Multiple sequence alignment - TraesCS4A01G199900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G199900 chr4A 100.000 3872 0 0 1 3872 487915374 487919245 0.000000e+00 7151
1 TraesCS4A01G199900 chr4A 79.809 1045 183 23 975 2005 488248827 488249857 0.000000e+00 736
2 TraesCS4A01G199900 chr4A 92.722 316 21 2 1 315 706246727 706246413 4.560000e-124 455
3 TraesCS4A01G199900 chr4A 82.127 442 71 8 2450 2888 488250573 488251009 4.720000e-99 372
4 TraesCS4A01G199900 chr4A 75.193 649 124 30 1505 2132 478191415 478192047 4.930000e-69 272
5 TraesCS4A01G199900 chr4D 95.733 2250 70 14 845 3075 93761662 93759420 0.000000e+00 3600
6 TraesCS4A01G199900 chr4D 79.844 1409 244 29 975 2358 93612889 93611496 0.000000e+00 992
7 TraesCS4A01G199900 chr4D 91.803 305 22 3 1 305 438220731 438221032 4.630000e-114 422
8 TraesCS4A01G199900 chr4D 78.931 655 108 23 1295 1940 97969994 97969361 5.980000e-113 418
9 TraesCS4A01G199900 chr4D 94.821 251 13 0 3338 3588 93759124 93758874 3.630000e-105 392
10 TraesCS4A01G199900 chr4D 82.420 438 73 4 2453 2888 93611094 93610659 2.820000e-101 379
11 TraesCS4A01G199900 chr4D 93.421 228 8 5 2958 3182 93759343 93759120 8.020000e-87 331
12 TraesCS4A01G199900 chr4D 76.235 648 117 29 1505 2132 98015414 98014784 3.760000e-80 309
13 TraesCS4A01G199900 chr4D 73.742 636 135 26 1515 2131 435198741 435198119 1.810000e-53 220
14 TraesCS4A01G199900 chr4D 88.024 167 20 0 1287 1453 98015584 98015418 8.490000e-47 198
15 TraesCS4A01G199900 chr4D 86.826 167 22 0 1287 1453 435198921 435198755 1.840000e-43 187
16 TraesCS4A01G199900 chr4D 89.796 98 6 2 3059 3152 93610403 93610306 5.250000e-24 122
17 TraesCS4A01G199900 chr4B 96.328 1661 40 10 847 2498 132295396 132293748 0.000000e+00 2710
18 TraesCS4A01G199900 chr4B 91.211 842 71 3 1 840 417220685 417219845 0.000000e+00 1142
19 TraesCS4A01G199900 chr4B 96.094 640 20 1 2543 3182 132293750 132293116 0.000000e+00 1038
20 TraesCS4A01G199900 chr4B 93.581 296 16 2 3340 3634 132293118 132292825 4.590000e-119 438
21 TraesCS4A01G199900 chr4B 78.811 656 109 21 1294 1940 139571956 139571322 7.740000e-112 414
22 TraesCS4A01G199900 chr4B 82.299 435 71 6 2457 2888 132054945 132054514 4.720000e-99 372
23 TraesCS4A01G199900 chr4B 74.961 647 127 27 1505 2132 139593656 139593026 8.250000e-67 265
24 TraesCS4A01G199900 chr4B 89.840 187 19 0 3686 3872 434655195 434655381 1.390000e-59 241
25 TraesCS4A01G199900 chr4B 74.451 364 78 13 1505 1859 535346613 535346256 4.030000e-30 143
26 TraesCS4A01G199900 chr7B 90.898 846 73 4 1 843 724481641 724482485 0.000000e+00 1133
27 TraesCS4A01G199900 chr7B 90.573 838 76 3 1 836 591970909 591970073 0.000000e+00 1107
28 TraesCS4A01G199900 chr7B 85.661 537 74 3 307 840 747328786 747328250 2.610000e-156 562
29 TraesCS4A01G199900 chr3A 89.623 530 50 4 313 840 725123833 725123307 0.000000e+00 669
30 TraesCS4A01G199900 chr2D 86.406 537 71 2 307 841 53583696 53583160 1.550000e-163 586
31 TraesCS4A01G199900 chr2D 93.631 157 7 2 3177 3331 391461478 391461633 8.370000e-57 231
32 TraesCS4A01G199900 chr2D 81.053 190 34 1 3685 3872 430174096 430174285 2.410000e-32 150
33 TraesCS4A01G199900 chr6B 87.892 446 51 3 307 750 140848249 140847805 4.430000e-144 521
34 TraesCS4A01G199900 chr6B 93.407 182 12 0 3691 3872 676217570 676217389 1.770000e-68 270
35 TraesCS4A01G199900 chr6B 92.350 183 13 1 3691 3872 213378732 213378914 3.840000e-65 259
36 TraesCS4A01G199900 chr6B 74.513 616 121 31 1279 1870 255279667 255279064 6.470000e-58 235
37 TraesCS4A01G199900 chr2B 94.006 317 16 2 1 315 748705586 748705901 9.730000e-131 477
38 TraesCS4A01G199900 chr2B 94.054 185 10 1 3686 3869 33949825 33950009 2.950000e-71 279
39 TraesCS4A01G199900 chr2B 94.268 157 6 2 3177 3331 296085731 296085576 1.800000e-58 237
40 TraesCS4A01G199900 chr2B 92.994 157 8 3 3177 3331 785535368 785535523 3.890000e-55 226
41 TraesCS4A01G199900 chr2B 90.698 172 10 6 3163 3331 234277573 234277741 1.400000e-54 224
