Multiple sequence alignment - TraesCS4A01G200700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G200700 chr4A 100.000 6779 0 0 1 6779 489425392 489432170 0.000000e+00 12519.0
1 TraesCS4A01G200700 chr4B 95.149 6081 199 34 350 6396 130633460 130627442 0.000000e+00 9507.0
2 TraesCS4A01G200700 chr4B 94.309 246 10 4 6537 6779 130627251 130627007 2.310000e-99 374.0
3 TraesCS4A01G200700 chr4B 85.455 165 15 3 1 165 130637134 130636979 5.440000e-36 163.0
4 TraesCS4A01G200700 chr4B 93.458 107 6 1 168 274 130636755 130636650 2.530000e-34 158.0
5 TraesCS4A01G200700 chr4B 96.610 59 2 0 261 319 130635107 130635049 1.560000e-16 99.0
6 TraesCS4A01G200700 chr4B 97.143 35 0 1 315 348 130633518 130633484 2.640000e-04 58.4
7 TraesCS4A01G200700 chr4D 97.346 2562 59 3 2897 5449 93079207 93076646 0.000000e+00 4346.0
8 TraesCS4A01G200700 chr4D 91.966 2813 100 57 168 2901 93082131 93079366 0.000000e+00 3827.0
9 TraesCS4A01G200700 chr4D 91.821 1027 56 13 5431 6454 93076635 93075634 0.000000e+00 1406.0
10 TraesCS4A01G200700 chr4D 96.281 242 7 1 6538 6779 93071993 93071754 4.930000e-106 396.0
11 TraesCS4A01G200700 chr4D 91.358 162 10 2 3 164 93082512 93082355 1.140000e-52 219.0
12 TraesCS4A01G200700 chr1B 93.905 886 47 6 1302 2182 663287744 663286861 0.000000e+00 1330.0
13 TraesCS4A01G200700 chr5B 92.381 105 8 0 995 1099 225542203 225542099 4.240000e-32 150.0
14 TraesCS4A01G200700 chr5A 92.381 105 8 0 995 1099 275109119 275109015 4.240000e-32 150.0
15 TraesCS4A01G200700 chr5D 93.000 100 7 0 1000 1099 212005141 212005042 5.480000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G200700 chr4A 489425392 489432170 6778 False 12519.000000 12519 100.000000 1 6779 1 chr4A.!!$F1 6778
1 TraesCS4A01G200700 chr4B 130627007 130637134 10127 True 1726.566667 9507 93.687333 1 6779 6 chr4B.!!$R1 6778
2 TraesCS4A01G200700 chr4D 93071754 93082512 10758 True 2038.800000 4346 93.754400 3 6779 5 chr4D.!!$R1 6776
3 TraesCS4A01G200700 chr1B 663286861 663287744 883 True 1330.000000 1330 93.905000 1302 2182 1 chr1B.!!$R1 880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 3710 0.259938 GAGGGAATGGAATGGTGGCT 59.740 55.000 0.00 0.0 0.00 4.75 F
802 4210 0.319641 GGCGCCTAAGATACCCTTCG 60.320 60.000 22.15 0.0 36.34 3.79 F
987 4395 0.530288 GACTCTGACTCTGACCCTGC 59.470 60.000 0.00 0.0 0.00 4.85 F
990 4398 0.613292 TCTGACTCTGACCCTGCCTC 60.613 60.000 0.00 0.0 0.00 4.70 F
2159 5579 1.388093 CGTTGATCTGTCTTGAGTGCG 59.612 52.381 0.00 0.0 0.00 5.34 F
3163 6748 0.244721 GTGCCTCAAACATCCAAGCC 59.755 55.000 0.00 0.0 0.00 4.35 F
4573 8161 2.154462 TCAGCTTCTAACAGCAAAGGC 58.846 47.619 0.00 0.0 42.84 4.35 F
5079 8672 1.555075 GGCAGTGAGAATGGTCCTGTA 59.445 52.381 0.00 0.0 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1259 4667 1.391485 CATCAGTTCCGAGCTCAAACG 59.609 52.381 15.40 12.69 0.00 3.60 R
2146 5566 1.725641 TTATGGCGCACTCAAGACAG 58.274 50.000 10.83 0.00 0.00 3.51 R
2689 6110 2.814280 AACTCCAATACTATCCGGCG 57.186 50.000 0.00 0.00 0.00 6.46 R
2773 6194 3.747388 GCCACCCTTTAGCAGCATACATA 60.747 47.826 0.00 0.00 0.00 2.29 R
3485 7070 0.108945 GCACTCCTTGCCAAATCTGC 60.109 55.000 0.00 0.00 46.63 4.26 R
4978 8571 0.455410 GTGCAGCTCAACCACAACAA 59.545 50.000 0.00 0.00 0.00 2.83 R
5499 9122 0.478072 TCCATTCAACAGGTGCCACT 59.522 50.000 0.00 0.00 0.00 4.00 R
6455 10103 2.158559 TGCGATGCACAAAACAGGTAT 58.841 42.857 0.00 0.00 31.71 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.902508 CTTGAAGTAGAGGGCAGGTCA 59.097 52.381 0.00 0.00 0.00 4.02
77 78 0.324368 AGAGGGCAGGTCATACACGA 60.324 55.000 0.00 0.00 0.00 4.35
78 79 0.753262 GAGGGCAGGTCATACACGAT 59.247 55.000 0.00 0.00 0.00 3.73
85 86 4.393680 GGCAGGTCATACACGATTTAAACA 59.606 41.667 0.00 0.00 0.00 2.83
165 166 5.292765 ACATATGAGAACGCCTTAGTCATG 58.707 41.667 10.38 0.00 0.00 3.07
166 167 5.069119 ACATATGAGAACGCCTTAGTCATGA 59.931 40.000 10.38 0.00 0.00 3.07
