Multiple sequence alignment - TraesCS4A01G200100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G200100 chr4A 100.000 7106 0 0 1 7106 488258189 488251084 0.000000e+00 13123.0
1 TraesCS4A01G200100 chr4A 88.194 144 17 0 28 171 683889122 683889265 9.480000e-39 172.0
2 TraesCS4A01G200100 chr4A 91.860 86 7 0 5853 5938 472961343 472961258 3.480000e-23 121.0
3 TraesCS4A01G200100 chr4D 96.051 6280 166 31 460 6704 93603995 93610227 0.000000e+00 10148.0
4 TraesCS4A01G200100 chr4D 92.604 338 14 7 6774 7103 93610247 93610581 6.450000e-130 475.0
5 TraesCS4A01G200100 chr4D 88.811 143 16 0 29 171 326379878 326380020 7.330000e-40 176.0
6 TraesCS4A01G200100 chr4D 88.276 145 15 2 28 171 459818947 459819090 9.480000e-39 172.0
7 TraesCS4A01G200100 chr4B 97.186 5081 104 19 1651 6712 132049042 132054102 0.000000e+00 8554.0
8 TraesCS4A01G200100 chr4B 94.360 1117 43 12 558 1663 132047775 132048882 0.000000e+00 1696.0
9 TraesCS4A01G200100 chr4B 85.054 368 22 9 6741 7103 132054097 132054436 1.900000e-90 344.0
10 TraesCS4A01G200100 chr4B 88.966 145 15 1 28 171 1256964 1257108 2.040000e-40 178.0
11 TraesCS4A01G200100 chr4B 87.736 106 7 4 4636 4739 124737578 124737679 1.250000e-22 119.0
12 TraesCS4A01G200100 chr5D 74.949 495 87 21 2564 3045 212561534 212562004 7.270000e-45 193.0
13 TraesCS4A01G200100 chr5D 84.302 172 24 3 1000 1171 212559478 212559646 1.590000e-36 165.0
14 TraesCS4A01G200100 chr5D 78.481 158 31 3 2319 2474 212561016 212561172 4.540000e-17 100.0
15 TraesCS4A01G200100 chr5D 90.141 71 6 1 5033 5103 284894994 284894925 2.730000e-14 91.6
16 TraesCS4A01G200100 chr5D 97.297 37 1 0 6708 6744 16594499 16594463 5.950000e-06 63.9
17 TraesCS4A01G200100 chr5D 94.872 39 1 1 6698 6736 102287141 102287178 7.700000e-05 60.2
18 TraesCS4A01G200100 chr3B 88.889 144 16 0 28 171 474408688 474408545 2.040000e-40 178.0
19 TraesCS4A01G200100 chr3B 89.247 93 9 1 4642 4734 373628847 373628756 1.620000e-21 115.0
20 TraesCS4A01G200100 chr3B 94.444 36 1 1 6703 6737 791622079 791622114 4.000000e-03 54.7
21 TraesCS4A01G200100 chr2A 88.966 145 13 3 28 171 58665794 58665936 7.330000e-40 176.0
22 TraesCS4A01G200100 chr2A 92.537 67 4 1 5033 5098 16378782 16378848 2.110000e-15 95.3
23 TraesCS4A01G200100 chr3D 88.732 142 16 0 28 169 1663156 1663015 2.630000e-39 174.0
24 TraesCS4A01G200100 chr3A 88.194 144 17 0 28 171 485686637 485686494 9.480000e-39 172.0
25 TraesCS4A01G200100 chr3A 88.276 145 15 2 28 171 534365371 534365228 9.480000e-39 172.0
26 TraesCS4A01G200100 chr3A 94.872 39 1 1 6700 6738 194703873 194703910 7.700000e-05 60.2
27 TraesCS4A01G200100 chr3A 89.583 48 3 2 6699 6745 369398382 369398336 7.700000e-05 60.2
28 TraesCS4A01G200100 chr5B 74.141 495 91 21 2564 3045 226628827 226629297 3.410000e-38 171.0
29 TraesCS4A01G200100 chr5B 79.245 159 28 5 2319 2474 226628320 226628476 9.750000e-19 106.0
30 TraesCS4A01G200100 chr5A 85.093 161 24 0 1011 1171 275953113 275953273 1.590000e-36 165.0
31 TraesCS4A01G200100 chr5A 88.991 109 12 0 2937 3045 275955680 275955788 1.240000e-27 135.0
32 TraesCS4A01G200100 chr5A 94.118 85 5 0 5853 5937 370102518 370102434 5.780000e-26 130.0
33 TraesCS4A01G200100 chr5A 79.874 159 27 5 2319 2474 275954676 275954832 2.100000e-20 111.0
34 TraesCS4A01G200100 chr5A 95.122 41 2 0 6709 6749 41352152 41352112 1.650000e-06 65.8
35 TraesCS4A01G200100 chr5A 94.872 39 1 1 6698 6736 97225793 97225756 7.700000e-05 60.2
36 TraesCS4A01G200100 chr1D 92.929 99 7 0 5852 5950 449276393 449276295 2.070000e-30 145.0
37 TraesCS4A01G200100 chr6B 94.253 87 5 0 5853 5939 680933309 680933223 4.470000e-27 134.0
38 TraesCS4A01G200100 chr6B 90.217 92 4 1 4642 4733 89141859 89141945 1.620000e-21 115.0
39 TraesCS4A01G200100 chr6B 100.000 56 0 0 5033 5088 554790053 554790108 3.510000e-18 104.0
40 TraesCS4A01G200100 chr6B 93.023 43 2 1 6695 6736 205092366 205092324 2.140000e-05 62.1
41 TraesCS4A01G200100 chr2B 93.333 90 4 1 5850 5937 258639667 258639578 1.610000e-26 132.0
42 TraesCS4A01G200100 chr2B 93.023 86 6 0 5853 5938 491348056 491347971 7.480000e-25 126.0
43 TraesCS4A01G200100 chr1A 90.099 101 8 1 5852 5950 544467010 544466910 5.780000e-26 130.0
44 TraesCS4A01G200100 chrUn 88.776 98 7 4 4636 4732 19782886 19782980 4.500000e-22 117.0
45 TraesCS4A01G200100 chr7D 91.011 89 5 3 5003 5088 246031078 246031166 4.500000e-22 117.0
46 TraesCS4A01G200100 chr7D 87.500 80 6 4 5003 5080 108762189 108762266 9.820000e-14 89.8
47 TraesCS4A01G200100 chr7B 88.235 102 4 4 4636 4734 588501367 588501271 1.620000e-21 115.0
48 TraesCS4A01G200100 chr7B 89.888 89 6 3 5003 5088 222306771 222306859 2.100000e-20 111.0
49 TraesCS4A01G200100 chr1B 90.805 87 6 1 4642 4728 645367070 645366986 1.620000e-21 115.0
50 TraesCS4A01G200100 chr1B 97.297 37 0 1 6700 6736 667087245 667087210 2.140000e-05 62.1
51 TraesCS4A01G200100 chr7A 85.577 104 8 4 4630 4732 177329647 177329744 1.260000e-17 102.0
52 TraesCS4A01G200100 chr6D 94.030 67 3 1 5033 5098 267532888 267532954 4.540000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G200100 chr4A 488251084 488258189 7105 True 13123.000000 13123 100.0000 1 7106 1 chr4A.!!$R2 7105
1 TraesCS4A01G200100 chr4D 93603995 93610581 6586 False 5311.500000 10148 94.3275 460 7103 2 chr4D.!!$F3 6643
2 TraesCS4A01G200100 chr4B 132047775 132054436 6661 False 3531.333333 8554 92.2000 558 7103 3 chr4B.!!$F3 6545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 206 0.105964 TCCACTCCACGAAGTTGGTG 59.894 55.0 10.79 10.79 41.61 4.17 F
206 207 0.105964 CCACTCCACGAAGTTGGTGA 59.894 55.0 18.49 5.09 41.61 4.02 F
442 443 0.108585 AAAAAGTGCCCTCGAGAGCA 59.891 50.0 18.54 18.54 36.44 4.26 F
443 444 0.321122 AAAAGTGCCCTCGAGAGCAG 60.321 55.0 22.97 4.65 40.28 4.24 F
1260 1271 0.511653 GACGTGGTTCGCTTTTCTCC 59.488 55.0 0.00 0.00 44.19 3.71 F
2300 2507 0.676466 TGCGGCCATCAAAAGACGAT 60.676 50.0 2.24 0.00 0.00 3.73 F
3326 3533 0.740868 TCGCTGATTTTGAGGAGGCG 60.741 55.0 0.00 0.00 42.00 5.52 F
3652 3860 0.893727 TCGTAGCAGGCAGTCTGTCA 60.894 55.0 7.30 0.00 45.08 3.58 F
4552 4770 1.190643 AGAGTCTGGCCAGAACTAGC 58.809 55.0 36.66 23.22 39.48 3.42 F
5551 5773 2.167900 GGTTCTGTTACCAGCCTATCGT 59.832 50.0 0.00 0.00 38.66 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1262 1273 0.321564 TCCTCACCTGCATTTCACCG 60.322 55.000 0.0 0.0 0.00 4.94 R
1496 1518 0.403655 TCATTGCAACCACCAGCCTA 59.596 50.000 0.0 0.0 0.00 3.93 R
1498 1520 0.609662 AATCATTGCAACCACCAGCC 59.390 50.000 0.0 0.0 0.00 4.85 R
1584 1615 3.379240 CATGTTTGTTTCAATGACGGCA 58.621 40.909 0.0 0.0 0.00 5.69 R
3230 3437 0.326264 TCTCAGAGCAAGCCTTTCCC 59.674 55.000 0.0 0.0 0.00 3.97 R
4119 4337 1.471684 CTTTGCTTCTGATCTGTGGCC 59.528 52.381 0.0 0.0 0.00 5.36 R
4793 5011 1.005450 TGGTGAGAAAGTTATGGGGGC 59.995 52.381 0.0 0.0 0.00 5.80 R
5626 5848 1.656652 CTAATGGGTGGAGTTCAGCG 58.343 55.000 0.0 0.0 44.29 5.18 R
6093 6316 0.461961 AGAGACCTTACAGGCGATGC 59.538 55.000 0.0 0.0 39.63 3.91 R
6749 6981 0.036010 CCATTGGAACTCGGCTGTCT 60.036 55.000 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.098914 TGAAATACCCCATAGCACCATC 57.901 45.455 0.00 0.00 0.00 3.51
22 23 3.461458 TGAAATACCCCATAGCACCATCA 59.539 43.478 0.00 0.00 0.00 3.07
23 24 3.508845 AATACCCCATAGCACCATCAC 57.491 47.619 0.00 0.00 0.00 3.06
24 25 1.886422 TACCCCATAGCACCATCACA 58.114 50.000 0.00 0.00 0.00 3.58
25 26 0.255890 ACCCCATAGCACCATCACAC 59.744 55.000 0.00 0.00 0.00 3.82
26 27 0.255604 CCCCATAGCACCATCACACA 59.744 55.000 0.00 0.00 0.00 3.72
27 28 1.382522 CCCATAGCACCATCACACAC 58.617 55.000 0.00 0.00 0.00 3.82
28 29 1.065199 CCCATAGCACCATCACACACT 60.065 52.381 0.00 0.00 0.00 3.55
29 30 2.283298 CCATAGCACCATCACACACTC 58.717 52.381 0.00 0.00 0.00 3.51
30 31 2.283298 CATAGCACCATCACACACTCC 58.717 52.381 0.00 0.00 0.00 3.85
31 32 0.246360 TAGCACCATCACACACTCCG 59.754 55.000 0.00 0.00 0.00 4.63
32 33 1.301716 GCACCATCACACACTCCGT 60.302 57.895 0.00 0.00 0.00 4.69
33 34 0.884704 GCACCATCACACACTCCGTT 60.885 55.000 0.00 0.00 0.00 4.44
34 35 1.593196 CACCATCACACACTCCGTTT 58.407 50.000 0.00 0.00 0.00 3.60
35 36 1.531149 CACCATCACACACTCCGTTTC 59.469 52.381 0.00 0.00 0.00 2.78
36 37 1.416401 ACCATCACACACTCCGTTTCT 59.584 47.619 0.00 0.00 0.00 2.52