42 TraesCS4A01G199900 chr1B 92.405 316 22 2 1 315 307226289 307226603 2.120000e-122 449
43 TraesCS4A01G199900 chr3B 91.798 317 23 2 1 315 68895397 68895082 4.590000e-119 438
44 TraesCS4A01G199900 chr3B 93.750 192 10 2 3682 3872 145378128 145377938 1.760000e-73 287
45 TraesCS4A01G199900 chr5B 90.881 318 25 3 1 315 279107261 279107577 1.290000e-114 424
46 TraesCS4A01G199900 chr5B 86.478 318 41 2 525 841 699389515 699389831 7.960000e-92 348
47 TraesCS4A01G199900 chr5B 89.286 196 18 3 307 500 699389207 699389401 3.860000e-60 243
48 TraesCS4A01G199900 chr5B 92.994 157 8 3 3177 3331 70355 70510 3.890000e-55 226
49 TraesCS4A01G199900 chr5B 86.413 184 21 3 3691 3872 531933924 531933743 8.490000e-47 198
50 TraesCS4A01G199900 chr2A 77.594 665 108 26 1292 1940 32497357 32497996 7.910000e-97 364
51 TraesCS4A01G199900 chr2A 88.718 195 21 1 307 500 12318726 12318920 1.800000e-58 237
52 TraesCS4A01G199900 chr1D 87.255 306 37 2 525 829 52679017 52678713 7.960000e-92 348
53 TraesCS4A01G199900 chr1D 93.631 157 7 2 3177 3331 12318370 12318525 8.370000e-57 231
54 TraesCS4A01G199900 chr5A 97.312 186 5 0 3687 3872 446843087 446842902 2.250000e-82 316
55 TraesCS4A01G199900 chr6D 75.654 612 100 34 1279 1870 143413639 143413057 3.840000e-65 259
56 TraesCS4A01G199900 chr7A 93.038 158 7 3 3177 3331 14929819 14929663 1.080000e-55 228
57 TraesCS4A01G199900 chr7D 92.994 157 8 2 3177 3331 627022937 627023092 3.890000e-55 226
58 TraesCS4A01G199900 chr5D 92.994 157 8 2 3177 3331 336414087 336413932 3.890000e-55 226
59 TraesCS4A01G199900 chr5D 80.108 186 37 0 3687 3872 35125302 35125117 5.220000e-29 139
60 TraesCS4A01G199900 chr3D 79.245 159 29 4 2204 2360 44210089 44210245 1.470000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G199900 chr4A 487915374 487919245 3871 False 7151.000000 7151 100.000000 1 3872 1 chr4A.!!$F2 3871
1 TraesCS4A01G199900 chr4A 488248827 488251009 2182 False 554.000000 736 80.968000 975 2888 2 chr4A.!!$F3 1913
2 TraesCS4A01G199900 chr4A 478191415 478192047 632 False 272.000000 272 75.193000 1505 2132 1 chr4A.!!$F1 627
3 TraesCS4A01G199900 chr4D 93758874 93761662 2788 True 1441.000000 3600 94.658333 845 3588 3 chr4D.!!$R3 2743
4 TraesCS4A01G199900 chr4D 93610306 93612889 2583 True 497.666667 992 84.020000 975 3152 3 chr4D.!!$R2 2177
5 TraesCS4A01G199900 chr4D 97969361 97969994 633 True 418.000000 418 78.931000 1295 1940 1 chr4D.!!$R1 645
6 TraesCS4A01G199900 chr4D 98014784 98015584 800 True 253.500000 309 82.129500 1287 2132 2 chr4D.!!$R4 845
7 TraesCS4A01G199900 chr4D 435198119 435198921 802 True 203.500000 220 80.284000 1287 2131 2 chr4D.!!$R5 844
8 TraesCS4A01G199900 chr4B 132292825 132295396 2571 True 1395.333333 2710 95.334333 847 3634 3 chr4B.!!$R6 2787
9 TraesCS4A01G199900 chr4B 417219845 417220685 840 True 1142.000000 1142 91.211000 1 840 1 chr4B.!!$R4 839
10 TraesCS4A01G199900 chr4B 139571322 139571956 634 True 414.000000 414 78.811000 1294 1940 1 chr4B.!!$R2 646
11 TraesCS4A01G199900 chr4B 139593026 139593656 630 True 265.000000 265 74.961000 1505 2132 1 chr4B.!!$R3 627
12 TraesCS4A01G199900 chr7B 724481641 724482485 844 False 1133.000000 1133 90.898000 1 843 1 chr7B.!!$F1 842
13 TraesCS4A01G199900 chr7B 591970073 591970909 836 True 1107.000000 1107 90.573000 1 836 1 chr7B.!!$R1 835
14 TraesCS4A01G199900 chr7B 747328250 747328786 536 True 562.000000 562 85.661000 307 840 1 chr7B.!!$R2 533
15 TraesCS4A01G199900 chr3A 725123307 725123833 526 True 669.000000 669 89.623000 313 840 1 chr3A.!!$R1 527
16 TraesCS4A01G199900 chr2D 53583160 53583696 536 True 586.000000 586 86.406000 307 841 1 chr2D.!!$R1 534
17 TraesCS4A01G199900 chr6B 255279064 255279667 603 True 235.000000 235 74.513000 1279 1870 1 chr6B.!!$R2 591
18 TraesCS4A01G199900 chr5B 699389207 699389831 624 False 295.500000 348 87.882000 307 841 2 chr5B.!!$F3 534
19 TraesCS4A01G199900 chr2A 32497357 32497996 639 False 364.000000 364 77.594000 1292 1940 1 chr2A.!!$F2 648