204 429 5.176590 GCTCCTATGTCTCTAAATTTGCTCG 59.823 44.000 0.00 0.00 0.00 5.03
348 3669 1.004080 CCTCTGTGTCCAGTGCAGG 60.004 63.158 0.00 0.00 39.82 4.85
350 3671 1.459348 TCTGTGTCCAGTGCAGGGA 60.459 57.895 2.91 2.91 39.82 4.20
351 3672 1.004080 CTGTGTCCAGTGCAGGGAG 60.004 63.158 7.28 0.00 34.44 4.30
354 3696 2.607750 GTCCAGTGCAGGGAGGGA 60.608 66.667 7.28 0.00 34.44 4.20
356 3698 1.229951 TCCAGTGCAGGGAGGGAAT 60.230 57.895 2.91 0.00 0.00 3.01
368 3710 0.259938 GAGGGAATGGAATGGTGGCT 59.740 55.000 0.00 0.00 0.00 4.75
437 3779 3.440173 AGATGATGGTGGTAAACAAAGCG 59.560 43.478 0.00 0.00 0.00 4.68
476 3818 1.304509 GCACCAAAGCCAGAGAGAGC 61.305 60.000 0.00 0.00 0.00 4.09
487 3833 0.552848 AGAGAGAGCCCAGAGAGAGG 59.447 60.000 0.00 0.00 0.00 3.69
516 3885 2.361789 GAGGACTACTCTTCTCGCAGT 58.638 52.381 0.00 0.00 43.14 4.40
802 4210 0.319641 GGCGCCTAAGATACCCTTCG 60.320 60.000 22.15 0.00 36.34 3.79
808 4216 3.703420 CCTAAGATACCCTTCGTTCACG 58.297 50.000 0.00 0.00 41.45 4.35
809 4217 2.005971 AAGATACCCTTCGTTCACGC 57.994 50.000 0.00 0.00 39.60 5.34
810 4218 1.183549 AGATACCCTTCGTTCACGCT 58.816 50.000 0.00 0.00 39.60 5.07
811 4219 1.135083 AGATACCCTTCGTTCACGCTG 60.135 52.381 0.00 0.00 39.60 5.18
840 4248 1.369839 CTACCTCTCGCACTCGCTCA 61.370 60.000 0.00 0.00 35.30 4.26
841 4249 0.748367 TACCTCTCGCACTCGCTCAT 60.748 55.000 0.00 0.00 35.30 2.90
845 4253 1.515088 CTCGCACTCGCTCATTCGT 60.515 57.895 0.00 0.00 35.30 3.85
934 4342 2.820197 GTGCTAGGGTTTTCCTTCTTGG 59.180 50.000 0.00 0.00 45.47 3.61
944 4352 1.078848 CCTTCTTGGCCGTCCTCTG 60.079 63.158 0.00 0.00 0.00 3.35
973 4381 2.422597 CGTCTGACTGACTCTGACTCT 58.577 52.381 6.21 0.00 42.80 3.24
974 4382 2.159430 CGTCTGACTGACTCTGACTCTG 59.841 54.545 6.21 0.00 42.80 3.35
975 4383 3.407698 GTCTGACTGACTCTGACTCTGA 58.592 50.000 0.00 0.00 42.10 3.27
976 4384 3.188460 GTCTGACTGACTCTGACTCTGAC 59.812 52.174 0.00 0.00 42.10 3.51
977 4385 3.072330 TCTGACTGACTCTGACTCTGACT 59.928 47.826 0.00 0.00 0.00 3.41
978 4386 3.407698 TGACTGACTCTGACTCTGACTC 58.592 50.000 0.00 0.00 0.00 3.36
979 4387 3.072330 TGACTGACTCTGACTCTGACTCT 59.928 47.826 0.00 0.00 0.00 3.24
980 4388 3.411446 ACTGACTCTGACTCTGACTCTG 58.589 50.000 0.00 0.00 0.00 3.35
981 4389 3.072330 ACTGACTCTGACTCTGACTCTGA 59.928 47.826 6.52 0.00 0.00 3.27
982 4390 3.407698 TGACTCTGACTCTGACTCTGAC 58.592 50.000 0.00 0.00 0.00 3.51
983 4391 2.747446 GACTCTGACTCTGACTCTGACC 59.253 54.545 0.00 0.00 0.00 4.02
984 4392 2.091541 CTCTGACTCTGACTCTGACCC 58.908 57.143 0.00 0.00 0.00 4.46
985 4393 1.707989 TCTGACTCTGACTCTGACCCT 59.292 52.381 0.00 0.00 0.00 4.34
986 4394 1.818060 CTGACTCTGACTCTGACCCTG 59.182 57.143 0.00 0.00 0.00 4.45
987 4395 0.530288 GACTCTGACTCTGACCCTGC 59.470 60.000 0.00 0.00 0.00 4.85
988 4396 0.902516 ACTCTGACTCTGACCCTGCC 60.903 60.000 0.00 0.00 0.00 4.85
989 4397 0.614415 CTCTGACTCTGACCCTGCCT 60.614 60.000 0.00 0.00 0.00 4.75
990 4398 0.613292 TCTGACTCTGACCCTGCCTC 60.613 60.000 0.00 0.00 0.00 4.70
1157 4565 4.142609 TCTGTGCTGTTTCTTCTGTTCT 57.857 40.909 0.00 0.00 0.00 3.01
1158 4566 3.873361 TCTGTGCTGTTTCTTCTGTTCTG 59.127 43.478 0.00 0.00 0.00 3.02
1159 4567 3.609853 TGTGCTGTTTCTTCTGTTCTGT 58.390 40.909 0.00 0.00 0.00 3.41
1160 4568 4.009675 TGTGCTGTTTCTTCTGTTCTGTT 58.990 39.130 0.00 0.00 0.00 3.16
1161 4569 4.094887 TGTGCTGTTTCTTCTGTTCTGTTC 59.905 41.667 0.00 0.00 0.00 3.18
1162 4570 3.627577 TGCTGTTTCTTCTGTTCTGTTCC 59.372 43.478 0.00 0.00 0.00 3.62
1166 4574 4.080582 TGTTTCTTCTGTTCTGTTCCCTGA 60.081 41.667 0.00 0.00 0.00 3.86
1215 4623 5.470098 GCTAGTTTGACACTGGAAGATTCAA 59.530 40.000 0.00 0.00 36.01 2.69
1216 4624 6.348050 GCTAGTTTGACACTGGAAGATTCAAG 60.348 42.308 0.00 0.00 38.67 3.02
1217 4625 5.440610 AGTTTGACACTGGAAGATTCAAGT 58.559 37.500 0.00 0.00 42.12 3.16
1259 4667 4.035558 TCATCATTTCGTTAGCAATGGAGC 59.964 41.667 0.00 0.00 32.95 4.70
