Multiple sequence alignment - TraesCS4A01G200200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G200200 chr4A 100.000 7787 0 0 1 7787 488527980 488535766 0.000000e+00 14380.0
1 TraesCS4A01G200200 chr4A 84.165 581 51 21 2891 3430 488529934 488530514 6.920000e-145 525.0
2 TraesCS4A01G200200 chr4A 84.165 581 51 21 1955 2535 488530870 488531409 6.920000e-145 525.0
3 TraesCS4A01G200200 chr4A 85.714 469 42 13 3081 3528 488529571 488530035 9.150000e-129 472.0
4 TraesCS4A01G200200 chr4A 85.714 469 42 13 1592 2056 488531060 488531507 9.150000e-129 472.0
5 TraesCS4A01G200200 chr4A 88.976 381 30 6 2156 2535 488529568 488529937 1.980000e-125 460.0
6 TraesCS4A01G200200 chr4A 88.976 381 30 6 1589 1958 488530135 488530514 1.980000e-125 460.0
7 TraesCS4A01G200200 chr4A 96.364 55 2 0 1122 1176 597780259 597780313 2.990000e-14 91.6
8 TraesCS4A01G200200 chr4A 94.444 54 2 1 3530 3583 488531002 488531054 1.800000e-11 82.4
9 TraesCS4A01G200200 chr4A 94.444 54 2 1 3023 3075 488531509 488531562 1.800000e-11 82.4
10 TraesCS4A01G200200 chr4A 96.970 33 0 1 249 281 488505122 488505153 4.000000e-03 54.7
11 TraesCS4A01G200200 chr4B 95.939 3349 101 17 3734 7071 131710278 131706954 0.000000e+00 5398.0
12 TraesCS4A01G200200 chr4B 93.750 1792 56 32 289 2060 131714083 131712328 0.000000e+00 2638.0
13 TraesCS4A01G200200 chr4B 93.613 1002 48 7 2748 3737 131711346 131710349 0.000000e+00 1482.0
14 TraesCS4A01G200200 chr4B 95.568 722 31 1 7067 7787 131706831 131706110 0.000000e+00 1155.0
15 TraesCS4A01G200200 chr4B 94.286 525 19 5 2061 2585 131712286 131711773 0.000000e+00 793.0
16 TraesCS4A01G200200 chr4B 84.364 582 54 15 1955 2535 131711203 131710658 3.200000e-148 536.0
17 TraesCS4A01G200200 chr4B 85.477 482 46 11 1592 2065 131711016 131710551 1.520000e-131 481.0
18 TraesCS4A01G200200 chr4B 85.532 470 45 9 3081 3531 131712794 131712329 3.290000e-128 470.0
19 TraesCS4A01G200200 chr4B 88.714 381 30 7 1589 1958 131712191 131711813 3.310000e-123 453.0
20 TraesCS4A01G200200 chr4B 85.185 459 40 14 2999 3430 131712270 131711813 5.540000e-121 446.0
21 TraesCS4A01G200200 chr4B 88.391 379 31 8 2157 2535 131712796 131712431 1.990000e-120 444.0
22 TraesCS4A01G200200 chr4B 88.158 152 18 0 2529 2680 611495451 611495602 1.730000e-41 182.0
23 TraesCS4A01G200200 chr4B 92.727 55 3 1 3022 3075 131710559 131710505 2.330000e-10 78.7
24 TraesCS4A01G200200 chr4B 89.583 48 2 3 249 296 131714083 131714039 3.030000e-04 58.4
25 TraesCS4A01G200200 chr4D 96.713 2221 60 9 4845 7055 93452708 93450491 0.000000e+00 3685.0
26 TraesCS4A01G200200 chr4D 94.430 1490 45 10 2748 4207 93454738 93453257 0.000000e+00 2257.0
27 TraesCS4A01G200200 chr4D 96.069 1094 32 4 974 2060 93457066 93455977 0.000000e+00 1772.0
28 TraesCS4A01G200200 chr4D 90.080 1119 57 18 1589 2667 93455840 93454736 0.000000e+00 1402.0
29 TraesCS4A01G200200 chr4D 92.037 653 27 9 238 889 93458012 93457384 0.000000e+00 894.0
30 TraesCS4A01G200200 chr4D 95.040 504 25 0 7284 7787 93439404 93438901 0.000000e+00 793.0
31 TraesCS4A01G200200 chr4D 93.895 475 28 1 2061 2535 93455935 93455462 0.000000e+00 715.0
32 TraesCS4A01G200200 chr4D 94.762 420 12 3 4214 4631 93453190 93452779 0.000000e+00 645.0
33 TraesCS4A01G200200 chr4D 86.621 583 53 16 1955 2535 93454595 93454036 8.580000e-174 621.0
34 TraesCS4A01G200200 chr4D 86.413 552 47 13 2999 3523 93455919 93455369 5.240000e-161 579.0
35 TraesCS4A01G200200 chr4D 86.957 483 47 11 1592 2065 93454404 93453929 5.350000e-146 529.0
36 TraesCS4A01G200200 chr4D 85.474 475 43 11 3081 3531 93456450 93455978 9.150000e-129 472.0
37 TraesCS4A01G200200 chr4D 88.052 385 29 6 2157 2535 93456452 93456079 2.580000e-119 440.0
38 TraesCS4A01G200200 chr4D 86.352 381 29 10 1589 1958 93455241 93454873 2.040000e-105 394.0
39 TraesCS4A01G200200 chr4D 83.261 460 37 21 2999 3430 93455320 93454873 3.410000e-103 387.0
40 TraesCS4A01G200200 chr4D 92.262 168 13 0 7122 7289 93441873 93441706 1.010000e-58 239.0
41 TraesCS4A01G200200 chr4D 91.216 148 11 2 2750 2895 11163464 11163611 4.770000e-47 200.0
42 TraesCS4A01G200200 chr4D 93.893 131 8 0 2534 2664 173288334 173288204 1.710000e-46 198.0
43 TraesCS4A01G200200 chr4D 93.846 130 8 0 2532 2661 121553683 121553812 6.160000e-46 196.0
44 TraesCS4A01G200200 chr4D 90.411 146 14 0 2750 2895 417064801 417064656 7.970000e-45 193.0
45 TraesCS4A01G200200 chr4D 98.734 79 0 1 7047 7125 93447582 93447505 1.050000e-28 139.0
46 TraesCS4A01G200200 chr4D 90.909 77 3 1 4732 4808 93452781 93452709 4.970000e-17 100.0
47 TraesCS4A01G200200 chr2B 91.468 293 19 3 1244 1530 610243552 610243844 1.570000e-106 398.0
48 TraesCS4A01G200200 chr2B 88.591 149 17 0 2532 2680 476931773 476931921 1.730000e-41 182.0
49 TraesCS4A01G200200 chr2B 87.069 116 11 1 1236 1347 76113647 76113532 2.280000e-25 128.0
50 TraesCS4A01G200200 chr2B 91.011 89 5 3 2666 2752 493985644 493985557 4.940000e-22 117.0
51 TraesCS4A01G200200 chr2B 90.805 87 5 2 2666 2750 493985559 493985644 6.390000e-21 113.0
52 TraesCS4A01G200200 chr2B 97.143 35 1 0 1142 1176 76113706 76113672 8.440000e-05 60.2
53 TraesCS4A01G200200 chr2B 87.755 49 5 1 1122 1169 659264014 659264062 1.000000e-03 56.5
54 TraesCS4A01G200200 chr3B 92.262 168 10 2 77 241 749036511 749036678 1.310000e-57 235.0
55 TraesCS4A01G200200 chr3B 90.244 123 7 2 1236 1353 786271850 786271972 1.050000e-33 156.0
56 TraesCS4A01G200200 chr3B 88.618 123 9 2 1236 1353 744524138 744524260 2.260000e-30 145.0
57 TraesCS4A01G200200 chr3B 87.755 49 5 1 1122 1169 707019887 707019839 1.000000e-03 56.5
58 TraesCS4A01G200200 chr3B 94.286 35 2 0 1122 1156 173330639 173330605 4.000000e-03 54.7
59 TraesCS4A01G200200 chr7D 91.566 166 12 2 77 241 7707459 7707623 2.190000e-55 228.0
60 TraesCS4A01G200200 chr7D 90.741 162 14 1 2526 2686 26528134 26528295 1.700000e-51 215.0
61 TraesCS4A01G200200 chr7D 93.382 136 8 1 2750 2885 254710663 254710797 4.770000e-47 200.0
62 TraesCS4A01G200200 chr7D 91.608 143 11 1 2749 2891 563897815 563897956 6.160000e-46 196.0
63 TraesCS4A01G200200 chr7D 100.000 28 0 0 2999 3026 110572405 110572432 1.400000e-02 52.8
64 TraesCS4A01G200200 chr6D 92.517 147 11 0 2745 2891 54562083 54562229 2.200000e-50 211.0
65 TraesCS4A01G200200 chr6D 91.613 155 9 3 2534 2686 448381410 448381562 2.200000e-50 211.0
66 TraesCS4A01G200200 chr6D 93.846 130 8 0 2532 2661 334161167 334161296 6.160000e-46 196.0
67 TraesCS4A01G200200 chr6D 93.233 133 9 0 2532 2664 358599576 358599444 6.160000e-46 196.0
68 TraesCS4A01G200200 chr6D 97.674 43 1 0 2061 2103 292073413 292073371 3.010000e-09 75.0
69 TraesCS4A01G200200 chr3D 94.737 133 7 0 2532 2664 599373951 599373819 2.850000e-49 207.0
70 TraesCS4A01G200200 chr3D 89.726 146 15 0 2530 2675 295552253 295552398 3.710000e-43 187.0
71 TraesCS4A01G200200 chr3A 91.034 145 13 0 2750 2894 555347031 555347175 6.160000e-46 196.0
72 TraesCS4A01G200200 chr3A 90.517 116 7 1 1236 1347 625657681 625657566 4.870000e-32 150.0
73 TraesCS4A01G200200 chr3A 88.793 116 9 1 1236 1347 731919073 731918958 1.050000e-28 139.0