37 38 2.631062 ACCATCACACACTCCGTTTCTA 59.369 45.455 0.00 0.00 0.00 2.10
38 39 3.070446 ACCATCACACACTCCGTTTCTAA 59.930 43.478 0.00 0.00 0.00 2.10
39 40 4.062293 CCATCACACACTCCGTTTCTAAA 58.938 43.478 0.00 0.00 0.00 1.85
40 41 4.695455 CCATCACACACTCCGTTTCTAAAT 59.305 41.667 0.00 0.00 0.00 1.40
41 42 5.872617 CCATCACACACTCCGTTTCTAAATA 59.127 40.000 0.00 0.00 0.00 1.40
42 43 6.538742 CCATCACACACTCCGTTTCTAAATAT 59.461 38.462 0.00 0.00 0.00 1.28
43 44 7.709182 CCATCACACACTCCGTTTCTAAATATA 59.291 37.037 0.00 0.00 0.00 0.86
44 45 9.093970 CATCACACACTCCGTTTCTAAATATAA 57.906 33.333 0.00 0.00 0.00 0.98
45 46 8.697846 TCACACACTCCGTTTCTAAATATAAG 57.302 34.615 0.00 0.00 0.00 1.73
46 47 8.308931 TCACACACTCCGTTTCTAAATATAAGT 58.691 33.333 0.00 0.00 0.00 2.24
47 48 8.592998 CACACACTCCGTTTCTAAATATAAGTC 58.407 37.037 0.00 0.00 0.00 3.01
48 49 8.529476 ACACACTCCGTTTCTAAATATAAGTCT 58.471 33.333 0.00 0.00 0.00 3.24
49 50 9.367444 CACACTCCGTTTCTAAATATAAGTCTT 57.633 33.333 0.00 0.00 0.00 3.01
50 51 9.939802 ACACTCCGTTTCTAAATATAAGTCTTT 57.060 29.630 0.00 0.00 0.00 2.52
79 80 8.295288 AGAGATTTTAATATGACCTACGTACGG 58.705 37.037 21.06 4.19 0.00 4.02
80 81 8.169977 AGATTTTAATATGACCTACGTACGGA 57.830 34.615 21.06 10.81 0.00 4.69
81 82 8.800332 AGATTTTAATATGACCTACGTACGGAT 58.200 33.333 21.06 1.34 0.00 4.18
82 83 8.752766 ATTTTAATATGACCTACGTACGGATG 57.247 34.615 21.06 11.04 0.00 3.51
83 84 6.882610 TTAATATGACCTACGTACGGATGT 57.117 37.500 21.06 14.72 0.00 3.06
84 85 7.977789 TTAATATGACCTACGTACGGATGTA 57.022 36.000 21.06 0.00 0.00 2.29
85 86 8.565896 TTAATATGACCTACGTACGGATGTAT 57.434 34.615 21.06 10.66 32.11 2.29
86 87 9.665719 TTAATATGACCTACGTACGGATGTATA 57.334 33.333 21.06 12.26 32.11 1.47
87 88 8.743085 AATATGACCTACGTACGGATGTATAT 57.257 34.615 21.06 13.77 32.11 0.86
88 89 9.836864 AATATGACCTACGTACGGATGTATATA 57.163 33.333 21.06 15.30 32.11 0.86
89 90 7.783090 ATGACCTACGTACGGATGTATATAG 57.217 40.000 21.06 9.05 32.11 1.31
90 91 6.935167 TGACCTACGTACGGATGTATATAGA 58.065 40.000 21.06 0.00 32.11 1.98
91 92 6.813649 TGACCTACGTACGGATGTATATAGAC 59.186 42.308 21.06 1.09 32.11 2.59
92 93 6.701340 ACCTACGTACGGATGTATATAGACA 58.299 40.000 21.06 2.07 32.11 3.41
93 94 7.334090 ACCTACGTACGGATGTATATAGACAT 58.666 38.462 21.06 12.70 42.82 3.06
94 95 8.478066 ACCTACGTACGGATGTATATAGACATA 58.522 37.037 21.06 0.00 40.18 2.29
95 96 9.486497 CCTACGTACGGATGTATATAGACATAT 57.514 37.037 21.06 5.08 40.18 1.78
125 126 9.899226 AAAGTGTAGATTTACTGATTTTGCTTC 57.101 29.630 0.00 0.00 0.00 3.86
126 127 8.621532 AGTGTAGATTTACTGATTTTGCTTCA 57.378 30.769 0.00 0.00 0.00 3.02
127 128 9.236006 AGTGTAGATTTACTGATTTTGCTTCAT 57.764 29.630 0.00 0.00 0.00 2.57
187 188 7.929941 ATTTAGGACCTGTTCAAAATCTCTC 57.070 36.000 3.53 0.00 0.00 3.20
188 189 4.293662 AGGACCTGTTCAAAATCTCTCC 57.706 45.455 0.00 0.00 0.00 3.71
189 190 3.652869 AGGACCTGTTCAAAATCTCTCCA 59.347 43.478 0.00 0.00 0.00 3.86
190 191 3.753797 GGACCTGTTCAAAATCTCTCCAC 59.246 47.826 0.00 0.00 0.00 4.02
191 192 4.505742 GGACCTGTTCAAAATCTCTCCACT 60.506 45.833 0.00 0.00 0.00 4.00
192 193 4.646572 ACCTGTTCAAAATCTCTCCACTC 58.353 43.478 0.00 0.00 0.00 3.51
193 194 4.006319 CCTGTTCAAAATCTCTCCACTCC 58.994 47.826 0.00 0.00 0.00 3.85
194 195 4.505566 CCTGTTCAAAATCTCTCCACTCCA 60.506 45.833 0.00 0.00 0.00 3.86
195 196 4.389374 TGTTCAAAATCTCTCCACTCCAC 58.611 43.478 0.00 0.00 0.00 4.02
196 197 3.319137 TCAAAATCTCTCCACTCCACG 57.681 47.619 0.00 0.00 0.00 4.94
197 198 2.897326 TCAAAATCTCTCCACTCCACGA 59.103 45.455 0.00 0.00 0.00 4.35
198 199 3.323691 TCAAAATCTCTCCACTCCACGAA 59.676 43.478 0.00 0.00 0.00 3.85
199 200 3.601443 AAATCTCTCCACTCCACGAAG 57.399 47.619 0.00 0.00 0.00 3.79
201 202 1.996798 TCTCTCCACTCCACGAAGTT 58.003 50.000 0.00 0.00 41.61 2.66
202 203 1.613925 TCTCTCCACTCCACGAAGTTG 59.386 52.381 0.00 0.00 41.61 3.16
203 204 0.679505 TCTCCACTCCACGAAGTTGG 59.320 55.000 0.00 0.00 41.61 3.77
204 205 0.393077 CTCCACTCCACGAAGTTGGT 59.607 55.000 0.00 0.00 41.61 3.67
205 206 0.105964 TCCACTCCACGAAGTTGGTG 59.894 55.000 10.79 10.79 41.61 4.17
206 207 0.105964 CCACTCCACGAAGTTGGTGA 59.894 55.000 18.49 5.09 41.61 4.02
207 208 1.474320 CCACTCCACGAAGTTGGTGAA 60.474 52.381 18.49 0.00 41.61 3.18
208 209 1.867233 CACTCCACGAAGTTGGTGAAG 59.133 52.381 18.49 10.96 41.61 3.02
209 210 0.868406 CTCCACGAAGTTGGTGAAGC 59.132 55.000 18.49 0.00 41.61 3.86
210 211 0.468226 TCCACGAAGTTGGTGAAGCT 59.532 50.000 18.49 0.00 41.61 3.74
211 212 0.868406 CCACGAAGTTGGTGAAGCTC 59.132 55.000 18.49 0.00 41.61 4.09
212 213 0.508641 CACGAAGTTGGTGAAGCTCG 59.491 55.000 12.25 0.00 41.61 5.03
213 214 0.387929 ACGAAGTTGGTGAAGCTCGA 59.612 50.000 0.00 0.00 37.78 4.04
214 215 1.000955 ACGAAGTTGGTGAAGCTCGAT 59.999 47.619 0.00 0.00 37.78 3.59
215 216 2.069273 CGAAGTTGGTGAAGCTCGATT 58.931 47.619 0.00 0.00 0.00 3.34
216 217 2.480419 CGAAGTTGGTGAAGCTCGATTT 59.520 45.455 0.00 0.00 0.00 2.17
217 218 3.058914 CGAAGTTGGTGAAGCTCGATTTT 60.059 43.478 0.00 0.00 0.00 1.82
218 219 3.904136 AGTTGGTGAAGCTCGATTTTG 57.096 42.857 0.00 0.00 0.00 2.44
219 220 3.476552 AGTTGGTGAAGCTCGATTTTGA 58.523 40.909 0.00 0.00 0.00 2.69
220 221 3.251004 AGTTGGTGAAGCTCGATTTTGAC 59.749 43.478 0.00 0.00 0.00 3.18
221 222 2.844946 TGGTGAAGCTCGATTTTGACA 58.155 42.857 0.00 0.00 0.00 3.58
222 223 2.807967 TGGTGAAGCTCGATTTTGACAG 59.192 45.455 0.00 0.00 0.00 3.51
223 224 2.413371 GGTGAAGCTCGATTTTGACAGC 60.413 50.000 0.00 0.00 0.00 4.40
224 225 2.481952 GTGAAGCTCGATTTTGACAGCT 59.518 45.455 0.00 0.00 44.28 4.24
225 226 2.738846 TGAAGCTCGATTTTGACAGCTC 59.261 45.455 0.00 0.00 41.48 4.09
226 227 2.758736 AGCTCGATTTTGACAGCTCT 57.241 45.000 0.00 0.00 37.72 4.09
227 228 3.876274 AGCTCGATTTTGACAGCTCTA 57.124 42.857 0.00 0.00 37.72 2.43
228 229 4.399004 AGCTCGATTTTGACAGCTCTAT 57.601 40.909 0.00 0.00 37.72 1.98
229 230 4.367450 AGCTCGATTTTGACAGCTCTATC 58.633 43.478 0.00 0.00 37.72 2.08
230 231 4.115516 GCTCGATTTTGACAGCTCTATCA 58.884 43.478 0.00 0.00 0.00 2.15
231 232 4.568359 GCTCGATTTTGACAGCTCTATCAA 59.432 41.667 1.32 1.32 33.03 2.57
232 233 5.276773 GCTCGATTTTGACAGCTCTATCAAG 60.277 44.000 5.10 0.00 36.26 3.02
233 234 5.111989 TCGATTTTGACAGCTCTATCAAGG 58.888 41.667 5.10 0.00 36.26 3.61
234 235 4.872691 CGATTTTGACAGCTCTATCAAGGT 59.127 41.667 5.10 0.05 36.26 3.50
236 237 4.890158 TTTGACAGCTCTATCAAGGTGA 57.110 40.909 9.81 0.00 45.46 4.02
237 238 4.462508 TTGACAGCTCTATCAAGGTGAG 57.537 45.455 9.81 0.00 45.46 3.51
242 243 3.533606 GCTCTATCAAGGTGAGCTGAA 57.466 47.619 0.00 0.00 46.69 3.02
243 244 3.456280 GCTCTATCAAGGTGAGCTGAAG 58.544 50.000 0.00 0.00 46.69 3.02
244 245 3.118811 GCTCTATCAAGGTGAGCTGAAGT 60.119 47.826 0.00 0.00 46.69 3.01
245 246 4.681744 CTCTATCAAGGTGAGCTGAAGTC 58.318 47.826 0.00 0.00 0.00 3.01
246 247 4.348486 TCTATCAAGGTGAGCTGAAGTCT 58.652 43.478 0.00 0.00 0.00 3.24
247 248 2.827800 TCAAGGTGAGCTGAAGTCTG 57.172 50.000 0.00 0.00 0.00 3.51
248 249 1.345741 TCAAGGTGAGCTGAAGTCTGG 59.654 52.381 0.00 0.00 0.00 3.86
249 250 1.071385 CAAGGTGAGCTGAAGTCTGGT 59.929 52.381 0.00 0.00 0.00 4.00
250 251 0.972883 AGGTGAGCTGAAGTCTGGTC 59.027 55.000 9.64 9.64 40.97 4.02
251 252 0.972883 GGTGAGCTGAAGTCTGGTCT 59.027 55.000 15.48 0.00 41.10 3.85
252 253 1.337635 GGTGAGCTGAAGTCTGGTCTG 60.338 57.143 15.48 0.00 41.10 3.51
253 254 0.319728 TGAGCTGAAGTCTGGTCTGC 59.680 55.000 15.48 0.00 41.10 4.26
254 255 2.757313 AGCTGAAGTCTGGTCTGCT 58.243 52.632 1.22 1.22 43.15 4.24
255 256 0.607620 AGCTGAAGTCTGGTCTGCTC 59.392 55.000 1.22 0.00 44.19 4.26
256 257 0.390998 GCTGAAGTCTGGTCTGCTCC 60.391 60.000 0.00 0.00 37.09 4.70
257 258 0.108898 CTGAAGTCTGGTCTGCTCCG 60.109 60.000 0.00 0.00 0.00 4.63
258 259 0.539669 TGAAGTCTGGTCTGCTCCGA 60.540 55.000 0.00 0.00 0.00 4.55
259 260 0.172352 GAAGTCTGGTCTGCTCCGAG 59.828 60.000 0.00 0.00 0.00 4.63
260 261 0.251386 AAGTCTGGTCTGCTCCGAGA 60.251 55.000 0.00 0.00 0.00 4.04
261 262 0.679640 AGTCTGGTCTGCTCCGAGAG 60.680 60.000 0.00 0.00 0.00 3.20
274 275 3.082165 CGAGAGCGGAGTTAGAGGA 57.918 57.895 0.00 0.00 0.00 3.71
275 276 0.941542 CGAGAGCGGAGTTAGAGGAG 59.058 60.000 0.00 0.00 0.00 3.69
276 277 1.744456 CGAGAGCGGAGTTAGAGGAGT 60.744 57.143 0.00 0.00 0.00 3.85
277 278 1.673920 GAGAGCGGAGTTAGAGGAGTG 59.326 57.143 0.00 0.00 0.00 3.51