1293 4701 3.091633 ACTGATGGCTTGGCACTTATT 57.908 42.857 0.00 0.00 0.00 1.40
1300 4708 3.010138 TGGCTTGGCACTTATTAGGAGTT 59.990 43.478 0.00 0.00 0.00 3.01
1352 4764 3.564352 CCCCTGAACTTGGCTTCCTATTT 60.564 47.826 0.00 0.00 0.00 1.40
1384 4796 3.721087 TCAGGAATTTGGTCCCTCTTC 57.279 47.619 0.00 0.00 38.59 2.87
1390 4802 5.313506 AGGAATTTGGTCCCTCTTCTTAGTT 59.686 40.000 0.00 0.00 38.59 2.24
1627 5039 6.017400 CATAGCGATGCCATATTTCCTTTT 57.983 37.500 0.00 0.00 0.00 2.27
1856 5273 1.617850 GATGATCACGGGCTCTCATCT 59.382 52.381 13.97 0.00 40.41 2.90
2028 5447 1.708993 TTGGAACTCAGTGGCCTGCT 61.709 55.000 3.32 0.00 38.66 4.24
2159 5579 1.388093 CGTTGATCTGTCTTGAGTGCG 59.612 52.381 0.00 0.00 0.00 5.34
2329 5750 6.615088 CATTAAGGTGAGTGGAATTGAACAG 58.385 40.000 0.00 0.00 0.00 3.16
2362 5783 4.888326 AATTATTTGACCCTTGCTTGCA 57.112 36.364 0.00 0.00 0.00 4.08
2378 5799 4.951715 TGCTTGCATCTGGAACTCAATAAT 59.048 37.500 0.00 0.00 0.00 1.28
2415 5836 5.107298 GCAGACTATTGCGATTATTCCTGTC 60.107 44.000 0.00 0.00 33.90 3.51
2497 5918 5.604758 ATGCATGCTAGAAGTGTAGAGAA 57.395 39.130 20.33 0.00 0.00 2.87
2500 5921 6.045318 TGCATGCTAGAAGTGTAGAGAAATC 58.955 40.000 20.33 0.00 0.00 2.17
2515 5936 6.978674 AGAGAAATCGTGTTCCCTATATCA 57.021 37.500 0.00 0.00 0.00 2.15
2620 6041 3.179830 GTCACGCTGTTGACTATGGTAG 58.820 50.000 3.43 0.00 42.36 3.18
2623 6044 3.612860 CACGCTGTTGACTATGGTAGAAC 59.387 47.826 0.00 0.00 0.00 3.01
2689 6110 7.524912 CATCATGCTAAATATTGTACTCCTGC 58.475 38.462 0.00 0.00 0.00 4.85
2769 6190 2.494870 AGAATGCAAACTCATGGCTTCC 59.505 45.455 0.00 0.00 0.00 3.46
2773 6194 2.699846 TGCAAACTCATGGCTTCCTTTT 59.300 40.909 0.00 0.00 0.00 2.27
2828 6249 4.993584 CCTCTATATGTTCATCAGTGGTGC 59.006 45.833 0.00 0.00 0.00 5.01
2852 6273 6.387465 CAATCAGAATGTTCTCTGTTGCAAT 58.613 36.000 0.59 0.00 42.93 3.56
2859 6280 6.839124 ATGTTCTCTGTTGCAATGGAATAA 57.161 33.333 0.59 0.00 0.00 1.40
2892 6313 7.950512 TGTTGACATGTAATCAGTTTTTCCAT 58.049 30.769 0.00 0.00 0.00 3.41
3163 6748 0.244721 GTGCCTCAAACATCCAAGCC 59.755 55.000 0.00 0.00 0.00 4.35
3196 6781 3.693085 CCTTCAGTCAATTCCCAGTGATG 59.307 47.826 0.00 0.00 27.71 3.07
3335 6920 4.013728 TGGCAAGCCTAACGATATGTTTT 58.986 39.130 12.96 0.00 42.09 2.43
3381 6966 5.979288 AGTCGACTTGGAAGTAATACACT 57.021 39.130 13.58 0.00 39.88 3.55
3397 6982 3.131709 ACACTGAGTGCTGCAATAAGT 57.868 42.857 14.08 14.08 36.98 2.24
3415 7000 4.387026 AAGTTCTGATTTGGTCCCATCA 57.613 40.909 1.77 1.77 0.00 3.07
3485 7070 4.000988 ACAGTTAGAATTTGGTAGCGGTG 58.999 43.478 0.00 0.00 0.00 4.94
3517 7102 2.350522 AGGAGTGCACTGCTAAAATCG 58.649 47.619 36.10 0.00 43.07 3.34
3800 7388 2.813754 CGCCAAGAAAGGTCATCTGAAA 59.186 45.455 0.00 0.00 0.00 2.69
3808 7396 5.247110 AGAAAGGTCATCTGAAAGTGCTCTA 59.753 40.000 0.00 0.00 33.76 2.43
3831 7419 5.609423 ACCTGTATCTTCTCAATCTGATGC 58.391 41.667 0.00 0.00 0.00 3.91
3859 7447 5.876460 GGTTTCTAATTGCTTGAATGGCATT 59.124 36.000 13.54 13.54 39.54 3.56
3913 7501 6.976349 GTCATATGCAGAAAGATCAAAATGCA 59.024 34.615 15.14 15.14 46.50 3.96
3914 7502 7.490079 GTCATATGCAGAAAGATCAAAATGCAA 59.510 33.333 16.28 8.89 45.69 4.08
3980 7568 2.811410 AGAATGTGGATGGTTGCATGT 58.189 42.857 0.00 0.00 0.00 3.21
4045 7633 5.132502 CAGCCAACATGGGATAATGACTTA 58.867 41.667 0.00 0.00 38.19 2.24
4087 7675 7.121168 TCTGAATTTCATCAGTTGGGTCATAAC 59.879 37.037 0.00 0.00 45.65 1.89
4132 7720 4.577693 TCCTGTGATGCAAAATCTCATAGC 59.422 41.667 5.70 0.00 29.68 2.97
4148 7736 5.241285 TCTCATAGCTTAGACAGAGATGCAG 59.759 44.000 0.00 0.00 0.00 4.41
4207 7795 7.148641 TCTTCAGTTCACTAGACAATGACTTC 58.851 38.462 0.00 0.00 0.00 3.01
4434 8022 6.169094 AGAATGAGTCCACACAGATTGTTAG 58.831 40.000 0.00 0.00 35.67 2.34
4501 8089 6.044682 CCAAAATAATGGAGCACAGAAATCC 58.955 40.000 0.00 0.00 43.54 3.01
4573 8161 2.154462 TCAGCTTCTAACAGCAAAGGC 58.846 47.619 0.00 0.00 42.84 4.35