20 TraesCS4A01G199900 chr6D 143413057 143413639 582 True 259.000000 259 75.654000 1279 1870 1 chr6D.!!$R1 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
535 626 0.105224 TCGACCGCTGTTTCAGGAAA 59.895 50.0 0.0 0.0 31.21 3.13 F
2502 3006 0.524862 CCACAGGCAAGCTCAACATC 59.475 55.0 0.0 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2532 3036 0.035317 TCAGGTGTGACTGGATGCAC 59.965 55.0 0.00 0.0 38.98 4.57 R
3687 4488 0.099968 CTAACGGTCCGCTCATTCGA 59.900 55.0 12.28 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 1.134280 CCATTTCTGGTCGGCTCTCAT 60.134 52.381 0.00 0.00 37.79 2.90
181 182 6.387465 TGAACTGTAGATGTGTAGTTGTAGC 58.613 40.000 0.00 0.00 33.83 3.58
197 198 2.314549 TGTAGCAGGGGATTGGGATTTT 59.685 45.455 0.00 0.00 0.00 1.82
206 207 5.436374 AGGGGATTGGGATTTTTCAGATCTA 59.564 40.000 0.00 0.00 0.00 1.98
258 259 6.373216 TGCAACTAAAATTGGCTCGTTATAGT 59.627 34.615 0.00 0.00 0.00 2.12
300 301 4.905429 TGTAGCTCAAATTTGGCTGTAGA 58.095 39.130 29.21 15.88 36.54 2.59
305 306 4.381292 GCTCAAATTTGGCTGTAGATGCTT 60.381 41.667 17.90 0.00 0.00 3.91
349 350 1.039068 CAACATGGGTCCTGTTGCAA 58.961 50.000 10.20 0.00 44.78 4.08
386 387 8.064814 GCGGCAAAGATGTTGTTTTAATTTTTA 58.935 29.630 0.00 0.00 0.00 1.52
405 406 8.728088 ATTTTTATAACAAGAGTCTTGTTGCG 57.272 30.769 41.80 19.78 42.05 4.85
492 494 2.609459 GACGTATGAAAGATGTGCAGGG 59.391 50.000 0.00 0.00 0.00 4.45
523 571 1.204312 GTTTCTGCAACTCGACCGC 59.796 57.895 0.00 0.00 31.92 5.68
535 626 0.105224 TCGACCGCTGTTTCAGGAAA 59.895 50.000 0.00 0.00 31.21 3.13
539 630 3.187637 CGACCGCTGTTTCAGGAAAATTA 59.812 43.478 0.00 0.00 31.33 1.40
631 722 6.640518 AGTATCGTTGCAGGAAATTAGAGAA 58.359 36.000 0.00 0.00 0.00 2.87
723 815 6.184068 TGTTTCAGGAATTAATGAATCGGGA 58.816 36.000 5.82 0.00 35.47 5.14
740 832 4.742649 AGAGGAGACCGAGCCGCA 62.743 66.667 0.00 0.00 0.00 5.69
757 849 1.355971 GCACGCCAAAAGTAGATCGA 58.644 50.000 0.00 0.00 0.00 3.59
769 861 1.431488 TAGATCGAACGGCTACGCGT 61.431 55.000 19.17 19.17 46.04 6.01
778 870 1.881252 GGCTACGCGTGGGTACATG 60.881 63.158 24.59 2.72 36.67 3.21
786 878 0.951525 CGTGGGTACATGAAACGCCA 60.952 55.000 0.00 4.63 35.58 5.69
787 879 1.459450 GTGGGTACATGAAACGCCAT 58.541 50.000 0.00 0.00 0.00 4.40
788 880 1.400494 GTGGGTACATGAAACGCCATC 59.600 52.381 0.00 0.00 0.00 3.51
789 881 1.003696 TGGGTACATGAAACGCCATCA 59.996 47.619 0.00 0.00 0.00 3.07
791 883 2.097466 GGGTACATGAAACGCCATCAAG 59.903 50.000 0.00 0.00 0.00 3.02
814 907 4.295870 GCGACCGATGTTTCATACAGATA 58.704 43.478 0.00 0.00 40.83 1.98
822 915 3.199071 TGTTTCATACAGATAACCCGGCT 59.801 43.478 0.00 0.00 31.68 5.52
883 976 1.657487 ACTGCGCGAATCGTATCCG 60.657 57.895 12.10 0.00 41.07 4.18
884 977 2.354188 TGCGCGAATCGTATCCGG 60.354 61.111 12.10 0.00 41.07 5.14
954 1047 4.954875 TCGCATTTCAAAAACCCAAATCT 58.045 34.783 0.00 0.00 0.00 2.40
1904 2077 0.871057 GTTCTGCTCAAGTGGCTCAC 59.129 55.000 0.00 0.00 34.10 3.51
2105 2284 2.815647 GGCACGACACCTGCTAGC 60.816 66.667 8.10 8.10 34.84 3.42
2199 2390 6.105333 TGGGTGAACTTTTCTCACAAAATTG 58.895 36.000 5.42 0.00 44.16 2.32
2396 2587 2.370189 ACTTATCTAGCATCACCCCTGC 59.630 50.000 0.00 0.00 39.97 4.85
2423 2623 8.969260 TCTGTAATTCTGTAGATGCATCATTT 57.031 30.769 27.81 10.67 0.00 2.32
2445 2645 9.736023 CATTTTGGAGCTGAATAAGTATTTACC 57.264 33.333 0.00 0.00 0.00 2.85
2499 3003 3.359002 CCCACAGGCAAGCTCAAC 58.641 61.111 0.00 0.00 0.00 3.18
2500 3004 1.529010 CCCACAGGCAAGCTCAACA 60.529 57.895 0.00 0.00 0.00 3.33
2501 3005 0.896940 CCCACAGGCAAGCTCAACAT 60.897 55.000 0.00 0.00 0.00 2.71
2502 3006 0.524862 CCACAGGCAAGCTCAACATC 59.475 55.000 0.00 0.00 0.00 3.06
2503 3007 1.241165 CACAGGCAAGCTCAACATCA 58.759 50.000 0.00 0.00 0.00 3.07
2504 3008 1.610038 CACAGGCAAGCTCAACATCAA 59.390 47.619 0.00 0.00 0.00 2.57
2505 3009 1.884579 ACAGGCAAGCTCAACATCAAG 59.115 47.619 0.00 0.00 0.00 3.02
2506 3010 1.884579 CAGGCAAGCTCAACATCAAGT 59.115 47.619 0.00 0.00 0.00 3.16
2507 3011 2.295349 CAGGCAAGCTCAACATCAAGTT 59.705 45.455 0.00 0.00 42.42 2.66