74 TraesCS4A01G200200 chr3A 98.113 53 1 0 1 53 154703998 154703946 8.320000e-15 93.5
75 TraesCS4A01G200200 chr3A 96.364 55 2 0 1122 1176 731919152 731919098 2.990000e-14 91.6
76 TraesCS4A01G200200 chr3A 92.727 55 4 0 1122 1176 625657760 625657706 6.480000e-11 80.5
77 TraesCS4A01G200200 chr3A 100.000 28 0 0 2999 3026 74237202 74237229 1.400000e-02 52.8
78 TraesCS4A01G200200 chr2A 91.429 140 12 0 2755 2894 49495806 49495667 7.970000e-45 193.0
79 TraesCS4A01G200200 chr2A 92.593 108 4 1 1244 1347 687145171 687145064 1.350000e-32 152.0
80 TraesCS4A01G200200 chr2A 91.818 110 5 1 1242 1347 663485361 663485252 4.870000e-32 150.0
81 TraesCS4A01G200200 chr2A 90.196 102 9 1 2659 2760 38346742 38346642 1.760000e-26 132.0
82 TraesCS4A01G200200 chr2A 91.765 85 6 1 2666 2750 567733296 567733379 4.940000e-22 117.0
83 TraesCS4A01G200200 chr2A 96.364 55 2 0 1122 1176 663485446 663485392 2.990000e-14 91.6
84 TraesCS4A01G200200 chr7B 88.591 149 17 0 2532 2680 84006365 84006217 1.730000e-41 182.0
85 TraesCS4A01G200200 chr7B 88.591 149 17 0 2532 2680 112456998 112457146 1.730000e-41 182.0
86 TraesCS4A01G200200 chr7B 88.591 149 17 0 2532 2680 178720520 178720668 1.730000e-41 182.0
87 TraesCS4A01G200200 chr7B 87.805 123 10 2 1236 1353 13164111 13163989 1.050000e-28 139.0
88 TraesCS4A01G200200 chr7B 89.474 95 8 1 2656 2750 143337592 143337684 1.370000e-22 119.0
89 TraesCS4A01G200200 chr7B 90.588 85 8 0 2666 2750 638514093 638514009 6.390000e-21 113.0
90 TraesCS4A01G200200 chr7B 93.617 47 3 0 2061 2107 27299490 27299536 3.900000e-08 71.3
91 TraesCS4A01G200200 chr7B 87.755 49 5 1 1122 1169 71221173 71221125 1.000000e-03 56.5
92 TraesCS4A01G200200 chr7B 87.755 49 5 1 1122 1169 641982380 641982332 1.000000e-03 56.5
93 TraesCS4A01G200200 chr7B 100.000 28 0 0 2999 3026 69587492 69587519 1.400000e-02 52.8
94 TraesCS4A01G200200 chr1B 87.931 116 10 1 1236 1347 152509696 152509811 4.900000e-27 134.0
95 TraesCS4A01G200200 chr1B 94.186 86 5 0 2666 2751 452285545 452285460 1.760000e-26 132.0
96 TraesCS4A01G200200 chr1B 92.727 55 4 0 1122 1176 152509617 152509671 6.480000e-11 80.5
97 TraesCS4A01G200200 chr1B 87.755 49 5 1 1122 1169 501628433 501628385 1.000000e-03 56.5
98 TraesCS4A01G200200 chr1D 90.110 91 8 1 2666 2756 336365982 336365893 4.940000e-22 117.0
99 TraesCS4A01G200200 chr7A 90.588 85 8 0 2666 2750 667157824 667157740 6.390000e-21 113.0
100 TraesCS4A01G200200 chr7A 92.727 55 4 0 1122 1176 588527709 588527655 6.480000e-11 80.5
101 TraesCS4A01G200200 chr6A 96.296 54 1 1 1 53 609677476 609677529 3.870000e-13 87.9
102 TraesCS4A01G200200 chr1A 96.226 53 2 0 1 53 323975239 323975291 3.870000e-13 87.9
103 TraesCS4A01G200200 chrUn 100.000 41 0 0 2062 2102 126679356 126679316 8.380000e-10 76.8
104 TraesCS4A01G200200 chr5B 87.755 49 5 1 1122 1169 295933387 295933339 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G200200 chr4A 488527980 488535766 7786 False 14380.000000 14380 100.000000 1 7787 1 chr4A.!!$F2 7786
1 TraesCS4A01G200200 chr4A 488529568 488531562 1994 False 384.850000 525 88.324750 1589 3583 8 chr4A.!!$F4 1994
2 TraesCS4A01G200200 chr4B 131706110 131714083 7973 True 1110.238462 5398 90.240692 249 7787 13 chr4B.!!$R1 7538
3 TraesCS4A01G200200 chr4D 93447505 93458012 10507 True 939.437500 3685 90.672438 238 7125 16 chr4D.!!$R4 6887
4 TraesCS4A01G200200 chr4D 93438901 93441873 2972 True 516.000000 793 93.651000 7122 7787 2 chr4D.!!$R3 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 128 0.107263 TGCTGCACTCCACAGAAACA 60.107 50.000 0.00 0.0 37.32 2.83 F
912 926 0.186386 TTCGATCCTCTCTCTCCCCC 59.814 60.000 0.00 0.0 0.00 5.40 F
1267 1514 0.394762 CCTGCTGCTGAATTGGGCTA 60.395 55.000 8.20 0.0 0.00 3.93 F
3683 4953 2.573009 TGGGAAGAGAGCAATCACATCA 59.427 45.455 0.00 0.0 0.00 3.07 F
5170 6577 1.243342 GCATGTGGCACCAGTAAGCA 61.243 55.000 16.26 0.0 43.97 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1267 1514 1.978580 ACCTCCCGAGAAGAAACACAT 59.021 47.619 0.00 0.00 0.00 3.21 R
3647 4917 5.046591 TCTCTTCCCACTATTTCGAACATGT 60.047 40.000 0.00 0.00 0.00 3.21 R
3768 5112 2.159544 ACGTGTAGCGCTTAAGAGACTC 60.160 50.000 18.68 6.48 46.11 3.36 R
6246 7654 0.527113 TTGAATGATGCAACCGCTGG 59.473 50.000 0.00 0.00 39.64 4.85 R
7679 14450 0.733729 CTCTCATGAGCTTGCTTGGC 59.266 55.000 18.36 0.00 33.12 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.948608 AAACACACACGACACACAATAA 57.051 36.364 0.00 0.00 0.00 1.40
24 25 3.311322 ACACACACGACACACAATAAAGG 59.689 43.478 0.00 0.00 0.00 3.11
25 26 2.289547 ACACACGACACACAATAAAGGC 59.710 45.455 0.00 0.00 0.00 4.35
26 27 2.548057 CACACGACACACAATAAAGGCT 59.452 45.455 0.00 0.00 0.00 4.58
27 28 2.806244 ACACGACACACAATAAAGGCTC 59.194 45.455 0.00 0.00 0.00 4.70
31 32 3.063997 CGACACACAATAAAGGCTCATCC 59.936 47.826 0.00 0.00 0.00 3.51
32 33 3.009723 ACACACAATAAAGGCTCATCCG 58.990 45.455 0.00 0.00 40.77 4.18
33 34 2.355756 CACACAATAAAGGCTCATCCGG 59.644 50.000 0.00 0.00 40.77 5.14
34 35 1.949525 CACAATAAAGGCTCATCCGGG 59.050 52.381 0.00 0.00 40.77 5.73
35 36 1.133792 ACAATAAAGGCTCATCCGGGG 60.134 52.381 0.00 0.00 40.77 5.73
36 37 1.133792 CAATAAAGGCTCATCCGGGGT 60.134 52.381 0.00 0.00 40.77 4.95
37 38 1.222567 ATAAAGGCTCATCCGGGGTT 58.777 50.000 0.00 0.00 40.77 4.11
40 41 0.546598 AAGGCTCATCCGGGGTTAAG 59.453 55.000 0.00 0.00 40.77 1.85
41 42 1.148498 GGCTCATCCGGGGTTAAGG 59.852 63.158 0.00 0.00 0.00 2.69
42 43 1.526225 GCTCATCCGGGGTTAAGGC 60.526 63.158 0.00 0.00 0.00 4.35
43 44 1.148498 CTCATCCGGGGTTAAGGCC 59.852 63.158 0.00 0.00 0.00 5.19
49 50 2.588439 GGGGTTAAGGCCGGAGAC 59.412 66.667 5.05 0.00 0.00 3.36
50 51 2.588439 GGGTTAAGGCCGGAGACC 59.412 66.667 5.05 10.90 0.00 3.85
51 52 2.295602 GGGTTAAGGCCGGAGACCA 61.296 63.158 5.05 0.00 32.00 4.02
52 53 1.681076 GGTTAAGGCCGGAGACCAA 59.319 57.895 5.05 0.00 0.00 3.67
53 54 0.255033 GGTTAAGGCCGGAGACCAAT 59.745 55.000 5.05 0.00 0.00 3.16
54 55 1.379527 GTTAAGGCCGGAGACCAATG 58.620 55.000 5.05 0.00 0.00 2.82
55 56 0.254747 TTAAGGCCGGAGACCAATGG 59.745 55.000 5.05 0.00 0.00 3.16
56 57 1.632018 TAAGGCCGGAGACCAATGGG 61.632 60.000 5.05 0.00 41.29 4.00
57 58 4.506255 GGCCGGAGACCAATGGGG 62.506 72.222 5.05 0.00 44.81 4.96
64 65 3.407967 GACCAATGGGGCCGGAGA 61.408 66.667 5.05 0.00 42.05 3.71
65 66 3.699134 GACCAATGGGGCCGGAGAC 62.699 68.421 5.05 0.00 42.05 3.36
66 67 4.506255 CCAATGGGGCCGGAGACC 62.506 72.222 5.05 3.65 0.00 3.85
67 68 3.727258 CAATGGGGCCGGAGACCA 61.727 66.667 5.05 10.58 38.88 4.02
68 69 2.938798 AATGGGGCCGGAGACCAA 60.939 61.111 5.05 0.00 37.89 3.67
69 70 2.316586 AATGGGGCCGGAGACCAAT 61.317 57.895 5.05 0.00 37.89 3.16
70 71 2.572333 AATGGGGCCGGAGACCAATG 62.572 60.000 5.05 0.00 37.89 2.82
71 72 4.506255 GGGGCCGGAGACCAATGG 62.506 72.222 5.05 0.00 0.00 3.16
72 73 4.506255 GGGCCGGAGACCAATGGG 62.506 72.222 5.05 0.00 41.29 4.00
73 74 4.506255 GGCCGGAGACCAATGGGG 62.506 72.222 5.05 0.00 44.81 4.96
83 84 2.793831 CCAATGGGGTTAAGCGGAG 58.206 57.895 0.00 0.00 0.00 4.63
96 97 2.879907 CGGAGCAACAATGGCCTG 59.120 61.111 3.32 0.00 0.00 4.85
97 98 2.703798 CGGAGCAACAATGGCCTGG 61.704 63.158 3.32 0.00 0.00 4.45