4648 8236 2.435938 GCACGGCCAAAGGATCGA 60.436 61.111 2.24 0.00 0.00 3.59
4978 8571 9.528489 TTTGGTTATATAGAAAGAAAGCTGGTT 57.472 29.630 0.00 0.00 0.00 3.67
5038 8631 8.273780 AGATTGAAAGATGTCCTTATGTTGTC 57.726 34.615 0.00 0.00 34.00 3.18
5070 8663 4.833478 ACAGATACTTGGCAGTGAGAAT 57.167 40.909 0.00 0.00 34.06 2.40
5079 8672 1.555075 GGCAGTGAGAATGGTCCTGTA 59.445 52.381 0.00 0.00 0.00 2.74
5217 8810 1.985473 TGGTTCAAGATGCTGCTGTT 58.015 45.000 0.00 0.00 0.00 3.16
5262 8856 4.998033 TGTTTACCAACAATCGCATGTAGA 59.002 37.500 0.00 0.00 40.10 2.59
5361 8955 4.460382 GCTGATTTCATCAAAGGACTTGGA 59.540 41.667 0.00 0.00 39.11 3.53
5406 9000 9.401873 GTAATGGAAGCACGTAAAAGTAAAATT 57.598 29.630 0.00 0.00 0.00 1.82
5412 9006 4.150980 GCACGTAAAAGTAAAATTTGGGCC 59.849 41.667 0.00 0.00 0.00 5.80
5476 9099 6.956435 AGGGTCATCACATCATTAGAGCTATA 59.044 38.462 0.00 0.00 0.00 1.31
5499 9122 4.219070 AGAATGCTGCTGCTGATTTTTGTA 59.781 37.500 17.00 0.00 40.48 2.41
5500 9123 3.564235 TGCTGCTGCTGATTTTTGTAG 57.436 42.857 17.00 0.00 40.48 2.74
5503 9126 3.829948 CTGCTGCTGATTTTTGTAGTGG 58.170 45.455 0.00 0.00 0.00 4.00
5530 9153 5.991606 CCTGTTGAATGGATTTCTATCGCTA 59.008 40.000 0.00 0.00 35.23 4.26
5571 9194 0.249911 ACTTGCTGGTTGGAGTCGAC 60.250 55.000 7.70 7.70 0.00 4.20
5585 9208 4.036352 GGAGTCGACGAATAACACTGATC 58.964 47.826 10.46 0.00 0.00 2.92
5631 9254 0.470766 TACAGGCAAACAGGGACGTT 59.529 50.000 0.00 0.00 0.00 3.99
5804 9427 0.975040 GAGAGAGCCCTCAGCCTCAA 60.975 60.000 0.00 0.00 45.47 3.02
5935 9558 2.476534 AATGCGCCACTTGCTTTCCG 62.477 55.000 4.18 0.00 38.05 4.30
6039 9664 7.201848 GGGAACATTGATTCAGCTAATGATCAA 60.202 37.037 12.09 12.38 37.89 2.57
6051 9676 4.518211 GCTAATGATCAATTAGGCAGTGCT 59.482 41.667 16.11 3.64 45.49 4.40
6163 9788 2.423538 GCGTTGATAACTGGAAAGCCAT 59.576 45.455 0.00 0.00 44.91 4.40
6180 9805 2.678336 GCCATCCCTTTGTAAGTCTTCG 59.322 50.000 0.00 0.00 0.00 3.79
6182 9807 4.324267 CCATCCCTTTGTAAGTCTTCGTT 58.676 43.478 0.00 0.00 0.00 3.85
6183 9808 4.154195 CCATCCCTTTGTAAGTCTTCGTTG 59.846 45.833 0.00 0.00 0.00 4.10
6241 9866 1.002868 CTTGCAGTGACCTGGGAGG 60.003 63.158 0.00 0.00 42.49 4.30
6272 9897 7.175467 ACATTTTGCTGTGTGATCAGATTTCTA 59.825 33.333 0.00 0.00 37.61 2.10
6278 9903 6.238049 GCTGTGTGATCAGATTTCTATGACAC 60.238 42.308 0.00 0.00 37.61 3.67
6280 9905 8.066612 TGTGTGATCAGATTTCTATGACACTA 57.933 34.615 0.00 0.00 33.00 2.74
6281 9906 8.193438 TGTGTGATCAGATTTCTATGACACTAG 58.807 37.037 0.00 0.00 33.00 2.57
6292 9917 8.902540 TTTCTATGACACTAGATGTTTGTTGT 57.097 30.769 0.00 0.00 43.56 3.32
6319 9944 3.124578 ACATTTTTGGGGTTGATGTGC 57.875 42.857 0.00 0.00 30.37 4.57
6342 9967 3.084039 GTCCAGCAATTCTCCAATGACA 58.916 45.455 0.00 0.00 0.00 3.58
6348 9973 6.053650 CAGCAATTCTCCAATGACATCTCTA 58.946 40.000 0.00 0.00 0.00 2.43
6349 9974 6.018098 CAGCAATTCTCCAATGACATCTCTAC 60.018 42.308 0.00 0.00 0.00 2.59
6350 9975 6.054295 GCAATTCTCCAATGACATCTCTACT 58.946 40.000 0.00 0.00 0.00 2.57
6351 9976 6.018098 GCAATTCTCCAATGACATCTCTACTG 60.018 42.308 0.00 0.00 0.00 2.74
6352 9977 5.604758 TTCTCCAATGACATCTCTACTGG 57.395 43.478 0.00 0.00 0.00 4.00
6353 9978 4.614475 TCTCCAATGACATCTCTACTGGT 58.386 43.478 2.33 0.00 0.00 4.00
6354 9979 4.403752 TCTCCAATGACATCTCTACTGGTG 59.596 45.833 2.33 0.83 0.00 4.17
6355 9980 3.452264 TCCAATGACATCTCTACTGGTGG 59.548 47.826 2.33 0.00 0.00 4.61
6357 9982 4.080919 CCAATGACATCTCTACTGGTGGAA 60.081 45.833 0.00 0.00 0.00 3.53
6358 9983 4.744795 ATGACATCTCTACTGGTGGAAC 57.255 45.455 0.00 0.00 0.00 3.62
6359 9984 3.506398 TGACATCTCTACTGGTGGAACA 58.494 45.455 0.00 0.00 39.98 3.18
6384 10032 5.711976 CCAGACTTGGTATGATTGTTCCTTT 59.288 40.000 0.00 0.00 39.79 3.11
6407 10055 9.342308 CTTTTATTACCTTCTGCCATCATCTTA 57.658 33.333 0.00 0.00 0.00 2.10
6414 10062 5.826737 CCTTCTGCCATCATCTTATCTTGTT 59.173 40.000 0.00 0.00 0.00 2.83
