTGCTATACAC 59.177 50.000 17.69 0.96 43.54 2.90
392 395 2.558795 GCTAGCTAGGCTGCTATACACA 59.441 50.000 22.10 0.00 43.54 3.72
393 396 3.612955 GCTAGCTAGGCTGCTATACACAC 60.613 52.174 22.10 0.00 43.54 3.82
394 397 1.338337 AGCTAGGCTGCTATACACACG 59.662 52.381 9.26 0.00 42.10 4.49
395 398 1.337071 GCTAGGCTGCTATACACACGA 59.663 52.381 0.00 0.00 0.00 4.35
396 399 2.859032 GCTAGGCTGCTATACACACGAC 60.859 54.545 0.00 0.00 0.00 4.34
397 400 1.182667 AGGCTGCTATACACACGACA 58.817 50.000 0.00 0.00 0.00 4.35
398 401 1.548719 AGGCTGCTATACACACGACAA 59.451 47.619 0.00 0.00 0.00 3.18
399 402 1.927174 GGCTGCTATACACACGACAAG 59.073 52.381 0.00 0.00 0.00 3.16
400 403 2.416836 GGCTGCTATACACACGACAAGA 60.417 50.000 0.00 0.00 0.00 3.02
401 404 3.448686 GCTGCTATACACACGACAAGAT 58.551 45.455 0.00 0.00 0.00 2.40
402 405 3.865745 GCTGCTATACACACGACAAGATT 59.134 43.478 0.00 0.00 0.00 2.40
403 406 4.259970 GCTGCTATACACACGACAAGATTG 60.260 45.833 0.00 0.00 0.00 2.67
404 407 4.180817 TGCTATACACACGACAAGATTGG 58.819 43.478 0.00 0.00 0.00 3.16
405 408 4.081917 TGCTATACACACGACAAGATTGGA 60.082 41.667 0.00 0.00 0.00 3.53
406 409 4.267928 GCTATACACACGACAAGATTGGAC 59.732 45.833 0.00 0.00 0.00 4.02
407 410 1.497991 ACACACGACAAGATTGGACG 58.502 50.000 10.96 10.96 37.79 4.79
408 411 1.067974 ACACACGACAAGATTGGACGA 59.932 47.619 16.67 0.00 36.50 4.20
409 412 2.288825 ACACACGACAAGATTGGACGAT 60.289 45.455 16.67 6.06 36.50 3.73
410 413 2.345641 CACACGACAAGATTGGACGATC 59.654 50.000 16.67 0.00 36.50 3.69
411 414 2.231478 ACACGACAAGATTGGACGATCT 59.769 45.455 16.67 0.00 37.99 2.75
412 415 3.254060 CACGACAAGATTGGACGATCTT 58.746 45.455 16.67 8.64 44.94 2.40
413 416 3.679980 CACGACAAGATTGGACGATCTTT 59.320 43.478 11.24 4.93 42.24 2.52
414 417 3.679980 ACGACAAGATTGGACGATCTTTG 59.320 43.478 11.24 9.77 42.24 2.77
415 418 3.062639 CGACAAGATTGGACGATCTTTGG 59.937 47.826 11.24 5.41 42.24 3.28
416 419 4.253685 GACAAGATTGGACGATCTTTGGA 58.746 43.478 11.24 0.00 42.24 3.53
417 420 4.003648 ACAAGATTGGACGATCTTTGGAC 58.996 43.478 11.24 0.00 42.24 4.02
418 421 2.893637 AGATTGGACGATCTTTGGACG 58.106 47.619 0.00 0.00 32.54 4.79
419 422 2.496070 AGATTGGACGATCTTTGGACGA 59.504 45.455 0.00 0.00 32.54 4.20
420 423 3.133003 AGATTGGACGATCTTTGGACGAT 59.867 43.478 0.00 0.00 32.54 3.73
421 424 2.293677 TGGACGATCTTTGGACGATG 57.706 50.000 0.00 0.00 0.00 3.84
422 425 0.931005 GGACGATCTTTGGACGATGC 59.069 55.000 0.00 0.00 0.00 3.91
423 426 1.640428 GACGATCTTTGGACGATGCA 58.360 50.000 0.00 0.00 0.00 3.96
424 427 1.590238 GACGATCTTTGGACGATGCAG 59.410 52.381 0.00 0.00 0.00 4.41
425 428 0.302890 CGATCTTTGGACGATGCAGC 59.697 55.000 0.00 0.00 0.00 5.25
426 429 1.372582 GATCTTTGGACGATGCAGCA 58.627 50.000 1.53 0.00 0.00 4.41
427 430 1.063174 GATCTTTGGACGATGCAGCAC 59.937 52.381 1.53 0.00 0.00 4.40
428 431 0.250252 TCTTTGGACGATGCAGCACA 60.250 50.000 1.53 0.00 0.00 4.57
429 432 0.806868 CTTTGGACGATGCAGCACAT 59.193 50.000 1.53 0.00 43.54 3.21
436 439 4.213666 ATGCAGCACATCTGACCG 57.786 55.556 0.00 0.00 45.72 4.79
437 440 1.297689 ATGCAGCACATCTGACCGT 59.702 52.632 0.00 0.00 45.72 4.83
438 441 0.536724 ATGCAGCACATCTGACCGTA 59.463 50.000 0.00 0.00 45.72 4.02
439 442 0.389817 TGCAGCACATCTGACCGTAC 60.390 55.000 0.00 0.00 45.72 3.67
440 443 0.389817 GCAGCACATCTGACCGTACA 60.390 55.000 0.00 0.00 45.72 2.90
441 444 1.740380 GCAGCACATCTGACCGTACAT 60.740 52.381 0.00 0.00 45.72 2.29
442 445 2.481276 GCAGCACATCTGACCGTACATA 60.481 50.000 0.00 0.00 45.72 2.29
443 446 3.116300 CAGCACATCTGACCGTACATAC 58.884 50.000 0.00 0.00 45.72 2.39
444 447 4.332202 CAGCACATCTGACCGTACATACG 61.332 52.174 4.43 4.43 45.72 3.06
448 451 2.032924 CATCTGACCGTACATACGCAGA 59.967 50.000 18.01 18.01 45.59 4.26
449 452 2.290916 ATCTGACCGTACATACGCAGAG 59.709 50.000 19.47 9.95 45.13 3.35
450 453 5.390218 ATCTGACCGTACATACGCAGAGC 62.390 52.174 19.47 4.93 45.13 4.09
455 458 3.021355 CGTACATACGCAGAGCAAAAC 57.979 47.619 0.00 0.00 43.14 2.43
456 459 2.222729 CGTACATACGCAGAGCAAAACC 60.223 50.000 0.00 0.00 43.14 3.27
457 460 2.185004 ACATACGCAGAGCAAAACCT 57.815 45.000 0.00 0.00 0.00 3.50
458 461 1.806542 ACATACGCAGAGCAAAACCTG 59.193 47.619 0.00 0.00 0.00 4.00
459 462 1.131126 CATACGCAGAGCAAAACCTGG 59.869 52.381 0.00 0.00 0.00 4.45
460 463 0.394938 TACGCAGAGCAAAACCTGGA 59.605 50.000 0.00 0.00 0.00 3.86
461 464 0.250901 ACGCAGAGCAAAACCTGGAT 60.251 50.000 0.00 0.00 0.00 3.41
462 465 0.169672 CGCAGAGCAAAACCTGGATG 59.830 55.000 0.00 0.00 0.00 3.51
463 466 0.108945 GCAGAGCAAAACCTGGATGC 60.109 55.000 0.00 8.22 40.34 3.91
464 467 1.250328 CAGAGCAAAACCTGGATGCA 58.750 50.000 19.97 0.00 42.45 3.96
465 468 1.068055 CAGAGCAAAACCTGGATGCAC 60.068 52.381 19.97 15.53 42.45 4.57
466 469 0.244721 GAGCAAAACCTGGATGCACC 59.755 55.000 19.97 11.14 42.45 5.01
467 470 1.080569 GCAAAACCTGGATGCACCG 60.081 57.895 15.37 0.00 42.61 4.94
468 471 1.805428 GCAAAACCTGGATGCACCGT 61.805 55.000 15.37 0.00 42.61 4.83
469 472 0.240945 CAAAACCTGGATGCACCGTC 59.759 55.000 0.00 0.00 42.61 4.79
470 473 0.179004 AAAACCTGGATGCACCGTCA 60.179 50.000 0.00 0.00 42.61 4.35
471 474 0.179004 AAACCTGGATGCACCGTCAA 60.179 50.000 0.00 0.00 42.61 3.18
472 475 0.038166 AACCTGGATGCACCGTCAAT 59.962 50.000 0.00 0.00 42.61 2.57
473 476 0.392998 ACCTGGATGCACCGTCAATC 60.393 55.000 0.00 0.00 42.61 2.67
474 477 0.392863 CCTGGATGCACCGTCAATCA 60.393 55.000 0.00 0.00 42.61 2.57
475 478 1.671979 CTGGATGCACCGTCAATCAT 58.328 50.000 0.00 0.00 42.61 2.45
476 479 1.600957 CTGGATGCACCGTCAATCATC 59.399 52.381 0.00 0.00 42.61 2.92
477 480 0.947244 GGATGCACCGTCAATCATCC 59.053 55.000 4.59 4.59 45.39 3.51