278 279 1.282447 AGAGCGGAGTTAGAGGAGTGA 59.718 52.381 0.00 0.00 0.00 3.41
279 280 2.093106 GAGCGGAGTTAGAGGAGTGAA 58.907 52.381 0.00 0.00 0.00 3.18
280 281 2.096248 AGCGGAGTTAGAGGAGTGAAG 58.904 52.381 0.00 0.00 0.00 3.02
281 282 2.093106 GCGGAGTTAGAGGAGTGAAGA 58.907 52.381 0.00 0.00 0.00 2.87
282 283 2.098443 GCGGAGTTAGAGGAGTGAAGAG 59.902 54.545 0.00 0.00 0.00 2.85
283 284 3.611970 CGGAGTTAGAGGAGTGAAGAGA 58.388 50.000 0.00 0.00 0.00 3.10
284 285 4.011023 CGGAGTTAGAGGAGTGAAGAGAA 58.989 47.826 0.00 0.00 0.00 2.87
285 286 4.459685 CGGAGTTAGAGGAGTGAAGAGAAA 59.540 45.833 0.00 0.00 0.00 2.52
286 287 5.620429 CGGAGTTAGAGGAGTGAAGAGAAAC 60.620 48.000 0.00 0.00 0.00 2.78
287 288 5.336929 GGAGTTAGAGGAGTGAAGAGAAACC 60.337 48.000 0.00 0.00 0.00 3.27
288 289 4.218852 AGTTAGAGGAGTGAAGAGAAACCG 59.781 45.833 0.00 0.00 0.00 4.44
289 290 2.877866 AGAGGAGTGAAGAGAAACCGA 58.122 47.619 0.00 0.00 0.00 4.69
290 291 3.231818 AGAGGAGTGAAGAGAAACCGAA 58.768 45.455 0.00 0.00 0.00 4.30
291 292 3.835395 AGAGGAGTGAAGAGAAACCGAAT 59.165 43.478 0.00 0.00 0.00 3.34
292 293 3.929610 GAGGAGTGAAGAGAAACCGAATG 59.070 47.826 0.00 0.00 0.00 2.67
293 294 2.416893 GGAGTGAAGAGAAACCGAATGC 59.583 50.000 0.00 0.00 0.00 3.56
294 295 3.330267 GAGTGAAGAGAAACCGAATGCT 58.670 45.455 0.00 0.00 0.00 3.79
295 296 3.330267 AGTGAAGAGAAACCGAATGCTC 58.670 45.455 0.00 0.00 0.00 4.26
296 297 2.416893 GTGAAGAGAAACCGAATGCTCC 59.583 50.000 0.00 0.00 0.00 4.70
297 298 2.010497 GAAGAGAAACCGAATGCTCCC 58.990 52.381 0.00 0.00 0.00 4.30
298 299 1.280457 AGAGAAACCGAATGCTCCCT 58.720 50.000 0.00 0.00 0.00 4.20
299 300 1.630878 AGAGAAACCGAATGCTCCCTT 59.369 47.619 0.00 0.00 0.00 3.95
300 301 2.838202 AGAGAAACCGAATGCTCCCTTA 59.162 45.455 0.00 0.00 0.00 2.69
301 302 3.118592 AGAGAAACCGAATGCTCCCTTAG 60.119 47.826 0.00 0.00 0.00 2.18
302 303 2.092914 AGAAACCGAATGCTCCCTTAGG 60.093 50.000 0.00 0.00 0.00 2.69
303 304 1.580059 AACCGAATGCTCCCTTAGGA 58.420 50.000 0.00 0.00 41.08 2.94
304 305 1.580059 ACCGAATGCTCCCTTAGGAA 58.420 50.000 0.00 0.00 43.40 3.36
305 306 2.127708 ACCGAATGCTCCCTTAGGAAT 58.872 47.619 0.00 0.00 43.40 3.01
306 307 2.158755 ACCGAATGCTCCCTTAGGAATG 60.159 50.000 0.00 0.00 43.40 2.67
307 308 2.498167 CGAATGCTCCCTTAGGAATGG 58.502 52.381 0.00 0.00 43.40 3.16
308 309 2.104792 CGAATGCTCCCTTAGGAATGGA 59.895 50.000 0.00 0.00 43.40 3.41
309 310 3.749226 GAATGCTCCCTTAGGAATGGAG 58.251 50.000 0.00 6.26 46.87 3.86
310 311 1.511613 TGCTCCCTTAGGAATGGAGG 58.488 55.000 0.00 0.00 44.77 4.30
311 312 1.274416 TGCTCCCTTAGGAATGGAGGT 60.274 52.381 0.00 0.00 44.77 3.85
312 313 2.022428 TGCTCCCTTAGGAATGGAGGTA 60.022 50.000 0.00 0.00 44.77 3.08
313 314 3.252351 GCTCCCTTAGGAATGGAGGTAT 58.748 50.000 0.00 0.00 44.77 2.73
314 315 3.262151 GCTCCCTTAGGAATGGAGGTATC 59.738 52.174 0.00 0.00 44.77 2.24
315 316 4.493618 CTCCCTTAGGAATGGAGGTATCA 58.506 47.826 0.00 0.00 43.40 2.15
316 317 4.903149 TCCCTTAGGAATGGAGGTATCAA 58.097 43.478 0.00 0.00 40.08 2.57
317 318 5.293643 TCCCTTAGGAATGGAGGTATCAAA 58.706 41.667 0.00 0.00 40.08 2.69
318 319 5.734140 TCCCTTAGGAATGGAGGTATCAAAA 59.266 40.000 0.00 0.00 40.08 2.44
319 320 6.218730 TCCCTTAGGAATGGAGGTATCAAAAA 59.781 38.462 0.00 0.00 40.08 1.94
320 321 6.321435 CCCTTAGGAATGGAGGTATCAAAAAC 59.679 42.308 0.00 0.00 33.47 2.43
321 322 6.038271 CCTTAGGAATGGAGGTATCAAAAACG 59.962 42.308 0.00 0.00 0.00 3.60
322 323 4.270008 AGGAATGGAGGTATCAAAAACGG 58.730 43.478 0.00 0.00 0.00 4.44
323 324 4.018779 AGGAATGGAGGTATCAAAAACGGA 60.019 41.667 0.00 0.00 0.00 4.69
324 325 4.703093 GGAATGGAGGTATCAAAAACGGAA 59.297 41.667 0.00 0.00 0.00 4.30
325 326 5.163652 GGAATGGAGGTATCAAAAACGGAAG 60.164 44.000 0.00 0.00 0.00 3.46
337 338 2.222592 ACGGAAGTTTCAAGCGTCG 58.777 52.632 0.00 0.00 46.40 5.12
338 339 1.154654 CGGAAGTTTCAAGCGTCGC 60.155 57.895 9.80 9.80 0.00 5.19
339 340 1.206831 GGAAGTTTCAAGCGTCGCC 59.793 57.895 14.86 0.00 0.00 5.54
340 341 1.503818 GGAAGTTTCAAGCGTCGCCA 61.504 55.000 14.86 0.00 0.00 5.69
341 342 0.517316 GAAGTTTCAAGCGTCGCCAT 59.483 50.000 14.86 0.00 0.00 4.40
342 343 0.951558 AAGTTTCAAGCGTCGCCATT 59.048 45.000 14.86 0.00 0.00 3.16
343 344 0.951558 AGTTTCAAGCGTCGCCATTT 59.048 45.000 14.86 0.00 0.00 2.32
344 345 1.052287 GTTTCAAGCGTCGCCATTTG 58.948 50.000 14.86 12.30 0.00 2.32
345 346 0.947960 TTTCAAGCGTCGCCATTTGA 59.052 45.000 14.86 14.53 0.00 2.69
346 347 0.947960 TTCAAGCGTCGCCATTTGAA 59.052 45.000 22.04 22.04 37.25 2.69
347 348 0.516877 TCAAGCGTCGCCATTTGAAG 59.483 50.000 14.86 0.00 0.00 3.02
348 349 1.067199 CAAGCGTCGCCATTTGAAGC 61.067 55.000 14.86 0.00 40.49 3.86
349 350 1.672356 AGCGTCGCCATTTGAAGCT 60.672 52.632 14.86 0.00 44.51 3.74
350 351 1.226128 GCGTCGCCATTTGAAGCTC 60.226 57.895 5.75 0.00 37.76 4.09
351 352 1.425428 CGTCGCCATTTGAAGCTCC 59.575 57.895 0.00 0.00 0.00 4.70
352 353 1.021390 CGTCGCCATTTGAAGCTCCT 61.021 55.000 0.00 0.00 0.00 3.69
353 354 0.449388 GTCGCCATTTGAAGCTCCTG 59.551 55.000 0.00 0.00 0.00 3.86
354 355 0.324614 TCGCCATTTGAAGCTCCTGA 59.675 50.000 0.00 0.00 0.00 3.86
355 356 1.167851 CGCCATTTGAAGCTCCTGAA 58.832 50.000 0.00 0.00 0.00 3.02
356 357 1.135575 CGCCATTTGAAGCTCCTGAAC 60.136 52.381 0.00 0.00 0.00 3.18
357 358 2.165998 GCCATTTGAAGCTCCTGAACT 58.834 47.619 0.00 0.00 0.00 3.01
358 359 2.094854 GCCATTTGAAGCTCCTGAACTG 60.095 50.000 0.00 0.00 0.00 3.16
359 360 3.152341 CCATTTGAAGCTCCTGAACTGT 58.848 45.455 0.00 0.00 0.00 3.55
360 361 3.190118 CCATTTGAAGCTCCTGAACTGTC 59.810 47.826 0.00 0.00 0.00 3.51
361 362 3.845781 TTTGAAGCTCCTGAACTGTCT 57.154 42.857 0.00 0.00 0.00 3.41
362 363 3.845781 TTGAAGCTCCTGAACTGTCTT 57.154 42.857 0.00 0.00 0.00 3.01
363 364 3.393089 TGAAGCTCCTGAACTGTCTTC 57.607 47.619 0.00 0.00 0.00 2.87
364 365 2.700371 TGAAGCTCCTGAACTGTCTTCA 59.300 45.455 0.00 0.00 37.97 3.02
365 366 2.829741 AGCTCCTGAACTGTCTTCAC 57.170 50.000 0.00 0.00 0.00 3.18
366 367 1.000283 AGCTCCTGAACTGTCTTCACG 60.000 52.381 0.00 0.00 0.00 4.35
367 368 1.269831 GCTCCTGAACTGTCTTCACGT 60.270 52.381 0.00 0.00 0.00 4.49
368 369 2.803492 GCTCCTGAACTGTCTTCACGTT 60.803 50.000 0.00 0.00 0.00 3.99
369 370 3.053455 CTCCTGAACTGTCTTCACGTTC 58.947 50.000 0.00 0.00 37.97 3.95
370 371 2.135933 CCTGAACTGTCTTCACGTTCC 58.864 52.381 0.00 0.00 36.97 3.62
371 372 2.483013 CCTGAACTGTCTTCACGTTCCA 60.483 50.000 0.00 0.00 36.97 3.53
372 373 3.194861 CTGAACTGTCTTCACGTTCCAA 58.805 45.455 0.00 0.00 36.97 3.53
373 374 3.194861 TGAACTGTCTTCACGTTCCAAG 58.805 45.455 0.00 0.00 36.97 3.61
374 375 2.981859 ACTGTCTTCACGTTCCAAGT 57.018 45.000 0.00 0.00 0.00 3.16
375 376 2.822764 ACTGTCTTCACGTTCCAAGTC 58.177 47.619 0.00 0.00 0.00 3.01
376 377 2.431057 ACTGTCTTCACGTTCCAAGTCT 59.569 45.455 0.00 0.00 0.00 3.24
377 378 2.797156 CTGTCTTCACGTTCCAAGTCTG 59.203 50.000 0.00 0.00 0.00 3.51
378 379 1.527311 GTCTTCACGTTCCAAGTCTGC 59.473 52.381 0.00 0.00 0.00 4.26
379 380 1.138069 TCTTCACGTTCCAAGTCTGCA 59.862 47.619 0.00 0.00 0.00 4.41
380 381 1.939934 CTTCACGTTCCAAGTCTGCAA 59.060 47.619 0.00 0.00 0.00 4.08
381 382 2.031258 TCACGTTCCAAGTCTGCAAA 57.969 45.000 0.00 0.00 0.00 3.68
382 383 1.668751 TCACGTTCCAAGTCTGCAAAC 59.331 47.619 0.00 0.00 0.00 2.93
383 384 1.400142 CACGTTCCAAGTCTGCAAACA 59.600 47.619 0.00 0.00 0.00 2.83
384 385 2.088423 ACGTTCCAAGTCTGCAAACAA 58.912 42.857 0.00 0.00 0.00 2.83
385 386 2.490115 ACGTTCCAAGTCTGCAAACAAA 59.510 40.909 0.00 0.00 0.00 2.83
386 387 2.851824 CGTTCCAAGTCTGCAAACAAAC 59.148 45.455 0.00 0.00 0.00 2.93
387 388 3.671971 CGTTCCAAGTCTGCAAACAAACA 60.672 43.478 0.00 0.00 0.00 2.83
388 389 4.241681 GTTCCAAGTCTGCAAACAAACAA 58.758 39.130 0.00 0.00 0.00 2.83
389 390 4.527509 TCCAAGTCTGCAAACAAACAAA 57.472 36.364 0.00 0.00 0.00 2.83
390 391 4.493547 TCCAAGTCTGCAAACAAACAAAG 58.506 39.130 0.00 0.00 0.00 2.77
391 392 3.618150 CCAAGTCTGCAAACAAACAAAGG 59.382 43.478 0.00 0.00 0.00 3.11
392 393 2.892374 AGTCTGCAAACAAACAAAGGC 58.108 42.857 0.00 0.00 0.00 4.35
393 394 2.497273 AGTCTGCAAACAAACAAAGGCT 59.503 40.909 0.00 0.00 0.00 4.58
394 395 2.604462 GTCTGCAAACAAACAAAGGCTG 59.396 45.455 0.00 0.00 0.00 4.85
395 396 1.935199 CTGCAAACAAACAAAGGCTGG 59.065 47.619 0.00 0.00 0.00 4.85
396 397 1.277557 TGCAAACAAACAAAGGCTGGT 59.722 42.857 0.00 0.00 0.00 4.00
397 398 2.497675 TGCAAACAAACAAAGGCTGGTA 59.502 40.909 0.00 0.00 0.00 3.25