6415 10063 6.017275 CCTTCTGCCATCATCTTATCTTGTTC 60.017 42.308 0.00 0.00 0.00 3.18
6416 10064 5.993055 TCTGCCATCATCTTATCTTGTTCA 58.007 37.500 0.00 0.00 0.00 3.18
6417 10065 6.598503 TCTGCCATCATCTTATCTTGTTCAT 58.401 36.000 0.00 0.00 0.00 2.57
6418 10066 6.485648 TCTGCCATCATCTTATCTTGTTCATG 59.514 38.462 0.00 0.00 0.00 3.07
6419 10067 6.358991 TGCCATCATCTTATCTTGTTCATGA 58.641 36.000 0.00 0.00 0.00 3.07
6420 10068 6.485648 TGCCATCATCTTATCTTGTTCATGAG 59.514 38.462 0.00 0.00 0.00 2.90
6459 10107 8.211629 AGGTAAACACCTTCATTATCTGATACC 58.788 37.037 0.00 0.00 36.56 2.73
6460 10108 8.211629 GGTAAACACCTTCATTATCTGATACCT 58.788 37.037 0.00 0.00 32.72 3.08
6461 10109 9.046296 GTAAACACCTTCATTATCTGATACCTG 57.954 37.037 0.00 0.00 32.72 4.00
6462 10110 6.814954 ACACCTTCATTATCTGATACCTGT 57.185 37.500 0.00 0.00 32.72 4.00
6464 10112 7.633789 ACACCTTCATTATCTGATACCTGTTT 58.366 34.615 0.00 0.00 32.72 2.83
6465 10113 8.109634 ACACCTTCATTATCTGATACCTGTTTT 58.890 33.333 0.00 0.00 32.72 2.43
6466 10114 8.400947 CACCTTCATTATCTGATACCTGTTTTG 58.599 37.037 0.00 0.00 32.72 2.44
6468 10116 8.400947 CCTTCATTATCTGATACCTGTTTTGTG 58.599 37.037 0.00 0.00 32.72 3.33
6470 10118 6.883756 TCATTATCTGATACCTGTTTTGTGCA 59.116 34.615 0.00 0.00 0.00 4.57
6471 10119 7.557358 TCATTATCTGATACCTGTTTTGTGCAT 59.443 33.333 0.00 0.00 0.00 3.96
6472 10120 5.824904 ATCTGATACCTGTTTTGTGCATC 57.175 39.130 0.00 0.00 0.00 3.91
6473 10121 3.684305 TCTGATACCTGTTTTGTGCATCG 59.316 43.478 0.00 0.00 0.00 3.84
6474 10122 2.161410 TGATACCTGTTTTGTGCATCGC 59.839 45.455 0.00 0.00 0.00 4.58
6475 10123 1.598882 TACCTGTTTTGTGCATCGCA 58.401 45.000 0.00 0.00 35.60 5.10
6477 10125 1.340889 ACCTGTTTTGTGCATCGCAAT 59.659 42.857 0.00 0.00 41.47 3.56
6478 10126 2.556189 ACCTGTTTTGTGCATCGCAATA 59.444 40.909 0.00 0.00 41.47 1.90
6479 10127 3.005261 ACCTGTTTTGTGCATCGCAATAA 59.995 39.130 0.00 0.00 41.47 1.40
6480 10128 4.175516 CCTGTTTTGTGCATCGCAATAAT 58.824 39.130 0.00 0.00 41.47 1.28
6481 10129 4.031991 CCTGTTTTGTGCATCGCAATAATG 59.968 41.667 0.00 0.00 41.47 1.90
6497 10145 6.551385 CAATAATGCAGTCTGGTTATCCTC 57.449 41.667 1.14 0.00 34.23 3.71
6498 10146 3.567478 AATGCAGTCTGGTTATCCTCC 57.433 47.619 1.14 0.00 34.23 4.30
6499 10147 2.254152 TGCAGTCTGGTTATCCTCCT 57.746 50.000 1.14 0.00 34.23 3.69
6500 10148 2.551270 TGCAGTCTGGTTATCCTCCTT 58.449 47.619 1.14 0.00 34.23 3.36
6501 10149 2.912956 TGCAGTCTGGTTATCCTCCTTT 59.087 45.455 1.14 0.00 34.23 3.11
6502 10150 3.330701 TGCAGTCTGGTTATCCTCCTTTT 59.669 43.478 1.14 0.00 34.23 2.27
6503 10151 3.942115 GCAGTCTGGTTATCCTCCTTTTC 59.058 47.826 1.14 0.00 34.23 2.29
6504 10152 4.323868 GCAGTCTGGTTATCCTCCTTTTCT 60.324 45.833 1.14 0.00 34.23 2.52
6505 10153 5.104900 GCAGTCTGGTTATCCTCCTTTTCTA 60.105 44.000 1.14 0.00 34.23 2.10
6506 10154 6.576442 GCAGTCTGGTTATCCTCCTTTTCTAA 60.576 42.308 1.14 0.00 34.23 2.10
6507 10155 7.394816 CAGTCTGGTTATCCTCCTTTTCTAAA 58.605 38.462 0.00 0.00 34.23 1.85
6509 10157 8.445588 AGTCTGGTTATCCTCCTTTTCTAAAAA 58.554 33.333 0.00 0.00 34.23 1.94
6546 13751 4.202295 TGGCACAACAATATTTTTCCTGCA 60.202 37.500 12.41 0.00 31.92 4.41
6626 13831 6.575162 ATGAGTTTTGGTTGCTAAAGGTAG 57.425 37.500 0.00 0.00 0.00 3.18
6660 13865 3.778618 TCTCATGCATCTGTTCTCTTCG 58.221 45.455 0.00 0.00 0.00 3.79
6678 13883 1.156736 CGTCCATGGAACTGGAACAC 58.843 55.000 18.20 0.00 46.66 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.984153 TATATACCCCCACGTCCGAGTCG 62.984 56.522 5.29 5.29 0.00 4.18
137 138 4.946784 AAGGCGTTCTCATATGTTTCAC 57.053 40.909 1.90 0.00 0.00 3.18
139 140 5.810587 TGACTAAGGCGTTCTCATATGTTTC 59.189 40.000 1.90 0.00 0.00 2.78
141 142 5.339008 TGACTAAGGCGTTCTCATATGTT 57.661 39.130 1.90 0.00 0.00 2.71
185 410 3.802139 CGCCGAGCAAATTTAGAGACATA 59.198 43.478 0.00 0.00 0.00 2.29
204 429 4.299316 GCGCCATTGTCGATCGCC 62.299 66.667 11.09 0.00 39.91 5.54