478 481 0.583438 GATGCACCGTCAATCATCCG 59.417 55.000 0.00 0.00 31.62 4.18
479 482 0.107703 ATGCACCGTCAATCATCCGT 60.108 50.000 0.00 0.00 0.00 4.69
480 483 0.739462 TGCACCGTCAATCATCCGTC 60.739 55.000 0.00 0.00 0.00 4.79
481 484 1.752501 GCACCGTCAATCATCCGTCG 61.753 60.000 0.00 0.00 0.00 5.12
482 485 0.457853 CACCGTCAATCATCCGTCGT 60.458 55.000 0.00 0.00 0.00 4.34
483 486 0.179145 ACCGTCAATCATCCGTCGTC 60.179 55.000 0.00 0.00 0.00 4.20
484 487 0.870307 CCGTCAATCATCCGTCGTCC 60.870 60.000 0.00 0.00 0.00 4.79
485 488 0.100682 CGTCAATCATCCGTCGTCCT 59.899 55.000 0.00 0.00 0.00 3.85
486 489 1.841450 GTCAATCATCCGTCGTCCTC 58.159 55.000 0.00 0.00 0.00 3.71
487 490 1.134367 GTCAATCATCCGTCGTCCTCA 59.866 52.381 0.00 0.00 0.00 3.86
488 491 1.405463 TCAATCATCCGTCGTCCTCAG 59.595 52.381 0.00 0.00 0.00 3.35
489 492 1.135139 CAATCATCCGTCGTCCTCAGT 59.865 52.381 0.00 0.00 0.00 3.41
490 493 1.475403 ATCATCCGTCGTCCTCAGTT 58.525 50.000 0.00 0.00 0.00 3.16
491 494 0.809385 TCATCCGTCGTCCTCAGTTC 59.191 55.000 0.00 0.00 0.00 3.01
492 495 0.523546 CATCCGTCGTCCTCAGTTCG 60.524 60.000 0.00 0.00 0.00 3.95
493 496 0.959372 ATCCGTCGTCCTCAGTTCGT 60.959 55.000 0.00 0.00 0.00 3.85
494 497 1.442184 CCGTCGTCCTCAGTTCGTG 60.442 63.158 0.00 0.00 0.00 4.35
495 498 1.281960 CGTCGTCCTCAGTTCGTGT 59.718 57.895 0.00 0.00 0.00 4.49
496 499 0.997226 CGTCGTCCTCAGTTCGTGTG 60.997 60.000 0.00 0.00 0.00 3.82
497 500 0.663568 GTCGTCCTCAGTTCGTGTGG 60.664 60.000 0.00 0.00 40.67 4.17
498 501 1.372997 CGTCCTCAGTTCGTGTGGG 60.373 63.158 0.00 0.00 39.87 4.61
499 502 1.668151 GTCCTCAGTTCGTGTGGGC 60.668 63.158 0.00 0.00 39.87 5.36
500 503 2.137528 TCCTCAGTTCGTGTGGGCA 61.138 57.895 0.00 0.00 39.87 5.36
501 504 1.227823 CCTCAGTTCGTGTGGGCAA 60.228 57.895 0.00 0.00 36.33 4.52
502 505 0.817634 CCTCAGTTCGTGTGGGCAAA 60.818 55.000 0.00 0.00 36.33 3.68
503 506 0.588252 CTCAGTTCGTGTGGGCAAAG 59.412 55.000 0.00 0.00 0.00 2.77
504 507 0.107410 TCAGTTCGTGTGGGCAAAGT 60.107 50.000 0.00 0.00 0.00 2.66
505 508 0.029300 CAGTTCGTGTGGGCAAAGTG 59.971 55.000 0.00 0.00 0.00 3.16
506 509 0.393808 AGTTCGTGTGGGCAAAGTGT 60.394 50.000 0.00 0.00 0.00 3.55
507 510 0.028902 GTTCGTGTGGGCAAAGTGTC 59.971 55.000 0.00 0.00 0.00 3.67
508 511 1.433053 TTCGTGTGGGCAAAGTGTCG 61.433 55.000 0.00 0.00 0.00 4.35
509 512 2.177580 CGTGTGGGCAAAGTGTCGT 61.178 57.895 0.00 0.00 0.00 4.34
510 513 1.647084 GTGTGGGCAAAGTGTCGTC 59.353 57.895 0.00 0.00 0.00 4.20
511 514 1.525077 TGTGGGCAAAGTGTCGTCC 60.525 57.895 0.00 0.00 0.00 4.79
512 515 2.280524 TGGGCAAAGTGTCGTCCG 60.281 61.111 0.00 0.00 0.00 4.79
513 516 3.723348 GGGCAAAGTGTCGTCCGC 61.723 66.667 0.00 0.00 0.00 5.54
514 517 2.970324 GGCAAAGTGTCGTCCGCA 60.970 61.111 0.00 0.00 0.00 5.69
515 518 2.248431 GCAAAGTGTCGTCCGCAC 59.752 61.111 6.26 6.26 37.13 5.34
516 519 2.530497 GCAAAGTGTCGTCCGCACA 61.530 57.895 13.69 3.46 39.17 4.57
517 520 1.564622 CAAAGTGTCGTCCGCACAG 59.435 57.895 13.69 3.56 39.17 3.66
518 521 1.143183 AAAGTGTCGTCCGCACAGT 59.857 52.632 13.69 5.75 39.17 3.55
519 522 0.386476 AAAGTGTCGTCCGCACAGTA 59.614 50.000 13.69 0.00 39.17 2.74
520 523 0.318445 AAGTGTCGTCCGCACAGTAC 60.318 55.000 13.69 0.00 39.17 2.73
521 524 1.170919 AGTGTCGTCCGCACAGTACT 61.171 55.000 13.69 0.00 39.17 2.73
522 525 0.318445 GTGTCGTCCGCACAGTACTT 60.318 55.000 0.00 0.00 36.88 2.24
523 526 0.039798 TGTCGTCCGCACAGTACTTC 60.040 55.000 0.00 0.00 0.00 3.01
524 527 0.731855 GTCGTCCGCACAGTACTTCC 60.732 60.000 0.00 0.00 0.00 3.46
525 528 1.800315 CGTCCGCACAGTACTTCCG 60.800 63.158 0.00 0.00 0.00 4.30
526 529 1.445582 GTCCGCACAGTACTTCCGG 60.446 63.158 15.82 15.82 40.25 5.14
527 530 2.813908 CCGCACAGTACTTCCGGC 60.814 66.667 11.34 4.28 31.87 6.13
528 531 2.261671 CGCACAGTACTTCCGGCT 59.738 61.111 0.00 0.00 0.00 5.52
529 532 1.509463 CGCACAGTACTTCCGGCTA 59.491 57.895 0.00 0.00 0.00 3.93
530 533 0.525668 CGCACAGTACTTCCGGCTAG 60.526 60.000 0.00 0.00 0.00 3.42
570 573 1.198408 GTGTGTGATGACGTCCGACTA 59.802 52.381 14.12 0.00 0.00 2.59
574 577 2.008329 GTGATGACGTCCGACTAGACT 58.992 52.381 14.12 0.00 34.46 3.24
623 633 1.903877 CGCCCTTGACCAGACCAGAT 61.904 60.000 0.00 0.00 0.00 2.90
639 649 3.648067 ACCAGATCAGACCAGAGTTTTCA 59.352 43.478 0.00 0.00 0.00 2.69
640 650 3.999663 CCAGATCAGACCAGAGTTTTCAC 59.000 47.826 0.00 0.00 0.00 3.18
641 651 3.677121 CAGATCAGACCAGAGTTTTCACG 59.323 47.826 0.00 0.00 0.00 4.35
643 653 0.868406 CAGACCAGAGTTTTCACGGC 59.132 55.000 0.00 0.00 0.00 5.68
649 659 3.011760 GAGTTTTCACGGCCGCTCG 62.012 63.158 28.58 14.86 0.00 5.03
659 673 4.357947 GCCGCTCGTGGTCTCACA 62.358 66.667 0.00 0.00 43.79 3.58
663 677 1.857318 CGCTCGTGGTCTCACACTCT 61.857 60.000 0.00 0.00 43.79 3.24
664 678 0.109504 GCTCGTGGTCTCACACTCTC 60.110 60.000 0.00 0.00 43.79 3.20
774 792 1.726853 CCCTCGAAAACACTAGCCTG 58.273 55.000 0.00 0.00 0.00 4.85
806 1953 0.318762 GTCTCACTCCACAGTCCACC 59.681 60.000 0.00 0.00 0.00 4.61
815 1962 2.125753 CAGTCCACCGCTCAGAGC 60.126 66.667 12.94 12.94 38.02 4.09
867 2014 1.923356 CTCCCTCTCCTCCATAGCTC 58.077 60.000 0.00 0.00 0.00 4.09
902 2059 6.772716 TCTTGCCAAATGTAAGTCTCTCTTTT 59.227 34.615 0.00 0.00 37.84 2.27
924 2081 6.408858 TTTCTACATCTTCTCGCATGTTTC 57.591 37.500 0.00 0.00 34.92 2.78
925 2082 4.105486 TCTACATCTTCTCGCATGTTTCG 58.895 43.478 0.00 0.00 34.92 3.46
926 2083 2.959516 ACATCTTCTCGCATGTTTCGA 58.040 42.857 0.00 0.00 28.27 3.71
955 2112 1.338674 TGAATCGCACGTTGGATCCTT 60.339 47.619 14.23 0.00 0.00 3.36
962 2119 0.175073 ACGTTGGATCCTTACTCCGC 59.825 55.000 14.23 0.00 35.41 5.54
1007 2171 2.973899 CCGGAGATCTATGGCGGG 59.026 66.667 0.00 0.00 0.00 6.13