398 399 2.863740 GCAAACAAACAAAGGCTGGTAC 59.136 45.455 0.00 0.00 0.00 3.34
399 400 3.430236 GCAAACAAACAAAGGCTGGTACT 60.430 43.478 0.00 0.00 0.00 2.73
400 401 4.359706 CAAACAAACAAAGGCTGGTACTC 58.640 43.478 0.00 0.00 0.00 2.59
401 402 3.290948 ACAAACAAAGGCTGGTACTCA 57.709 42.857 0.00 0.00 0.00 3.41
402 403 3.832527 ACAAACAAAGGCTGGTACTCAT 58.167 40.909 0.00 0.00 0.00 2.90
403 404 4.215109 ACAAACAAAGGCTGGTACTCATT 58.785 39.130 0.00 0.00 0.00 2.57
404 405 4.037923 ACAAACAAAGGCTGGTACTCATTG 59.962 41.667 0.00 0.00 0.00 2.82
405 406 3.508845 ACAAAGGCTGGTACTCATTGT 57.491 42.857 0.00 0.00 0.00 2.71
406 407 3.412386 ACAAAGGCTGGTACTCATTGTC 58.588 45.455 0.00 0.00 0.00 3.18
407 408 3.181445 ACAAAGGCTGGTACTCATTGTCA 60.181 43.478 0.00 0.00 0.00 3.58
408 409 4.012374 CAAAGGCTGGTACTCATTGTCAT 58.988 43.478 0.00 0.00 0.00 3.06
409 410 3.550437 AGGCTGGTACTCATTGTCATC 57.450 47.619 0.00 0.00 0.00 2.92
410 411 2.159043 AGGCTGGTACTCATTGTCATCG 60.159 50.000 0.00 0.00 0.00 3.84
411 412 2.205074 GCTGGTACTCATTGTCATCGG 58.795 52.381 0.00 0.00 0.00 4.18
412 413 2.826428 CTGGTACTCATTGTCATCGGG 58.174 52.381 0.00 0.00 0.00 5.14
413 414 2.168521 CTGGTACTCATTGTCATCGGGT 59.831 50.000 0.00 0.00 0.00 5.28
414 415 2.569853 TGGTACTCATTGTCATCGGGTT 59.430 45.455 0.00 0.00 0.00 4.11
415 416 3.195661 GGTACTCATTGTCATCGGGTTC 58.804 50.000 0.00 0.00 0.00 3.62
416 417 2.403252 ACTCATTGTCATCGGGTTCC 57.597 50.000 0.00 0.00 0.00 3.62
417 418 1.628340 ACTCATTGTCATCGGGTTCCA 59.372 47.619 0.00 0.00 0.00 3.53
418 419 2.283298 CTCATTGTCATCGGGTTCCAG 58.717 52.381 0.00 0.00 0.00 3.86
419 420 1.905894 TCATTGTCATCGGGTTCCAGA 59.094 47.619 0.00 0.00 0.00 3.86
420 421 2.093500 TCATTGTCATCGGGTTCCAGAG 60.093 50.000 0.00 0.00 0.00 3.35
421 422 1.639722 TTGTCATCGGGTTCCAGAGA 58.360 50.000 0.00 0.00 0.00 3.10
422 423 1.639722 TGTCATCGGGTTCCAGAGAA 58.360 50.000 0.00 0.00 0.00 2.87
423 424 1.974957 TGTCATCGGGTTCCAGAGAAA 59.025 47.619 0.00 0.00 32.58 2.52
424 425 2.370519 TGTCATCGGGTTCCAGAGAAAA 59.629 45.455 0.00 0.00 32.58 2.29
425 426 3.181449 TGTCATCGGGTTCCAGAGAAAAA 60.181 43.478 0.00 0.00 32.58 1.94
441 442 2.934083 AAAAAGTGCCCTCGAGAGC 58.066 52.632 15.71 14.10 0.00 4.09
442 443 0.108585 AAAAAGTGCCCTCGAGAGCA 59.891 50.000 18.54 18.54 36.44 4.26
443 444 0.321122 AAAAGTGCCCTCGAGAGCAG 60.321 55.000 22.97 4.65 40.28 4.24
444 445 2.794820 AAAGTGCCCTCGAGAGCAGC 62.795 60.000 22.97 16.21 40.28 5.25
445 446 4.828925 GTGCCCTCGAGAGCAGCC 62.829 72.222 22.97 7.87 40.28 4.85
447 448 4.527583 GCCCTCGAGAGCAGCCTG 62.528 72.222 14.74 0.00 0.00 4.85
448 449 4.527583 CCCTCGAGAGCAGCCTGC 62.528 72.222 15.71 9.13 45.46 4.85
632 633 3.330720 CCACTCCCTGGACCCACC 61.331 72.222 0.00 0.00 43.95 4.61
703 705 2.028337 GAATCTCGGAGCGGAGGC 59.972 66.667 0.00 0.00 40.37 4.70
706 708 3.723097 ATCTCGGAGCGGAGGCAGA 62.723 63.158 0.00 0.00 43.41 4.26
856 866 1.745264 CAGAAGGATCTCTCCCGGC 59.255 63.158 0.00 0.00 43.21 6.13
902 913 1.860423 CTCGAAGCGCACGCATTTG 60.860 57.895 18.24 11.84 44.88 2.32
1041 1052 3.964221 GACGATGGACGCGCTGACA 62.964 63.158 5.73 0.00 46.94 3.58
1260 1271 0.511653 GACGTGGTTCGCTTTTCTCC 59.488 55.000 0.00 0.00 44.19 3.71
1261 1272 0.883370 ACGTGGTTCGCTTTTCTCCC 60.883 55.000 0.00 0.00 44.19 4.30
1262 1273 1.574702 CGTGGTTCGCTTTTCTCCCC 61.575 60.000 0.00 0.00 0.00 4.81
1352 1369 1.907739 CGAAGCCATCCTCTCCCAA 59.092 57.895 0.00 0.00 0.00 4.12
1394 1411 2.047655 GAACATCGACCCACCGCA 60.048 61.111 0.00 0.00 0.00 5.69
1423 1442 8.831715 AATTTCAAACATTTTACCTGGATGTC 57.168 30.769 0.00 0.00 33.16 3.06
1494 1516 2.627863 TTCGGGAATTGAAATGTGCG 57.372 45.000 0.00 0.00 0.00 5.34
1495 1517 1.529226 TCGGGAATTGAAATGTGCGT 58.471 45.000 0.00 0.00 0.00 5.24
1496 1518 1.883275 TCGGGAATTGAAATGTGCGTT 59.117 42.857 0.00 0.00 0.00 4.84
1498 1520 3.126171 TCGGGAATTGAAATGTGCGTTAG 59.874 43.478 0.00 0.00 0.00 2.34
1584 1615 9.466497 ACTACCATGTTAAATTCAATCATCACT 57.534 29.630 0.00 0.00 0.00 3.41
1725 1929 3.763897 AGGTCATTAATTTGGGTCACTGC 59.236 43.478 0.00 0.00 0.00 4.40
1819 2024 3.632333 TCTCGCAGAAAGAGAGGGAATA 58.368 45.455 0.00 0.00 43.50 1.75
2093 2299 4.370364 AGCGAAGTCTTCTCTGAAGATC 57.630 45.455 12.32 6.97 0.00 2.75
2300 2507 0.676466 TGCGGCCATCAAAAGACGAT 60.676 50.000 2.24 0.00 0.00 3.73
2611 2818 1.550524 TCTTCAGAGAATCCCGTGGTG 59.449 52.381 0.00 0.00 33.66 4.17
2794 3001 6.183360 TGTGTGCTAGTTTGGACTTAAACAAG 60.183 38.462 0.00 0.00 41.76 3.16
2883 3090 2.478539 GCGATCAGATTTTTGAGGGTGC 60.479 50.000 0.00 0.00 0.00 5.01
2895 3102 2.582052 TGAGGGTGCCAACTTTAACAG 58.418 47.619 0.00 0.00 0.00 3.16
3035 3242 4.451096 ACGAAGTAATGCGTGAACTTCAAT 59.549 37.500 23.75 14.17 46.06 2.57
3074 3281 7.310858 GGGAGTAATTTACTGTACCTTCCTTCA 60.311 40.741 13.69 0.00 39.59 3.02
3230 3437 3.664107 TCAGATTGAGGTGGTTTTCGAG 58.336 45.455 0.00 0.00 0.00 4.04
3326 3533 0.740868 TCGCTGATTTTGAGGAGGCG 60.741 55.000 0.00 0.00 42.00 5.52
3466 3673 8.879342 AGTAGTCAATTTATGCATCTGTAGAC 57.121 34.615 0.19 7.89 0.00 2.59
3476 3683 6.932356 ATGCATCTGTAGACCAGTAATTTG 57.068 37.500 0.00 0.00 42.19 2.32
3477 3684 5.185454 TGCATCTGTAGACCAGTAATTTGG 58.815 41.667 0.00 0.00 42.19 3.28
3485 3692 4.589908 AGACCAGTAATTTGGCGAAATCT 58.410 39.130 7.17 0.00 42.18 2.40
3500 3707 5.119898 GGCGAAATCTGAGTAAGATATGCTG 59.880 44.000 7.91 0.00 45.37 4.41
3615 3823 4.167268 CTGTCGCTAGTGGTCTTAGAAAC 58.833 47.826 2.90 0.00 0.00 2.78
3652 3860 0.893727 TCGTAGCAGGCAGTCTGTCA 60.894 55.000 7.30 0.00 45.08 3.58
3674 3882 9.639601 TGTCAATAACTATACAGAGTTGTGAAG 57.360 33.333 0.00 0.00 39.96 3.02
3717 3927 5.057149 TCACTTTCTACTGTCTTTGGCTTC 58.943 41.667 0.00 0.00 0.00 3.86
3824 4042 7.018826 TCAAATAGCACGCTAACAAATGTTAC 58.981 34.615 2.32 0.38 39.31 2.50
3851 4069 5.299279 TCATATGAGCAGTTATCAGTCGACA 59.701 40.000 19.50 0.00 0.00 4.35
4119 4337 4.624882 GCTCACTTAGTGATCTCTTGTGTG 59.375 45.833 15.91 19.04 41.94 3.82
4408 4626 9.213777 TGGAGAGTTACCTGTTTAAGATATCAT 57.786 33.333 5.32 0.00 0.00 2.45
4523 4741 2.133281 TACCGTCGAGGAGGAATTCA 57.867 50.000 6.70 0.00 45.00 2.57
4552 4770 1.190643 AGAGTCTGGCCAGAACTAGC 58.809 55.000 36.66 23.22 39.48 3.42
4764 4982 3.393089 TGACTCTCTCCAGTTTTCTGC 57.607 47.619 0.00 0.00 45.76 4.26
4785 5003 7.573710 TCTGCTCTATATCCTCTCTATTCTCC 58.426 42.308 0.00 0.00 0.00 3.71
4793 5011 2.703007 CCTCTCTATTCTCCCAACCCTG 59.297 54.545 0.00 0.00 0.00 4.45
4852 5070 2.297701 GCTGGAATCGGCCTGAAAATA 58.702 47.619 0.00 0.00 39.31 1.40
4999 5217 2.759191 ACTCTAGTACACACGTCGTCA 58.241 47.619 0.00 0.00 0.00 4.35
5189 5407 4.574421 TCGTGCTGTATTTACATGATTGGG 59.426 41.667 0.00 0.00 35.36 4.12
5197 5415 8.339344 TGTATTTACATGATTGGGCATATCAG 57.661 34.615 0.00 2.98 35.63 2.90
5408 5630 6.814954 AGAAGAATCATTAGCCCTAAGACA 57.185 37.500 0.00 0.00 0.00 3.41
5551 5773 2.167900 GGTTCTGTTACCAGCCTATCGT 59.832 50.000 0.00 0.00 38.66 3.73
5626 5848 6.454795 TCTCCTATTGATTTTTGGTTGTTGC 58.545 36.000 0.00 0.00 0.00 4.17
5667 5889 8.806429 TTAGCTTCCATTGAATTGATTAGTCA 57.194 30.769 0.00 0.00 0.00 3.41
5784 6006 4.908481 TGGGCCCCAAAACTTTATACTTTT 59.092 37.500 22.27 0.00 0.00 2.27
6162 6385 1.564622 CCGTCGAAGCACACAACTG 59.435 57.895 0.00 0.00 0.00 3.16
6238 6461 3.971032 GTGACCACCACAGAAAAGAAG 57.029 47.619 0.00 0.00 45.03 2.85
6261 6484 1.534163 GGGTTTGCTGTTTCGTAGTCC 59.466 52.381 0.00 0.00 0.00 3.85
6290 6513 2.438434 ATGGCAGGCTAACACGGC 60.438 61.111 0.00 0.00 0.00 5.68
6622 6847 0.109458 CGTTTCCGATCCACGACTCA 60.109 55.000 0.00 0.00 45.77 3.41
6712 6944 9.534565 CACATAACAGCATAGACAAATACTACT 57.465 33.333 0.00 0.00 0.00 2.57
6713 6945 9.751542 ACATAACAGCATAGACAAATACTACTC 57.248 33.333 0.00 0.00 0.00 2.59
6714 6946 9.197694 CATAACAGCATAGACAAATACTACTCC 57.802 37.037 0.00 0.00 0.00 3.85
6715 6947 6.163135 ACAGCATAGACAAATACTACTCCC 57.837 41.667 0.00 0.00 0.00 4.30
6716 6948 5.900123 ACAGCATAGACAAATACTACTCCCT 59.100 40.000 0.00 0.00 0.00 4.20
6717 6949 6.041069 ACAGCATAGACAAATACTACTCCCTC 59.959 42.308 0.00 0.00 0.00 4.30
6719 6951 5.565045 GCATAGACAAATACTACTCCCTCCG 60.565 48.000 0.00 0.00 0.00 4.63
6720 6952 3.978610 AGACAAATACTACTCCCTCCGT 58.021 45.455 0.00 0.00 0.00 4.69
6722 6954 5.513233 AGACAAATACTACTCCCTCCGTAA 58.487 41.667 0.00 0.00 0.00 3.18
6723 6955 5.954150 AGACAAATACTACTCCCTCCGTAAA 59.046 40.000 0.00 0.00 0.00 2.01