98 99 2.575461 GAGCAACAATGGCCTGGC 59.425 61.111 11.05 11.05 0.00 4.85
117 118 3.730761 CACGGGCTTGCTGCACTC 61.731 66.667 0.00 0.00 44.45 3.51
120 121 3.368571 GGGCTTGCTGCACTCCAC 61.369 66.667 17.67 1.56 43.01 4.02
121 122 2.595463 GGCTTGCTGCACTCCACA 60.595 61.111 0.00 0.00 45.15 4.17
122 123 2.623915 GGCTTGCTGCACTCCACAG 61.624 63.158 0.00 0.00 45.15 3.66
123 124 1.598962 GCTTGCTGCACTCCACAGA 60.599 57.895 0.00 0.00 42.31 3.41
124 125 1.168407 GCTTGCTGCACTCCACAGAA 61.168 55.000 0.00 0.00 42.31 3.02
125 126 1.311859 CTTGCTGCACTCCACAGAAA 58.688 50.000 0.00 0.00 37.32 2.52
126 127 1.002033 CTTGCTGCACTCCACAGAAAC 60.002 52.381 0.00 0.00 37.32 2.78
127 128 0.107263 TGCTGCACTCCACAGAAACA 60.107 50.000 0.00 0.00 37.32 2.83
128 129 1.024271 GCTGCACTCCACAGAAACAA 58.976 50.000 0.00 0.00 37.32 2.83
129 130 1.268743 GCTGCACTCCACAGAAACAAC 60.269 52.381 0.00 0.00 37.32 3.32
130 131 1.003545 CTGCACTCCACAGAAACAACG 60.004 52.381 0.00 0.00 37.32 4.10
131 132 0.307760 GCACTCCACAGAAACAACGG 59.692 55.000 0.00 0.00 0.00 4.44
132 133 1.663695 CACTCCACAGAAACAACGGT 58.336 50.000 0.00 0.00 0.00 4.83
133 134 1.330521 CACTCCACAGAAACAACGGTG 59.669 52.381 0.00 0.00 36.16 4.94
134 135 1.208535 ACTCCACAGAAACAACGGTGA 59.791 47.619 7.88 0.00 37.98 4.02
135 136 2.158813 ACTCCACAGAAACAACGGTGAT 60.159 45.455 7.88 0.00 37.98 3.06
136 137 2.878406 CTCCACAGAAACAACGGTGATT 59.122 45.455 7.88 0.00 37.98 2.57
137 138 4.062293 CTCCACAGAAACAACGGTGATTA 58.938 43.478 7.88 0.00 37.98 1.75
138 139 4.062293 TCCACAGAAACAACGGTGATTAG 58.938 43.478 7.88 0.01 37.98 1.73
139 140 4.062293 CCACAGAAACAACGGTGATTAGA 58.938 43.478 7.88 0.00 37.98 2.10
140 141 4.695455 CCACAGAAACAACGGTGATTAGAT 59.305 41.667 7.88 0.00 37.98 1.98
141 142 5.390885 CCACAGAAACAACGGTGATTAGATG 60.391 44.000 7.88 4.33 37.98 2.90
142 143 5.408299 CACAGAAACAACGGTGATTAGATGA 59.592 40.000 7.88 0.00 37.98 2.92
143 144 6.092670 CACAGAAACAACGGTGATTAGATGAT 59.907 38.462 7.88 0.00 37.98 2.45
144 145 7.277760 CACAGAAACAACGGTGATTAGATGATA 59.722 37.037 7.88 0.00 37.98 2.15
145 146 7.277981 ACAGAAACAACGGTGATTAGATGATAC 59.722 37.037 7.88 0.00 0.00 2.24
146 147 7.492669 CAGAAACAACGGTGATTAGATGATACT 59.507 37.037 7.88 0.00 0.00 2.12
147 148 8.041323 AGAAACAACGGTGATTAGATGATACTT 58.959 33.333 7.88 0.00 0.00 2.24
148 149 7.539712 AACAACGGTGATTAGATGATACTTG 57.460 36.000 7.88 0.00 0.00 3.16
149 150 5.523916 ACAACGGTGATTAGATGATACTTGC 59.476 40.000 7.88 0.00 0.00 4.01
150 151 5.537300 ACGGTGATTAGATGATACTTGCT 57.463 39.130 0.00 0.00 0.00 3.91
151 152 5.292765 ACGGTGATTAGATGATACTTGCTG 58.707 41.667 0.00 0.00 0.00 4.41
152 153 5.069119 ACGGTGATTAGATGATACTTGCTGA 59.931 40.000 0.00 0.00 0.00 4.26
153 154 6.162079 CGGTGATTAGATGATACTTGCTGAT 58.838 40.000 0.00 0.00 0.00 2.90
154 155 6.090493 CGGTGATTAGATGATACTTGCTGATG 59.910 42.308 0.00 0.00 0.00 3.07
155 156 6.933521 GGTGATTAGATGATACTTGCTGATGT 59.066 38.462 0.00 0.00 0.00 3.06
156 157 7.117523 GGTGATTAGATGATACTTGCTGATGTC 59.882 40.741 0.00 0.00 0.00 3.06
157 158 7.117523 GTGATTAGATGATACTTGCTGATGTCC 59.882 40.741 0.00 0.00 0.00 4.02
158 159 3.987547 AGATGATACTTGCTGATGTCCG 58.012 45.455 0.00 0.00 0.00 4.79
159 160 2.602257 TGATACTTGCTGATGTCCGG 57.398 50.000 0.00 0.00 0.00 5.14
160 161 2.107366 TGATACTTGCTGATGTCCGGA 58.893 47.619 0.00 0.00 0.00 5.14
161 162 2.159099 TGATACTTGCTGATGTCCGGAC 60.159 50.000 28.17 28.17 0.00 4.79
162 163 1.557099 TACTTGCTGATGTCCGGACT 58.443 50.000 33.39 19.82 0.00 3.85
163 164 1.557099 ACTTGCTGATGTCCGGACTA 58.443 50.000 33.39 20.73 0.00 2.59
164 165 1.478510 ACTTGCTGATGTCCGGACTAG 59.521 52.381 33.39 26.73 0.00 2.57
165 166 1.478510 CTTGCTGATGTCCGGACTAGT 59.521 52.381 33.39 20.04 0.00 2.57
166 167 1.103803 TGCTGATGTCCGGACTAGTC 58.896 55.000 33.39 26.18 0.00 2.59
167 168 1.341089 TGCTGATGTCCGGACTAGTCT 60.341 52.381 33.39 14.02 0.00 3.24
168 169 2.092592 TGCTGATGTCCGGACTAGTCTA 60.093 50.000 33.39 14.29 0.00 2.59
169 170 2.291190 GCTGATGTCCGGACTAGTCTAC 59.709 54.545 33.39 19.16 0.00 2.59
170 171 2.544686 CTGATGTCCGGACTAGTCTACG 59.455 54.545 33.39 16.97 0.00 3.51
171 172 2.169144 TGATGTCCGGACTAGTCTACGA 59.831 50.000 33.39 11.97 0.00 3.43
172 173 2.996249 TGTCCGGACTAGTCTACGAT 57.004 50.000 33.39 0.00 0.00 3.73
173 174 2.831333 TGTCCGGACTAGTCTACGATC 58.169 52.381 33.39 13.39 0.00 3.69
174 175 2.433604 TGTCCGGACTAGTCTACGATCT 59.566 50.000 33.39 0.00 0.00 2.75
175 176 3.118482 TGTCCGGACTAGTCTACGATCTT 60.118 47.826 33.39 0.00 0.00 2.40
176 177 3.876320 GTCCGGACTAGTCTACGATCTTT 59.124 47.826 27.64 0.00 0.00 2.52
177 178 3.875727 TCCGGACTAGTCTACGATCTTTG 59.124 47.826 21.88 5.16 0.00 2.77
178 179 3.875727 CCGGACTAGTCTACGATCTTTGA 59.124 47.826 21.88 0.00 0.00 2.69
179 180 4.515944 CCGGACTAGTCTACGATCTTTGAT 59.484 45.833 21.88 0.00 0.00 2.57
180 181 5.444983 CGGACTAGTCTACGATCTTTGATG 58.555 45.833 21.88 0.00 0.00 3.07
181 182 5.216648 GGACTAGTCTACGATCTTTGATGC 58.783 45.833 21.88 0.00 0.00 3.91
182 183 5.009210 GGACTAGTCTACGATCTTTGATGCT 59.991 44.000 21.88 0.00 0.00 3.79
183 184 5.826586 ACTAGTCTACGATCTTTGATGCTG 58.173 41.667 0.00 0.00 0.00 4.41
184 185 4.052159 AGTCTACGATCTTTGATGCTGG 57.948 45.455 0.00 0.00 0.00 4.85
185 186 2.541762 GTCTACGATCTTTGATGCTGGC 59.458 50.000 0.00 0.00 0.00 4.85
186 187 2.432146 TCTACGATCTTTGATGCTGGCT 59.568 45.455 0.00 0.00 0.00 4.75
187 188 1.376543 ACGATCTTTGATGCTGGCTG 58.623 50.000 0.00 0.00 0.00 4.85
188 189 1.065926 ACGATCTTTGATGCTGGCTGA 60.066 47.619 0.00 0.00 0.00 4.26
189 190 2.011947 CGATCTTTGATGCTGGCTGAA 58.988 47.619 0.00 0.00 0.00 3.02
190 191 2.617308 CGATCTTTGATGCTGGCTGAAT 59.383 45.455 0.00 0.00 0.00 2.57
191 192 3.548214 CGATCTTTGATGCTGGCTGAATG 60.548 47.826 0.00 0.00 0.00 2.67
192 193 2.799017 TCTTTGATGCTGGCTGAATGT 58.201 42.857 0.00 0.00 0.00 2.71
193 194 3.954200 TCTTTGATGCTGGCTGAATGTA 58.046 40.909 0.00 0.00 0.00 2.29
194 195 3.691118 TCTTTGATGCTGGCTGAATGTAC 59.309 43.478 0.00 0.00 0.00 2.90
195 196 3.354948 TTGATGCTGGCTGAATGTACT 57.645 42.857 0.00 0.00 0.00 2.73
196 197 4.486125 TTGATGCTGGCTGAATGTACTA 57.514 40.909 0.00 0.00 0.00 1.82
197 198 4.063998 TGATGCTGGCTGAATGTACTAG 57.936 45.455 0.00 0.00 0.00 2.57
198 199 3.452264 TGATGCTGGCTGAATGTACTAGT 59.548 43.478 0.00 0.00 0.00 2.57
199 200 3.526931 TGCTGGCTGAATGTACTAGTC 57.473 47.619 0.00 0.00 0.00 2.59
200 201 3.099905 TGCTGGCTGAATGTACTAGTCT 58.900 45.455 0.00 0.00 0.00 3.24
201 202 3.515502 TGCTGGCTGAATGTACTAGTCTT 59.484 43.478 0.00 0.00 0.00 3.01
202 203 4.020218 TGCTGGCTGAATGTACTAGTCTTT 60.020 41.667 0.00 0.00 0.00 2.52
203 204 4.568760 GCTGGCTGAATGTACTAGTCTTTC 59.431 45.833 0.00 6.37 0.00 2.62
204 205 5.625656 GCTGGCTGAATGTACTAGTCTTTCT 60.626 44.000 0.00 0.00 0.00 2.52
205 206 5.724328 TGGCTGAATGTACTAGTCTTTCTG 58.276 41.667 0.00 10.04 0.00 3.02
206 207 5.480422 TGGCTGAATGTACTAGTCTTTCTGA 59.520 40.000 19.34 7.64 0.00 3.27
207 208 6.039616 GGCTGAATGTACTAGTCTTTCTGAG 58.960 44.000 19.34 12.44 0.00 3.35
208 209 6.350612 GGCTGAATGTACTAGTCTTTCTGAGT 60.351 42.308 19.34 0.00 0.00 3.41
209 210 7.148052 GGCTGAATGTACTAGTCTTTCTGAGTA 60.148 40.741 19.34 0.00 0.00 2.59