1116 2280 1.482748 TAGTTGGTTCGGGGGTCACC 61.483 60.000 0.00 0.00 39.11 4.02
1158 2322 2.281761 AGTCCAGTTGCCAAGGCG 60.282 61.111 6.60 0.00 45.51 5.52
1423 2599 1.000739 AGTCCAATGGCCACCATGG 59.999 57.895 22.37 22.37 44.40 3.66
1468 2644 4.789075 TGGCTACGAAGACGCCGC 62.789 66.667 0.00 0.00 45.87 6.53
1572 2748 2.427320 GAGCCCAGTGCAGTGTCA 59.573 61.111 19.93 0.00 44.83 3.58
1585 2761 1.659335 GTGTCAACGAAGACGCCGA 60.659 57.895 12.34 0.00 41.85 5.54
1704 2910 0.911769 TAACAGCAGCCATGGTAGCT 59.088 50.000 22.39 22.39 42.70 3.32
1756 2962 6.688073 TCTTAGAGGTGAAGAAGAAATGGT 57.312 37.500 0.00 0.00 29.97 3.55
1837 3043 3.190327 TCGAACTAACCGAAATGTCCGTA 59.810 43.478 0.00 0.00 32.64 4.02
2086 3325 1.464376 CGAGGTCCATCGCCTACCAT 61.464 60.000 0.00 0.00 36.29 3.55
2317 3565 4.680237 CGCGTGTTCCTCCTGGCA 62.680 66.667 0.00 0.00 0.00 4.92
2386 3634 1.153369 CGTCAGGGGCAATGTCGAT 60.153 57.895 0.00 0.00 32.16 3.59
2465 3719 4.792804 GCCACCTCAGGAGCAGCC 62.793 72.222 0.00 0.00 0.00 4.85
2680 3936 5.961843 CCGTATTGTCAGTAGTACGTTAGTG 59.038 44.000 0.00 0.00 38.50 2.74
2705 3961 3.067461 TGCGTGCTGTTCTATTTTGGTTT 59.933 39.130 0.00 0.00 0.00 3.27
2707 3963 3.425193 CGTGCTGTTCTATTTTGGTTTGC 59.575 43.478 0.00 0.00 0.00 3.68
2721 3977 0.234884 GTTTGCTCCGTGTGTGCTAC 59.765 55.000 0.00 0.00 34.56 3.58
2722 3978 0.105964 TTTGCTCCGTGTGTGCTACT 59.894 50.000 0.00 0.00 34.56 2.57
2723 3979 0.963225 TTGCTCCGTGTGTGCTACTA 59.037 50.000 0.00 0.00 34.56 1.82
2724 3980 1.182667 TGCTCCGTGTGTGCTACTAT 58.817 50.000 0.00 0.00 34.56 2.12
2725 3981 2.371306 TGCTCCGTGTGTGCTACTATA 58.629 47.619 0.00 0.00 34.56 1.31
2726 3982 2.756207 TGCTCCGTGTGTGCTACTATAA 59.244 45.455 0.00 0.00 34.56 0.98
2825 4082 3.214328 AGTGAAATGCGTTGAAGAACCT 58.786 40.909 0.00 0.00 0.00 3.50
2867 4126 2.034999 GGATTTGGGGCACACGGA 59.965 61.111 0.00 0.00 0.00 4.69
2940 4199 7.355017 GTGTATTCGTCGGTGTATATCAGTAA 58.645 38.462 0.00 0.00 0.00 2.24
3035 4294 9.157104 TCGATAAACAGTATCTGTAAAAATGCA 57.843 29.630 2.80 0.00 44.62 3.96
3036 4295 9.210426 CGATAAACAGTATCTGTAAAAATGCAC 57.790 33.333 2.80 0.00 44.62 4.57
3081 4343 5.758296 TGAAAGCGTTATGTGTTCTTCTCTT 59.242 36.000 0.00 0.00 0.00 2.85
3118 4380 2.303311 AGTACCCACTGCTTCTCCTTTC 59.697 50.000 0.00 0.00 32.25 2.62
3146 4408 9.912634 TTTTTATTTTGAAAGGTCTAGCATCAG 57.087 29.630 0.00 0.00 0.00 2.90
3147 4409 5.573337 ATTTTGAAAGGTCTAGCATCAGC 57.427 39.130 0.00 0.00 42.56 4.26
3149 4411 3.701205 TGAAAGGTCTAGCATCAGCAA 57.299 42.857 0.00 0.00 45.49 3.91
3150 4412 4.019792 TGAAAGGTCTAGCATCAGCAAA 57.980 40.909 0.00 0.00 45.49 3.68
3153 4415 6.179756 TGAAAGGTCTAGCATCAGCAAAATA 58.820 36.000 0.00 0.00 45.49 1.40
3154 4416 6.658816 TGAAAGGTCTAGCATCAGCAAAATAA 59.341 34.615 0.00 0.00 45.49 1.40
3155 4417 7.340232 TGAAAGGTCTAGCATCAGCAAAATAAT 59.660 33.333 0.00 0.00 45.49 1.28
3157 4419 8.752005 AAGGTCTAGCATCAGCAAAATAATAA 57.248 30.769 0.00 0.00 45.49 1.40
3158 4420 8.388484 AGGTCTAGCATCAGCAAAATAATAAG 57.612 34.615 0.00 0.00 45.49 1.73
3240 4595 3.961480 ATAGCTGTAGCACAACACTCA 57.039 42.857 6.65 0.00 45.16 3.41
3254 4609 5.868801 CACAACACTCAAAAGAAAACCACAT 59.131 36.000 0.00 0.00 0.00 3.21
3266 4621 6.767524 AGAAAACCACATAAGACAACACAA 57.232 33.333 0.00 0.00 0.00 3.33
3290 4645 2.377628 GACTCCGGTGGTGAACTGCA 62.378 60.000 8.63 0.00 33.36 4.41
3318 4673 0.320771 AGGCAAGGTTAGCGTCACAG 60.321 55.000 0.00 0.00 0.00 3.66
3327 4682 2.181777 GCGTCACAGAGGATCGCA 59.818 61.111 0.00 0.00 45.01 5.10
3328 4683 1.446099 GCGTCACAGAGGATCGCAA 60.446 57.895 0.00 0.00 45.01 4.85
3421 4776 3.637273 AGTCGAGGCAACCCCACC 61.637 66.667 0.00 0.00 35.39 4.61
3424 4779 4.096003 CGAGGCAACCCCACCGAT 62.096 66.667 0.00 0.00 34.99 4.18
3492 4847 3.262420 GACATGCTCACTACCGTCATTT 58.738 45.455 0.00 0.00 0.00 2.32
3525 4880 3.533105 ACCGTGCACGTCCAGTCA 61.533 61.111 34.81 0.00 37.74 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.744468 GCGGGACAAAAATTATATCACTAAATT 57.256 29.630 0.00 0.00 0.00 1.82
18 19 8.357402 GGCGGGACAAAAATTATATCACTAAAT 58.643 33.333 0.00 0.00 0.00 1.40
19 20 7.467539 CGGCGGGACAAAAATTATATCACTAAA 60.468 37.037 0.00 0.00 0.00 1.85
20 21 6.017770 CGGCGGGACAAAAATTATATCACTAA 60.018 38.462 0.00 0.00 0.00 2.24
21 22 5.467399 CGGCGGGACAAAAATTATATCACTA 59.533 40.000 0.00 0.00 0.00 2.74
22 23 4.274950 CGGCGGGACAAAAATTATATCACT 59.725 41.667 0.00 0.00 0.00 3.41
23 24 4.533222 CGGCGGGACAAAAATTATATCAC 58.467 43.478 0.00 0.00 0.00 3.06
24 25 3.003897 GCGGCGGGACAAAAATTATATCA 59.996 43.478 9.78 0.00 0.00 2.15
25 26 3.003897 TGCGGCGGGACAAAAATTATATC 59.996 43.478 9.78 0.00 0.00 1.63
26 27 2.952978 TGCGGCGGGACAAAAATTATAT 59.047 40.909 9.78 0.00 0.00 0.86
27 28 2.356382 CTGCGGCGGGACAAAAATTATA 59.644 45.455 9.78 0.00 0.00 0.98
28 29 1.134175 CTGCGGCGGGACAAAAATTAT 59.866 47.619 9.78 0.00 0.00 1.28
29 30 0.523966 CTGCGGCGGGACAAAAATTA 59.476 50.000 9.78 0.00 0.00 1.40
30 31 1.288752 CTGCGGCGGGACAAAAATT 59.711 52.632 9.78 0.00 0.00 1.82
31 32 1.862602 GACTGCGGCGGGACAAAAAT 61.863 55.000 14.26 0.00 0.00 1.82
32 33 2.517402 ACTGCGGCGGGACAAAAA 60.517 55.556 14.26 0.00 0.00 1.94
33 34 2.975799 GACTGCGGCGGGACAAAA 60.976 61.111 14.26 0.00 0.00 2.44
44 45 0.109873 AACTAACGAGACCGACTGCG 60.110 55.000 0.00 0.00 39.50 5.18
45 46 2.907910 TAACTAACGAGACCGACTGC 57.092 50.000 0.00 0.00 39.50 4.40
46 47 6.701432 AAATTTAACTAACGAGACCGACTG 57.299 37.500 0.00 0.00 39.50 3.51
47 48 6.524586 CGTAAATTTAACTAACGAGACCGACT 59.475 38.462 4.77 0.00 39.50 4.18
48 49 6.237306 CCGTAAATTTAACTAACGAGACCGAC 60.237 42.308 11.09 0.00 39.50 4.79