2508 3012 2.555757 AGGCAAGCTCAACATCAAGTTC 59.444 45.455 0.00 0.00 38.74 3.01
2509 3013 2.555757 GGCAAGCTCAACATCAAGTTCT 59.444 45.455 0.00 0.00 38.74 3.01
2510 3014 3.562505 GCAAGCTCAACATCAAGTTCTG 58.437 45.455 0.00 0.00 38.74 3.02
2511 3015 3.611057 GCAAGCTCAACATCAAGTTCTGG 60.611 47.826 0.00 0.00 38.74 3.86
2512 3016 2.157738 AGCTCAACATCAAGTTCTGGC 58.842 47.619 0.00 0.00 38.74 4.85
2513 3017 1.881973 GCTCAACATCAAGTTCTGGCA 59.118 47.619 0.00 0.00 38.74 4.92
2514 3018 2.351157 GCTCAACATCAAGTTCTGGCAC 60.351 50.000 0.00 0.00 38.74 5.01
2515 3019 1.872952 TCAACATCAAGTTCTGGCACG 59.127 47.619 0.00 0.00 38.74 5.34
2516 3020 1.872952 CAACATCAAGTTCTGGCACGA 59.127 47.619 0.00 0.00 38.74 4.35
2517 3021 1.800805 ACATCAAGTTCTGGCACGAG 58.199 50.000 0.00 0.00 0.00 4.18
2518 3022 1.081892 CATCAAGTTCTGGCACGAGG 58.918 55.000 0.00 0.00 0.00 4.63
2519 3023 0.674895 ATCAAGTTCTGGCACGAGGC 60.675 55.000 0.00 0.00 43.74 4.70
2676 3274 1.790387 CAAAGGGAGCTTCGCTTCG 59.210 57.895 13.19 2.53 46.96 3.79
2854 3452 4.034258 CGTGCACTGCTGCCCTTG 62.034 66.667 16.19 0.00 43.51 3.61
2892 3490 1.271217 GGAGAAGGCCGGTGTTAACTT 60.271 52.381 1.90 0.00 0.00 2.66
2893 3491 2.027837 GGAGAAGGCCGGTGTTAACTTA 60.028 50.000 1.90 0.00 0.00 2.24
2894 3492 3.557686 GGAGAAGGCCGGTGTTAACTTAA 60.558 47.826 1.90 0.00 0.00 1.85
2895 3493 3.405831 AGAAGGCCGGTGTTAACTTAAC 58.594 45.455 1.90 4.90 39.11 2.01
2896 3494 3.072038 AGAAGGCCGGTGTTAACTTAACT 59.928 43.478 1.90 0.00 39.38 2.24
2925 3523 3.132111 TGGAGAGAGGTTTTGGTTTTTGC 59.868 43.478 0.00 0.00 0.00 3.68
2957 3555 4.093998 CCCTTTTGAGTTCATCATCAGACG 59.906 45.833 0.00 0.00 37.89 4.18
3006 3610 5.590530 AAAACATGGTTTGTGCTCTGTTA 57.409 34.783 8.22 0.00 38.99 2.41
3176 3976 4.237724 TCTATGAAAAGTGTGCTCAGTCG 58.762 43.478 0.00 0.00 0.00 4.18
3177 3977 1.581934 TGAAAAGTGTGCTCAGTCGG 58.418 50.000 0.00 0.00 0.00 4.79
3178 3978 1.138069 TGAAAAGTGTGCTCAGTCGGA 59.862 47.619 0.00 0.00 0.00 4.55
3179 3979 2.224281 TGAAAAGTGTGCTCAGTCGGAT 60.224 45.455 0.00 0.00 0.00 4.18
3180 3980 1.800805 AAAGTGTGCTCAGTCGGATG 58.199 50.000 0.00 0.00 0.00 3.51
3181 3981 0.681733 AAGTGTGCTCAGTCGGATGT 59.318 50.000 0.00 0.00 0.00 3.06
3182 3982 0.244994 AGTGTGCTCAGTCGGATGTC 59.755 55.000 0.00 0.00 0.00 3.06
3183 3983 0.038251 GTGTGCTCAGTCGGATGTCA 60.038 55.000 0.00 0.00 0.00 3.58
3184 3984 0.678950 TGTGCTCAGTCGGATGTCAA 59.321 50.000 0.00 0.00 0.00 3.18
3185 3985 1.071605 GTGCTCAGTCGGATGTCAAC 58.928 55.000 0.00 0.00 0.00 3.18
3186 3986 0.037326 TGCTCAGTCGGATGTCAACC 60.037 55.000 0.00 0.00 0.00 3.77
3187 3987 0.037326 GCTCAGTCGGATGTCAACCA 60.037 55.000 0.00 0.00 0.00 3.67
3188 3988 2.001812 CTCAGTCGGATGTCAACCAG 57.998 55.000 0.00 0.00 0.00 4.00
3189 3989 0.608130 TCAGTCGGATGTCAACCAGG 59.392 55.000 0.00 0.00 0.00 4.45
3190 3990 0.321671 CAGTCGGATGTCAACCAGGT 59.678 55.000 0.00 0.00 0.00 4.00
3191 3991 0.608640 AGTCGGATGTCAACCAGGTC 59.391 55.000 0.00 0.00 0.00 3.85
3192 3992 0.391263 GTCGGATGTCAACCAGGTCC 60.391 60.000 0.00 0.00 0.00 4.46
3193 3993 1.078426 CGGATGTCAACCAGGTCCC 60.078 63.158 0.00 0.00 0.00 4.46
3194 3994 1.078426 GGATGTCAACCAGGTCCCG 60.078 63.158 0.00 0.00 0.00 5.14
3195 3995 1.677552 GATGTCAACCAGGTCCCGT 59.322 57.895 0.00 0.00 0.00 5.28
3196 3996 0.036306 GATGTCAACCAGGTCCCGTT 59.964 55.000 0.00 0.00 0.00 4.44
3197 3997 0.476771 ATGTCAACCAGGTCCCGTTT 59.523 50.000 0.00 0.00 0.00 3.60
3198 3998 1.129917 TGTCAACCAGGTCCCGTTTA 58.870 50.000 0.00 0.00 0.00 2.01
3199 3999 1.489649 TGTCAACCAGGTCCCGTTTAA 59.510 47.619 0.00 0.00 0.00 1.52
3200 4000 2.106857 TGTCAACCAGGTCCCGTTTAAT 59.893 45.455 0.00 0.00 0.00 1.40
3201 4001 2.745821 GTCAACCAGGTCCCGTTTAATC 59.254 50.000 0.00 0.00 0.00 1.75
3202 4002 2.089201 CAACCAGGTCCCGTTTAATCC 58.911 52.381 0.00 0.00 0.00 3.01
3203 4003 0.622136 ACCAGGTCCCGTTTAATCCC 59.378 55.000 0.00 0.00 0.00 3.85
3204 4004 0.463116 CCAGGTCCCGTTTAATCCCG 60.463 60.000 0.00 0.00 0.00 5.14
3205 4005 0.251073 CAGGTCCCGTTTAATCCCGT 59.749 55.000 0.00 0.00 0.00 5.28