219 220 8.850454 CTAGTCTTTCTGAGTAGTCTTATTGC 57.150 38.462 0.00 0.00 41.51 3.56
220 221 7.475137 AGTCTTTCTGAGTAGTCTTATTGCT 57.525 36.000 0.00 0.00 0.00 3.91
221 222 8.582657 AGTCTTTCTGAGTAGTCTTATTGCTA 57.417 34.615 0.00 0.00 0.00 3.49
222 223 8.463607 AGTCTTTCTGAGTAGTCTTATTGCTAC 58.536 37.037 0.00 0.00 38.20 3.58
230 231 7.519032 AGTAGTCTTATTGCTACTCCAGATC 57.481 40.000 0.00 0.00 42.84 2.75
231 232 7.294584 AGTAGTCTTATTGCTACTCCAGATCT 58.705 38.462 0.00 0.00 42.84 2.75
232 233 8.441572 AGTAGTCTTATTGCTACTCCAGATCTA 58.558 37.037 0.00 0.00 42.84 1.98
233 234 9.069082 GTAGTCTTATTGCTACTCCAGATCTAA 57.931 37.037 0.00 0.00 35.83 2.10
234 235 8.540507 AGTCTTATTGCTACTCCAGATCTAAA 57.459 34.615 0.00 0.00 0.00 1.85
235 236 8.982723 AGTCTTATTGCTACTCCAGATCTAAAA 58.017 33.333 0.00 0.00 0.00 1.52
236 237 9.601217 GTCTTATTGCTACTCCAGATCTAAAAA 57.399 33.333 0.00 0.00 0.00 1.94
259 260 4.605640 AAATTGGGGCGAATTCATATGG 57.394 40.909 6.22 0.00 0.00 2.74
260 261 3.524095 ATTGGGGCGAATTCATATGGA 57.476 42.857 6.22 0.00 0.00 3.41
261 262 2.566833 TGGGGCGAATTCATATGGAG 57.433 50.000 6.22 0.00 0.00 3.86
262 263 1.774254 TGGGGCGAATTCATATGGAGT 59.226 47.619 6.22 0.00 0.00 3.85
263 264 2.174639 TGGGGCGAATTCATATGGAGTT 59.825 45.455 6.22 0.00 0.00 3.01
264 265 2.554032 GGGGCGAATTCATATGGAGTTG 59.446 50.000 6.22 0.00 0.00 3.16
265 266 2.554032 GGGCGAATTCATATGGAGTTGG 59.446 50.000 6.22 0.00 0.00 3.77
266 267 3.476552 GGCGAATTCATATGGAGTTGGA 58.523 45.455 6.22 0.00 0.00 3.53
267 268 4.074970 GGCGAATTCATATGGAGTTGGAT 58.925 43.478 6.22 0.00 0.00 3.41
268 269 4.154918 GGCGAATTCATATGGAGTTGGATC 59.845 45.833 6.22 0.00 0.00 3.36
269 270 4.756642 GCGAATTCATATGGAGTTGGATCA 59.243 41.667 6.22 0.00 0.00 2.92
270 271 5.334414 GCGAATTCATATGGAGTTGGATCAC 60.334 44.000 6.22 0.00 0.00 3.06
271 272 5.759763 CGAATTCATATGGAGTTGGATCACA 59.240 40.000 6.22 0.00 0.00 3.58
272 273 6.429078 CGAATTCATATGGAGTTGGATCACAT 59.571 38.462 6.22 0.00 0.00 3.21
273 274 7.360691 CGAATTCATATGGAGTTGGATCACATC 60.361 40.741 6.22 0.00 0.00 3.06
274 275 5.892524 TCATATGGAGTTGGATCACATCA 57.107 39.130 2.13 0.00 0.00 3.07
275 276 5.614308 TCATATGGAGTTGGATCACATCAC 58.386 41.667 2.13 0.00 0.00 3.06
276 277 2.385013 TGGAGTTGGATCACATCACG 57.615 50.000 0.00 0.00 0.00 4.35
277 278 1.899142 TGGAGTTGGATCACATCACGA 59.101 47.619 0.00 0.00 0.00 4.35
278 279 2.301583 TGGAGTTGGATCACATCACGAA 59.698 45.455 0.00 0.00 0.00 3.85
279 280 3.244387 TGGAGTTGGATCACATCACGAAA 60.244 43.478 0.00 0.00 0.00 3.46
280 281 3.751175 GGAGTTGGATCACATCACGAAAA 59.249 43.478 0.00 0.00 0.00 2.29
281 282 4.215399 GGAGTTGGATCACATCACGAAAAA 59.785 41.667 0.00 0.00 0.00 1.94
282 283 5.106157 GGAGTTGGATCACATCACGAAAAAT 60.106 40.000 0.00 0.00 0.00 1.82
283 284 6.093495 GGAGTTGGATCACATCACGAAAAATA 59.907 38.462 0.00 0.00 0.00 1.40
284 285 7.076842 AGTTGGATCACATCACGAAAAATAG 57.923 36.000 0.00 0.00 0.00 1.73
285 286 6.094048 AGTTGGATCACATCACGAAAAATAGG 59.906 38.462 0.00 0.00 0.00 2.57
286 287 4.881273 TGGATCACATCACGAAAAATAGGG 59.119 41.667 0.00 0.00 0.00 3.53
287 288 4.881850 GGATCACATCACGAAAAATAGGGT 59.118 41.667 0.00 0.00 0.00 4.34
288 289 5.220854 GGATCACATCACGAAAAATAGGGTG 60.221 44.000 0.00 0.00 0.00 4.61
289 290 4.900684 TCACATCACGAAAAATAGGGTGA 58.099 39.130 0.00 0.00 42.88 4.02
290 291 5.309638 TCACATCACGAAAAATAGGGTGAA 58.690 37.500 0.00 0.00 42.10 3.18
291 292 5.943416 TCACATCACGAAAAATAGGGTGAAT 59.057 36.000 0.00 0.00 42.10 2.57
292 293 6.432783 TCACATCACGAAAAATAGGGTGAATT 59.567 34.615 0.00 0.00 42.10 2.17
293 294 6.747280 CACATCACGAAAAATAGGGTGAATTC 59.253 38.462 0.00 0.00 42.10 2.17
294 295 6.432783 ACATCACGAAAAATAGGGTGAATTCA 59.567 34.615 3.38 3.38 42.10 2.57
295 296 7.122650 ACATCACGAAAAATAGGGTGAATTCAT 59.877 33.333 12.12 0.00 42.10 2.57
296 297 8.620416 CATCACGAAAAATAGGGTGAATTCATA 58.380 33.333 12.12 0.22 42.10 2.15
297 298 8.746052 TCACGAAAAATAGGGTGAATTCATAT 57.254 30.769 12.12 2.83 36.55 1.78
298 299 8.620416 TCACGAAAAATAGGGTGAATTCATATG 58.380 33.333 12.12 0.00 36.55 1.78
299 300 7.862372 CACGAAAAATAGGGTGAATTCATATGG 59.138 37.037 12.12 0.00 32.23 2.74
319 320 2.636830 GGGAGTTGGATCACATCACAG 58.363 52.381 0.00 0.00 0.00 3.66
361 362 9.383519 GTCTCTGGACATGAAAACTGAAATATA 57.616 33.333 0.00 0.00 41.75 0.86
388 389 8.138074 GGAAACCAGAATTAAAGAGGATAATGC 58.862 37.037 0.00 0.00 0.00 3.56
396 397 3.838244 AAGAGGATAATGCGGTTGCTA 57.162 42.857 0.00 0.00 43.34 3.49
479 480 2.526304 TCTTGGAAGACTTGTCCGTG 57.474 50.000 0.00 0.00 38.06 4.94
492 493 1.301401 TCCGTGAAGAAACCAGGCG 60.301 57.895 0.00 0.00 0.00 5.52
506 507 2.183300 GGCGCCGTCTGTCATGTA 59.817 61.111 12.58 0.00 0.00 2.29
507 508 1.227263 GGCGCCGTCTGTCATGTAT 60.227 57.895 12.58 0.00 0.00 2.29
508 509 1.490693 GGCGCCGTCTGTCATGTATG 61.491 60.000 12.58 0.00 0.00 2.39
509 510 1.490693 GCGCCGTCTGTCATGTATGG 61.491 60.000 0.00 0.00 0.00 2.74
659 661 3.878778 CCAGCAGCCACTAAAATACTCT 58.121 45.455 0.00 0.00 0.00 3.24
802 816 0.821711 CAGAAAAGCACCCCAACCGA 60.822 55.000 0.00 0.00 0.00 4.69
809 823 0.249280 GCACCCCAACCGAAAAACAG 60.249 55.000 0.00 0.00 0.00 3.16
851 865 3.181428 GGAGGGGAGGGAAAAATATCTGG 60.181 52.174 0.00 0.00 0.00 3.86
907 921 1.398692 GTGCCTTCGATCCTCTCTCT 58.601 55.000 0.00 0.00 0.00 3.10
912 926 0.186386 TTCGATCCTCTCTCTCCCCC 59.814 60.000 0.00 0.00 0.00 5.40
957 971 3.255149 CAGGGCTGCAGATATTTTCATCC 59.745 47.826 20.43 4.37 0.00 3.51
969 983 1.952621 TTTCATCCGTTCCCCTCTCT 58.047 50.000 0.00 0.00 0.00 3.10
972 986 0.687757 CATCCGTTCCCCTCTCTCCA 60.688 60.000 0.00 0.00 0.00 3.86
1267 1514 0.394762 CCTGCTGCTGAATTGGGCTA 60.395 55.000 8.20 0.00 0.00 3.93
1499 1746 5.046529 ACTAACGCTTCATATCAGCTTGAG 58.953 41.667 2.63 0.00 34.88 3.02
3683 4953 2.573009 TGGGAAGAGAGCAATCACATCA 59.427 45.455 0.00 0.00 0.00 3.07
3967 5311 8.449251 AGATGCCTTCAATTAGAATTCTCTTC 57.551 34.615 12.24 2.49 35.25 2.87
4081 5425 3.614399 CTTCCTCGTGAAGCCAGTT 57.386 52.632 4.89 0.00 43.79 3.16
4185 5529 2.582728 TTTCTTTTGCAGCCTGTGTG 57.417 45.000 0.00 0.00 0.00 3.82
4186 5530 1.473258 TTCTTTTGCAGCCTGTGTGT 58.527 45.000 0.00 0.00 0.00 3.72
4216 5620 2.204463 TGAATGATGGGGTAGCCTTCA 58.796 47.619 11.48 14.26 28.88 3.02
4234 5638 7.989826 AGCCTTCATCAATTGTACTATTTGTC 58.010 34.615 5.13 0.00 0.00 3.18
4244 5648 8.338259 CAATTGTACTATTTGTCCTACATCTGC 58.662 37.037 0.00 0.00 0.00 4.26
4257 5662 5.069648 TCCTACATCTGCTAGTCATTTCTGG 59.930 44.000 0.00 0.00 0.00 3.86
4418 5825 6.875076 TCCTAGCTTTCTGAGGTGTAATTAC 58.125 40.000 8.75 8.75 37.30 1.89
4419 5826 6.668283 TCCTAGCTTTCTGAGGTGTAATTACT 59.332 38.462 16.33 0.00 37.30 2.24
4420 5827 7.837689 TCCTAGCTTTCTGAGGTGTAATTACTA 59.162 37.037 16.33 0.91 37.30 1.82
4421 5828 8.475639 CCTAGCTTTCTGAGGTGTAATTACTAA 58.524 37.037 16.33 0.00 37.30 2.24
4452 5859 5.063180 TGCACATTCCATTTCAGATGAAC 57.937 39.130 0.00 0.00 33.13 3.18
4514 5921 8.612619 CAACCATATAAGTGTGAATTCTGGTAC 58.387 37.037 7.05 0.00 33.53 3.34
4542 5949 3.409026 AAGACAGGAGAAAACAGCGAT 57.591 42.857 0.00 0.00 0.00 4.58
4546 5953 2.300152 ACAGGAGAAAACAGCGATGAGA 59.700 45.455 8.12 0.00 0.00 3.27
4624 6031 8.768501 TGATATCAAAGTATGAGTAGAGTGGT 57.231 34.615 1.98 0.00 42.53 4.16