49 50 5.799936 CCGTAAATTTAACTAACGAGACCGA 59.200 40.000 11.09 0.00 39.50 4.69
50 51 5.572896 ACCGTAAATTTAACTAACGAGACCG 59.427 40.000 11.09 1.83 42.50 4.79
51 52 6.586082 TGACCGTAAATTTAACTAACGAGACC 59.414 38.462 11.09 0.52 35.66 3.85
52 53 7.566858 TGACCGTAAATTTAACTAACGAGAC 57.433 36.000 11.09 4.23 35.66 3.36
53 54 8.586570 TTTGACCGTAAATTTAACTAACGAGA 57.413 30.769 11.09 0.00 35.66 4.04
54 55 8.490355 ACTTTGACCGTAAATTTAACTAACGAG 58.510 33.333 11.09 4.08 35.66 4.18
55 56 8.364129 ACTTTGACCGTAAATTTAACTAACGA 57.636 30.769 11.09 0.00 35.66 3.85
56 57 8.992287 AACTTTGACCGTAAATTTAACTAACG 57.008 30.769 0.00 1.44 0.00 3.18
57 58 9.934190 TGAACTTTGACCGTAAATTTAACTAAC 57.066 29.630 0.00 0.00 0.00 2.34
60 61 9.673454 GATTGAACTTTGACCGTAAATTTAACT 57.327 29.630 0.00 0.00 0.00 2.24
61 62 9.673454 AGATTGAACTTTGACCGTAAATTTAAC 57.327 29.630 0.00 0.00 0.00 2.01
62 63 9.887406 GAGATTGAACTTTGACCGTAAATTTAA 57.113 29.630 0.00 0.00 0.00 1.52
63 64 9.058174 TGAGATTGAACTTTGACCGTAAATTTA 57.942 29.630 0.00 0.00 0.00 1.40
64 65 7.936584 TGAGATTGAACTTTGACCGTAAATTT 58.063 30.769 0.00 0.00 0.00 1.82
65 66 7.444183 TCTGAGATTGAACTTTGACCGTAAATT 59.556 33.333 0.00 0.00 0.00 1.82
66 67 6.934645 TCTGAGATTGAACTTTGACCGTAAAT 59.065 34.615 0.00 0.00 0.00 1.40
67 68 6.285224 TCTGAGATTGAACTTTGACCGTAAA 58.715 36.000 0.00 0.00 0.00 2.01
68 69 5.849510 TCTGAGATTGAACTTTGACCGTAA 58.150 37.500 0.00 0.00 0.00 3.18
69 70 5.462530 TCTGAGATTGAACTTTGACCGTA 57.537 39.130 0.00 0.00 0.00 4.02
70 71 4.336889 TCTGAGATTGAACTTTGACCGT 57.663 40.909 0.00 0.00 0.00 4.83
71 72 5.673337 TTTCTGAGATTGAACTTTGACCG 57.327 39.130 0.00 0.00 0.00 4.79
72 73 6.364435 GCATTTTCTGAGATTGAACTTTGACC 59.636 38.462 0.00 0.00 0.00 4.02
73 74 6.087291 CGCATTTTCTGAGATTGAACTTTGAC 59.913 38.462 0.00 0.00 0.00 3.18
74 75 6.144854 CGCATTTTCTGAGATTGAACTTTGA 58.855 36.000 0.00 0.00 0.00 2.69
75 76 5.344128 CCGCATTTTCTGAGATTGAACTTTG 59.656 40.000 0.00 0.00 0.00 2.77
76 77 5.241506 TCCGCATTTTCTGAGATTGAACTTT 59.758 36.000 0.00 0.00 0.00 2.66
77 78 4.761739 TCCGCATTTTCTGAGATTGAACTT 59.238 37.500 0.00 0.00 0.00 2.66
78 79 4.154918 GTCCGCATTTTCTGAGATTGAACT 59.845 41.667 0.00 0.00 0.00 3.01
79 80 4.083324 TGTCCGCATTTTCTGAGATTGAAC 60.083 41.667 0.00 0.00 0.00 3.18
80 81 4.071423 TGTCCGCATTTTCTGAGATTGAA 58.929 39.130 0.00 0.00 0.00 2.69
81 82 3.436704 GTGTCCGCATTTTCTGAGATTGA 59.563 43.478 0.00 0.00 0.00 2.57
82 83 3.189080 TGTGTCCGCATTTTCTGAGATTG 59.811 43.478 0.00 0.00 0.00 2.67
83 84 3.189287 GTGTGTCCGCATTTTCTGAGATT 59.811 43.478 0.00 0.00 0.00 2.40
84 85 2.744202 GTGTGTCCGCATTTTCTGAGAT 59.256 45.455 0.00 0.00 0.00 2.75
85 86 2.143122 GTGTGTCCGCATTTTCTGAGA 58.857 47.619 0.00 0.00 0.00 3.27
86 87 2.146342 AGTGTGTCCGCATTTTCTGAG 58.854 47.619 0.00 0.00 0.00 3.35
87 88 2.254546 AGTGTGTCCGCATTTTCTGA 57.745 45.000 0.00 0.00 0.00 3.27
88 89 2.805671 TGTAGTGTGTCCGCATTTTCTG 59.194 45.455 0.00 0.00 0.00 3.02
89 90 3.120321 TGTAGTGTGTCCGCATTTTCT 57.880 42.857 0.00 0.00 0.00 2.52
90 91 4.158384 CAATGTAGTGTGTCCGCATTTTC 58.842 43.478 0.00 0.00 0.00 2.29
91 92 3.568007 ACAATGTAGTGTGTCCGCATTTT 59.432 39.130 0.00 0.00 0.00 1.82
92 93 3.058293 CACAATGTAGTGTGTCCGCATTT 60.058 43.478 4.44 0.00 43.26 2.32
93 94 2.483877 CACAATGTAGTGTGTCCGCATT 59.516 45.455 4.44 0.00 43.26 3.56
94 95 2.076100 CACAATGTAGTGTGTCCGCAT 58.924 47.619 4.44 0.00 43.26 4.73
95 96 1.507562 CACAATGTAGTGTGTCCGCA 58.492 50.000 4.44 0.00 43.26 5.69
102 103 3.070446 TCCTCCGTTTCACAATGTAGTGT 59.930 43.478 0.00 0.00 40.37 3.55
103 104 3.659786 TCCTCCGTTTCACAATGTAGTG 58.340 45.455 0.00 0.00 40.85 2.74
104 105 4.202326 ACTTCCTCCGTTTCACAATGTAGT 60.202 41.667 0.00 0.00 0.00 2.73
105 106 4.315803 ACTTCCTCCGTTTCACAATGTAG 58.684 43.478 0.00 0.00 0.00 2.74
106 107 4.345859 ACTTCCTCCGTTTCACAATGTA 57.654 40.909 0.00 0.00 0.00 2.29
107 108 3.208747 ACTTCCTCCGTTTCACAATGT 57.791 42.857 0.00 0.00 0.00 2.71
108 109 4.032900 CGATACTTCCTCCGTTTCACAATG 59.967 45.833 0.00 0.00 0.00 2.82
109 110 4.181578 CGATACTTCCTCCGTTTCACAAT 58.818 43.478 0.00 0.00 0.00 2.71
110 111 3.581755 CGATACTTCCTCCGTTTCACAA 58.418 45.455 0.00 0.00 0.00 3.33
111 112 2.094390 CCGATACTTCCTCCGTTTCACA 60.094 50.000 0.00 0.00 0.00 3.58
112 113 2.537401 CCGATACTTCCTCCGTTTCAC 58.463 52.381 0.00 0.00 0.00 3.18
113 114 1.479323 CCCGATACTTCCTCCGTTTCA 59.521 52.381 0.00 0.00 0.00 2.69
114 115 1.805495 GCCCGATACTTCCTCCGTTTC 60.805 57.143 0.00 0.00 0.00 2.78
115 116 0.177373 GCCCGATACTTCCTCCGTTT 59.823 55.000 0.00 0.00 0.00 3.60
116 117 0.974010 TGCCCGATACTTCCTCCGTT 60.974 55.000 0.00 0.00 0.00 4.44
117 118 1.380785 TGCCCGATACTTCCTCCGT 60.381 57.895 0.00 0.00 0.00 4.69
118 119 1.364171 CTGCCCGATACTTCCTCCG 59.636 63.158 0.00 0.00 0.00 4.63
119 120 1.340568 GTACTGCCCGATACTTCCTCC 59.659 57.143 0.00 0.00 0.00 4.30
120 121 1.340568 GGTACTGCCCGATACTTCCTC 59.659 57.143 0.00 0.00 0.00 3.71
121 122 1.063114 AGGTACTGCCCGATACTTCCT 60.063 52.381 0.00 0.00 37.18 3.36
122 123 1.411041 AGGTACTGCCCGATACTTCC 58.589 55.000 0.00 0.00 37.18 3.46
135 136 5.566627 GCAAAACAAACATATGCCAGGTACT 60.567 40.000 1.58 0.00 43.88 2.73
136 137 4.625311 GCAAAACAAACATATGCCAGGTAC 59.375 41.667 1.58 0.00 0.00 3.34
137 138 4.526262 AGCAAAACAAACATATGCCAGGTA 59.474 37.500 1.58 0.00 37.73 3.08
138 139 3.324556 AGCAAAACAAACATATGCCAGGT 59.675 39.130 1.58 0.00 37.73 4.00
139 140 3.929094 AGCAAAACAAACATATGCCAGG 58.071 40.909 1.58 0.00 37.73 4.45
140 141 4.989797 TCAAGCAAAACAAACATATGCCAG 59.010 37.500 1.58 0.00 37.73 4.85
141 142 4.953667 TCAAGCAAAACAAACATATGCCA 58.046 34.783 1.58 0.00 37.73 4.92
142 143 4.143052 GCTCAAGCAAAACAAACATATGCC 60.143 41.667 1.58 0.00 41.59 4.40