3206 4006 0.986527 AGGTCCCGTTTAATCCCGTT 59.013 50.000 0.00 0.00 0.00 4.44
3207 4007 1.352017 AGGTCCCGTTTAATCCCGTTT 59.648 47.619 0.00 0.00 0.00 3.60
3208 4008 2.571202 AGGTCCCGTTTAATCCCGTTTA 59.429 45.455 0.00 0.00 0.00 2.01
3209 4009 3.008923 AGGTCCCGTTTAATCCCGTTTAA 59.991 43.478 0.00 0.00 0.00 1.52
3210 4010 3.755905 GGTCCCGTTTAATCCCGTTTAAA 59.244 43.478 0.00 0.00 0.00 1.52
3211 4011 4.217334 GGTCCCGTTTAATCCCGTTTAAAA 59.783 41.667 0.00 0.00 33.96 1.52
3212 4012 5.105797 GGTCCCGTTTAATCCCGTTTAAAAT 60.106 40.000 0.00 0.00 33.96 1.82
3213 4013 6.029607 GTCCCGTTTAATCCCGTTTAAAATC 58.970 40.000 0.00 0.00 33.96 2.17
3214 4014 5.125257 TCCCGTTTAATCCCGTTTAAAATCC 59.875 40.000 0.00 0.00 33.96 3.01
3215 4015 5.105837 CCCGTTTAATCCCGTTTAAAATCCA 60.106 40.000 0.00 0.00 33.96 3.41
3216 4016 5.801444 CCGTTTAATCCCGTTTAAAATCCAC 59.199 40.000 0.00 0.00 33.96 4.02
3217 4017 6.349528 CCGTTTAATCCCGTTTAAAATCCACT 60.350 38.462 0.00 0.00 33.96 4.00
3218 4018 7.085746 CGTTTAATCCCGTTTAAAATCCACTT 58.914 34.615 0.00 0.00 33.96 3.16
3219 4019 8.235905 CGTTTAATCCCGTTTAAAATCCACTTA 58.764 33.333 0.00 0.00 33.96 2.24
3266 4066 8.614469 TTTTGTTTGTTTGAGGAAAATGAACT 57.386 26.923 0.00 0.00 31.70 3.01
3267 4067 9.712305 TTTTGTTTGTTTGAGGAAAATGAACTA 57.288 25.926 0.00 0.00 31.70 2.24
3268 4068 9.883142 TTTGTTTGTTTGAGGAAAATGAACTAT 57.117 25.926 0.00 0.00 31.70 2.12
3269 4069 9.528018 TTGTTTGTTTGAGGAAAATGAACTATC 57.472 29.630 0.00 0.00 31.70 2.08
3270 4070 8.690884 TGTTTGTTTGAGGAAAATGAACTATCA 58.309 29.630 0.00 0.00 40.57 2.15
3271 4071 9.528018 GTTTGTTTGAGGAAAATGAACTATCAA 57.472 29.630 0.00 0.00 39.49 2.57
3272 4072 9.748708 TTTGTTTGAGGAAAATGAACTATCAAG 57.251 29.630 0.00 0.00 39.49 3.02
3273 4073 7.370383 TGTTTGAGGAAAATGAACTATCAAGC 58.630 34.615 0.00 0.00 39.49 4.01
3274 4074 7.231317 TGTTTGAGGAAAATGAACTATCAAGCT 59.769 33.333 0.00 0.00 39.49 3.74
3275 4075 8.730680 GTTTGAGGAAAATGAACTATCAAGCTA 58.269 33.333 0.00 0.00 39.49 3.32
3276 4076 8.498054 TTGAGGAAAATGAACTATCAAGCTAG 57.502 34.615 0.00 0.00 39.49 3.42
3277 4077 6.540189 TGAGGAAAATGAACTATCAAGCTAGC 59.460 38.462 6.62 6.62 39.49 3.42
3278 4078 6.418101 AGGAAAATGAACTATCAAGCTAGCA 58.582 36.000 18.83 0.00 39.49 3.49
3279 4079 6.886459 AGGAAAATGAACTATCAAGCTAGCAA 59.114 34.615 18.83 1.82 39.49 3.91
3280 4080 7.394359 AGGAAAATGAACTATCAAGCTAGCAAA 59.606 33.333 18.83 1.41 39.49 3.68
3281 4081 8.028938 GGAAAATGAACTATCAAGCTAGCAAAA 58.971 33.333 18.83 1.00 39.49 2.44
3282 4082 9.410556 GAAAATGAACTATCAAGCTAGCAAAAA 57.589 29.630 18.83 0.00 39.49 1.94
3303 4103 4.625972 AAATAACTAAACGGGATTGCGG 57.374 40.909 0.00 0.00 0.00 5.69
3304 4104 3.547054 ATAACTAAACGGGATTGCGGA 57.453 42.857 0.00 0.00 0.00 5.54
3305 4105 1.445871 AACTAAACGGGATTGCGGAC 58.554 50.000 0.00 0.00 0.00 4.79
3306 4106 0.738412 ACTAAACGGGATTGCGGACG 60.738 55.000 0.00 0.00 0.00 4.79
3307 4107 0.738412 CTAAACGGGATTGCGGACGT 60.738 55.000 0.00 0.00 41.88 4.34
3308 4108 0.737019 TAAACGGGATTGCGGACGTC 60.737 55.000 7.13 7.13 38.79 4.34
3309 4109 2.718747 AAACGGGATTGCGGACGTCA 62.719 55.000 18.91 0.00 38.79 4.35
3310 4110 2.202878 CGGGATTGCGGACGTCAT 60.203 61.111 18.91 1.23 0.00 3.06
3311 4111 1.813753 CGGGATTGCGGACGTCATT 60.814 57.895 18.91 0.00 0.00 2.57
3312 4112 1.366111 CGGGATTGCGGACGTCATTT 61.366 55.000 18.91 0.00 0.00 2.32
3313 4113 1.658994 GGGATTGCGGACGTCATTTA 58.341 50.000 18.91 0.00 0.00 1.40
3314 4114 2.218603 GGGATTGCGGACGTCATTTAT 58.781 47.619 18.91 5.06 0.00 1.40
3315 4115 2.616842 GGGATTGCGGACGTCATTTATT 59.383 45.455 18.91 0.00 0.00 1.40
3316 4116 3.066203 GGGATTGCGGACGTCATTTATTT 59.934 43.478 18.91 0.00 0.00 1.40
3317 4117 4.035017 GGATTGCGGACGTCATTTATTTG 58.965 43.478 18.91 0.00 0.00 2.32
3318 4118 2.535934 TGCGGACGTCATTTATTTGC 57.464 45.000 18.91 7.92 0.00 3.68
3319 4119 1.131504 TGCGGACGTCATTTATTTGCC 59.868 47.619 18.91 0.00 0.00 4.52
3320 4120 1.131504 GCGGACGTCATTTATTTGCCA 59.868 47.619 18.91 0.00 0.00 4.92