6724 6956 6.096564 AGACAAATACTACTCCCTCCGTAAAG 59.903 42.308 0.00 0.00 0.00 1.85
6725 6957 5.954150 ACAAATACTACTCCCTCCGTAAAGA 59.046 40.000 0.00 0.00 0.00 2.52
6726 6958 6.438425 ACAAATACTACTCCCTCCGTAAAGAA 59.562 38.462 0.00 0.00 0.00 2.52
6727 6959 7.038799 ACAAATACTACTCCCTCCGTAAAGAAA 60.039 37.037 0.00 0.00 0.00 2.52
6728 6960 7.672122 AATACTACTCCCTCCGTAAAGAAAT 57.328 36.000 0.00 0.00 0.00 2.17
6729 6961 8.773033 AATACTACTCCCTCCGTAAAGAAATA 57.227 34.615 0.00 0.00 0.00 1.40
6730 6962 8.953223 ATACTACTCCCTCCGTAAAGAAATAT 57.047 34.615 0.00 0.00 0.00 1.28
6732 6964 8.773033 ACTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
6733 6965 8.858094 ACTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
6734 6966 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
6735 6967 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
6736 6968 7.564292 ACTCCCTCCGTAAAGAAATATAAGAGT 59.436 37.037 0.00 0.00 0.00 3.24
6737 6969 7.723324 TCCCTCCGTAAAGAAATATAAGAGTG 58.277 38.462 0.00 0.00 0.00 3.51
6738 6970 7.562454 TCCCTCCGTAAAGAAATATAAGAGTGA 59.438 37.037 0.00 0.00 0.00 3.41
6739 6971 7.868415 CCCTCCGTAAAGAAATATAAGAGTGAG 59.132 40.741 0.00 0.00 0.00 3.51
6740 6972 8.414778 CCTCCGTAAAGAAATATAAGAGTGAGT 58.585 37.037 0.00 0.00 0.00 3.41
6755 6987 6.687081 AGAGTGAGTACTACATAAGACAGC 57.313 41.667 0.00 0.00 37.25 4.40
6756 6988 5.591067 AGAGTGAGTACTACATAAGACAGCC 59.409 44.000 0.00 0.00 37.25 4.85
6763 6995 2.674796 ACATAAGACAGCCGAGTTCC 57.325 50.000 0.00 0.00 0.00 3.62
6764 6996 1.899814 ACATAAGACAGCCGAGTTCCA 59.100 47.619 0.00 0.00 0.00 3.53
6768 7000 0.036010 AGACAGCCGAGTTCCAATGG 60.036 55.000 0.00 0.00 0.00 3.16
6790 7022 4.945543 GGTAATTTAACATTCCAGACGGGT 59.054 41.667 0.00 0.00 38.11 5.28
6831 7063 2.092681 CAGACGGAACACACATTCGATG 59.907 50.000 0.00 0.00 0.00 3.84
6836 7068 3.868661 CGGAACACACATTCGATGGAATA 59.131 43.478 2.33 0.00 40.90 1.75
6840 7072 3.565482 ACACACATTCGATGGAATATGCC 59.435 43.478 8.46 0.00 40.04 4.40
6841 7073 2.807967 ACACATTCGATGGAATATGCCG 59.192 45.455 8.46 0.00 40.04 5.69
6963 7198 3.428534 CGTCAGGCCAAAGCAAAATAAAC 59.571 43.478 5.01 0.00 42.56 2.01
7010 7246 4.155462 AGCAACACTTGTCTTATGCATCAG 59.845 41.667 0.19 0.77 36.30 2.90
7043 7280 2.076100 GCCAGGCAAATAAAAACCAGC 58.924 47.619 6.55 0.00 0.00 4.85
7053 7290 5.453567 AATAAAAACCAGCAACTCTGACC 57.546 39.130 0.00 0.00 45.72 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.461458 TGATGGTGCTATGGGGTATTTCA 59.539 43.478 0.00 0.00 0.00 2.69
1 2 3.821033 GTGATGGTGCTATGGGGTATTTC 59.179 47.826 0.00 0.00 0.00 2.17
2 3 3.204158 TGTGATGGTGCTATGGGGTATTT 59.796 43.478 0.00 0.00 0.00 1.40
3 4 2.782925 TGTGATGGTGCTATGGGGTATT 59.217 45.455 0.00 0.00 0.00 1.89
4 5 2.106511 GTGTGATGGTGCTATGGGGTAT 59.893 50.000 0.00 0.00 0.00 2.73
5 6 1.488812 GTGTGATGGTGCTATGGGGTA 59.511 52.381 0.00 0.00 0.00 3.69
6 7 0.255890 GTGTGATGGTGCTATGGGGT 59.744 55.000 0.00 0.00 0.00 4.95
7 8 0.255604 TGTGTGATGGTGCTATGGGG 59.744 55.000 0.00 0.00 0.00 4.96
8 9 1.065199 AGTGTGTGATGGTGCTATGGG 60.065 52.381 0.00 0.00 0.00 4.00
9 10 2.283298 GAGTGTGTGATGGTGCTATGG 58.717 52.381 0.00 0.00 0.00 2.74
10 11 2.283298 GGAGTGTGTGATGGTGCTATG 58.717 52.381 0.00 0.00 0.00 2.23
11 12 1.134699 CGGAGTGTGTGATGGTGCTAT 60.135 52.381 0.00 0.00 0.00 2.97
12 13 0.246360 CGGAGTGTGTGATGGTGCTA 59.754 55.000 0.00 0.00 0.00 3.49
13 14 1.004560 CGGAGTGTGTGATGGTGCT 60.005 57.895 0.00 0.00 0.00 4.40
14 15 0.884704 AACGGAGTGTGTGATGGTGC 60.885 55.000 0.00 0.00 45.00 5.01
15 16 1.531149 GAAACGGAGTGTGTGATGGTG 59.469 52.381 0.00 0.00 45.00 4.17
16 17 1.416401 AGAAACGGAGTGTGTGATGGT 59.584 47.619 0.00 0.00 45.00 3.55
17 18 2.169832 AGAAACGGAGTGTGTGATGG 57.830 50.000 0.00 0.00 45.00 3.51
18 19 5.862924 ATTTAGAAACGGAGTGTGTGATG 57.137 39.130 0.00 0.00 45.00 3.07
19 20 9.314321 CTTATATTTAGAAACGGAGTGTGTGAT 57.686 33.333 0.00 0.00 45.00 3.06
20 21 8.308931 ACTTATATTTAGAAACGGAGTGTGTGA 58.691 33.333 0.00 0.00 45.00 3.58
21 22 8.475331 ACTTATATTTAGAAACGGAGTGTGTG 57.525 34.615 0.00 0.00 45.00 3.82
22 23 8.529476 AGACTTATATTTAGAAACGGAGTGTGT 58.471 33.333 0.00 0.00 45.00 3.72
23 24 8.928270 AGACTTATATTTAGAAACGGAGTGTG 57.072 34.615 0.00 0.00 45.00 3.82
24 25 9.939802 AAAGACTTATATTTAGAAACGGAGTGT 57.060 29.630 0.00 0.00 45.00 3.55
53 54 8.295288 CCGTACGTAGGTCATATTAAAATCTCT 58.705 37.037 15.21 0.00 0.00 3.10
54 55 8.292448 TCCGTACGTAGGTCATATTAAAATCTC 58.708 37.037 15.21 0.00 0.00 2.75
55 56 8.169977 TCCGTACGTAGGTCATATTAAAATCT 57.830 34.615 15.21 0.00 0.00 2.40
56 57 8.857216 CATCCGTACGTAGGTCATATTAAAATC 58.143 37.037 15.21 0.00 0.00 2.17
57 58 8.362639 ACATCCGTACGTAGGTCATATTAAAAT 58.637 33.333 15.21 0.00 0.00 1.82
58 59 7.715657 ACATCCGTACGTAGGTCATATTAAAA 58.284 34.615 15.21 0.00 0.00 1.52
59 60 7.275888 ACATCCGTACGTAGGTCATATTAAA 57.724 36.000 15.21 0.00 0.00 1.52
60 61 6.882610 ACATCCGTACGTAGGTCATATTAA 57.117 37.500 15.21 0.00 0.00 1.40
61 62 9.836864 ATATACATCCGTACGTAGGTCATATTA 57.163 33.333 15.21 0.00 0.00 0.98
62 63 8.743085 ATATACATCCGTACGTAGGTCATATT 57.257 34.615 15.21 0.00 0.00 1.28
63 64 9.486497 CTATATACATCCGTACGTAGGTCATAT 57.514 37.037 15.21 11.85 0.00 1.78
64 65 8.695456 TCTATATACATCCGTACGTAGGTCATA 58.305 37.037 15.21 7.03 0.00 2.15
65 66 7.493971 GTCTATATACATCCGTACGTAGGTCAT 59.506 40.741 15.21 6.25 0.00 3.06
66 67 6.813649 GTCTATATACATCCGTACGTAGGTCA 59.186 42.308 15.21 0.00 0.00 4.02
67 68 6.813649 TGTCTATATACATCCGTACGTAGGTC 59.186 42.308 15.21 4.96 0.00 3.85
68 69 6.701340 TGTCTATATACATCCGTACGTAGGT 58.299 40.000 15.21 9.13 0.00 3.08
69 70 7.783090 ATGTCTATATACATCCGTACGTAGG 57.217 40.000 15.21 8.30 35.08 3.18
99 100 9.899226 GAAGCAAAATCAGTAAATCTACACTTT 57.101 29.630 0.00 0.00 0.00 2.66
100 101 9.066892 TGAAGCAAAATCAGTAAATCTACACTT 57.933 29.630 0.00 0.00 0.00 3.16
101 102 8.621532 TGAAGCAAAATCAGTAAATCTACACT 57.378 30.769 0.00 0.00 0.00 3.55
161 162 9.620259 GAGAGATTTTGAACAGGTCCTAAATAT 57.380 33.333 0.00 0.00 0.00 1.28
162 163 8.047310 GGAGAGATTTTGAACAGGTCCTAAATA 58.953 37.037 0.00 0.00 0.00 1.40
163 164 6.887002 GGAGAGATTTTGAACAGGTCCTAAAT 59.113 38.462 0.00 0.00 0.00 1.40
164 165 6.183361 TGGAGAGATTTTGAACAGGTCCTAAA 60.183 38.462 0.00 0.00 0.00 1.85
165 166 5.309543 TGGAGAGATTTTGAACAGGTCCTAA 59.690 40.000 0.00 0.00 0.00 2.69
166 167 4.844085 TGGAGAGATTTTGAACAGGTCCTA 59.156 41.667 0.00 0.00 0.00 2.94
167 168 3.652869 TGGAGAGATTTTGAACAGGTCCT 59.347 43.478 0.00 0.00 0.00 3.85
168 169 3.753797 GTGGAGAGATTTTGAACAGGTCC 59.246 47.826 0.00 0.00 0.00 4.46
169 170 4.646572 AGTGGAGAGATTTTGAACAGGTC 58.353 43.478 0.00 0.00 0.00 3.85
170 171 4.505742 GGAGTGGAGAGATTTTGAACAGGT 60.506 45.833 0.00 0.00 0.00 4.00
171 172 4.006319 GGAGTGGAGAGATTTTGAACAGG 58.994 47.826 0.00 0.00 0.00 4.00
172 173 4.453819 GTGGAGTGGAGAGATTTTGAACAG 59.546 45.833 0.00 0.00 0.00 3.16
173 174 4.389374 GTGGAGTGGAGAGATTTTGAACA 58.611 43.478 0.00 0.00 0.00 3.18
174 175 3.433615 CGTGGAGTGGAGAGATTTTGAAC 59.566 47.826 0.00 0.00 0.00 3.18
175 176 3.323691 TCGTGGAGTGGAGAGATTTTGAA 59.676 43.478 0.00 0.00 0.00 2.69
176 177 2.897326 TCGTGGAGTGGAGAGATTTTGA 59.103 45.455 0.00 0.00 0.00 2.69
177 178 3.319137 TCGTGGAGTGGAGAGATTTTG 57.681 47.619 0.00 0.00 0.00 2.44
178 179 3.325135 ACTTCGTGGAGTGGAGAGATTTT 59.675 43.478 0.00 0.00 0.00 1.82
179 180 2.900546 ACTTCGTGGAGTGGAGAGATTT 59.099 45.455 0.00 0.00 0.00 2.17
180 181 2.530701 ACTTCGTGGAGTGGAGAGATT 58.469 47.619 0.00 0.00 0.00 2.40
181 182 2.223803 ACTTCGTGGAGTGGAGAGAT 57.776 50.000 0.00 0.00 0.00 2.75
182 183 1.613925 CAACTTCGTGGAGTGGAGAGA 59.386 52.381 0.00 0.00 0.00 3.10
183 184 1.337260 CCAACTTCGTGGAGTGGAGAG 60.337 57.143 0.00 0.00 41.65 3.20
184 185 0.679505 CCAACTTCGTGGAGTGGAGA 59.320 55.000 0.00 0.00 41.65 3.71
185 186 0.393077 ACCAACTTCGTGGAGTGGAG 59.607 55.000 0.00 0.00 41.65 3.86
186 187 0.105964 CACCAACTTCGTGGAGTGGA 59.894 55.000 0.00 0.00 41.65 4.02
187 188 0.105964 TCACCAACTTCGTGGAGTGG 59.894 55.000 0.00 0.00 41.65 4.00
188 189 1.867233 CTTCACCAACTTCGTGGAGTG 59.133 52.381 0.00 0.00 41.65 3.51
189 190 1.810412 GCTTCACCAACTTCGTGGAGT 60.810 52.381 0.00 0.00 41.65 3.85
190 191 0.868406 GCTTCACCAACTTCGTGGAG 59.132 55.000 0.00 0.00 41.65 3.86