303 2084 5.016831 AGGGTAAACTGGGAATTCATTCAC 58.983 41.667 7.93 0.00 40.58 3.18
348 3669 0.756815 GCCACCATTCCATTCCCTCC 60.757 60.000 0.00 0.00 0.00 4.30
350 3671 0.032813 CAGCCACCATTCCATTCCCT 60.033 55.000 0.00 0.00 0.00 4.20
351 3672 1.679559 GCAGCCACCATTCCATTCCC 61.680 60.000 0.00 0.00 0.00 3.97
354 3696 0.685458 GAGGCAGCCACCATTCCATT 60.685 55.000 15.80 0.00 0.00 3.16
356 3698 2.356278 GAGGCAGCCACCATTCCA 59.644 61.111 15.80 0.00 0.00 3.53
437 3779 4.704833 TCTTGTGCTCTGCCGCCC 62.705 66.667 0.00 0.00 0.00 6.13
476 3818 1.143684 CTCTCTCTCCCTCTCTCTGGG 59.856 61.905 0.00 0.00 45.90 4.45
564 3946 2.046314 TTTGTCCGCTAGCTGCCC 60.046 61.111 13.93 1.08 38.78 5.36
809 4217 1.814586 GAGGTAGCAGCAGCAGCAG 60.815 63.158 12.92 0.00 45.49 4.24
810 4218 2.236223 GAGAGGTAGCAGCAGCAGCA 62.236 60.000 12.92 0.00 45.49 4.41
811 4219 1.521234 GAGAGGTAGCAGCAGCAGC 60.521 63.158 3.17 0.46 45.49 5.25
840 4248 0.324943 CAGGAGGTGGGTGAACGAAT 59.675 55.000 0.00 0.00 0.00 3.34
841 4249 1.752198 CAGGAGGTGGGTGAACGAA 59.248 57.895 0.00 0.00 0.00 3.85
845 4253 0.768221 AGAAGCAGGAGGTGGGTGAA 60.768 55.000 0.00 0.00 0.00 3.18
944 4352 2.031163 AGTCAGACGGCACCTTGC 59.969 61.111 0.00 0.00 44.08 4.01
973 4381 1.979155 CGAGGCAGGGTCAGAGTCA 60.979 63.158 0.00 0.00 0.00 3.41
974 4382 1.979693 ACGAGGCAGGGTCAGAGTC 60.980 63.158 0.00 0.00 0.00 3.36
975 4383 2.118513 ACGAGGCAGGGTCAGAGT 59.881 61.111 0.00 0.00 0.00 3.24
976 4384 2.575993 CACGAGGCAGGGTCAGAG 59.424 66.667 0.00 0.00 0.00 3.35
977 4385 2.997315 CCACGAGGCAGGGTCAGA 60.997 66.667 0.00 0.00 0.00 3.27
1098 4506 1.552792 GAGGAGGAAACAGAGGAGGTG 59.447 57.143 0.00 0.00 0.00 4.00
1157 4565 2.230664 ACTGGCAAGTCAGGGAACA 58.769 52.632 6.63 0.00 38.98 3.18
1166 4574 0.693049 AAATCCCGAGACTGGCAAGT 59.307 50.000 0.00 0.00 40.21 3.16
1259 4667 1.391485 CATCAGTTCCGAGCTCAAACG 59.609 52.381 15.40 12.69 0.00 3.60
1293 4701 9.214957 CAAGATAAATACACACACAAACTCCTA 57.785 33.333 0.00 0.00 0.00 2.94
1300 4708 9.539825 AAAATTGCAAGATAAATACACACACAA 57.460 25.926 4.94 0.00 0.00 3.33
1352 4764 4.022068 CCAAATTCCTGAAGCTGCAAGTAA 60.022 41.667 1.02 0.00 35.30 2.24
1384 4796 8.871686 AAAATGCAGGTAAGAAAACAACTAAG 57.128 30.769 0.00 0.00 0.00 2.18
1390 4802 6.045955 GGTGAAAAATGCAGGTAAGAAAACA 58.954 36.000 0.00 0.00 0.00 2.83
1627 5039 4.387026 AGATGGTGAAACAGGGATGAAA 57.613 40.909 0.00 0.00 39.98 2.69
1856 5273 5.538813 TGAGAAGAAAGCAAGTACTACCTCA 59.461 40.000 0.00 0.00 0.00 3.86
2028 5447 6.719370 AGTATGATGCTAGTCCAAAACCAAAA 59.281 34.615 0.00 0.00 0.00 2.44
2146 5566 1.725641 TTATGGCGCACTCAAGACAG 58.274 50.000 10.83 0.00 0.00 3.51
2329 5750 7.836842 AGGGTCAAATAATTTACCATTCACAC 58.163 34.615 0.00 0.00 33.46 3.82
2362 5783 8.641498 ACAAGAAACATTATTGAGTTCCAGAT 57.359 30.769 4.64 0.00 0.00 2.90
2378 5799 5.277974 GCAATAGTCTGCAGAACAAGAAACA 60.278 40.000 20.19 0.00 42.17 2.83
2538 5959 8.835467 TCGAAACAATTAAAAACTTCAGACAG 57.165 30.769 0.00 0.00 0.00 3.51
2555 5976 2.869801 CCACACAGCTAACTCGAAACAA 59.130 45.455 0.00 0.00 0.00 2.83
2603 6024 3.845178 TGTTCTACCATAGTCAACAGCG 58.155 45.455 0.00 0.00 29.69 5.18
2663 6084 7.524912 CAGGAGTACAATATTTAGCATGATGC 58.475 38.462 9.89 9.89 45.46 3.91
2689 6110 2.814280 AACTCCAATACTATCCGGCG 57.186 50.000 0.00 0.00 0.00 6.46
2769 6190 6.460123 CCACCCTTTAGCAGCATACATAAAAG 60.460 42.308 0.00 0.00 0.00 2.27
2773 6194 3.747388 GCCACCCTTTAGCAGCATACATA 60.747 47.826 0.00 0.00 0.00 2.29
2828 6249 5.366829 TGCAACAGAGAACATTCTGATTG 57.633 39.130 9.78 10.47 45.95 2.67
2852 6273 8.862325 ACATGTCAACATTTCTAGTTATTCCA 57.138 30.769 0.00 0.00 33.61 3.53
2859 6280 9.507329 AACTGATTACATGTCAACATTTCTAGT 57.493 29.630 0.00 0.00 33.61 2.57
3015 6600 1.941812 GTGTTCTCCACAACCTGCG 59.058 57.895 0.00 0.00 43.92 5.18
3163 6748 2.416747 TGACTGAAGGAATTGTCTGCG 58.583 47.619 0.00 0.00 0.00 5.18
3335 6920 6.795098 ATCACAATAAGACGCTTGTTGTAA 57.205 33.333 23.31 15.84 33.09 2.41