4628 6035 8.768501 ATCAAAGTATGAGTAGAGTGGTATCA 57.231 34.615 0.00 0.00 42.53 2.15
4650 6057 6.878317 TCACTCCTAACTCAGGTTGATAATG 58.122 40.000 0.00 0.00 45.71 1.90
4652 6059 5.426833 ACTCCTAACTCAGGTTGATAATGCT 59.573 40.000 0.00 0.00 45.71 3.79
4671 6078 7.412137 AATGCTAAGCAAGTGAAATTGAAAC 57.588 32.000 0.00 0.00 43.62 2.78
4685 6092 6.652481 TGAAATTGAAACCTGAAGCAAACAAA 59.348 30.769 0.00 0.00 0.00 2.83
4741 6148 4.775780 TCACTACCAGTTAACTGTAGCCAT 59.224 41.667 29.05 14.29 42.27 4.40
4813 6220 8.455682 TCTGGTTACTCTTTTTAATTATTGGCG 58.544 33.333 0.00 0.00 0.00 5.69
4842 6249 4.523083 TGCACCTAAAATCCTATGGACAC 58.477 43.478 0.00 0.00 32.98 3.67
4843 6250 4.227300 TGCACCTAAAATCCTATGGACACT 59.773 41.667 0.00 0.00 32.98 3.55
4889 6296 2.155279 GGAAGCAAAAGGGAGACTGAC 58.845 52.381 0.00 0.00 0.00 3.51
4923 6330 4.513442 TGAGAAATTACCGGAGATTGTGG 58.487 43.478 9.46 0.00 0.00 4.17
4945 6352 3.550233 GCACATAATGGAGCAAGCTCATG 60.550 47.826 22.19 18.02 44.40 3.07
5170 6577 1.243342 GCATGTGGCACCAGTAAGCA 61.243 55.000 16.26 0.00 43.97 3.91
5200 6607 5.210715 GTTTTCAGCTGAGAAGAATGTGTG 58.789 41.667 19.24 0.00 0.00 3.82
5489 6896 5.335191 GGATGTCAACTTAGGAAAGCAACAG 60.335 44.000 0.00 0.00 36.05 3.16
5990 7398 2.753452 CAAGAGAAGATGCTGGCACAAT 59.247 45.455 0.00 0.00 38.70 2.71
6030 7438 2.092914 GGACAATTTCGGTCATCCTCCT 60.093 50.000 0.00 0.00 37.00 3.69
6060 7468 7.251281 GCTTTATACCTGTTCCAATTTCTGTC 58.749 38.462 0.00 0.00 0.00 3.51
6062 7470 1.880027 ACCTGTTCCAATTTCTGTCGC 59.120 47.619 0.00 0.00 0.00 5.19
6099 7507 6.145556 GTACCAGTACAGTGCAATTATGCCT 61.146 44.000 3.07 0.00 42.44 4.75
6135 7543 2.167075 ACAGCCTCCTTTTATGCAATGC 59.833 45.455 0.00 0.00 0.00 3.56
6246 7654 5.523916 TGAACACAGACAGCTAGAAGAAAAC 59.476 40.000 0.00 0.00 0.00 2.43
6266 7674 1.067706 CCAGCGGTTGCATCATTCAAA 60.068 47.619 0.00 0.00 46.23 2.69
6553 7961 6.097915 TCGAGAAGAAGGTGTTCTATTTGT 57.902 37.500 0.00 0.00 42.59 2.83
6588 7996 5.849357 TTCTGCAAATTCACAAATCATGC 57.151 34.783 0.00 0.00 37.77 4.06
6611 8019 7.424803 TGCATGCGCACTTATATATTCTTTTT 58.575 30.769 14.90 0.00 45.36 1.94
6702 8110 0.179009 ACAGCAGGAAGAAGCTTGCA 60.179 50.000 2.10 0.00 42.63 4.08
6723 8131 4.615452 GCAGAGCAAAGACCAAGAATCAAG 60.615 45.833 0.00 0.00 0.00 3.02
6735 8143 2.962859 AGAATCAAGGGGCAGTTTGTT 58.037 42.857 0.00 0.00 0.00 2.83
6774 8182 1.804151 GCTACAACAACGGAAGATGCA 59.196 47.619 0.00 0.00 37.40 3.96
6783 8191 3.340814 ACGGAAGATGCAGAAACAGAT 57.659 42.857 0.00 0.00 0.00 2.90
6790 8198 6.183360 GGAAGATGCAGAAACAGATTAGTGAC 60.183 42.308 0.00 0.00 0.00 3.67
6810 8218 4.688879 TGACGTTGTTAATCCATGACTGTC 59.311 41.667 0.00 0.00 0.00 3.51
6833 8241 3.973206 TTTGATACTTCGCTTCCCAGA 57.027 42.857 0.00 0.00 0.00 3.86
6834 8242 3.526931 TTGATACTTCGCTTCCCAGAG 57.473 47.619 0.00 0.00 0.00 3.35
6836 8244 1.069358 GATACTTCGCTTCCCAGAGGG 59.931 57.143 0.00 0.00 46.11 4.30
6885 8302 3.304829 AGGCTGGCAAAAGTTTTCCTTA 58.695 40.909 3.38 0.48 31.48 2.69
6960 8379 3.826524 TGACATGGTTTGCCTGTAAAGA 58.173 40.909 0.00 0.00 35.27 2.52
6961 8380 3.820467 TGACATGGTTTGCCTGTAAAGAG 59.180 43.478 0.00 0.00 35.27 2.85
7163 11626 8.206867 CCTCTATGTAAGATGATTGAAGGACAA 58.793 37.037 0.00 0.00 36.91 3.18
7237 11700 1.266989 CTTTTCCCAGTTCTTGCGGTC 59.733 52.381 0.00 0.00 0.00 4.79
7263 11726 0.954452 CAGTTTCCTGTGGAACTGCC 59.046 55.000 1.06 0.00 41.87 4.85
7321 14091 1.429463 CCGACTTCTTTCTCCAACCG 58.571 55.000 0.00 0.00 0.00 4.44
7392 14162 5.157940 ACACATGCACTTCTCAATCTACT 57.842 39.130 0.00 0.00 0.00 2.57
7394 14164 6.882656 ACACATGCACTTCTCAATCTACTAT 58.117 36.000 0.00 0.00 0.00 2.12
7400 14170 5.069781 GCACTTCTCAATCTACTATCCCTGT 59.930 44.000 0.00 0.00 0.00 4.00
7496 14267 1.019278 TGGCCGATTTCTTGAGACGC 61.019 55.000 0.00 0.00 0.00 5.19
7503 14274 4.512657 CGATTTCTTGAGACGCATCAATC 58.487 43.478 3.62 0.00 38.47 2.67
7519 14290 1.545582 CAATCGTTTGGTGCCAATCCT 59.454 47.619 4.32 0.00 35.70 3.24
7586 14357 1.677576 CAGCTTGCACCTGAAGTTTCA 59.322 47.619 7.61 0.00 35.57 2.69
7679 14450 1.987807 ATCTCATTCCCCCACCTGCG 61.988 60.000 0.00 0.00 0.00 5.18
7709 14480 0.978907 TCATGAGAGCAGCCTGTCAA 59.021 50.000 0.00 0.00 43.58 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.848191 GCCTTTATTGTGTGTCGTGTGTG 60.848 47.826 0.00 0.00 0.00 3.82
4 5 2.289547 GCCTTTATTGTGTGTCGTGTGT 59.710 45.455 0.00 0.00 0.00 3.72
5 6 2.548057 AGCCTTTATTGTGTGTCGTGTG 59.452 45.455 0.00 0.00 0.00 3.82
6 7 2.806244 GAGCCTTTATTGTGTGTCGTGT 59.194 45.455 0.00 0.00 0.00 4.49
7 8 2.805671 TGAGCCTTTATTGTGTGTCGTG 59.194 45.455 0.00 0.00 0.00 4.35
8 9 3.120321 TGAGCCTTTATTGTGTGTCGT 57.880 42.857 0.00 0.00 0.00 4.34
11 12 3.009723 CGGATGAGCCTTTATTGTGTGT 58.990 45.455 0.00 0.00 0.00 3.72
12 13 2.355756 CCGGATGAGCCTTTATTGTGTG 59.644 50.000 0.00 0.00 0.00 3.82
13 14 2.643551 CCGGATGAGCCTTTATTGTGT 58.356 47.619 0.00 0.00 0.00 3.72
14 15 1.949525 CCCGGATGAGCCTTTATTGTG 59.050 52.381 0.73 0.00 0.00 3.33
15 16 1.133792 CCCCGGATGAGCCTTTATTGT 60.134 52.381 0.73 0.00 0.00 2.71
16 17 1.133792 ACCCCGGATGAGCCTTTATTG 60.134 52.381 0.73 0.00 0.00 1.90
17 18 1.222567 ACCCCGGATGAGCCTTTATT 58.777 50.000 0.73 0.00 0.00 1.40
20 21 0.996583 TTAACCCCGGATGAGCCTTT 59.003 50.000 0.73 0.00 0.00 3.11
21 22 0.546598 CTTAACCCCGGATGAGCCTT 59.453 55.000 0.73 0.00 0.00 4.35
24 25 1.526225 GCCTTAACCCCGGATGAGC 60.526 63.158 0.73 0.00 0.00 4.26
25 26 1.148498 GGCCTTAACCCCGGATGAG 59.852 63.158 0.73 0.00 0.00 2.90
26 27 2.737881 CGGCCTTAACCCCGGATGA 61.738 63.158 0.73 0.00 40.79 2.92
27 28 2.203153 CGGCCTTAACCCCGGATG 60.203 66.667 0.73 0.00 40.79 3.51
31 32 3.078836 TCTCCGGCCTTAACCCCG 61.079 66.667 0.00 2.76 43.97 5.73
32 33 2.588439 GTCTCCGGCCTTAACCCC 59.412 66.667 0.00 0.00 0.00 4.95
33 34 1.844544 TTGGTCTCCGGCCTTAACCC 61.845 60.000 0.00 0.00 0.00 4.11
34 35 0.255033 ATTGGTCTCCGGCCTTAACC 59.745 55.000 0.00 3.73 0.00 2.85
35 36 1.379527 CATTGGTCTCCGGCCTTAAC 58.620 55.000 0.00 0.00 0.00 2.01
36 37 0.254747 CCATTGGTCTCCGGCCTTAA 59.745 55.000 0.00 0.00 0.00 1.85
37 38 1.632018 CCCATTGGTCTCCGGCCTTA 61.632 60.000 0.00 0.00 0.00 2.69
40 41 4.506255 CCCCATTGGTCTCCGGCC 62.506 72.222 0.00 0.00 0.00 6.13
42 43 4.506255 GGCCCCATTGGTCTCCGG 62.506 72.222 0.00 0.00 35.10 5.14
43 44 4.856801 CGGCCCCATTGGTCTCCG 62.857 72.222 11.41 11.41 36.18 4.63
46 47 3.411517 CTCCGGCCCCATTGGTCT 61.412 66.667 0.00 0.00 36.18 3.85
47 48 3.407967 TCTCCGGCCCCATTGGTC 61.408 66.667 0.00 0.00 36.04 4.02
49 50 4.506255 GGTCTCCGGCCCCATTGG 62.506 72.222 0.00 0.00 37.09 3.16
50 51 2.572333 ATTGGTCTCCGGCCCCATTG 62.572 60.000 0.00 0.00 0.00 2.82
51 52 2.316586 ATTGGTCTCCGGCCCCATT 61.317 57.895 0.00 0.00 0.00 3.16
52 53 2.696125 ATTGGTCTCCGGCCCCAT 60.696 61.111 0.00 0.00 0.00 4.00
53 54 3.727258 CATTGGTCTCCGGCCCCA 61.727 66.667 0.00 0.00 0.00 4.96
54 55 4.506255 CCATTGGTCTCCGGCCCC 62.506 72.222 0.00 0.00 0.00 5.80
55 56 4.506255 CCCATTGGTCTCCGGCCC 62.506 72.222 0.00 0.00 0.00 5.80
56 57 4.506255 CCCCATTGGTCTCCGGCC 62.506 72.222 0.00 0.00 0.00 6.13
65 66 1.384222 GCTCCGCTTAACCCCATTGG 61.384 60.000 0.00 0.00 41.37 3.16