3321 4121 2.780993 CGGACGTCATTTATTTGCCAC 58.219 47.619 18.91 0.00 0.00 5.01
3322 4122 2.418628 CGGACGTCATTTATTTGCCACT 59.581 45.455 18.91 0.00 0.00 4.00
3323 4123 3.119990 CGGACGTCATTTATTTGCCACTT 60.120 43.478 18.91 0.00 0.00 3.16
3324 4124 4.093703 CGGACGTCATTTATTTGCCACTTA 59.906 41.667 18.91 0.00 0.00 2.24
3325 4125 5.329493 GGACGTCATTTATTTGCCACTTAC 58.671 41.667 18.91 0.00 0.00 2.34
3326 4126 5.106475 GGACGTCATTTATTTGCCACTTACA 60.106 40.000 18.91 0.00 0.00 2.41
3327 4127 6.404293 GGACGTCATTTATTTGCCACTTACAT 60.404 38.462 18.91 0.00 0.00 2.29
3328 4128 6.551736 ACGTCATTTATTTGCCACTTACATC 58.448 36.000 0.00 0.00 0.00 3.06
3329 4129 5.971202 CGTCATTTATTTGCCACTTACATCC 59.029 40.000 0.00 0.00 0.00 3.51
3330 4130 6.273071 GTCATTTATTTGCCACTTACATCCC 58.727 40.000 0.00 0.00 0.00 3.85
3331 4131 5.362430 TCATTTATTTGCCACTTACATCCCC 59.638 40.000 0.00 0.00 0.00 4.81
3332 4132 4.601406 TTATTTGCCACTTACATCCCCT 57.399 40.909 0.00 0.00 0.00 4.79
3333 4133 2.507407 TTTGCCACTTACATCCCCTC 57.493 50.000 0.00 0.00 0.00 4.30
3334 4134 1.668826 TTGCCACTTACATCCCCTCT 58.331 50.000 0.00 0.00 0.00 3.69
3335 4135 1.204146 TGCCACTTACATCCCCTCTC 58.796 55.000 0.00 0.00 0.00 3.20
3336 4136 0.105039 GCCACTTACATCCCCTCTCG 59.895 60.000 0.00 0.00 0.00 4.04
3393 4193 5.939883 TGTCAATTTACCATCAGAAGTCAGG 59.060 40.000 0.00 0.00 0.00 3.86
3407 4207 6.045318 CAGAAGTCAGGTATCTTATGTGGTG 58.955 44.000 0.00 0.00 31.10 4.17
3553 4353 1.267121 GTCCAGACAGGAAGTGGCTA 58.733 55.000 0.00 0.00 46.16 3.93
3557 4357 2.237143 CCAGACAGGAAGTGGCTATTGA 59.763 50.000 0.00 0.00 46.16 2.57
3597 4398 6.094048 TGGAGTATTGTGAAAATAAGCTCAGC 59.906 38.462 0.00 0.00 0.00 4.26
3622 4423 7.861372 GCAGAACAAATATTCAGAGAATGATGG 59.139 37.037 2.65 0.00 37.89 3.51
3634 4435 6.264970 TCAGAGAATGATGGATGTGTAGAGAG 59.735 42.308 0.00 0.00 31.12 3.20
3635 4436 6.040729 CAGAGAATGATGGATGTGTAGAGAGT 59.959 42.308 0.00 0.00 0.00 3.24
3636 4437 6.610830 AGAGAATGATGGATGTGTAGAGAGTT 59.389 38.462 0.00 0.00 0.00 3.01
3637 4438 7.782168 AGAGAATGATGGATGTGTAGAGAGTTA 59.218 37.037 0.00 0.00 0.00 2.24
3638 4439 8.311395 AGAATGATGGATGTGTAGAGAGTTAA 57.689 34.615 0.00 0.00 0.00 2.01
3639 4440 8.762645 AGAATGATGGATGTGTAGAGAGTTAAA 58.237 33.333 0.00 0.00 0.00 1.52
3640 4441 9.553064 GAATGATGGATGTGTAGAGAGTTAAAT 57.447 33.333 0.00 0.00 0.00 1.40
3641 4442 8.899427 ATGATGGATGTGTAGAGAGTTAAATG 57.101 34.615 0.00 0.00 0.00 2.32
3642 4443 8.078060 TGATGGATGTGTAGAGAGTTAAATGA 57.922 34.615 0.00 0.00 0.00 2.57
3643 4444 8.708378 TGATGGATGTGTAGAGAGTTAAATGAT 58.292 33.333 0.00 0.00 0.00 2.45
3644 4445 9.202273 GATGGATGTGTAGAGAGTTAAATGATC 57.798 37.037 0.00 0.00 0.00 2.92
3645 4446 8.078060 TGGATGTGTAGAGAGTTAAATGATCA 57.922 34.615 0.00 0.00 0.00 2.92
3646 4447 7.981789 TGGATGTGTAGAGAGTTAAATGATCAC 59.018 37.037 0.00 0.00 0.00 3.06
3647 4448 7.981789 GGATGTGTAGAGAGTTAAATGATCACA 59.018 37.037 0.00 0.00 36.72 3.58
3648 4449 8.939201 ATGTGTAGAGAGTTAAATGATCACAG 57.061 34.615 0.00 0.00 35.97 3.66
3649 4450 6.813649 TGTGTAGAGAGTTAAATGATCACAGC 59.186 38.462 0.00 0.00 0.00 4.40
3650 4451 7.038659 GTGTAGAGAGTTAAATGATCACAGCT 58.961 38.462 0.00 0.00 0.00 4.24
3651 4452 7.221838 GTGTAGAGAGTTAAATGATCACAGCTC 59.778 40.741 0.00 3.64 0.00 4.09
3652 4453 6.543430 AGAGAGTTAAATGATCACAGCTCT 57.457 37.500 15.58 15.58 35.13 4.09
3653 4454 6.572519 AGAGAGTTAAATGATCACAGCTCTC 58.427 40.000 24.89 24.89 44.56 3.20
3654 4455 6.543430 AGAGTTAAATGATCACAGCTCTCT 57.457 37.500 11.89 12.27 0.00 3.10
3655 4456 6.945218 AGAGTTAAATGATCACAGCTCTCTT 58.055 36.000 11.89 0.00 0.00 2.85
3656 4457 7.393216 AGAGTTAAATGATCACAGCTCTCTTT 58.607 34.615 11.89 3.94 0.00 2.52
3657 4458 7.882271 AGAGTTAAATGATCACAGCTCTCTTTT 59.118 33.333 11.89 3.37 0.00 2.27
3658 4459 7.814642 AGTTAAATGATCACAGCTCTCTTTTG 58.185 34.615 0.00 0.00 0.00 2.44
3659 4460 7.446625 AGTTAAATGATCACAGCTCTCTTTTGT 59.553 33.333 0.00 0.00 0.00 2.83
3660 4461 5.624344 AATGATCACAGCTCTCTTTTGTG 57.376 39.130 0.00 0.00 42.65 3.33