143 144 4.687483 AGCTCAAGCAAAACAAACATATGC 59.313 37.500 1.58 0.00 45.16 3.14
144 145 5.921976 TGAGCTCAAGCAAAACAAACATATG 59.078 36.000 15.67 0.00 45.16 1.78
145 146 5.922544 GTGAGCTCAAGCAAAACAAACATAT 59.077 36.000 20.19 0.00 45.16 1.78
146 147 5.163571 TGTGAGCTCAAGCAAAACAAACATA 60.164 36.000 20.19 0.00 45.16 2.29
147 148 4.114794 GTGAGCTCAAGCAAAACAAACAT 58.885 39.130 20.19 0.00 45.16 2.71
148 149 3.056962 TGTGAGCTCAAGCAAAACAAACA 60.057 39.130 20.19 4.46 45.16 2.83
149 150 3.510719 TGTGAGCTCAAGCAAAACAAAC 58.489 40.909 20.19 1.49 45.16 2.93
150 151 3.443329 TCTGTGAGCTCAAGCAAAACAAA 59.557 39.130 20.19 0.00 45.16 2.83
151 152 3.016031 TCTGTGAGCTCAAGCAAAACAA 58.984 40.909 20.19 0.00 45.16 2.83
152 153 2.642427 TCTGTGAGCTCAAGCAAAACA 58.358 42.857 20.19 9.38 45.16 2.83
153 154 3.698029 TTCTGTGAGCTCAAGCAAAAC 57.302 42.857 20.19 4.49 45.16 2.43
154 155 4.924305 ATTTCTGTGAGCTCAAGCAAAA 57.076 36.364 20.19 16.09 45.16 2.44
155 156 5.706833 TCATATTTCTGTGAGCTCAAGCAAA 59.293 36.000 20.19 16.52 45.16 3.68
156 157 5.122869 GTCATATTTCTGTGAGCTCAAGCAA 59.877 40.000 20.19 14.40 45.16 3.91
157 158 4.633126 GTCATATTTCTGTGAGCTCAAGCA 59.367 41.667 20.19 12.50 45.16 3.91
158 159 4.874966 AGTCATATTTCTGTGAGCTCAAGC 59.125 41.667 20.19 7.78 42.49 4.01
159 160 6.675002 GCAAGTCATATTTCTGTGAGCTCAAG 60.675 42.308 20.19 17.31 0.00 3.02
160 161 5.122869 GCAAGTCATATTTCTGTGAGCTCAA 59.877 40.000 20.19 2.01 0.00 3.02
161 162 4.633126 GCAAGTCATATTTCTGTGAGCTCA 59.367 41.667 13.74 13.74 0.00 4.26
162 163 4.874966 AGCAAGTCATATTTCTGTGAGCTC 59.125 41.667 6.82 6.82 0.00 4.09
163 164 4.841422 AGCAAGTCATATTTCTGTGAGCT 58.159 39.130 0.00 0.00 0.00 4.09
164 165 4.034975 GGAGCAAGTCATATTTCTGTGAGC 59.965 45.833 0.00 0.00 0.00 4.26
165 166 4.269603 CGGAGCAAGTCATATTTCTGTGAG 59.730 45.833 0.00 0.00 0.00 3.51
166 167 4.183865 CGGAGCAAGTCATATTTCTGTGA 58.816 43.478 0.00 0.00 0.00 3.58
167 168 3.935203 ACGGAGCAAGTCATATTTCTGTG 59.065 43.478 0.00 0.00 0.00 3.66
168 169 4.207891 ACGGAGCAAGTCATATTTCTGT 57.792 40.909 0.00 0.00 0.00 3.41
169 170 5.896922 CTACGGAGCAAGTCATATTTCTG 57.103 43.478 0.00 0.00 0.00 3.02
184 185 6.487689 AAATTTGAAAGAGAAGCTACGGAG 57.512 37.500 0.00 0.00 0.00 4.63
185 186 6.485313 TGAAAATTTGAAAGAGAAGCTACGGA 59.515 34.615 0.00 0.00 0.00 4.69
186 187 6.668323 TGAAAATTTGAAAGAGAAGCTACGG 58.332 36.000 0.00 0.00 0.00 4.02
187 188 7.355778 ACTGAAAATTTGAAAGAGAAGCTACG 58.644 34.615 0.00 0.00 0.00 3.51
188 189 9.521503 AAACTGAAAATTTGAAAGAGAAGCTAC 57.478 29.630 0.00 0.00 0.00 3.58
189 190 9.736023 GAAACTGAAAATTTGAAAGAGAAGCTA 57.264 29.630 0.00 0.00 0.00 3.32
190 191 8.253113 TGAAACTGAAAATTTGAAAGAGAAGCT 58.747 29.630 0.00 0.00 0.00 3.74
191 192 8.411318 TGAAACTGAAAATTTGAAAGAGAAGC 57.589 30.769 0.00 0.00 0.00 3.86
192 193 9.793252 TCTGAAACTGAAAATTTGAAAGAGAAG 57.207 29.630 0.00 0.00 0.00 2.85
193 194 9.793252 CTCTGAAACTGAAAATTTGAAAGAGAA 57.207 29.630 0.00 0.00 0.00 2.87
194 195 7.917505 GCTCTGAAACTGAAAATTTGAAAGAGA 59.082 33.333 0.00 0.00 0.00 3.10
195 196 7.919621 AGCTCTGAAACTGAAAATTTGAAAGAG 59.080 33.333 0.00 0.00 0.00 2.85
196 197 7.775120 AGCTCTGAAACTGAAAATTTGAAAGA 58.225 30.769 0.00 0.00 0.00 2.52
197 198 7.998753 AGCTCTGAAACTGAAAATTTGAAAG 57.001 32.000 0.00 0.00 0.00 2.62
198 199 8.658609 CAAAGCTCTGAAACTGAAAATTTGAAA 58.341 29.630 0.00 0.00 0.00 2.69
199 200 7.818930 ACAAAGCTCTGAAACTGAAAATTTGAA 59.181 29.630 0.00 0.00 0.00 2.69
200 201 7.322664 ACAAAGCTCTGAAACTGAAAATTTGA 58.677 30.769 0.00 0.00 0.00 2.69
201 202 7.529880 ACAAAGCTCTGAAACTGAAAATTTG 57.470 32.000 0.00 0.00 0.00 2.32
202 203 9.822185 ATTACAAAGCTCTGAAACTGAAAATTT 57.178 25.926 0.00 0.00 0.00 1.82
203 204 9.822185 AATTACAAAGCTCTGAAACTGAAAATT 57.178 25.926 0.00 0.00 0.00 1.82
204 205 9.468532 GAATTACAAAGCTCTGAAACTGAAAAT 57.531 29.630 0.00 0.00 0.00 1.82
205 206 8.465999 TGAATTACAAAGCTCTGAAACTGAAAA 58.534 29.630 0.00 0.00 0.00 2.29
206 207 7.915397 GTGAATTACAAAGCTCTGAAACTGAAA 59.085 33.333 0.00 0.00 0.00 2.69
207 208 7.417612 GTGAATTACAAAGCTCTGAAACTGAA 58.582 34.615 0.00 0.00 0.00 3.02
208 209 6.292865 CGTGAATTACAAAGCTCTGAAACTGA 60.293 38.462 0.00 0.00 0.00 3.41
209 210 5.848036 CGTGAATTACAAAGCTCTGAAACTG 59.152 40.000 0.00 0.00 0.00 3.16
210 211 5.560953 GCGTGAATTACAAAGCTCTGAAACT 60.561 40.000 0.00 0.00 33.67 2.66
211 212 4.613031 GCGTGAATTACAAAGCTCTGAAAC 59.387 41.667 0.00 0.00 33.67 2.78
212 213 4.515191 AGCGTGAATTACAAAGCTCTGAAA 59.485 37.500 0.00 0.00 39.35 2.69
213 214 4.065088 AGCGTGAATTACAAAGCTCTGAA 58.935 39.130 0.00 0.00 39.35 3.02
214 215 3.664107 AGCGTGAATTACAAAGCTCTGA 58.336 40.909 0.00 0.00 39.35 3.27
215 216 5.725110 ATAGCGTGAATTACAAAGCTCTG 57.275 39.130 0.00 0.00 42.01 3.35
216 217 6.255887 GTGTATAGCGTGAATTACAAAGCTCT 59.744 38.462 0.00 0.00 42.01 4.09
217 218 6.255887 AGTGTATAGCGTGAATTACAAAGCTC 59.744 38.462 0.00 0.00 42.01 4.09
218 219 6.036083 CAGTGTATAGCGTGAATTACAAAGCT 59.964 38.462 0.00 0.00 43.43 3.74
219 220 6.183360 ACAGTGTATAGCGTGAATTACAAAGC 60.183 38.462 0.00 0.00 35.61 3.51
220 221 7.062956 TGACAGTGTATAGCGTGAATTACAAAG 59.937 37.037 0.00 0.00 0.00 2.77
221 222 6.869388 TGACAGTGTATAGCGTGAATTACAAA 59.131 34.615 0.00 0.00 0.00 2.83
222 223 6.391537 TGACAGTGTATAGCGTGAATTACAA 58.608 36.000 0.00 0.00 0.00 2.41
223 224 5.956642 TGACAGTGTATAGCGTGAATTACA 58.043 37.500 0.00 0.00 0.00 2.41
224 225 7.222031 TCAATGACAGTGTATAGCGTGAATTAC 59.778 37.037 2.39 0.00 0.00 1.89
225 226 7.262048 TCAATGACAGTGTATAGCGTGAATTA 58.738 34.615 2.39 0.00 0.00 1.40
226 227 6.106003 TCAATGACAGTGTATAGCGTGAATT 58.894 36.000 2.39 0.00 0.00 2.17