66 67 0.679640 TGCTCCGCTTAACCCCATTG 60.680 55.000 0.00 0.00 0.00 2.82
67 68 0.039035 TTGCTCCGCTTAACCCCATT 59.961 50.000 0.00 0.00 0.00 3.16
68 69 0.679960 GTTGCTCCGCTTAACCCCAT 60.680 55.000 0.00 0.00 0.00 4.00
69 70 1.302993 GTTGCTCCGCTTAACCCCA 60.303 57.895 0.00 0.00 0.00 4.96
70 71 0.891904 TTGTTGCTCCGCTTAACCCC 60.892 55.000 0.00 0.00 0.00 4.95
71 72 1.135402 CATTGTTGCTCCGCTTAACCC 60.135 52.381 0.00 0.00 0.00 4.11
72 73 1.135402 CCATTGTTGCTCCGCTTAACC 60.135 52.381 0.00 0.00 0.00 2.85
73 74 1.732405 GCCATTGTTGCTCCGCTTAAC 60.732 52.381 0.00 0.00 0.00 2.01
74 75 0.525761 GCCATTGTTGCTCCGCTTAA 59.474 50.000 0.00 0.00 0.00 1.85
75 76 1.312371 GGCCATTGTTGCTCCGCTTA 61.312 55.000 0.00 0.00 0.00 3.09
76 77 2.639327 GGCCATTGTTGCTCCGCTT 61.639 57.895 0.00 0.00 0.00 4.68
77 78 3.064324 GGCCATTGTTGCTCCGCT 61.064 61.111 0.00 0.00 0.00 5.52
78 79 3.064324 AGGCCATTGTTGCTCCGC 61.064 61.111 5.01 0.00 0.00 5.54
79 80 2.703798 CCAGGCCATTGTTGCTCCG 61.704 63.158 5.01 0.00 0.00 4.63
80 81 3.010413 GCCAGGCCATTGTTGCTCC 62.010 63.158 5.01 0.00 0.00 4.70
81 82 2.575461 GCCAGGCCATTGTTGCTC 59.425 61.111 5.01 0.00 0.00 4.26
100 101 3.730761 GAGTGCAGCAAGCCCGTG 61.731 66.667 0.00 0.00 44.83 4.94
103 104 3.368571 GTGGAGTGCAGCAAGCCC 61.369 66.667 11.32 7.08 44.83 5.19
104 105 2.595463 TGTGGAGTGCAGCAAGCC 60.595 61.111 0.00 1.65 44.83 4.35
105 106 1.168407 TTCTGTGGAGTGCAGCAAGC 61.168 55.000 0.00 0.00 45.96 4.01
106 107 1.002033 GTTTCTGTGGAGTGCAGCAAG 60.002 52.381 0.00 0.00 34.21 4.01
107 108 1.024271 GTTTCTGTGGAGTGCAGCAA 58.976 50.000 0.00 0.00 34.21 3.91
108 109 0.107263 TGTTTCTGTGGAGTGCAGCA 60.107 50.000 0.00 0.00 34.21 4.41
109 110 1.024271 TTGTTTCTGTGGAGTGCAGC 58.976 50.000 0.00 0.00 34.21 5.25
110 111 1.003545 CGTTGTTTCTGTGGAGTGCAG 60.004 52.381 0.00 0.00 35.43 4.41
111 112 1.013596 CGTTGTTTCTGTGGAGTGCA 58.986 50.000 0.00 0.00 0.00 4.57
112 113 0.307760 CCGTTGTTTCTGTGGAGTGC 59.692 55.000 0.00 0.00 0.00 4.40
113 114 1.330521 CACCGTTGTTTCTGTGGAGTG 59.669 52.381 0.00 0.00 0.00 3.51
114 115 1.208535 TCACCGTTGTTTCTGTGGAGT 59.791 47.619 0.00 0.00 0.00 3.85
115 116 1.948104 TCACCGTTGTTTCTGTGGAG 58.052 50.000 0.00 0.00 0.00 3.86
116 117 2.631160 ATCACCGTTGTTTCTGTGGA 57.369 45.000 0.00 0.00 0.00 4.02
117 118 4.062293 TCTAATCACCGTTGTTTCTGTGG 58.938 43.478 0.00 0.00 0.00 4.17
118 119 5.408299 TCATCTAATCACCGTTGTTTCTGTG 59.592 40.000 0.00 0.00 0.00 3.66
119 120 5.547465 TCATCTAATCACCGTTGTTTCTGT 58.453 37.500 0.00 0.00 0.00 3.41
120 121 6.668541 ATCATCTAATCACCGTTGTTTCTG 57.331 37.500 0.00 0.00 0.00 3.02
121 122 7.556844 AGTATCATCTAATCACCGTTGTTTCT 58.443 34.615 0.00 0.00 0.00 2.52
122 123 7.772332 AGTATCATCTAATCACCGTTGTTTC 57.228 36.000 0.00 0.00 0.00 2.78
123 124 7.414098 GCAAGTATCATCTAATCACCGTTGTTT 60.414 37.037 0.00 0.00 0.00 2.83
124 125 6.037172 GCAAGTATCATCTAATCACCGTTGTT 59.963 38.462 0.00 0.00 0.00 2.83
125 126 5.523916 GCAAGTATCATCTAATCACCGTTGT 59.476 40.000 0.00 0.00 0.00 3.32
126 127 5.755375 AGCAAGTATCATCTAATCACCGTTG 59.245 40.000 0.00 0.00 0.00 4.10
127 128 5.755375 CAGCAAGTATCATCTAATCACCGTT 59.245 40.000 0.00 0.00 0.00 4.44
128 129 5.069119 TCAGCAAGTATCATCTAATCACCGT 59.931 40.000 0.00 0.00 0.00 4.83
129 130 5.532557 TCAGCAAGTATCATCTAATCACCG 58.467 41.667 0.00 0.00 0.00 4.94
130 131 6.933521 ACATCAGCAAGTATCATCTAATCACC 59.066 38.462 0.00 0.00 0.00 4.02
131 132 7.117523 GGACATCAGCAAGTATCATCTAATCAC 59.882 40.741 0.00 0.00 0.00 3.06
132 133 7.157347 GGACATCAGCAAGTATCATCTAATCA 58.843 38.462 0.00 0.00 0.00 2.57
133 134 6.309980 CGGACATCAGCAAGTATCATCTAATC 59.690 42.308 0.00 0.00 0.00 1.75
134 135 6.162079 CGGACATCAGCAAGTATCATCTAAT 58.838 40.000 0.00 0.00 0.00 1.73
135 136 5.509670 CCGGACATCAGCAAGTATCATCTAA 60.510 44.000 0.00 0.00 0.00 2.10
136 137 4.021981 CCGGACATCAGCAAGTATCATCTA 60.022 45.833 0.00 0.00 0.00 1.98
137 138 3.244009 CCGGACATCAGCAAGTATCATCT 60.244 47.826 0.00 0.00 0.00 2.90
138 139 3.062763 CCGGACATCAGCAAGTATCATC 58.937 50.000 0.00 0.00 0.00 2.92
139 140 2.700371 TCCGGACATCAGCAAGTATCAT 59.300 45.455 0.00 0.00 0.00 2.45
140 141 2.107366 TCCGGACATCAGCAAGTATCA 58.893 47.619 0.00 0.00 0.00 2.15
141 142 2.101582 AGTCCGGACATCAGCAAGTATC 59.898 50.000 35.00 3.97 0.00 2.24
142 143 2.111384 AGTCCGGACATCAGCAAGTAT 58.889 47.619 35.00 8.09 0.00 2.12
143 144 1.557099 AGTCCGGACATCAGCAAGTA 58.443 50.000 35.00 0.00 0.00 2.24
144 145 1.478510 CTAGTCCGGACATCAGCAAGT 59.521 52.381 35.00 14.46 0.00 3.16
145 146 1.478510 ACTAGTCCGGACATCAGCAAG 59.521 52.381 35.00 20.41 0.00 4.01
146 147 1.476891 GACTAGTCCGGACATCAGCAA 59.523 52.381 35.00 10.89 0.00 3.91
147 148 1.103803 GACTAGTCCGGACATCAGCA 58.896 55.000 35.00 12.25 0.00 4.41
148 149 1.394618 AGACTAGTCCGGACATCAGC 58.605 55.000 35.00 21.41 0.00 4.26
149 150 2.544686 CGTAGACTAGTCCGGACATCAG 59.455 54.545 35.00 27.73 0.00 2.90
150 151 2.169144 TCGTAGACTAGTCCGGACATCA 59.831 50.000 35.00 18.82 0.00 3.07
151 152 2.831333 TCGTAGACTAGTCCGGACATC 58.169 52.381 35.00 26.73 0.00 3.06
152 153 2.996249 TCGTAGACTAGTCCGGACAT 57.004 50.000 35.00 20.57 0.00 3.06
153 154 2.433604 AGATCGTAGACTAGTCCGGACA 59.566 50.000 35.00 19.95 42.51 4.02
154 155 3.110447 AGATCGTAGACTAGTCCGGAC 57.890 52.381 27.67 27.67 42.51 4.79
155 156 3.834489 AAGATCGTAGACTAGTCCGGA 57.166 47.619 19.38 13.88 42.51 5.14
156 157 3.875727 TCAAAGATCGTAGACTAGTCCGG 59.124 47.826 19.38 8.96 42.51 5.14
157 158 5.444983 CATCAAAGATCGTAGACTAGTCCG 58.555 45.833 19.38 16.06 42.51 4.79
158 159 5.009210 AGCATCAAAGATCGTAGACTAGTCC 59.991 44.000 19.38 4.19 42.51 3.85
159 160 5.912396 CAGCATCAAAGATCGTAGACTAGTC 59.088 44.000 15.41 15.41 42.51 2.59
160 161 5.221145 CCAGCATCAAAGATCGTAGACTAGT 60.221 44.000 0.00 0.00 42.51 2.57
161 162 5.218885 CCAGCATCAAAGATCGTAGACTAG 58.781 45.833 0.00 0.00 42.51 2.57
162 163 4.499865 GCCAGCATCAAAGATCGTAGACTA 60.500 45.833 0.00 0.00 42.51 2.59
163 164 3.739519 GCCAGCATCAAAGATCGTAGACT 60.740 47.826 0.00 0.00 42.51 3.24
164 165 2.541762 GCCAGCATCAAAGATCGTAGAC 59.458 50.000 0.00 0.00 42.51 2.59
165 166 2.432146 AGCCAGCATCAAAGATCGTAGA 59.568 45.455 0.00 0.00 45.75 2.59
166 167 2.543012 CAGCCAGCATCAAAGATCGTAG 59.457 50.000 0.00 0.00 0.00 3.51
167 168 2.168313 TCAGCCAGCATCAAAGATCGTA 59.832 45.455 0.00 0.00 0.00 3.43
168 169 1.065926 TCAGCCAGCATCAAAGATCGT 60.066 47.619 0.00 0.00 0.00 3.73
169 170 1.660167 TCAGCCAGCATCAAAGATCG 58.340 50.000 0.00 0.00 0.00 3.69
170 171 3.380637 ACATTCAGCCAGCATCAAAGATC 59.619 43.478 0.00 0.00 0.00 2.75
171 172 3.362706 ACATTCAGCCAGCATCAAAGAT 58.637 40.909 0.00 0.00 0.00 2.40
172 173 2.799017 ACATTCAGCCAGCATCAAAGA 58.201 42.857 0.00 0.00 0.00 2.52
173 174 3.693085 AGTACATTCAGCCAGCATCAAAG 59.307 43.478 0.00 0.00 0.00 2.77
174 175 3.689347 AGTACATTCAGCCAGCATCAAA 58.311 40.909 0.00 0.00 0.00 2.69
175 176 3.354948 AGTACATTCAGCCAGCATCAA 57.645 42.857 0.00 0.00 0.00 2.57
176 177 3.452264 ACTAGTACATTCAGCCAGCATCA 59.548 43.478 0.00 0.00 0.00 3.07
177 178 4.054671 GACTAGTACATTCAGCCAGCATC 58.945 47.826 0.00 0.00 0.00 3.91
178 179 3.708631 AGACTAGTACATTCAGCCAGCAT 59.291 43.478 0.00 0.00 0.00 3.79
179 180 3.099905 AGACTAGTACATTCAGCCAGCA 58.900 45.455 0.00 0.00 0.00 4.41