191 192 0.468226 AGCTTCACCAACTTCGTGGA 59.532 50.000 0.00 0.00 41.65 4.02
192 193 0.868406 GAGCTTCACCAACTTCGTGG 59.132 55.000 0.00 0.00 44.92 4.94
193 194 0.508641 CGAGCTTCACCAACTTCGTG 59.491 55.000 0.00 0.00 0.00 4.35
194 195 0.387929 TCGAGCTTCACCAACTTCGT 59.612 50.000 0.00 0.00 0.00 3.85
195 196 1.714794 ATCGAGCTTCACCAACTTCG 58.285 50.000 0.00 0.00 0.00 3.79
196 197 4.024048 TCAAAATCGAGCTTCACCAACTTC 60.024 41.667 0.00 0.00 0.00 3.01
197 198 3.882888 TCAAAATCGAGCTTCACCAACTT 59.117 39.130 0.00 0.00 0.00 2.66
198 199 3.251004 GTCAAAATCGAGCTTCACCAACT 59.749 43.478 0.00 0.00 0.00 3.16
199 200 3.003275 TGTCAAAATCGAGCTTCACCAAC 59.997 43.478 0.00 0.00 0.00 3.77
200 201 3.210227 TGTCAAAATCGAGCTTCACCAA 58.790 40.909 0.00 0.00 0.00 3.67
201 202 2.807967 CTGTCAAAATCGAGCTTCACCA 59.192 45.455 0.00 0.00 0.00 4.17
202 203 2.413371 GCTGTCAAAATCGAGCTTCACC 60.413 50.000 0.00 0.00 0.00 4.02
203 204 2.481952 AGCTGTCAAAATCGAGCTTCAC 59.518 45.455 0.00 0.00 38.68 3.18
204 205 2.738846 GAGCTGTCAAAATCGAGCTTCA 59.261 45.455 0.00 0.00 41.88 3.02
205 206 2.999355 AGAGCTGTCAAAATCGAGCTTC 59.001 45.455 0.00 0.00 41.88 3.86
206 207 3.051081 AGAGCTGTCAAAATCGAGCTT 57.949 42.857 0.00 0.00 41.88 3.74
207 208 2.758736 AGAGCTGTCAAAATCGAGCT 57.241 45.000 0.00 0.00 44.50 4.09
208 209 4.115516 TGATAGAGCTGTCAAAATCGAGC 58.884 43.478 0.00 0.00 0.00 5.03
209 210 5.233902 CCTTGATAGAGCTGTCAAAATCGAG 59.766 44.000 10.24 0.00 39.58 4.04
210 211 5.111989 CCTTGATAGAGCTGTCAAAATCGA 58.888 41.667 10.24 0.00 39.58 3.59
211 212 4.872691 ACCTTGATAGAGCTGTCAAAATCG 59.127 41.667 10.24 0.72 39.58 3.34
212 213 5.877012 TCACCTTGATAGAGCTGTCAAAATC 59.123 40.000 10.24 0.00 39.58 2.17
213 214 5.809001 TCACCTTGATAGAGCTGTCAAAAT 58.191 37.500 10.24 0.59 39.58 1.82
214 215 5.227569 TCACCTTGATAGAGCTGTCAAAA 57.772 39.130 10.24 0.00 39.58 2.44
215 216 4.825422 CTCACCTTGATAGAGCTGTCAAA 58.175 43.478 10.24 0.00 39.58 2.69
216 217 4.462508 CTCACCTTGATAGAGCTGTCAA 57.537 45.455 8.95 8.95 38.17 3.18
223 224 4.402155 AGACTTCAGCTCACCTTGATAGAG 59.598 45.833 0.00 0.00 0.00 2.43
224 225 4.159321 CAGACTTCAGCTCACCTTGATAGA 59.841 45.833 0.00 0.00 0.00 1.98
225 226 4.431809 CAGACTTCAGCTCACCTTGATAG 58.568 47.826 0.00 0.00 0.00 2.08
226 227 3.196469 CCAGACTTCAGCTCACCTTGATA 59.804 47.826 0.00 0.00 0.00 2.15
227 228 2.027377 CCAGACTTCAGCTCACCTTGAT 60.027 50.000 0.00 0.00 0.00 2.57
228 229 1.345741 CCAGACTTCAGCTCACCTTGA 59.654 52.381 0.00 0.00 0.00 3.02
229 230 1.071385 ACCAGACTTCAGCTCACCTTG 59.929 52.381 0.00 0.00 0.00 3.61
230 231 1.346068 GACCAGACTTCAGCTCACCTT 59.654 52.381 0.00 0.00 0.00 3.50
231 232 0.972883 GACCAGACTTCAGCTCACCT 59.027 55.000 0.00 0.00 0.00 4.00
232 233 0.972883 AGACCAGACTTCAGCTCACC 59.027 55.000 0.00 0.00 0.00 4.02
233 234 1.938926 GCAGACCAGACTTCAGCTCAC 60.939 57.143 0.00 0.00 0.00 3.51
234 235 0.319728 GCAGACCAGACTTCAGCTCA 59.680 55.000 0.00 0.00 0.00 4.26
235 236 0.607620 AGCAGACCAGACTTCAGCTC 59.392 55.000 0.00 0.00 30.58 4.09
236 237 0.607620 GAGCAGACCAGACTTCAGCT 59.392 55.000 0.00 0.00 38.44 4.24
237 238 0.390998 GGAGCAGACCAGACTTCAGC 60.391 60.000 0.00 0.00 0.00 4.26
238 239 0.108898 CGGAGCAGACCAGACTTCAG 60.109 60.000 0.00 0.00 0.00 3.02
239 240 0.539669 TCGGAGCAGACCAGACTTCA 60.540 55.000 0.00 0.00 0.00 3.02
240 241 0.172352 CTCGGAGCAGACCAGACTTC 59.828 60.000 0.00 0.00 0.00 3.01
241 242 0.251386 TCTCGGAGCAGACCAGACTT 60.251 55.000 0.00 0.00 0.00 3.01
242 243 0.679640 CTCTCGGAGCAGACCAGACT 60.680 60.000 0.00 0.00 0.00 3.24
243 244 1.806568 CTCTCGGAGCAGACCAGAC 59.193 63.158 0.00 0.00 0.00 3.51
244 245 4.328041 CTCTCGGAGCAGACCAGA 57.672 61.111 0.00 0.00 0.00 3.86
256 257 0.941542 CTCCTCTAACTCCGCTCTCG 59.058 60.000 0.00 0.00 0.00 4.04
257 258 1.673920 CACTCCTCTAACTCCGCTCTC 59.326 57.143 0.00 0.00 0.00 3.20
258 259 1.282447 TCACTCCTCTAACTCCGCTCT 59.718 52.381 0.00 0.00 0.00 4.09
259 260 1.752683 TCACTCCTCTAACTCCGCTC 58.247 55.000 0.00 0.00 0.00 5.03
260 261 2.096248 CTTCACTCCTCTAACTCCGCT 58.904 52.381 0.00 0.00 0.00 5.52
261 262 2.093106 TCTTCACTCCTCTAACTCCGC 58.907 52.381 0.00 0.00 0.00 5.54
262 263 3.611970 TCTCTTCACTCCTCTAACTCCG 58.388 50.000 0.00 0.00 0.00 4.63
263 264 5.336929 GGTTTCTCTTCACTCCTCTAACTCC 60.337 48.000 0.00 0.00 0.00 3.85
264 265 5.620429 CGGTTTCTCTTCACTCCTCTAACTC 60.620 48.000 0.00 0.00 0.00 3.01
265 266 4.218852 CGGTTTCTCTTCACTCCTCTAACT 59.781 45.833 0.00 0.00 0.00 2.24
266 267 4.217983 TCGGTTTCTCTTCACTCCTCTAAC 59.782 45.833 0.00 0.00 0.00 2.34
267 268 4.404640 TCGGTTTCTCTTCACTCCTCTAA 58.595 43.478 0.00 0.00 0.00 2.10
268 269 4.030314 TCGGTTTCTCTTCACTCCTCTA 57.970 45.455 0.00 0.00 0.00 2.43
269 270 2.877866 TCGGTTTCTCTTCACTCCTCT 58.122 47.619 0.00 0.00 0.00 3.69
270 271 3.662247 TTCGGTTTCTCTTCACTCCTC 57.338 47.619 0.00 0.00 0.00 3.71
271 272 3.866449 GCATTCGGTTTCTCTTCACTCCT 60.866 47.826 0.00 0.00 0.00 3.69
272 273 2.416893 GCATTCGGTTTCTCTTCACTCC 59.583 50.000 0.00 0.00 0.00 3.85
273 274 3.330267 AGCATTCGGTTTCTCTTCACTC 58.670 45.455 0.00 0.00 0.00 3.51
274 275 3.330267 GAGCATTCGGTTTCTCTTCACT 58.670 45.455 0.00 0.00 0.00 3.41
275 276 2.416893 GGAGCATTCGGTTTCTCTTCAC 59.583 50.000 0.00 0.00 0.00 3.18
276 277 2.615493 GGGAGCATTCGGTTTCTCTTCA 60.615 50.000 0.00 0.00 0.00 3.02
277 278 2.010497 GGGAGCATTCGGTTTCTCTTC 58.990 52.381 0.00 0.00 0.00 2.87
278 279 1.630878 AGGGAGCATTCGGTTTCTCTT 59.369 47.619 0.00 0.00 0.00 2.85
279 280 1.280457 AGGGAGCATTCGGTTTCTCT 58.720 50.000 0.00 0.00 0.00 3.10
280 281 2.115343 AAGGGAGCATTCGGTTTCTC 57.885 50.000 0.00 0.00 0.00 2.87
281 282 2.092914 CCTAAGGGAGCATTCGGTTTCT 60.093 50.000 0.00 0.00 33.58 2.52
282 283 2.093128 TCCTAAGGGAGCATTCGGTTTC 60.093 50.000 0.00 0.00 36.57 2.78
283 284 1.913419 TCCTAAGGGAGCATTCGGTTT 59.087 47.619 0.00 0.00 36.57 3.27
284 285 1.580059 TCCTAAGGGAGCATTCGGTT 58.420 50.000 0.00 0.00 36.57 4.44
285 286 1.580059 TTCCTAAGGGAGCATTCGGT 58.420 50.000 0.00 0.00 43.29 4.69
286 287 2.498167 CATTCCTAAGGGAGCATTCGG 58.502 52.381 0.00 0.00 43.29 4.30
287 288 2.104792 TCCATTCCTAAGGGAGCATTCG 59.895 50.000 0.00 0.00 43.29 3.34
288 289 3.864789 TCCATTCCTAAGGGAGCATTC 57.135 47.619 0.00 0.00 43.29 2.67
294 295 4.569676 TGATACCTCCATTCCTAAGGGA 57.430 45.455 0.00 0.00 39.39 4.20
295 296 5.646692 TTTGATACCTCCATTCCTAAGGG 57.353 43.478 0.00 0.00 34.31 3.95
296 297 6.038271 CGTTTTTGATACCTCCATTCCTAAGG 59.962 42.308 0.00 0.00 36.21 2.69
297 298 6.038271 CCGTTTTTGATACCTCCATTCCTAAG 59.962 42.308 0.00 0.00 0.00 2.18
298 299 5.883673 CCGTTTTTGATACCTCCATTCCTAA 59.116 40.000 0.00 0.00 0.00 2.69
299 300 5.190132 TCCGTTTTTGATACCTCCATTCCTA 59.810 40.000 0.00 0.00 0.00 2.94
300 301 4.018779 TCCGTTTTTGATACCTCCATTCCT 60.019 41.667 0.00 0.00 0.00 3.36
301 302 4.266714 TCCGTTTTTGATACCTCCATTCC 58.733 43.478 0.00 0.00 0.00 3.01
302 303 5.414765 ACTTCCGTTTTTGATACCTCCATTC 59.585 40.000 0.00 0.00 0.00 2.67
303 304 5.321927 ACTTCCGTTTTTGATACCTCCATT 58.678 37.500 0.00 0.00 0.00 3.16
304 305 4.918588 ACTTCCGTTTTTGATACCTCCAT 58.081 39.130 0.00 0.00 0.00 3.41
305 306 4.360951 ACTTCCGTTTTTGATACCTCCA 57.639 40.909 0.00 0.00 0.00 3.86
306 307 5.239963 TGAAACTTCCGTTTTTGATACCTCC 59.760 40.000 0.00 0.00 43.09 4.30
307 308 6.308371 TGAAACTTCCGTTTTTGATACCTC 57.692 37.500 0.00 0.00 43.09 3.85
308 309 6.702716 TTGAAACTTCCGTTTTTGATACCT 57.297 33.333 0.00 0.00 43.09 3.08
309 310 5.401376 GCTTGAAACTTCCGTTTTTGATACC 59.599 40.000 0.00 0.00 43.09 2.73
310 311 5.115021 CGCTTGAAACTTCCGTTTTTGATAC 59.885 40.000 0.00 0.00 43.09 2.24
311 312 5.209240 CGCTTGAAACTTCCGTTTTTGATA 58.791 37.500 0.00 0.00 43.09 2.15
312 313 4.041723 CGCTTGAAACTTCCGTTTTTGAT 58.958 39.130 0.00 0.00 43.09 2.57
313 314 3.119779 ACGCTTGAAACTTCCGTTTTTGA 60.120 39.130 0.00 0.00 43.09 2.69
314 315 3.175929 ACGCTTGAAACTTCCGTTTTTG 58.824 40.909 0.00 0.00 43.09 2.44
315 316 3.431856 GACGCTTGAAACTTCCGTTTTT 58.568 40.909 0.00 0.00 43.09 1.94
316 317 2.538132 CGACGCTTGAAACTTCCGTTTT 60.538 45.455 0.00 0.00 43.09 2.43
317 318 1.004292 CGACGCTTGAAACTTCCGTTT 60.004 47.619 0.00 0.00 45.58 3.60
318 319 0.580104 CGACGCTTGAAACTTCCGTT 59.420 50.000 0.00 0.00 34.03 4.44
319 320 1.828331 GCGACGCTTGAAACTTCCGT 61.828 55.000 13.73 0.00 34.52 4.69
320 321 1.154654 GCGACGCTTGAAACTTCCG 60.155 57.895 13.73 0.00 0.00 4.30