227 228 5.660460 TCAATGACAGTGTATAGCGTGAAT 58.340 37.500 2.39 0.00 0.00 2.57
228 229 5.066968 TCAATGACAGTGTATAGCGTGAA 57.933 39.130 2.39 0.00 0.00 3.18
229 230 4.672409 CTCAATGACAGTGTATAGCGTGA 58.328 43.478 2.39 0.00 0.00 4.35
230 231 3.243877 GCTCAATGACAGTGTATAGCGTG 59.756 47.826 2.39 0.00 0.00 5.34
231 232 3.131223 AGCTCAATGACAGTGTATAGCGT 59.869 43.478 2.39 0.00 34.01 5.07
232 233 3.488678 CAGCTCAATGACAGTGTATAGCG 59.511 47.826 2.39 0.00 34.01 4.26
233 234 4.686972 TCAGCTCAATGACAGTGTATAGC 58.313 43.478 6.90 6.90 0.00 2.97
234 235 7.493645 TCATTTCAGCTCAATGACAGTGTATAG 59.506 37.037 12.12 0.00 36.03 1.31
235 236 7.330262 TCATTTCAGCTCAATGACAGTGTATA 58.670 34.615 12.12 0.00 36.03 1.47
236 237 6.175471 TCATTTCAGCTCAATGACAGTGTAT 58.825 36.000 12.12 0.00 36.03 2.29
237 238 5.550290 TCATTTCAGCTCAATGACAGTGTA 58.450 37.500 12.12 0.00 36.03 2.90
238 239 4.392047 TCATTTCAGCTCAATGACAGTGT 58.608 39.130 12.12 0.00 36.03 3.55
239 240 5.562506 ATCATTTCAGCTCAATGACAGTG 57.437 39.130 16.70 0.00 42.17 3.66
240 241 6.827251 ACATATCATTTCAGCTCAATGACAGT 59.173 34.615 16.70 13.11 42.17 3.55
241 242 7.260558 ACATATCATTTCAGCTCAATGACAG 57.739 36.000 16.70 12.65 42.17 3.51
242 243 7.634671 AACATATCATTTCAGCTCAATGACA 57.365 32.000 16.70 8.75 42.17 3.58
243 244 7.434307 CCAAACATATCATTTCAGCTCAATGAC 59.566 37.037 16.70 0.00 42.17 3.06
244 245 7.485810 CCAAACATATCATTTCAGCTCAATGA 58.514 34.615 16.69 16.69 43.23 2.57
245 246 6.200286 GCCAAACATATCATTTCAGCTCAATG 59.800 38.462 8.37 8.37 33.55 2.82
246 247 6.278363 GCCAAACATATCATTTCAGCTCAAT 58.722 36.000 0.00 0.00 0.00 2.57
247 248 5.653507 GCCAAACATATCATTTCAGCTCAA 58.346 37.500 0.00 0.00 0.00 3.02
248 249 4.201940 CGCCAAACATATCATTTCAGCTCA 60.202 41.667 0.00 0.00 0.00 4.26
249 250 4.201950 ACGCCAAACATATCATTTCAGCTC 60.202 41.667 0.00 0.00 0.00 4.09
250 251 3.696051 ACGCCAAACATATCATTTCAGCT 59.304 39.130 0.00 0.00 0.00 4.24
251 252 3.792956 CACGCCAAACATATCATTTCAGC 59.207 43.478 0.00 0.00 0.00 4.26
252 253 3.792956 GCACGCCAAACATATCATTTCAG 59.207 43.478 0.00 0.00 0.00 3.02
253 254 3.730362 CGCACGCCAAACATATCATTTCA 60.730 43.478 0.00 0.00 0.00 2.69
254 255 2.783284 CGCACGCCAAACATATCATTTC 59.217 45.455 0.00 0.00 0.00 2.17
255 256 2.796304 CGCACGCCAAACATATCATTT 58.204 42.857 0.00 0.00 0.00 2.32
256 257 1.533756 GCGCACGCCAAACATATCATT 60.534 47.619 0.30 0.00 34.56 2.57
257 258 0.029300 GCGCACGCCAAACATATCAT 59.971 50.000 0.30 0.00 34.56 2.45
258 259 1.427419 GCGCACGCCAAACATATCA 59.573 52.632 0.30 0.00 34.56 2.15
259 260 4.285291 GCGCACGCCAAACATATC 57.715 55.556 0.30 0.00 34.56 1.63
376 379 2.357952 TGTCGTGTGTATAGCAGCCTAG 59.642 50.000 0.00 0.00 0.00 3.02
377 380 2.371306 TGTCGTGTGTATAGCAGCCTA 58.629 47.619 0.00 0.00 0.00 3.93
378 381 1.182667 TGTCGTGTGTATAGCAGCCT 58.817 50.000 0.00 0.00 0.00 4.58
379 382 1.927174 CTTGTCGTGTGTATAGCAGCC 59.073 52.381 0.00 0.00 0.00 4.85
380 383 2.876091 TCTTGTCGTGTGTATAGCAGC 58.124 47.619 0.00 0.00 0.00 5.25
381 384 4.268644 CCAATCTTGTCGTGTGTATAGCAG 59.731 45.833 0.00 0.00 0.00 4.24
382 385 4.081917 TCCAATCTTGTCGTGTGTATAGCA 60.082 41.667 0.00 0.00 0.00 3.49
383 386 4.267928 GTCCAATCTTGTCGTGTGTATAGC 59.732 45.833 0.00 0.00 0.00 2.97
384 387 4.499399 CGTCCAATCTTGTCGTGTGTATAG 59.501 45.833 0.00 0.00 0.00 1.31
385 388 4.156373 TCGTCCAATCTTGTCGTGTGTATA 59.844 41.667 5.27 0.00 0.00 1.47
386 389 3.057104 TCGTCCAATCTTGTCGTGTGTAT 60.057 43.478 5.27 0.00 0.00 2.29
387 390 2.293955 TCGTCCAATCTTGTCGTGTGTA 59.706 45.455 5.27 0.00 0.00 2.90
388 391 1.067974 TCGTCCAATCTTGTCGTGTGT 59.932 47.619 5.27 0.00 0.00 3.72
389 392 1.778334 TCGTCCAATCTTGTCGTGTG 58.222 50.000 5.27 0.00 0.00 3.82
390 393 2.231478 AGATCGTCCAATCTTGTCGTGT 59.769 45.455 0.00 0.00 31.89 4.49
391 394 2.881074 AGATCGTCCAATCTTGTCGTG 58.119 47.619 0.00 0.00 31.89 4.35
392 395 3.594603 AAGATCGTCCAATCTTGTCGT 57.405 42.857 0.00 0.00 42.88 4.34
393 396 3.062639 CCAAAGATCGTCCAATCTTGTCG 59.937 47.826 0.22 0.00 43.53 4.35
394 397 4.093556 GTCCAAAGATCGTCCAATCTTGTC 59.906 45.833 0.22 0.00 43.53 3.18
395 398 4.003648 GTCCAAAGATCGTCCAATCTTGT 58.996 43.478 0.22 0.00 43.53 3.16
396 399 3.062639 CGTCCAAAGATCGTCCAATCTTG 59.937 47.826 0.22 0.00 43.53 3.02
397 400 3.056107 TCGTCCAAAGATCGTCCAATCTT 60.056 43.478 0.00 0.00 45.67 2.40
398 401 2.496070 TCGTCCAAAGATCGTCCAATCT 59.504 45.455 0.00 0.00 37.61 2.40
399 402 2.888594 TCGTCCAAAGATCGTCCAATC 58.111 47.619 0.00 0.00 0.00 2.67
400 403 3.198068 CATCGTCCAAAGATCGTCCAAT 58.802 45.455 0.00 0.00 0.00 3.16
401 404 2.616960 CATCGTCCAAAGATCGTCCAA 58.383 47.619 0.00 0.00 0.00 3.53
402 405 1.739035 GCATCGTCCAAAGATCGTCCA 60.739 52.381 0.00 0.00 0.00 4.02
403 406 0.931005 GCATCGTCCAAAGATCGTCC 59.069 55.000 0.00 0.00 0.00 4.79
404 407 1.590238 CTGCATCGTCCAAAGATCGTC 59.410 52.381 0.00 0.00 0.00 4.20
405 408 1.645034 CTGCATCGTCCAAAGATCGT 58.355 50.000 0.00 0.00 0.00 3.73
406 409 0.302890 GCTGCATCGTCCAAAGATCG 59.697 55.000 0.00 0.00 0.00 3.69
407 410 1.063174 GTGCTGCATCGTCCAAAGATC 59.937 52.381 5.27 0.00 0.00 2.75
408 411 1.089920 GTGCTGCATCGTCCAAAGAT 58.910 50.000 5.27 0.00 0.00 2.40
409 412 0.250252 TGTGCTGCATCGTCCAAAGA 60.250 50.000 5.27 0.00 0.00 2.52
410 413 0.806868 ATGTGCTGCATCGTCCAAAG 59.193 50.000 5.27 0.00 30.67 2.77
411 414 0.804364 GATGTGCTGCATCGTCCAAA 59.196 50.000 5.27 0.00 43.75 3.28
412 415 2.470156 GATGTGCTGCATCGTCCAA 58.530 52.632 5.27 0.00 43.75 3.53
413 416 4.206958 GATGTGCTGCATCGTCCA 57.793 55.556 5.27 0.00 43.75 4.02
419 422 0.536724 TACGGTCAGATGTGCTGCAT 59.463 50.000 5.27 0.00 44.52 3.96