180 181 3.810310 AGACTAGTACATTCAGCCAGC 57.190 47.619 0.00 0.00 0.00 4.85
181 182 5.809562 CAGAAAGACTAGTACATTCAGCCAG 59.190 44.000 13.95 0.00 0.00 4.85
182 183 5.480422 TCAGAAAGACTAGTACATTCAGCCA 59.520 40.000 13.95 0.00 0.00 4.75
183 184 5.967088 TCAGAAAGACTAGTACATTCAGCC 58.033 41.667 13.95 0.00 0.00 4.85
184 185 6.626302 ACTCAGAAAGACTAGTACATTCAGC 58.374 40.000 13.95 0.00 0.00 4.26
185 186 8.952278 ACTACTCAGAAAGACTAGTACATTCAG 58.048 37.037 13.95 8.37 28.07 3.02
186 187 8.865420 ACTACTCAGAAAGACTAGTACATTCA 57.135 34.615 13.95 0.00 28.07 2.57
187 188 9.169592 AGACTACTCAGAAAGACTAGTACATTC 57.830 37.037 0.00 0.96 29.45 2.67
188 189 9.523168 AAGACTACTCAGAAAGACTAGTACATT 57.477 33.333 0.00 0.00 29.45 2.71
193 194 8.463607 GCAATAAGACTACTCAGAAAGACTAGT 58.536 37.037 0.00 0.00 31.21 2.57
194 195 8.682710 AGCAATAAGACTACTCAGAAAGACTAG 58.317 37.037 0.00 0.00 0.00 2.57
195 196 8.582657 AGCAATAAGACTACTCAGAAAGACTA 57.417 34.615 0.00 0.00 0.00 2.59
196 197 7.475137 AGCAATAAGACTACTCAGAAAGACT 57.525 36.000 0.00 0.00 0.00 3.24
197 198 8.463607 AGTAGCAATAAGACTACTCAGAAAGAC 58.536 37.037 0.00 0.00 44.48 3.01
198 199 8.582657 AGTAGCAATAAGACTACTCAGAAAGA 57.417 34.615 0.00 0.00 44.48 2.52
207 208 7.519032 AGATCTGGAGTAGCAATAAGACTAC 57.481 40.000 0.00 0.00 39.25 2.73
208 209 9.642343 TTTAGATCTGGAGTAGCAATAAGACTA 57.358 33.333 5.18 0.00 0.00 2.59
209 210 8.540507 TTTAGATCTGGAGTAGCAATAAGACT 57.459 34.615 5.18 0.00 0.00 3.24
210 211 9.601217 TTTTTAGATCTGGAGTAGCAATAAGAC 57.399 33.333 5.18 0.00 0.00 3.01
236 237 5.130145 TCCATATGAATTCGCCCCAATTTTT 59.870 36.000 3.65 0.00 0.00 1.94
237 238 4.653341 TCCATATGAATTCGCCCCAATTTT 59.347 37.500 3.65 0.00 0.00 1.82
238 239 4.222336 TCCATATGAATTCGCCCCAATTT 58.778 39.130 3.65 0.00 0.00 1.82
239 240 3.828451 CTCCATATGAATTCGCCCCAATT 59.172 43.478 3.65 0.00 0.00 2.32
240 241 3.181429 ACTCCATATGAATTCGCCCCAAT 60.181 43.478 3.65 0.00 0.00 3.16
241 242 2.174639 ACTCCATATGAATTCGCCCCAA 59.825 45.455 3.65 0.00 0.00 4.12
242 243 1.774254 ACTCCATATGAATTCGCCCCA 59.226 47.619 3.65 0.00 0.00 4.96
243 244 2.554032 CAACTCCATATGAATTCGCCCC 59.446 50.000 3.65 0.00 0.00 5.80
244 245 2.554032 CCAACTCCATATGAATTCGCCC 59.446 50.000 3.65 0.00 0.00 6.13
245 246 3.476552 TCCAACTCCATATGAATTCGCC 58.523 45.455 3.65 0.00 0.00 5.54
246 247 4.756642 TGATCCAACTCCATATGAATTCGC 59.243 41.667 3.65 0.00 0.00 4.70
247 248 5.759763 TGTGATCCAACTCCATATGAATTCG 59.240 40.000 3.65 0.00 0.00 3.34
248 249 7.446319 TGATGTGATCCAACTCCATATGAATTC 59.554 37.037 3.65 0.00 0.00 2.17
249 250 7.230108 GTGATGTGATCCAACTCCATATGAATT 59.770 37.037 3.65 0.00 0.00 2.17
250 251 6.713903 GTGATGTGATCCAACTCCATATGAAT 59.286 38.462 3.65 0.00 0.00 2.57
251 252 6.057533 GTGATGTGATCCAACTCCATATGAA 58.942 40.000 3.65 0.00 0.00 2.57
252 253 5.614308 GTGATGTGATCCAACTCCATATGA 58.386 41.667 3.65 0.00 0.00 2.15
253 254 4.450080 CGTGATGTGATCCAACTCCATATG 59.550 45.833 0.00 0.00 0.00 1.78
254 255 4.344968 TCGTGATGTGATCCAACTCCATAT 59.655 41.667 0.00 0.00 0.00 1.78
255 256 3.704061 TCGTGATGTGATCCAACTCCATA 59.296 43.478 0.00 0.00 0.00 2.74
256 257 2.501316 TCGTGATGTGATCCAACTCCAT 59.499 45.455 0.00 0.00 0.00 3.41
257 258 1.899142 TCGTGATGTGATCCAACTCCA 59.101 47.619 0.00 0.00 0.00 3.86
258 259 2.672961 TCGTGATGTGATCCAACTCC 57.327 50.000 0.00 0.00 0.00 3.85
259 260 5.356882 TTTTTCGTGATGTGATCCAACTC 57.643 39.130 0.00 0.00 0.00 3.01
260 261 5.964958 ATTTTTCGTGATGTGATCCAACT 57.035 34.783 0.00 0.00 0.00 3.16
261 262 6.258160 CCTATTTTTCGTGATGTGATCCAAC 58.742 40.000 0.00 0.00 0.00 3.77
262 263 5.356751 CCCTATTTTTCGTGATGTGATCCAA 59.643 40.000 0.00 0.00 0.00 3.53
263 264 4.881273 CCCTATTTTTCGTGATGTGATCCA 59.119 41.667 0.00 0.00 0.00 3.41
264 265 4.881850 ACCCTATTTTTCGTGATGTGATCC 59.118 41.667 0.00 0.00 0.00 3.36
265 266 5.584649 TCACCCTATTTTTCGTGATGTGATC 59.415 40.000 0.00 0.00 30.52 2.92
266 267 5.496556 TCACCCTATTTTTCGTGATGTGAT 58.503 37.500 0.00 0.00 30.52 3.06
267 268 4.900684 TCACCCTATTTTTCGTGATGTGA 58.099 39.130 0.00 0.00 30.52 3.58
268 269 5.621197 TTCACCCTATTTTTCGTGATGTG 57.379 39.130 0.00 0.00 35.31 3.21
269 270 6.432783 TGAATTCACCCTATTTTTCGTGATGT 59.567 34.615 3.38 0.00 35.31 3.06
270 271 6.851609 TGAATTCACCCTATTTTTCGTGATG 58.148 36.000 3.38 0.00 35.31 3.07
271 272 7.645058 ATGAATTCACCCTATTTTTCGTGAT 57.355 32.000 11.07 0.00 35.31 3.06
272 273 8.620416 CATATGAATTCACCCTATTTTTCGTGA 58.380 33.333 11.07 0.00 33.56 4.35
273 274 7.862372 CCATATGAATTCACCCTATTTTTCGTG 59.138 37.037 11.07 0.00 0.00 4.35
274 275 7.014230 CCCATATGAATTCACCCTATTTTTCGT 59.986 37.037 11.07 0.00 0.00 3.85
275 276 7.370383 CCCATATGAATTCACCCTATTTTTCG 58.630 38.462 11.07 0.00 0.00 3.46
276 277 7.508977 TCCCCATATGAATTCACCCTATTTTTC 59.491 37.037 11.07 0.00 0.00 2.29
277 278 7.369434 TCCCCATATGAATTCACCCTATTTTT 58.631 34.615 11.07 0.00 0.00 1.94
278 279 6.932753 TCCCCATATGAATTCACCCTATTTT 58.067 36.000 11.07 0.00 0.00 1.82
279 280 6.104691 ACTCCCCATATGAATTCACCCTATTT 59.895 38.462 11.07 0.00 0.00 1.40
280 281 5.616986 ACTCCCCATATGAATTCACCCTATT 59.383 40.000 11.07 0.00 0.00 1.73
281 282 5.173246 ACTCCCCATATGAATTCACCCTAT 58.827 41.667 11.07 2.16 0.00 2.57
282 283 4.577096 ACTCCCCATATGAATTCACCCTA 58.423 43.478 11.07 0.00 0.00 3.53
283 284 3.407209 ACTCCCCATATGAATTCACCCT 58.593 45.455 11.07 0.00 0.00 4.34
284 285 3.884037 ACTCCCCATATGAATTCACCC 57.116 47.619 11.07 0.00 0.00 4.61
285 286 3.891366 CCAACTCCCCATATGAATTCACC 59.109 47.826 11.07 0.00 0.00 4.02
286 287 4.792068 TCCAACTCCCCATATGAATTCAC 58.208 43.478 11.07 0.00 0.00 3.18
287 288 5.134169 TGATCCAACTCCCCATATGAATTCA 59.866 40.000 11.26 11.26 0.00 2.57
288 289 5.474876 GTGATCCAACTCCCCATATGAATTC 59.525 44.000 3.65 0.00 0.00 2.17
289 290 5.103558 TGTGATCCAACTCCCCATATGAATT 60.104 40.000 3.65 0.00 0.00 2.17
290 291 4.416513 TGTGATCCAACTCCCCATATGAAT 59.583 41.667 3.65 0.00 0.00 2.57
291 292 3.785325 TGTGATCCAACTCCCCATATGAA 59.215 43.478 3.65 0.00 0.00 2.57
292 293 3.392730 TGTGATCCAACTCCCCATATGA 58.607 45.455 3.65 0.00 0.00 2.15
293 294 3.862877 TGTGATCCAACTCCCCATATG 57.137 47.619 0.00 0.00 0.00 1.78
294 295 3.982730 TGATGTGATCCAACTCCCCATAT 59.017 43.478 0.00 0.00 0.00 1.78
295 296 3.136443 GTGATGTGATCCAACTCCCCATA 59.864 47.826 0.00 0.00 0.00 2.74
296 297 2.092212 GTGATGTGATCCAACTCCCCAT 60.092 50.000 0.00 0.00 0.00 4.00
297 298 1.281867 GTGATGTGATCCAACTCCCCA 59.718 52.381 0.00 0.00 0.00 4.96
298 299 1.281867 TGTGATGTGATCCAACTCCCC 59.718 52.381 0.00 0.00 0.00 4.81
299 300 2.237143 TCTGTGATGTGATCCAACTCCC 59.763 50.000 0.00 0.00 0.00 4.30
319 320 3.067742 CAGAGACATGAATTGCCCCATTC 59.932 47.826 0.00 0.00 0.00 2.67
361 362 9.413734 CATTATCCTCTTTAATTCTGGTTTCCT 57.586 33.333 0.00 0.00 0.00 3.36
388 389 4.545610 TGAGCTGAAATTTTTAGCAACCG 58.454 39.130 23.02 0.00 39.84 4.44
479 480 2.668550 ACGGCGCCTGGTTTCTTC 60.669 61.111 26.68 0.00 0.00 2.87
492 493 2.138320 CATCCATACATGACAGACGGC 58.862 52.381 0.00 0.00 0.00 5.68
506 507 2.374504 GGAGTGTCATCCATCCATCCAT 59.625 50.000 0.00 0.00 39.34 3.41
507 508 1.770658 GGAGTGTCATCCATCCATCCA 59.229 52.381 0.00 0.00 39.34 3.41