3381 6966 4.006780 TCAGAACTTATTGCAGCACTCA 57.993 40.909 0.00 0.00 0.00 3.41
3397 6982 3.091545 GCTTGATGGGACCAAATCAGAA 58.908 45.455 8.61 0.00 34.43 3.02
3415 7000 0.964358 GCTCCACTGATGCCAAGCTT 60.964 55.000 0.00 0.00 0.00 3.74
3485 7070 0.108945 GCACTCCTTGCCAAATCTGC 60.109 55.000 0.00 0.00 46.63 4.26
3517 7102 7.918562 TGCATAAAAGGATTTCGGTATAAAAGC 59.081 33.333 0.00 0.00 37.28 3.51
3800 7388 4.861196 TGAGAAGATACAGGTAGAGCACT 58.139 43.478 0.00 0.00 0.00 4.40
3808 7396 5.366186 AGCATCAGATTGAGAAGATACAGGT 59.634 40.000 0.00 0.00 0.00 4.00
3831 7419 6.327934 CCATTCAAGCAATTAGAAACCTGAG 58.672 40.000 0.00 0.00 0.00 3.35
3859 7447 6.903534 ACCTACTCAATAGATTCTCTTGGGAA 59.096 38.462 16.21 1.51 31.83 3.97
3913 7501 6.985188 ACACGTGTATCATTTGCTCTATTT 57.015 33.333 21.98 0.00 0.00 1.40
3914 7502 6.675486 GCAACACGTGTATCATTTGCTCTATT 60.675 38.462 25.76 3.44 37.08 1.73
3929 7517 3.409856 GCTCACAGCAACACGTGT 58.590 55.556 17.22 17.22 41.89 4.49
3965 7553 3.126729 GCAACATGCAACCATCCAC 57.873 52.632 0.00 0.00 44.26 4.02
4087 7675 2.097466 GGACACCAAATTAGCATCCACG 59.903 50.000 0.00 0.00 0.00 4.94
4132 7720 3.797451 TCAGCTGCATCTCTGTCTAAG 57.203 47.619 9.47 0.00 0.00 2.18
4148 7736 2.100605 AGACAAATCGAGGGTTCAGC 57.899 50.000 0.00 0.00 0.00 4.26
4501 8089 5.011090 TCTCAATCCAAAGACGTATCTGG 57.989 43.478 0.00 0.00 34.48 3.86
4573 8161 5.437289 TTGACTTGCTTTGTGTATCAAGG 57.563 39.130 0.00 0.00 39.97 3.61
4648 8236 6.294787 CCTTTATACGATCCTGTATCAGCTGT 60.295 42.308 14.67 3.75 36.48 4.40
4931 8524 7.094118 ACCAAACAATAAAACGTATAGGCATGT 60.094 33.333 0.00 0.00 0.00 3.21
4978 8571 0.455410 GTGCAGCTCAACCACAACAA 59.545 50.000 0.00 0.00 0.00 2.83
5038 8631 6.447162 TGCCAAGTATCTGTATGAATACTCG 58.553 40.000 2.36 0.00 34.41 4.18
5079 8672 5.163088 ACCACCTTCAAAGTAGTCTTTCCAT 60.163 40.000 0.00 0.00 41.31 3.41
5289 8883 3.256383 CACAAATCATCTGCAGGAAACCA 59.744 43.478 15.13 0.00 0.00 3.67
5361 8955 0.921896 CACCCCTCAGGATGGTCAAT 59.078 55.000 0.00 0.00 39.89 2.57
5406 9000 1.151908 AACAGTAAAGCGGGCCCAA 59.848 52.632 24.92 0.00 0.00 4.12
5412 9006 7.208080 ACTATATTACCTCAACAGTAAAGCGG 58.792 38.462 0.00 0.00 33.63 5.52
5452 9046 4.348863 AGCTCTAATGATGTGATGACCC 57.651 45.455 0.00 0.00 0.00 4.46
5476 9099 3.006537 ACAAAAATCAGCAGCAGCATTCT 59.993 39.130 3.17 0.00 45.49 2.40
5499 9122 0.478072 TCCATTCAACAGGTGCCACT 59.522 50.000 0.00 0.00 0.00 4.00
5500 9123 1.549203 ATCCATTCAACAGGTGCCAC 58.451 50.000 0.00 0.00 0.00 5.01
5503 9126 5.504665 CGATAGAAATCCATTCAACAGGTGC 60.505 44.000 0.00 0.00 40.72 5.01
5538 9161 6.155475 ACCAGCAAGTTAAAACATAAGCAA 57.845 33.333 0.00 0.00 0.00 3.91
5585 9208 7.378194 TGAACATTGAACAATTGAACATACACG 59.622 33.333 13.59 2.33 0.00 4.49
5699 9322 6.428083 TGTTTACACTGTTGGGATTCTCTA 57.572 37.500 0.00 0.00 0.00 2.43
5804 9427 6.434028 TCTTAGCACTTAAATGTTGATTGGCT 59.566 34.615 0.00 0.00 0.00 4.75
6039 9664 3.624777 ACAAGCAATAGCACTGCCTAAT 58.375 40.909 0.00 0.00 45.49 1.73
6051 9676 8.792633 AGCAAAACTAAGATTGTACAAGCAATA 58.207 29.630 24.55 15.65 38.98 1.90
6163 9788 4.675976 TCAACGAAGACTTACAAAGGGA 57.324 40.909 0.00 0.00 0.00 4.20
6180 9805 9.204570 TGCTAACAGTTCTATTTCTAGTTCAAC 57.795 33.333 0.00 0.00 0.00 3.18
6182 9807 9.371136 CATGCTAACAGTTCTATTTCTAGTTCA 57.629 33.333 0.00 0.00 0.00 3.18
6183 9808 9.372369 ACATGCTAACAGTTCTATTTCTAGTTC 57.628 33.333 0.00 0.00 0.00 3.01
6241 9866 4.154737 TGATCACACAGCAAAATGTAGCTC 59.845 41.667 0.00 0.00 39.50 4.09
6272 9897 8.314021 TGATAGACAACAAACATCTAGTGTCAT 58.686 33.333 8.14 1.67 41.14 3.06
6319 9944 3.128242 GTCATTGGAGAATTGCTGGACAG 59.872 47.826 0.00 0.00 0.00 3.51
6361 9986 6.824305 AAAGGAACAATCATACCAAGTCTG 57.176 37.500 0.00 0.00 0.00 3.51
6371 9996 8.470002 GCAGAAGGTAATAAAAGGAACAATCAT 58.530 33.333 0.00 0.00 0.00 2.45
6372 9997 7.093945 GGCAGAAGGTAATAAAAGGAACAATCA 60.094 37.037 0.00 0.00 0.00 2.57