420 423 0.389817 GTACGGTCAGATGTGCTGCA 60.390 55.000 0.00 0.00 44.52 4.41
421 424 0.389817 TGTACGGTCAGATGTGCTGC 60.390 55.000 0.00 0.00 44.52 5.25
422 425 2.299993 ATGTACGGTCAGATGTGCTG 57.700 50.000 0.00 0.00 46.31 4.41
423 426 2.223502 CGTATGTACGGTCAGATGTGCT 60.224 50.000 4.72 0.00 45.30 4.40
424 427 2.117137 CGTATGTACGGTCAGATGTGC 58.883 52.381 4.72 0.00 45.30 4.57
436 439 3.000727 AGGTTTTGCTCTGCGTATGTAC 58.999 45.455 0.00 0.00 0.00 2.90
437 440 3.000041 CAGGTTTTGCTCTGCGTATGTA 59.000 45.455 0.00 0.00 0.00 2.29
438 441 1.806542 CAGGTTTTGCTCTGCGTATGT 59.193 47.619 0.00 0.00 0.00 2.29
439 442 1.131126 CCAGGTTTTGCTCTGCGTATG 59.869 52.381 0.00 0.00 0.00 2.39
440 443 1.003118 TCCAGGTTTTGCTCTGCGTAT 59.997 47.619 0.00 0.00 0.00 3.06
441 444 0.394938 TCCAGGTTTTGCTCTGCGTA 59.605 50.000 0.00 0.00 0.00 4.42
442 445 0.250901 ATCCAGGTTTTGCTCTGCGT 60.251 50.000 0.00 0.00 0.00 5.24
443 446 0.169672 CATCCAGGTTTTGCTCTGCG 59.830 55.000 0.00 0.00 0.00 5.18
444 447 0.108945 GCATCCAGGTTTTGCTCTGC 60.109 55.000 4.99 0.00 33.61 4.26
445 448 1.068055 GTGCATCCAGGTTTTGCTCTG 60.068 52.381 11.42 0.00 37.28 3.35
446 449 1.251251 GTGCATCCAGGTTTTGCTCT 58.749 50.000 11.42 0.00 37.28 4.09
447 450 0.244721 GGTGCATCCAGGTTTTGCTC 59.755 55.000 11.42 8.51 37.28 4.26
448 451 1.526575 CGGTGCATCCAGGTTTTGCT 61.527 55.000 11.42 0.00 37.28 3.91
449 452 1.080569 CGGTGCATCCAGGTTTTGC 60.081 57.895 0.00 5.22 36.91 3.68
450 453 0.240945 GACGGTGCATCCAGGTTTTG 59.759 55.000 0.00 0.00 35.57 2.44
451 454 0.179004 TGACGGTGCATCCAGGTTTT 60.179 50.000 0.00 0.00 35.57 2.43
452 455 0.179004 TTGACGGTGCATCCAGGTTT 60.179 50.000 0.00 0.00 35.57 3.27
453 456 0.038166 ATTGACGGTGCATCCAGGTT 59.962 50.000 0.00 0.00 35.57 3.50
454 457 0.392998 GATTGACGGTGCATCCAGGT 60.393 55.000 0.00 0.00 35.57 4.00
455 458 0.392863 TGATTGACGGTGCATCCAGG 60.393 55.000 0.00 0.00 35.57 4.45
456 459 1.600957 GATGATTGACGGTGCATCCAG 59.399 52.381 0.00 0.00 35.57 3.86
457 460 1.667236 GATGATTGACGGTGCATCCA 58.333 50.000 0.00 0.00 35.57 3.41
458 461 0.947244 GGATGATTGACGGTGCATCC 59.053 55.000 0.00 0.00 46.84 3.51
459 462 0.583438 CGGATGATTGACGGTGCATC 59.417 55.000 0.00 0.00 37.11 3.91
460 463 0.107703 ACGGATGATTGACGGTGCAT 60.108 50.000 0.00 0.00 0.00 3.96
461 464 0.739462 GACGGATGATTGACGGTGCA 60.739 55.000 0.00 0.00 0.00 4.57
462 465 1.752501 CGACGGATGATTGACGGTGC 61.753 60.000 0.00 0.00 0.00 5.01
463 466 0.457853 ACGACGGATGATTGACGGTG 60.458 55.000 0.00 0.00 0.00 4.94
464 467 0.179145 GACGACGGATGATTGACGGT 60.179 55.000 0.00 0.00 0.00 4.83
465 468 0.870307 GGACGACGGATGATTGACGG 60.870 60.000 0.00 0.00 0.00 4.79
466 469 0.100682 AGGACGACGGATGATTGACG 59.899 55.000 0.00 0.00 0.00 4.35
467 470 1.134367 TGAGGACGACGGATGATTGAC 59.866 52.381 0.00 0.00 0.00 3.18
468 471 1.405463 CTGAGGACGACGGATGATTGA 59.595 52.381 0.00 0.00 0.00 2.57
469 472 1.135139 ACTGAGGACGACGGATGATTG 59.865 52.381 0.00 0.00 0.00 2.67
470 473 1.475403 ACTGAGGACGACGGATGATT 58.525 50.000 0.00 0.00 0.00 2.57
471 474 1.405821 GAACTGAGGACGACGGATGAT 59.594 52.381 0.00 0.00 0.00 2.45
472 475 0.809385 GAACTGAGGACGACGGATGA 59.191 55.000 0.00 0.00 0.00 2.92
473 476 0.523546 CGAACTGAGGACGACGGATG 60.524 60.000 0.00 0.00 0.00 3.51
474 477 0.959372 ACGAACTGAGGACGACGGAT 60.959 55.000 0.00 0.00 0.00 4.18
475 478 1.598962 ACGAACTGAGGACGACGGA 60.599 57.895 0.00 0.00 0.00 4.69
476 479 1.442184 CACGAACTGAGGACGACGG 60.442 63.158 0.00 0.00 0.00 4.79
477 480 0.997226 CACACGAACTGAGGACGACG 60.997 60.000 7.44 0.00 0.00 5.12
478 481 0.663568 CCACACGAACTGAGGACGAC 60.664 60.000 7.44 0.00 32.40 4.34
479 482 1.658114 CCACACGAACTGAGGACGA 59.342 57.895 7.44 0.00 32.40 4.20
480 483 1.372997 CCCACACGAACTGAGGACG 60.373 63.158 0.00 0.00 32.40 4.79
481 484 1.668151 GCCCACACGAACTGAGGAC 60.668 63.158 0.00 0.00 32.40 3.85
482 485 1.691195 TTGCCCACACGAACTGAGGA 61.691 55.000 0.00 0.00 32.40 3.71
483 486 0.817634 TTTGCCCACACGAACTGAGG 60.818 55.000 0.00 0.00 0.00 3.86
484 487 0.588252 CTTTGCCCACACGAACTGAG 59.412 55.000 0.00 0.00 0.00 3.35
485 488 0.107410 ACTTTGCCCACACGAACTGA 60.107 50.000 0.00 0.00 0.00 3.41
486 489 0.029300 CACTTTGCCCACACGAACTG 59.971 55.000 0.00 0.00 0.00 3.16
487 490 0.393808 ACACTTTGCCCACACGAACT 60.394 50.000 0.00 0.00 0.00 3.01
488 491 0.028902 GACACTTTGCCCACACGAAC 59.971 55.000 0.00 0.00 0.00 3.95
489 492 1.433053 CGACACTTTGCCCACACGAA 61.433 55.000 0.00 0.00 0.00 3.85
490 493 1.885388 CGACACTTTGCCCACACGA 60.885 57.895 0.00 0.00 0.00 4.35
491 494 2.101209 GACGACACTTTGCCCACACG 62.101 60.000 0.00 0.00 0.00 4.49
492 495 1.647084 GACGACACTTTGCCCACAC 59.353 57.895 0.00 0.00 0.00 3.82
493 496 1.525077 GGACGACACTTTGCCCACA 60.525 57.895 0.00 0.00 0.00 4.17
494 497 2.604174 CGGACGACACTTTGCCCAC 61.604 63.158 0.00 0.00 0.00 4.61
495 498 2.280524 CGGACGACACTTTGCCCA 60.281 61.111 0.00 0.00 0.00 5.36
496 499 3.723348 GCGGACGACACTTTGCCC 61.723 66.667 0.00 0.00 0.00 5.36
497 500 2.970324 TGCGGACGACACTTTGCC 60.970 61.111 0.00 0.00 0.00 4.52
498 501 2.248431 GTGCGGACGACACTTTGC 59.752 61.111 0.00 0.00 35.12 3.68
499 502 1.151777 ACTGTGCGGACGACACTTTG 61.152 55.000 1.60 10.66 38.86 2.77
500 503 0.386476 TACTGTGCGGACGACACTTT 59.614 50.000 1.60 8.52 38.86 2.66
501 504 0.318445 GTACTGTGCGGACGACACTT 60.318 55.000 1.60 8.76 38.86 3.16
502 505 1.170919 AGTACTGTGCGGACGACACT 61.171 55.000 1.60 1.95 38.86 3.55
503 506 0.318445 AAGTACTGTGCGGACGACAC 60.318 55.000 1.60 10.71 38.55 3.67
504 507 0.039798 GAAGTACTGTGCGGACGACA 60.040 55.000 1.60 0.00 0.00 4.35
505 508 0.731855 GGAAGTACTGTGCGGACGAC 60.732 60.000 1.60 0.27 0.00 4.34
506 509 1.582968 GGAAGTACTGTGCGGACGA 59.417 57.895 1.60 0.00 0.00 4.20