321 322 1.206831 GGCGACGCTTGAAACTTCC 59.793 57.895 20.77 0.00 0.00 3.46
322 323 0.517316 ATGGCGACGCTTGAAACTTC 59.483 50.000 20.77 0.00 0.00 3.01
323 324 0.951558 AATGGCGACGCTTGAAACTT 59.048 45.000 20.77 0.00 0.00 2.66
324 325 0.951558 AAATGGCGACGCTTGAAACT 59.048 45.000 20.77 0.00 0.00 2.66
325 326 1.052287 CAAATGGCGACGCTTGAAAC 58.948 50.000 20.77 1.85 0.00 2.78
326 327 0.947960 TCAAATGGCGACGCTTGAAA 59.052 45.000 20.77 0.00 32.49 2.69
327 328 0.947960 TTCAAATGGCGACGCTTGAA 59.052 45.000 23.70 23.70 39.67 2.69
328 329 0.516877 CTTCAAATGGCGACGCTTGA 59.483 50.000 20.77 18.18 33.28 3.02
329 330 1.067199 GCTTCAAATGGCGACGCTTG 61.067 55.000 20.77 16.12 0.00 4.01
330 331 1.210155 GCTTCAAATGGCGACGCTT 59.790 52.632 20.77 3.88 0.00 4.68
331 332 1.639298 GAGCTTCAAATGGCGACGCT 61.639 55.000 20.77 0.00 40.34 5.07
332 333 1.226128 GAGCTTCAAATGGCGACGC 60.226 57.895 12.43 12.43 0.00 5.19
333 334 1.021390 AGGAGCTTCAAATGGCGACG 61.021 55.000 0.00 0.00 0.00 5.12
334 335 0.449388 CAGGAGCTTCAAATGGCGAC 59.551 55.000 0.00 0.00 0.00 5.19
335 336 0.324614 TCAGGAGCTTCAAATGGCGA 59.675 50.000 0.00 0.00 0.00 5.54
336 337 1.135575 GTTCAGGAGCTTCAAATGGCG 60.136 52.381 0.00 0.00 0.00 5.69
337 338 2.094854 CAGTTCAGGAGCTTCAAATGGC 60.095 50.000 0.00 0.00 0.00 4.40
338 339 3.152341 ACAGTTCAGGAGCTTCAAATGG 58.848 45.455 0.00 0.00 0.00 3.16
339 340 4.070716 AGACAGTTCAGGAGCTTCAAATG 58.929 43.478 0.00 0.00 0.00 2.32
340 341 4.363991 AGACAGTTCAGGAGCTTCAAAT 57.636 40.909 0.00 0.00 0.00 2.32
341 342 3.845781 AGACAGTTCAGGAGCTTCAAA 57.154 42.857 0.00 0.00 0.00 2.69
342 343 3.134623 TGAAGACAGTTCAGGAGCTTCAA 59.865 43.478 0.00 0.00 38.84 2.69
343 344 2.700371 TGAAGACAGTTCAGGAGCTTCA 59.300 45.455 0.00 0.00 39.30 3.02
344 345 3.063485 GTGAAGACAGTTCAGGAGCTTC 58.937 50.000 0.00 0.00 34.04 3.86
345 346 2.546795 CGTGAAGACAGTTCAGGAGCTT 60.547 50.000 2.05 0.00 36.68 3.74
346 347 1.000283 CGTGAAGACAGTTCAGGAGCT 60.000 52.381 2.05 0.00 36.68 4.09
347 348 1.269831 ACGTGAAGACAGTTCAGGAGC 60.270 52.381 12.91 0.00 37.63 4.70
348 349 2.802787 ACGTGAAGACAGTTCAGGAG 57.197 50.000 12.91 0.43 37.63 3.69
349 350 2.223971 GGAACGTGAAGACAGTTCAGGA 60.224 50.000 12.91 0.00 44.20 3.86
350 351 2.135933 GGAACGTGAAGACAGTTCAGG 58.864 52.381 9.33 6.02 44.20 3.86
351 352 2.821546 TGGAACGTGAAGACAGTTCAG 58.178 47.619 9.33 0.00 44.20 3.02
352 353 2.971660 TGGAACGTGAAGACAGTTCA 57.028 45.000 9.33 0.00 44.20 3.18
353 354 3.195661 ACTTGGAACGTGAAGACAGTTC 58.804 45.455 8.73 0.00 42.36 3.01
354 355 3.118738 AGACTTGGAACGTGAAGACAGTT 60.119 43.478 8.73 0.00 0.00 3.16
355 356 2.431057 AGACTTGGAACGTGAAGACAGT 59.569 45.455 8.73 0.00 0.00 3.55
356 357 2.797156 CAGACTTGGAACGTGAAGACAG 59.203 50.000 8.73 0.00 0.00 3.51
357 358 2.821546 CAGACTTGGAACGTGAAGACA 58.178 47.619 8.73 0.00 0.00 3.41
358 359 1.527311 GCAGACTTGGAACGTGAAGAC 59.473 52.381 8.73 3.72 0.00 3.01
359 360 1.138069 TGCAGACTTGGAACGTGAAGA 59.862 47.619 8.73 0.00 0.00 2.87
360 361 1.581934 TGCAGACTTGGAACGTGAAG 58.418 50.000 0.00 0.00 0.00 3.02
361 362 2.031258 TTGCAGACTTGGAACGTGAA 57.969 45.000 0.00 0.00 28.89 3.18
362 363 1.668751 GTTTGCAGACTTGGAACGTGA 59.331 47.619 0.00 0.00 34.12 4.35
363 364 1.400142 TGTTTGCAGACTTGGAACGTG 59.600 47.619 9.02 0.00 34.12 4.49
364 365 1.745232 TGTTTGCAGACTTGGAACGT 58.255 45.000 9.02 0.00 34.12 3.99
365 366 2.842208 TTGTTTGCAGACTTGGAACG 57.158 45.000 9.02 0.00 34.12 3.95
366 367 3.843999 TGTTTGTTTGCAGACTTGGAAC 58.156 40.909 9.02 8.67 34.12 3.62
367 368 4.527509 TTGTTTGTTTGCAGACTTGGAA 57.472 36.364 9.02 0.00 31.72 3.53
368 369 4.493547 CTTTGTTTGTTTGCAGACTTGGA 58.506 39.130 9.02 0.00 31.72 3.53
369 370 3.618150 CCTTTGTTTGTTTGCAGACTTGG 59.382 43.478 9.02 0.00 31.72 3.61
370 371 3.062504 GCCTTTGTTTGTTTGCAGACTTG 59.937 43.478 9.02 0.00 31.72 3.16
371 372 3.055891 AGCCTTTGTTTGTTTGCAGACTT 60.056 39.130 9.02 0.00 31.72 3.01
372 373 2.497273 AGCCTTTGTTTGTTTGCAGACT 59.503 40.909 9.02 0.00 31.72 3.24
373 374 2.604462 CAGCCTTTGTTTGTTTGCAGAC 59.396 45.455 0.00 0.00 0.00 3.51
374 375 2.418471 CCAGCCTTTGTTTGTTTGCAGA 60.418 45.455 0.00 0.00 0.00 4.26
375 376 1.935199 CCAGCCTTTGTTTGTTTGCAG 59.065 47.619 0.00 0.00 0.00 4.41
376 377 1.277557 ACCAGCCTTTGTTTGTTTGCA 59.722 42.857 0.00 0.00 0.00 4.08
377 378 2.022764 ACCAGCCTTTGTTTGTTTGC 57.977 45.000 0.00 0.00 0.00 3.68
378 379 4.142271 TGAGTACCAGCCTTTGTTTGTTTG 60.142 41.667 0.00 0.00 0.00 2.93
379 380 4.020543 TGAGTACCAGCCTTTGTTTGTTT 58.979 39.130 0.00 0.00 0.00 2.83
380 381 3.626930 TGAGTACCAGCCTTTGTTTGTT 58.373 40.909 0.00 0.00 0.00 2.83
381 382 3.290948 TGAGTACCAGCCTTTGTTTGT 57.709 42.857 0.00 0.00 0.00 2.83
382 383 4.037923 ACAATGAGTACCAGCCTTTGTTTG 59.962 41.667 0.00 0.00 0.00 2.93
383 384 4.215109 ACAATGAGTACCAGCCTTTGTTT 58.785 39.130 0.00 0.00 0.00 2.83
384 385 3.821033 GACAATGAGTACCAGCCTTTGTT 59.179 43.478 0.00 0.00 31.29 2.83
385 386 3.181445 TGACAATGAGTACCAGCCTTTGT 60.181 43.478 0.00 0.00 33.00 2.83
386 387 3.411446 TGACAATGAGTACCAGCCTTTG 58.589 45.455 0.00 0.00 0.00 2.77
387 388 3.788227 TGACAATGAGTACCAGCCTTT 57.212 42.857 0.00 0.00 0.00 3.11
388 389 3.679917 CGATGACAATGAGTACCAGCCTT 60.680 47.826 0.00 0.00 0.00 4.35
389 390 2.159043 CGATGACAATGAGTACCAGCCT 60.159 50.000 0.00 0.00 0.00 4.58
390 391 2.205074 CGATGACAATGAGTACCAGCC 58.795 52.381 0.00 0.00 0.00 4.85
391 392 2.205074 CCGATGACAATGAGTACCAGC 58.795 52.381 0.00 0.00 0.00 4.85
392 393 2.168521 ACCCGATGACAATGAGTACCAG 59.831 50.000 0.00 0.00 0.00 4.00
393 394 2.184533 ACCCGATGACAATGAGTACCA 58.815 47.619 0.00 0.00 0.00 3.25
394 395 2.981859 ACCCGATGACAATGAGTACC 57.018 50.000 0.00 0.00 0.00 3.34
395 396 3.195661 GGAACCCGATGACAATGAGTAC 58.804 50.000 0.00 0.00 0.00 2.73
396 397 2.835156 TGGAACCCGATGACAATGAGTA 59.165 45.455 0.00 0.00 0.00 2.59
397 398 1.628340 TGGAACCCGATGACAATGAGT 59.372 47.619 0.00 0.00 0.00 3.41
398 399 2.093500 TCTGGAACCCGATGACAATGAG 60.093 50.000 0.00 0.00 0.00 2.90
399 400 1.905894 TCTGGAACCCGATGACAATGA 59.094 47.619 0.00 0.00 0.00 2.57
400 401 2.093500 TCTCTGGAACCCGATGACAATG 60.093 50.000 0.00 0.00 0.00 2.82
401 402 2.187958 TCTCTGGAACCCGATGACAAT 58.812 47.619 0.00 0.00 0.00 2.71
402 403 1.639722 TCTCTGGAACCCGATGACAA 58.360 50.000 0.00 0.00 0.00 3.18
403 404 1.639722 TTCTCTGGAACCCGATGACA 58.360 50.000 0.00 0.00 0.00 3.58
404 405 2.762535 TTTCTCTGGAACCCGATGAC 57.237 50.000 0.00 0.00 0.00 3.06
405 406 3.780804 TTTTTCTCTGGAACCCGATGA 57.219 42.857 0.00 0.00 0.00 2.92
423 424 0.108585 TGCTCTCGAGGGCACTTTTT 59.891 50.000 35.60 0.00 33.23 1.94
424 425 0.321122 CTGCTCTCGAGGGCACTTTT 60.321 55.000 35.60 0.00 34.57 2.27
425 426 1.294780 CTGCTCTCGAGGGCACTTT 59.705 57.895 35.60 0.00 34.57 2.66
426 427 2.977178 CTGCTCTCGAGGGCACTT 59.023 61.111 35.60 0.00 34.57 3.16
427 428 3.768922 GCTGCTCTCGAGGGCACT 61.769 66.667 35.60 0.00 34.57 4.40
428 429 4.828925 GGCTGCTCTCGAGGGCAC 62.829 72.222 35.60 28.42 34.57 5.01
430 431 4.527583 CAGGCTGCTCTCGAGGGC 62.528 72.222 30.64 30.64 0.00 5.19
431 432 4.527583 GCAGGCTGCTCTCGAGGG 62.528 72.222 31.37 11.08 40.96 4.30
441 442 3.513680 TTATCATTTTGCAGCAGGCTG 57.486 42.857 16.68 16.68 45.15 4.85
442 443 6.041182 TGAATATTATCATTTTGCAGCAGGCT 59.959 34.615 0.00 0.00 45.15 4.58
443 444 6.218019 TGAATATTATCATTTTGCAGCAGGC 58.782 36.000 0.00 0.00 45.13 4.85
444 445 8.651391 TTTGAATATTATCATTTTGCAGCAGG 57.349 30.769 0.00 0.00 0.00 4.85
446 447 9.819267 TGATTTGAATATTATCATTTTGCAGCA 57.181 25.926 0.00 0.00 0.00 4.41
455 456 9.003658 GGAACCTCGTGATTTGAATATTATCAT 57.996 33.333 3.35 0.00 31.58 2.45
456 457 7.990314 TGGAACCTCGTGATTTGAATATTATCA 59.010 33.333 0.00 0.00 0.00 2.15
457 458 8.378172 TGGAACCTCGTGATTTGAATATTATC 57.622 34.615 0.00 0.00 0.00 1.75
458 459 8.924511 ATGGAACCTCGTGATTTGAATATTAT 57.075 30.769 0.00 0.00 0.00 1.28
513 514 0.461870 TCCCGTGCTGGATTTCATCG 60.462 55.000 0.00 0.00 42.00 3.84
703 705 4.331168 GGAGAAGAATGGTTCGAATGTCTG 59.669 45.833 0.00 0.00 34.02 3.51
706 708 4.508662 GAGGAGAAGAATGGTTCGAATGT 58.491 43.478 0.00 0.00 34.02 2.71
708 710 3.777522 AGGAGGAGAAGAATGGTTCGAAT 59.222 43.478 0.00 0.00 34.02 3.34
828 838 3.206412 AGAGATCCTTCTGGAAGCCTCTA 59.794 47.826 17.61 1.11 46.80 2.43
1191 1202 2.421952 CGGGGATGACTGGAATGTGAAT 60.422 50.000 0.00 0.00 0.00 2.57