3661 4462 3.405831 TGATCACAGCTCTCTTTTGTGG 58.594 45.455 0.00 0.00 41.83 4.17
3662 4463 1.597742 TCACAGCTCTCTTTTGTGGC 58.402 50.000 4.27 0.00 41.83 5.01
3663 4464 0.236711 CACAGCTCTCTTTTGTGGCG 59.763 55.000 0.00 0.00 38.76 5.69
3664 4465 0.106708 ACAGCTCTCTTTTGTGGCGA 59.893 50.000 0.00 0.00 0.00 5.54
3665 4466 0.795085 CAGCTCTCTTTTGTGGCGAG 59.205 55.000 0.00 0.00 0.00 5.03
3666 4467 0.321122 AGCTCTCTTTTGTGGCGAGG 60.321 55.000 0.00 0.00 0.00 4.63
3667 4468 0.603975 GCTCTCTTTTGTGGCGAGGT 60.604 55.000 0.00 0.00 0.00 3.85
3668 4469 1.884235 CTCTCTTTTGTGGCGAGGTT 58.116 50.000 0.00 0.00 0.00 3.50
3669 4470 1.801178 CTCTCTTTTGTGGCGAGGTTC 59.199 52.381 0.00 0.00 0.00 3.62
3670 4471 1.416401 TCTCTTTTGTGGCGAGGTTCT 59.584 47.619 0.00 0.00 0.00 3.01
3671 4472 2.631062 TCTCTTTTGTGGCGAGGTTCTA 59.369 45.455 0.00 0.00 0.00 2.10
3672 4473 3.260884 TCTCTTTTGTGGCGAGGTTCTAT 59.739 43.478 0.00 0.00 0.00 1.98
3673 4474 4.003648 CTCTTTTGTGGCGAGGTTCTATT 58.996 43.478 0.00 0.00 0.00 1.73
3674 4475 3.751175 TCTTTTGTGGCGAGGTTCTATTG 59.249 43.478 0.00 0.00 0.00 1.90
3675 4476 2.107950 TTGTGGCGAGGTTCTATTGG 57.892 50.000 0.00 0.00 0.00 3.16
3676 4477 1.271856 TGTGGCGAGGTTCTATTGGA 58.728 50.000 0.00 0.00 0.00 3.53
3677 4478 1.207089 TGTGGCGAGGTTCTATTGGAG 59.793 52.381 0.00 0.00 0.00 3.86
3678 4479 1.480954 GTGGCGAGGTTCTATTGGAGA 59.519 52.381 0.00 0.00 0.00 3.71
3679 4480 1.757118 TGGCGAGGTTCTATTGGAGAG 59.243 52.381 0.00 0.00 34.93 3.20
3680 4481 2.032620 GGCGAGGTTCTATTGGAGAGA 58.967 52.381 0.00 0.00 34.93 3.10
3681 4482 2.035321 GGCGAGGTTCTATTGGAGAGAG 59.965 54.545 0.00 0.00 34.93 3.20
3682 4483 2.952978 GCGAGGTTCTATTGGAGAGAGA 59.047 50.000 0.00 0.00 34.93 3.10
3683 4484 3.004315 GCGAGGTTCTATTGGAGAGAGAG 59.996 52.174 0.00 0.00 34.93 3.20
3684 4485 4.456535 CGAGGTTCTATTGGAGAGAGAGA 58.543 47.826 0.00 0.00 34.93 3.10
3685 4486 4.515191 CGAGGTTCTATTGGAGAGAGAGAG 59.485 50.000 0.00 0.00 34.93 3.20
3686 4487 5.445964 GAGGTTCTATTGGAGAGAGAGAGT 58.554 45.833 0.00 0.00 34.93 3.24
3687 4488 5.837829 AGGTTCTATTGGAGAGAGAGAGTT 58.162 41.667 0.00 0.00 34.93 3.01
3688 4489 5.891551 AGGTTCTATTGGAGAGAGAGAGTTC 59.108 44.000 0.00 0.00 34.93 3.01
3689 4490 5.220970 GGTTCTATTGGAGAGAGAGAGTTCG 60.221 48.000 0.00 0.00 34.93 3.95
3690 4491 5.360649 TCTATTGGAGAGAGAGAGTTCGA 57.639 43.478 0.00 0.00 0.00 3.71
3691 4492 5.746284 TCTATTGGAGAGAGAGAGTTCGAA 58.254 41.667 0.00 0.00 0.00 3.71
3692 4493 6.361433 TCTATTGGAGAGAGAGAGTTCGAAT 58.639 40.000 0.00 0.00 0.00 3.34
3693 4494 4.710423 TTGGAGAGAGAGAGTTCGAATG 57.290 45.455 0.00 0.00 0.00 2.67
3694 4495 3.956744 TGGAGAGAGAGAGTTCGAATGA 58.043 45.455 0.00 0.00 0.00 2.57
3695 4496 3.944650 TGGAGAGAGAGAGTTCGAATGAG 59.055 47.826 0.00 0.00 0.00 2.90
3696 4497 3.243068 GGAGAGAGAGAGTTCGAATGAGC 60.243 52.174 0.00 0.00 0.00 4.26
3697 4498 2.354510 AGAGAGAGAGTTCGAATGAGCG 59.645 50.000 0.00 0.00 0.00 5.03
3698 4499 1.403679 AGAGAGAGTTCGAATGAGCGG 59.596 52.381 0.00 0.00 0.00 5.52
3699 4500 1.402259 GAGAGAGTTCGAATGAGCGGA 59.598 52.381 0.00 0.00 0.00 5.54
3700 4501 1.133407 AGAGAGTTCGAATGAGCGGAC 59.867 52.381 0.00 0.00 40.05 4.79
3701 4502 0.173708 AGAGTTCGAATGAGCGGACC 59.826 55.000 0.00 0.00 40.63 4.46
3702 4503 1.140407 GAGTTCGAATGAGCGGACCG 61.140 60.000 10.29 10.29 40.63 4.79
3703 4504 1.445582 GTTCGAATGAGCGGACCGT 60.446 57.895 16.73 1.83 33.70 4.83
3704 4505 1.012486 GTTCGAATGAGCGGACCGTT 61.012 55.000 16.73 9.96 33.70 4.44
3705 4506 0.527113 TTCGAATGAGCGGACCGTTA 59.473 50.000 16.73 2.39 0.00 3.18
3706 4507 0.099968 TCGAATGAGCGGACCGTTAG 59.900 55.000 16.73 2.26 0.00 2.34
3707 4508 0.870307 CGAATGAGCGGACCGTTAGG 60.870 60.000 16.73 0.00 45.13 2.69
3708 4509 1.152383 GAATGAGCGGACCGTTAGGC 61.152 60.000 16.73 0.00 42.76 3.93
3709 4510 2.901051 AATGAGCGGACCGTTAGGCG 62.901 60.000 16.73 0.00 42.76 5.52
3713 4514 4.867599 CGGACCGTTAGGCGCTCC 62.868 72.222 7.64 2.99 40.88 4.70
3714 4515 4.525949 GGACCGTTAGGCGCTCCC 62.526 72.222 7.64 0.00 38.95 4.30