507 510 1.800315 CGGAAGTACTGTGCGGACG 60.800 63.158 1.60 0.00 0.00 4.79
508 511 4.164252 CGGAAGTACTGTGCGGAC 57.836 61.111 0.00 0.00 0.00 4.79
511 514 0.525668 CTAGCCGGAAGTACTGTGCG 60.526 60.000 5.05 4.12 0.00 5.34
512 515 0.806492 GCTAGCCGGAAGTACTGTGC 60.806 60.000 5.05 0.00 0.00 4.57
513 516 0.818296 AGCTAGCCGGAAGTACTGTG 59.182 55.000 12.13 0.00 0.00 3.66
514 517 2.299521 CTAGCTAGCCGGAAGTACTGT 58.700 52.381 12.13 0.00 0.00 3.55
515 518 1.001158 GCTAGCTAGCCGGAAGTACTG 60.001 57.143 31.67 0.00 43.39 2.74
516 519 1.320507 GCTAGCTAGCCGGAAGTACT 58.679 55.000 31.67 0.00 43.39 2.73
517 520 3.869747 GCTAGCTAGCCGGAAGTAC 57.130 57.895 31.67 4.05 43.39 2.73
570 573 4.321304 CGTCACTTCATCTTACACCAGTCT 60.321 45.833 0.00 0.00 0.00 3.24
574 577 2.028476 CCCGTCACTTCATCTTACACCA 60.028 50.000 0.00 0.00 0.00 4.17
623 633 1.540363 GCCGTGAAAACTCTGGTCTGA 60.540 52.381 0.00 0.00 0.00 3.27
643 653 2.430921 GTGTGAGACCACGAGCGG 60.431 66.667 0.00 0.00 46.06 5.52
649 659 1.271102 GGTGAGAGAGTGTGAGACCAC 59.729 57.143 0.00 0.00 43.46 4.16
659 673 0.896019 CGGGTGTGAGGTGAGAGAGT 60.896 60.000 0.00 0.00 0.00 3.24
663 677 0.895530 GATTCGGGTGTGAGGTGAGA 59.104 55.000 0.00 0.00 0.00 3.27
664 678 0.608130 TGATTCGGGTGTGAGGTGAG 59.392 55.000 0.00 0.00 0.00 3.51
718 733 0.030638 GTGCTTTGGAACGTGTGCAT 59.969 50.000 0.00 0.00 32.98 3.96
760 778 3.263261 GAGTAGCCAGGCTAGTGTTTTC 58.737 50.000 30.56 13.79 43.78 2.29
774 792 0.452585 GTGAGACCGAGTGAGTAGCC 59.547 60.000 0.00 0.00 0.00 3.93
815 1962 2.539953 CGGAAGAGACGATCCTTCTTCG 60.540 54.545 16.22 11.00 42.20 3.79
867 2014 1.518056 TTTGGCAAGAGGAAGCTGCG 61.518 55.000 0.00 0.00 0.00 5.18
902 2059 4.562789 CGAAACATGCGAGAAGATGTAGAA 59.437 41.667 0.00 0.00 32.40 2.10
910 2067 1.798223 TGGTTCGAAACATGCGAGAAG 59.202 47.619 12.93 0.00 39.14 2.85
924 2081 2.153817 CGTGCGATTCATAGATGGTTCG 59.846 50.000 9.32 9.32 36.42 3.95
925 2082 3.123804 ACGTGCGATTCATAGATGGTTC 58.876 45.455 0.00 0.00 0.00 3.62
926 2083 3.179443 ACGTGCGATTCATAGATGGTT 57.821 42.857 0.00 0.00 0.00 3.67
955 2112 1.469251 GCTGAACGATTGAGCGGAGTA 60.469 52.381 0.00 0.00 35.12 2.59
962 2119 2.464459 GCCCGGCTGAACGATTGAG 61.464 63.158 0.71 0.00 35.47 3.02
1158 2322 2.746277 ACCACCGCGATTGGCTTC 60.746 61.111 22.37 0.00 40.44 3.86
1360 2530 1.982395 TGACCACTAGACTGGGCGG 60.982 63.158 0.00 0.00 43.27 6.13
1370 2540 1.682849 GGTGCCATGGTGACCACTA 59.317 57.895 23.36 0.00 35.80 2.74
1395 2571 4.039092 ATTGGACTGGGCGCTGCT 62.039 61.111 7.64 0.00 0.00 4.24
1550 2726 3.774528 CTGCACTGGGCTCCGCTA 61.775 66.667 2.50 0.00 45.15 4.26
1572 2748 4.338539 AGCGTCGGCGTCTTCGTT 62.339 61.111 12.58 3.56 46.35 3.85
1677 2883 2.340210 TGGCTGCTGTTACTTGTTCA 57.660 45.000 0.00 0.00 0.00 3.18
1704 2910 3.535629 CTCTTCCGCTGGTGCCACA 62.536 63.158 0.00 0.00 35.36 4.17
1845 3051 6.183360 CCATGCATGTCTATGAATCAACCTTT 60.183 38.462 24.58 0.00 36.36 3.11
2465 3719 2.097038 CGTCGCCTTTCAGCTGGAG 61.097 63.158 15.13 12.11 0.00 3.86
2705 3961 1.182667 ATAGTAGCACACACGGAGCA 58.817 50.000 0.00 0.00 0.00 4.26
2707 3963 4.142447 ACAGTTATAGTAGCACACACGGAG 60.142 45.833 0.00 0.00 0.00 4.63
2721 3977 4.708177 CCACTGGGAATGGACAGTTATAG 58.292 47.826 0.00 0.00 45.03 1.31
2722 3978 3.118038 GCCACTGGGAATGGACAGTTATA 60.118 47.826 0.00 0.00 45.03 0.98
2723 3979 2.357154 GCCACTGGGAATGGACAGTTAT 60.357 50.000 0.00 0.00 45.03 1.89
2724 3980 1.004277 GCCACTGGGAATGGACAGTTA 59.996 52.381 0.00 0.00 45.03 2.24
2725 3981 0.251341 GCCACTGGGAATGGACAGTT 60.251 55.000 0.00 0.00 45.03 3.16
2825 4082 7.878127 CCTCTCACAGGTCTTACTCAAAAATTA 59.122 37.037 0.00 0.00 37.53 1.40
2867 4126 3.757248 GAATCCGCGTGCCCCAGAT 62.757 63.158 4.92 0.00 0.00 2.90
2940 4199 6.894828 ACTTTAACTTTACGATGCGAATGTT 58.105 32.000 0.00 0.00 0.00 2.71
3022 4281 9.624697 CTAGCTTTTAATGTGCATTTTTACAGA 57.375 29.630 2.56 0.00 32.50 3.41
3043 4303 2.481952 CGCTTTCAGCAAAAGTCTAGCT 59.518 45.455 11.74 0.00 45.23 3.32
3138 4400 6.833416 ACCACCTTATTATTTTGCTGATGCTA 59.167 34.615 0.00 0.00 40.48 3.49
3146 4408 6.280855 ACCTTCACCACCTTATTATTTTGC 57.719 37.500 0.00 0.00 0.00 3.68
3147 4409 6.663523 AGGACCTTCACCACCTTATTATTTTG 59.336 38.462 0.00 0.00 0.00 2.44
3149 4411 6.402981 AGGACCTTCACCACCTTATTATTT 57.597 37.500 0.00 0.00 0.00 1.40
3150 4412 7.404980 TCTTAGGACCTTCACCACCTTATTATT 59.595 37.037 0.00 0.00 34.42 1.40
3153 4415 5.045797 GTCTTAGGACCTTCACCACCTTATT 60.046 44.000 0.00 0.00 36.53 1.40
3154 4416 4.470304 GTCTTAGGACCTTCACCACCTTAT 59.530 45.833 0.00 0.00 36.53 1.73
3155 4417 3.836562 GTCTTAGGACCTTCACCACCTTA 59.163 47.826 0.00 0.00 36.53 2.69
3157 4419 2.258109 GTCTTAGGACCTTCACCACCT 58.742 52.381 0.00 0.00 36.53 4.00
3158 4420 2.764439 GTCTTAGGACCTTCACCACC 57.236 55.000 0.00 0.00 36.53 4.61
3240 4595 7.607250 TGTGTTGTCTTATGTGGTTTTCTTTT 58.393 30.769 0.00 0.00 0.00 2.27
3254 4609 3.243636 GGAGTCGGAGTTGTGTTGTCTTA 60.244 47.826 0.00 0.00 0.00 2.10
3290 4645 3.368531 CGCTAACCTTGCCTACTCTCTTT 60.369 47.826 0.00 0.00 0.00 2.52
3327 4682 1.802365 GCGTGATAGGTGGTTCGTTTT 59.198 47.619 0.00 0.00 0.00 2.43
3328 4683 1.435577 GCGTGATAGGTGGTTCGTTT 58.564 50.000 0.00 0.00 0.00 3.60
3388 4743 2.351418 TCGACTGTTTGTTGCTGTGAAG 59.649 45.455 0.00 0.00 0.00 3.02
3421 4776 3.549221 GGCTCTTCTTCTCCGTCTTATCG 60.549 52.174 0.00 0.00 0.00 2.92
3424 4779 1.743958 CGGCTCTTCTTCTCCGTCTTA 59.256 52.381 0.00 0.00 37.33 2.10
3525 4880 2.311542 TGTTCCCATTGGTGCTTCCTAT 59.688 45.455 1.20 0.00 37.07 2.57
3590 4945 3.486383 TCAATTTCTTCGGGTGAAAGCT 58.514 40.909 0.00 0.00 36.94 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.