1260 1271 1.303236 TCACCTGCATTTCACCGGG 60.303 57.895 6.32 0.00 0.00 5.73
1261 1272 1.308069 CCTCACCTGCATTTCACCGG 61.308 60.000 0.00 0.00 0.00 5.28
1262 1273 0.321564 TCCTCACCTGCATTTCACCG 60.322 55.000 0.00 0.00 0.00 4.94
1347 1364 1.895020 CGGGTGAGGTCGAATTGGGA 61.895 60.000 0.00 0.00 0.00 4.37
1399 1416 8.090214 CAGACATCCAGGTAAAATGTTTGAAAT 58.910 33.333 4.31 0.00 37.58 2.17
1423 1442 6.331369 AGATTGTAACAAATTGACCACCAG 57.669 37.500 0.00 0.00 0.00 4.00
1494 1516 1.067635 CATTGCAACCACCAGCCTAAC 60.068 52.381 0.00 0.00 0.00 2.34
1495 1517 1.202989 TCATTGCAACCACCAGCCTAA 60.203 47.619 0.00 0.00 0.00 2.69
1496 1518 0.403655 TCATTGCAACCACCAGCCTA 59.596 50.000 0.00 0.00 0.00 3.93
1498 1520 0.609662 AATCATTGCAACCACCAGCC 59.390 50.000 0.00 0.00 0.00 4.85
1584 1615 3.379240 CATGTTTGTTTCAATGACGGCA 58.621 40.909 0.00 0.00 0.00 5.69
1645 1676 9.672673 TTCCAAATCCAAAGAACAAAAATGTAA 57.327 25.926 0.00 0.00 0.00 2.41
2093 2299 5.536554 TCAGCTGCTTAAATTCTTCTTCG 57.463 39.130 9.47 0.00 0.00 3.79
2203 2410 5.916661 ACAGATAAACCATCGTAGACAGT 57.083 39.130 0.00 0.00 42.51 3.55
2204 2411 6.565234 AGAACAGATAAACCATCGTAGACAG 58.435 40.000 0.00 0.00 42.51 3.51
2300 2507 3.776969 ACTGGTTAGCATTCTCATCCTCA 59.223 43.478 0.00 0.00 0.00 3.86
2611 2818 1.226831 GGCTCGACTCTAGTGCTGC 60.227 63.158 0.00 0.00 0.00 5.25
2883 3090 3.895041 ACATTGGTCCCTGTTAAAGTTGG 59.105 43.478 0.00 0.00 0.00 3.77
2895 3102 3.467374 TTTCTGCAAAACATTGGTCCC 57.533 42.857 0.00 0.00 0.00 4.46
3035 3242 0.846015 TACTCCCCGAATACCTCCGA 59.154 55.000 0.00 0.00 0.00 4.55
3074 3281 6.146673 GCAAGCAGAAGAAATTAAGCATTTGT 59.853 34.615 0.00 0.00 35.02 2.83
3120 3327 8.776376 AGTTGAAAAGAAAACAACAATGACAT 57.224 26.923 0.00 0.00 43.95 3.06
3149 3356 3.954200 TGCTCACCAAAAGCATCATAGA 58.046 40.909 0.00 0.00 44.51 1.98
3230 3437 0.326264 TCTCAGAGCAAGCCTTTCCC 59.674 55.000 0.00 0.00 0.00 3.97
3326 3533 4.984785 GTCTTTGAAGCATCCTTTTCAACC 59.015 41.667 0.00 0.00 41.51 3.77
3413 3620 6.708285 TGAAGAGGGGAATACTTACTCAAAC 58.292 40.000 0.00 0.00 0.00 2.93
3466 3673 4.396166 ACTCAGATTTCGCCAAATTACTGG 59.604 41.667 5.91 0.00 39.71 4.00
3476 3683 5.119898 CAGCATATCTTACTCAGATTTCGCC 59.880 44.000 0.00 0.00 39.47 5.54
3477 3684 5.923114 TCAGCATATCTTACTCAGATTTCGC 59.077 40.000 0.00 0.00 39.47 4.70
3485 3692 6.268387 TCATCATGGTCAGCATATCTTACTCA 59.732 38.462 0.00 0.00 0.00 3.41
3500 3707 4.446371 CCCAGAGTTAACTCATCATGGTC 58.554 47.826 31.80 7.83 45.21 4.02
3615 3823 5.565259 GCTACGATATTGGCAATGAAAATCG 59.435 40.000 28.27 28.27 40.28 3.34
3824 4042 6.920210 TCGACTGATAACTGCTCATATGAAAG 59.080 38.462 6.90 9.79 0.00 2.62
3851 4069 3.845781 TCCTGAAACAGAAGCTTCAGT 57.154 42.857 27.57 22.76 43.27 3.41
3875 4093 5.540337 AGATTCTGTCTCACTACCAGTTTCA 59.460 40.000 0.00 0.00 28.45 2.69
4119 4337 1.471684 CTTTGCTTCTGATCTGTGGCC 59.528 52.381 0.00 0.00 0.00 5.36
4408 4626 5.865085 ACTCTCATAAGTGCCAACAAACTA 58.135 37.500 0.00 0.00 0.00 2.24
4523 4741 1.557371 GGCCAGACTCTTTTCCTAGCT 59.443 52.381 0.00 0.00 0.00 3.32
4552 4770 7.995488 ACTCCTAATTCTCCCTCAATTGTAATG 59.005 37.037 5.13 0.00 0.00 1.90
4720 4938 9.923143 TCATACATACTCAATTTAATACTCCCG 57.077 33.333 0.00 0.00 0.00 5.14
4764 4982 7.559897 GGTTGGGAGAATAGAGAGGATATAGAG 59.440 44.444 0.00 0.00 0.00 2.43
4785 5003 1.381191 GTTATGGGGGCAGGGTTGG 60.381 63.158 0.00 0.00 0.00 3.77
4793 5011 1.005450 TGGTGAGAAAGTTATGGGGGC 59.995 52.381 0.00 0.00 0.00 5.80
4999 5217 5.350091 GGCTTTGTTGTTGTTGTTGTTGTAT 59.650 36.000 0.00 0.00 0.00 2.29
5220 5438 8.090831 GCCTGAAGAACCTGAAAGAAATAAAAT 58.909 33.333 0.00 0.00 34.07 1.82
5551 5773 6.911511 CGTACCCAAAACGTTTTATGAAAGAA 59.088 34.615 24.79 4.26 35.66 2.52
5626 5848 1.656652 CTAATGGGTGGAGTTCAGCG 58.343 55.000 0.00 0.00 44.29 5.18
5667 5889 5.704515 GGAACTGCAATCATGTGATATAGCT 59.295 40.000 12.83 0.00 33.73 3.32
5784 6006 7.067496 AGAAGATAAGGAAGTGTTGTTCTCA 57.933 36.000 0.00 0.00 0.00 3.27
5910 6133 5.906772 ACCTCCGTCCCAAATTATAAGAT 57.093 39.130 0.00 0.00 0.00 2.40
6093 6316 0.461961 AGAGACCTTACAGGCGATGC 59.538 55.000 0.00 0.00 39.63 3.91
6162 6385 2.271800 CTACTGTGCAAAGGGATCGTC 58.728 52.381 9.18 0.00 0.00 4.20
6238 6461 2.876550 ACTACGAAACAGCAAACCCTTC 59.123 45.455 0.00 0.00 0.00 3.46
6261 6484 2.034532 TGCCATGTGAGCCACTGG 59.965 61.111 13.97 13.97 36.48 4.00
6290 6513 3.806316 ACGAAGAACAATGCCTTTACG 57.194 42.857 0.00 0.00 0.00 3.18
6301 6524 5.730550 ACAAGGCTGATATTACGAAGAACA 58.269 37.500 0.00 0.00 0.00 3.18
6410 6634 1.475280 TGCAATTGAGAGCAAGATGGC 59.525 47.619 10.34 0.00 37.90 4.40
6411 6635 2.479730 GCTGCAATTGAGAGCAAGATGG 60.480 50.000 19.65 0.00 40.73 3.51
6622 6847 7.345653 TGTTCACATAACTAGGGATTCAGATCT 59.654 37.037 0.00 0.00 32.66 2.75
6712 6944 7.562454 TCACTCTTATATTTCTTTACGGAGGGA 59.438 37.037 0.00 0.00 0.00 4.20
6713 6945 7.723324 TCACTCTTATATTTCTTTACGGAGGG 58.277 38.462 0.00 0.00 0.00 4.30
6714 6946 8.414778 ACTCACTCTTATATTTCTTTACGGAGG 58.585 37.037 0.00 0.00 0.00 4.30
6729 6961 8.842280 GCTGTCTTATGTAGTACTCACTCTTAT 58.158 37.037 0.00 0.00 36.14 1.73
6730 6962 7.282675 GGCTGTCTTATGTAGTACTCACTCTTA 59.717 40.741 0.00 0.00 36.14 2.10
6731 6963 6.095720 GGCTGTCTTATGTAGTACTCACTCTT 59.904 42.308 0.00 0.00 36.14 2.85
6732 6964 5.591067 GGCTGTCTTATGTAGTACTCACTCT 59.409 44.000 0.00 0.00 36.14 3.24
6733 6965 5.504337 CGGCTGTCTTATGTAGTACTCACTC 60.504 48.000 0.00 0.00 36.14 3.51
6734 6966 4.335874 CGGCTGTCTTATGTAGTACTCACT 59.664 45.833 0.00 0.00 38.91 3.41
6735 6967 4.334759 TCGGCTGTCTTATGTAGTACTCAC 59.665 45.833 0.00 0.00 0.00 3.51
6736 6968 4.520179 TCGGCTGTCTTATGTAGTACTCA 58.480 43.478 0.00 0.00 0.00 3.41
6737 6969 4.575645 ACTCGGCTGTCTTATGTAGTACTC 59.424 45.833 0.00 0.00 0.00 2.59
6738 6970 4.525024 ACTCGGCTGTCTTATGTAGTACT 58.475 43.478 0.00 0.00 0.00 2.73
6739 6971 4.897025 ACTCGGCTGTCTTATGTAGTAC 57.103 45.455 0.00 0.00 0.00 2.73
6740 6972 4.337555 GGAACTCGGCTGTCTTATGTAGTA 59.662 45.833 0.00 0.00 0.00 1.82
6741 6973 3.130693 GGAACTCGGCTGTCTTATGTAGT 59.869 47.826 0.00 0.00 0.00 2.73
6742 6974 3.130516 TGGAACTCGGCTGTCTTATGTAG 59.869 47.826 0.00 0.00 0.00 2.74
6743 6975 3.093814 TGGAACTCGGCTGTCTTATGTA 58.906 45.455 0.00 0.00 0.00 2.29
6744 6976 1.899814 TGGAACTCGGCTGTCTTATGT 59.100 47.619 0.00 0.00 0.00 2.29
6745 6977 2.672961 TGGAACTCGGCTGTCTTATG 57.327 50.000 0.00 0.00 0.00 1.90
6746 6978 3.535561 CATTGGAACTCGGCTGTCTTAT 58.464 45.455 0.00 0.00 0.00 1.73
6747 6979 2.354704 CCATTGGAACTCGGCTGTCTTA 60.355 50.000 0.00 0.00 0.00 2.10
6748 6980 1.611673 CCATTGGAACTCGGCTGTCTT 60.612 52.381 0.00 0.00 0.00 3.01
6749 6981 0.036010 CCATTGGAACTCGGCTGTCT 60.036 55.000 0.00 0.00 0.00 3.41
6750 6982 0.321653 ACCATTGGAACTCGGCTGTC 60.322 55.000 10.37 0.00 0.00 3.51
6751 6983 0.981183 TACCATTGGAACTCGGCTGT 59.019 50.000 10.37 0.00 0.00 4.40
6752 6984 2.107950 TTACCATTGGAACTCGGCTG 57.892 50.000 10.37 0.00 0.00 4.85
6753 6985 3.366052 AATTACCATTGGAACTCGGCT 57.634 42.857 10.37 0.00 0.00 5.52
6754 6986 5.106078 TGTTAAATTACCATTGGAACTCGGC 60.106 40.000 10.37 0.00 0.00 5.54
6755 6987 6.503589 TGTTAAATTACCATTGGAACTCGG 57.496 37.500 10.37 0.00 0.00 4.63
6756 6988 7.700656 GGAATGTTAAATTACCATTGGAACTCG 59.299 37.037 10.37 0.00 0.00 4.18
6763 6995 6.972328 CCGTCTGGAATGTTAAATTACCATTG 59.028 38.462 0.45 0.00 37.49 2.82
6764 6996 6.096282 CCCGTCTGGAATGTTAAATTACCATT 59.904 38.462 0.00 0.00 37.49 3.16
6768 7000 6.594937 TGTACCCGTCTGGAATGTTAAATTAC 59.405 38.462 0.00 0.00 37.49 1.89
6790 7022 4.780554 TCTGATGTACCCTGGTTGATTGTA 59.219 41.667 0.00 0.00 0.00 2.41
6831 7063 7.739498 TTACTAATTTCCTTCGGCATATTCC 57.261 36.000 0.00 0.00 0.00 3.01
6836 7068 4.947388 TGCTTTACTAATTTCCTTCGGCAT 59.053 37.500 0.00 0.00 0.00 4.40
6909 7144 6.166279 TGTTAGAACTCACTATTTCTGCTGG 58.834 40.000 0.00 0.00 33.96 4.85
6963 7198 5.181811 TCAAATGCAGTCTTTGTATGGTCTG 59.818 40.000 10.26 0.00 35.56 3.51
7010 7246 1.817099 CCTGGCGACCTTGAGATGC 60.817 63.158 0.00 0.00 0.00 3.91
7065 7302 5.740406 CAAGGCACTGTTTTAATTTGCTTG 58.260 37.500 0.00 0.00 40.86 4.01
7066 7303 4.273235 GCAAGGCACTGTTTTAATTTGCTT 59.727 37.500 0.00 0.00 40.86 3.91
7067 7304 3.809279 GCAAGGCACTGTTTTAATTTGCT 59.191 39.130 0.00 0.00 40.86 3.91
7068 7305 3.559242 TGCAAGGCACTGTTTTAATTTGC 59.441 39.130 0.00 0.00 40.86 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.