508 509 2.053244 AGGAGTGTCATCCATCCATCC 58.947 52.381 0.00 0.00 42.26 3.51
509 510 3.900601 ACTAGGAGTGTCATCCATCCATC 59.099 47.826 0.00 0.00 42.26 3.51
659 661 3.758172 GGCCTCTCGTTTTTGCCA 58.242 55.556 0.00 0.00 41.76 4.92
715 729 0.958091 TTCTGGTGCGATTTTGGGTG 59.042 50.000 0.00 0.00 0.00 4.61
716 730 1.698506 TTTCTGGTGCGATTTTGGGT 58.301 45.000 0.00 0.00 0.00 4.51
717 731 4.097741 TGATATTTCTGGTGCGATTTTGGG 59.902 41.667 0.00 0.00 0.00 4.12
802 816 1.308998 CACTGCTCCGGTCTGTTTTT 58.691 50.000 0.00 0.00 0.00 1.94
809 823 2.740055 CACTGCACTGCTCCGGTC 60.740 66.667 0.00 0.00 0.00 4.79
851 865 0.600255 ATAATACCCACGAGCGCTGC 60.600 55.000 18.48 5.60 0.00 5.25
957 971 1.305381 AGGTGGAGAGAGGGGAACG 60.305 63.158 0.00 0.00 0.00 3.95
969 983 4.289101 TCCGTCGTGGGAGGTGGA 62.289 66.667 0.00 0.00 38.76 4.02
1267 1514 1.978580 ACCTCCCGAGAAGAAACACAT 59.021 47.619 0.00 0.00 0.00 3.21
1499 1746 2.135933 GCCTTACGCCACTGATGATAC 58.864 52.381 0.00 0.00 0.00 2.24
3647 4917 5.046591 TCTCTTCCCACTATTTCGAACATGT 60.047 40.000 0.00 0.00 0.00 3.21
3683 4953 9.347240 ACAATAATCACTTAGCATCTTAGCAAT 57.653 29.630 0.00 0.00 36.85 3.56
3768 5112 2.159544 ACGTGTAGCGCTTAAGAGACTC 60.160 50.000 18.68 6.48 46.11 3.36
3775 5119 4.459606 CATTTTTCACGTGTAGCGCTTAA 58.540 39.130 18.68 0.03 46.11 1.85
3947 5291 7.761704 TGAGTCGAAGAGAATTCTAATTGAAGG 59.238 37.037 8.25 0.00 36.95 3.46
3967 5311 6.668541 ACCAATGAAGTGAATATTGAGTCG 57.331 37.500 0.00 0.00 34.55 4.18
4081 5425 5.401531 AGTTACGCAACTCATTCTTCCTA 57.598 39.130 0.00 0.00 41.25 2.94
4185 5529 3.834231 CCCCATCATTCATTCCCCATAAC 59.166 47.826 0.00 0.00 0.00 1.89
4186 5530 3.470538 ACCCCATCATTCATTCCCCATAA 59.529 43.478 0.00 0.00 0.00 1.90
4234 5638 5.069648 TCCAGAAATGACTAGCAGATGTAGG 59.930 44.000 0.00 0.00 0.00 3.18
4418 5825 3.953612 TGGAATGTGCAAGGCCTAATTAG 59.046 43.478 5.16 5.43 0.00 1.73
4419 5826 3.974719 TGGAATGTGCAAGGCCTAATTA 58.025 40.909 5.16 0.00 0.00 1.40
4420 5827 2.818921 TGGAATGTGCAAGGCCTAATT 58.181 42.857 5.16 1.10 0.00 1.40
4421 5828 2.530460 TGGAATGTGCAAGGCCTAAT 57.470 45.000 5.16 0.00 0.00 1.73
4422 5829 2.530460 ATGGAATGTGCAAGGCCTAA 57.470 45.000 5.16 0.00 0.00 2.69
4423 5830 2.530460 AATGGAATGTGCAAGGCCTA 57.470 45.000 5.16 0.00 0.00 3.93
4424 5831 1.551883 GAAATGGAATGTGCAAGGCCT 59.448 47.619 0.00 0.00 0.00 5.19
4452 5859 6.369340 TGTTTTCTGATGCATTTAATTGGCTG 59.631 34.615 0.00 0.00 0.00 4.85
4514 5921 0.685097 TTCTCCTGTCTTTGACCCGG 59.315 55.000 0.00 0.00 0.00 5.73
4542 5949 3.071457 TCACCTGAGCATCACTTTTCTCA 59.929 43.478 0.00 0.00 42.56 3.27
4631 6038 8.116907 TGCTTAGCATTATCAACCTGAGTTAGG 61.117 40.741 1.39 0.00 42.72 2.69
4650 6057 5.403466 CAGGTTTCAATTTCACTTGCTTAGC 59.597 40.000 0.00 0.00 0.00 3.09
4652 6059 6.707440 TCAGGTTTCAATTTCACTTGCTTA 57.293 33.333 0.00 0.00 0.00 3.09
4671 6078 3.129287 ACAGTGTCTTTGTTTGCTTCAGG 59.871 43.478 0.00 0.00 0.00 3.86
4699 6106 8.283291 GGTAGTGACAAGAACAAAAAGACATAG 58.717 37.037 0.00 0.00 0.00 2.23
4813 6220 6.038714 CCATAGGATTTTAGGTGCAGAAGAAC 59.961 42.308 0.00 0.00 0.00 3.01
4889 6296 6.402550 CCGGTAATTTCTCAACACTCTGAATG 60.403 42.308 0.00 0.00 0.00 2.67
4923 6330 2.019249 TGAGCTTGCTCCATTATGTGC 58.981 47.619 18.48 0.00 0.00 4.57
4934 6341 1.003349 AGTTCTCTGCATGAGCTTGCT 59.997 47.619 11.51 0.00 43.18 3.91
4945 6352 7.475840 CCCATTCTGTATTTTTAGTTCTCTGC 58.524 38.462 0.00 0.00 0.00 4.26
5170 6577 2.923121 TCTCAGCTGAAAACACTTGCT 58.077 42.857 18.85 0.00 0.00 3.91
5200 6607 5.841957 AATGCCATGAAGATACTTGGAAC 57.158 39.130 0.00 0.00 37.29 3.62
5489 6896 1.725641 TCACATGACCATCAGAACGC 58.274 50.000 0.00 0.00 0.00 4.84
5990 7398 2.385765 TCCTTTCTAGGGGAGGAACTGA 59.614 50.000 7.06 0.00 40.10 3.41
6030 7438 8.602472 AAATTGGAACAGGTATAAAGCCATAA 57.398 30.769 0.00 0.00 42.39 1.90
6062 7470 2.423926 CTGGTACGGTATAGCAGCAG 57.576 55.000 2.37 5.07 36.45 4.24
6099 7507 3.819337 GAGGCTGTGTGTAGTATATCGGA 59.181 47.826 0.00 0.00 0.00 4.55
6135 7543 1.233019 GGTTGATGCCAGATGGATCG 58.767 55.000 2.18 0.00 37.39 3.69
6210 7618 6.046290 TGTCTGTGTTCATCAATCTCTGAT 57.954 37.500 0.00 0.00 46.25 2.90
6246 7654 0.527113 TTGAATGATGCAACCGCTGG 59.473 50.000 0.00 0.00 39.64 4.85
6548 7956 9.995003 TTTGCAGAATATTTAGGTTTGACAAAT 57.005 25.926 3.49 0.00 0.00 2.32
6553 7961 9.638239 GTGAATTTGCAGAATATTTAGGTTTGA 57.362 29.630 0.00 0.00 0.00 2.69
6566 7974 5.298347 TGCATGATTTGTGAATTTGCAGAA 58.702 33.333 0.00 0.00 38.58 3.02
6588 7996 7.201182 GCGAAAAAGAATATATAAGTGCGCATG 60.201 37.037 15.91 0.00 38.26 4.06
6611 8019 3.859411 AGAAAAACCAAGTGTTTGCGA 57.141 38.095 0.00 0.00 46.39 5.10
6702 8110 4.077822 CCTTGATTCTTGGTCTTTGCTCT 58.922 43.478 0.00 0.00 0.00 4.09
6723 8131 1.044611 TTTGGCTAACAAACTGCCCC 58.955 50.000 0.00 0.00 43.81 5.80
6735 8143 3.820557 AGCTGACTTGAGTTTTTGGCTA 58.179 40.909 0.00 0.00 0.00 3.93
6774 8182 8.603242 ATTAACAACGTCACTAATCTGTTTCT 57.397 30.769 3.59 0.00 0.00 2.52
6783 8191 6.367695 CAGTCATGGATTAACAACGTCACTAA 59.632 38.462 0.00 0.00 0.00 2.24
6790 8198 4.253685 AGGACAGTCATGGATTAACAACG 58.746 43.478 2.17 0.00 0.00 4.10
6810 8218 3.343617 TGGGAAGCGAAGTATCAAAAGG 58.656 45.455 0.00 0.00 0.00 3.11
6833 8241 7.992295 TCTTACCAGTTACTTTAAATTCCCCT 58.008 34.615 0.00 0.00 0.00 4.79
6834 8242 7.886970 ACTCTTACCAGTTACTTTAAATTCCCC 59.113 37.037 0.00 0.00 0.00 4.81
6836 8244 9.498176 TCACTCTTACCAGTTACTTTAAATTCC 57.502 33.333 0.00 0.00 0.00 3.01
6840 8248 9.333724 CCTTTCACTCTTACCAGTTACTTTAAA 57.666 33.333 0.00 0.00 0.00 1.52
6841 8249 7.443272 GCCTTTCACTCTTACCAGTTACTTTAA 59.557 37.037 0.00 0.00 0.00 1.52
6842 8250 6.932960 GCCTTTCACTCTTACCAGTTACTTTA 59.067 38.462 0.00 0.00 0.00 1.85
6844 8252 5.071923 AGCCTTTCACTCTTACCAGTTACTT 59.928 40.000 0.00 0.00 0.00 2.24
6885 8302 3.868619 TGTACAAAAGGCTAACCCTGT 57.131 42.857 0.00 0.00 45.62 4.00
6921 8338 6.434596 CATGTCAATAAACAACCGACAAAGA 58.565 36.000 0.00 0.00 39.80 2.52
6960 8379 4.697352 CCAGAGGATTTTCAATTCGACACT 59.303 41.667 0.00 0.00 0.00 3.55
6961 8380 4.142600 CCCAGAGGATTTTCAATTCGACAC 60.143 45.833 0.00 0.00 33.47 3.67
7306 14076 2.417719 CTGGTCGGTTGGAGAAAGAAG 58.582 52.381 0.00 0.00 0.00 2.85
7321 14091 1.375098 GCATCTGCAGAAGCCTGGTC 61.375 60.000 29.06 4.60 40.72 4.02
7365 14135 6.175471 AGATTGAGAAGTGCATGTGTAATGA 58.825 36.000 0.00 0.00 0.00 2.57
7392 14162 8.603898 TTTTGTAAGATAGAGTGACAGGGATA 57.396 34.615 0.00 0.00 0.00 2.59
7394 14164 6.497259 ACTTTTGTAAGATAGAGTGACAGGGA 59.503 38.462 0.00 0.00 35.30 4.20
7400 14170 6.995686 TGGCAAACTTTTGTAAGATAGAGTGA 59.004 34.615 3.74 0.00 40.24 3.41
7496 14267 2.721274 TTGGCACCAAACGATTGATG 57.279 45.000 7.03 0.39 38.94 3.07
7503 14274 0.893270 TCCAGGATTGGCACCAAACG 60.893 55.000 6.14 0.00 44.63 3.60
7519 14290 2.844654 AGAGAAGATGCTCCTCTCCA 57.155 50.000 7.68 0.00 35.49 3.86
7586 14357 1.610102 GCAGTGCAGGAGAAGATGTGT 60.610 52.381 11.09 0.00 0.00 3.72
7643 14414 2.985512 GATTCCTGCGATCGGCTGCT 62.986 60.000 18.30 1.70 44.05 4.24
7679 14450 0.733729 CTCTCATGAGCTTGCTTGGC 59.266 55.000 18.36 0.00 33.12 4.52
7709 14480 2.616458 GGTCCCTCCATTGCCACCT 61.616 63.158 0.00 0.00 35.97 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.