6373 9998 7.093945 TGGCAGAAGGTAATAAAAGGAACAATC 60.094 37.037 0.00 0.00 0.00 2.67
6374 9999 6.723977 TGGCAGAAGGTAATAAAAGGAACAAT 59.276 34.615 0.00 0.00 0.00 2.71
6375 10000 6.071984 TGGCAGAAGGTAATAAAAGGAACAA 58.928 36.000 0.00 0.00 0.00 2.83
6378 10026 6.489603 TGATGGCAGAAGGTAATAAAAGGAA 58.510 36.000 0.00 0.00 0.00 3.36
6384 10032 8.884323 AGATAAGATGATGGCAGAAGGTAATAA 58.116 33.333 0.00 0.00 0.00 1.40
6414 10062 4.212143 CCTTCTTGGTCATGACTCATGA 57.788 45.455 24.50 21.53 46.84 3.07
6439 10087 6.814954 ACAGGTATCAGATAATGAAGGTGT 57.185 37.500 9.82 0.00 42.53 4.16
6445 10093 6.883756 TGCACAAAACAGGTATCAGATAATGA 59.116 34.615 9.82 0.00 43.70 2.57
6454 10102 2.161410 TGCGATGCACAAAACAGGTATC 59.839 45.455 0.00 0.00 31.71 2.24
6455 10103 2.158559 TGCGATGCACAAAACAGGTAT 58.841 42.857 0.00 0.00 31.71 2.73
6459 10107 4.491280 GCATTATTGCGATGCACAAAACAG 60.491 41.667 0.00 0.00 46.96 3.16
6460 10108 3.367327 GCATTATTGCGATGCACAAAACA 59.633 39.130 0.00 0.00 46.96 2.83
6461 10109 3.915067 GCATTATTGCGATGCACAAAAC 58.085 40.909 0.00 0.00 46.96 2.43
6470 10118 7.732976 GGATAACCAGACTGCATTATTGCGAT 61.733 42.308 10.09 0.00 43.09 4.58
6471 10119 6.482698 GGATAACCAGACTGCATTATTGCGA 61.483 44.000 10.09 0.00 43.09 5.10
6472 10120 4.319766 GGATAACCAGACTGCATTATTGCG 60.320 45.833 10.09 3.24 43.09 4.85
6473 10121 4.823989 AGGATAACCAGACTGCATTATTGC 59.176 41.667 10.09 2.60 43.28 3.56
6474 10122 5.471456 GGAGGATAACCAGACTGCATTATTG 59.529 44.000 10.09 0.00 38.94 1.90
6475 10123 5.370880 AGGAGGATAACCAGACTGCATTATT 59.629 40.000 10.09 0.00 38.94 1.40
6477 10125 4.298626 AGGAGGATAACCAGACTGCATTA 58.701 43.478 0.00 0.00 38.94 1.90
6478 10126 3.118531 AGGAGGATAACCAGACTGCATT 58.881 45.455 0.00 0.00 38.94 3.56
6479 10127 2.769209 AGGAGGATAACCAGACTGCAT 58.231 47.619 0.00 0.00 38.94 3.96
6480 10128 2.254152 AGGAGGATAACCAGACTGCA 57.746 50.000 0.00 0.00 38.94 4.41
6481 10129 3.636153 AAAGGAGGATAACCAGACTGC 57.364 47.619 0.00 0.00 38.94 4.40
6483 10131 7.569599 TTTAGAAAAGGAGGATAACCAGACT 57.430 36.000 0.00 0.00 38.94 3.24
6484 10132 8.631480 TTTTTAGAAAAGGAGGATAACCAGAC 57.369 34.615 0.00 0.00 38.94 3.51
6507 10155 8.729805 TGTTGTGCCATATTTCTTTTCTTTTT 57.270 26.923 0.00 0.00 0.00 1.94
6509 10157 8.907222 ATTGTTGTGCCATATTTCTTTTCTTT 57.093 26.923 0.00 0.00 0.00 2.52
6516 10164 9.382275 GGAAAAATATTGTTGTGCCATATTTCT 57.618 29.630 0.00 0.00 30.03 2.52
6517 10165 9.382275 AGGAAAAATATTGTTGTGCCATATTTC 57.618 29.630 0.00 0.00 30.03 2.17
6518 10166 9.165035 CAGGAAAAATATTGTTGTGCCATATTT 57.835 29.630 0.00 0.00 0.00 1.40
6522 10170 4.937015 GCAGGAAAAATATTGTTGTGCCAT 59.063 37.500 9.74 0.00 0.00 4.40
6523 10171 4.202295 TGCAGGAAAAATATTGTTGTGCCA 60.202 37.500 15.25 5.64 0.00 4.92
6524 10172 4.314121 TGCAGGAAAAATATTGTTGTGCC 58.686 39.130 15.25 3.97 0.00 5.01
6526 10174 7.712264 TTCTTGCAGGAAAAATATTGTTGTG 57.288 32.000 9.07 0.00 0.00 3.33
6527 10175 8.776470 CATTTCTTGCAGGAAAAATATTGTTGT 58.224 29.630 25.39 4.70 38.46 3.32
6528 10176 8.991026 TCATTTCTTGCAGGAAAAATATTGTTG 58.009 29.630 25.39 16.69 38.46 3.33
6529 10177 9.558396 TTCATTTCTTGCAGGAAAAATATTGTT 57.442 25.926 25.39 6.08 38.46 2.83
6530 10178 8.992073 GTTCATTTCTTGCAGGAAAAATATTGT 58.008 29.630 25.39 6.77 38.46 2.71
6531 10179 9.211485 AGTTCATTTCTTGCAGGAAAAATATTG 57.789 29.630 25.39 18.56 38.46 1.90
6532 10180 9.211485 CAGTTCATTTCTTGCAGGAAAAATATT 57.789 29.630 25.39 8.16 38.46 1.28
6533 10181 8.370182 ACAGTTCATTTCTTGCAGGAAAAATAT 58.630 29.630 25.39 8.52 38.46 1.28
6535 10183 6.585416 ACAGTTCATTTCTTGCAGGAAAAAT 58.415 32.000 25.39 9.57 38.46 1.82
6546 13751 9.396022 TCTTCTACAGAAAACAGTTCATTTCTT 57.604 29.630 0.00 0.00 41.79 2.52
6678 13883 7.450124 TTGTAGTACTCCTCTTCACTACTTG 57.550 40.000 0.00 0.00 42.41 3.16
6718 13924 9.216117 GAGTATTGTTTTTGGATACTGTACTGT 57.784 33.333 10.46 10.46 36.88 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.