3715 4516 4.525949 GACCGTTAGGCGCTCCCC 62.526 72.222 7.64 0.00 42.76 4.81
3718 4519 4.530857 CGTTAGGCGCTCCCCCTG 62.531 72.222 7.64 0.00 33.88 4.45
3719 4520 4.176752 GTTAGGCGCTCCCCCTGG 62.177 72.222 7.64 0.00 33.88 4.45
3720 4521 4.733725 TTAGGCGCTCCCCCTGGT 62.734 66.667 7.64 0.00 33.88 4.00
3783 4584 3.403558 GAGGGCTGGGAGGTGGTC 61.404 72.222 0.00 0.00 0.00 4.02
3805 4606 4.639171 GCGGCGCTAGCTCCTCTC 62.639 72.222 26.86 6.93 44.37 3.20
3806 4607 3.972276 CGGCGCTAGCTCCTCTCC 61.972 72.222 21.02 7.40 44.37 3.71
3807 4608 3.972276 GGCGCTAGCTCCTCTCCG 61.972 72.222 16.70 0.00 44.37 4.63
3808 4609 4.639171 GCGCTAGCTCCTCTCCGC 62.639 72.222 13.93 1.92 41.01 5.54
3809 4610 3.972276 CGCTAGCTCCTCTCCGCC 61.972 72.222 13.93 0.00 0.00 6.13
3810 4611 3.972276 GCTAGCTCCTCTCCGCCG 61.972 72.222 7.70 0.00 0.00 6.46
3811 4612 2.203224 CTAGCTCCTCTCCGCCGA 60.203 66.667 0.00 0.00 0.00 5.54
3812 4613 2.203224 TAGCTCCTCTCCGCCGAG 60.203 66.667 0.00 0.00 37.48 4.63
3860 4661 4.767255 GCTGGCGTCAGTGGGAGG 62.767 72.222 19.84 0.00 42.78 4.30
3866 4667 4.021925 GTCAGTGGGAGGCCGCTT 62.022 66.667 6.40 0.00 0.00 4.68
3867 4668 3.706373 TCAGTGGGAGGCCGCTTC 61.706 66.667 6.40 0.00 0.00 3.86
3868 4669 3.710722 CAGTGGGAGGCCGCTTCT 61.711 66.667 6.40 0.00 0.00 2.85
3869 4670 3.710722 AGTGGGAGGCCGCTTCTG 61.711 66.667 6.40 0.00 0.00 3.02
3870 4671 4.785453 GTGGGAGGCCGCTTCTGG 62.785 72.222 6.40 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.412710 GAACCATATGAGAGCCGACCA 59.587 52.381 3.65 0.00 0.00 4.02
50 51 1.403814 CCGAGCAGAGGAGAACCATA 58.596 55.000 0.00 0.00 38.94 2.74
146 147 6.650807 CACATCTACAGTTCAACACCTACATT 59.349 38.462 0.00 0.00 0.00 2.71
159 160 6.340962 TGCTACAACTACACATCTACAGTT 57.659 37.500 0.00 0.00 0.00 3.16
181 182 3.711863 TCTGAAAAATCCCAATCCCCTG 58.288 45.455 0.00 0.00 0.00 4.45
197 198 7.750229 AGTTTCTGCAACAAATAGATCTGAA 57.250 32.000 5.18 0.00 37.93 3.02
228 229 4.631131 GAGCCAATTTTAGTTGCAAAGGT 58.369 39.130 0.00 0.00 0.00 3.50
235 236 7.970384 TCACTATAACGAGCCAATTTTAGTTG 58.030 34.615 0.00 0.00 0.00 3.16
237 238 7.769044 ACATCACTATAACGAGCCAATTTTAGT 59.231 33.333 0.00 0.00 0.00 2.24
258 259 7.230510 AGCTACAAAAATTCCTACAACACATCA 59.769 33.333 0.00 0.00 0.00 3.07
311 312 2.095461 TGCAAAATTAGCACGGCCATA 58.905 42.857 2.24 0.00 37.02 2.74
349 350 5.723295 ACATCTTTGCCGCATCTAATTTTT 58.277 33.333 0.00 0.00 0.00 1.94
386 387 4.002906 TCCGCAACAAGACTCTTGTTAT 57.997 40.909 28.73 12.27 40.30 1.89
394 395 4.819630 TGTCTAATTTTCCGCAACAAGACT 59.180 37.500 0.00 0.00 34.58 3.24
405 406 9.132521 CACATCTTTCATTGTGTCTAATTTTCC 57.867 33.333 0.00 0.00 38.69 3.13
492 494 6.385033 AGTTGCAGAAACAAGCATCTAATTC 58.615 36.000 0.00 0.00 41.61 2.17
539 630 9.247861 ACCTTGTTGCAAAATCTTATCTTCTAT 57.752 29.630 0.00 0.00 0.00 1.98
574 665 5.181748 AGATCTGGTCTTCTTTGATTTCCG 58.818 41.667 0.00 0.00 31.47 4.30
631 722 1.153549 GCGAGGCGTTCAATCCTCT 60.154 57.895 6.70 0.00 45.12 3.69
677 768 2.288579 ACGGTCGAGTTGCAGAAACATA 60.289 45.455 0.00 0.00 41.61 2.29
723 815 4.742649 TGCGGCTCGGTCTCCTCT 62.743 66.667 0.00 0.00 0.00 3.69
740 832 1.990563 CGTTCGATCTACTTTTGGCGT 59.009 47.619 0.00 0.00 0.00 5.68
769 861 1.003696 TGATGGCGTTTCATGTACCCA 59.996 47.619 0.00 3.53 0.00 4.51
784 876 0.744414 AACATCGGTCGCCTTGATGG 60.744 55.000 13.79 0.00 42.91 3.51
786 878 1.338674 TGAAACATCGGTCGCCTTGAT 60.339 47.619 0.00 0.00 0.00 2.57
787 879 0.034198 TGAAACATCGGTCGCCTTGA 59.966 50.000 0.00 0.00 0.00 3.02
788 880 1.086696 ATGAAACATCGGTCGCCTTG 58.913 50.000 0.00 0.00 0.00 3.61
789 881 2.277084 GTATGAAACATCGGTCGCCTT 58.723 47.619 0.00 0.00 0.00 4.35
791 883 1.593006 CTGTATGAAACATCGGTCGCC 59.407 52.381 0.00 0.00 37.50 5.54
793 885 5.175126 GGTTATCTGTATGAAACATCGGTCG 59.825 44.000 0.00 0.00 37.50 4.79
794 886 5.465724 GGGTTATCTGTATGAAACATCGGTC 59.534 44.000 0.00 0.00 37.50 4.79
795 887 5.365619 GGGTTATCTGTATGAAACATCGGT 58.634 41.667 0.00 0.00 37.50 4.69
796 888 4.447724 CGGGTTATCTGTATGAAACATCGG 59.552 45.833 0.00 0.00 37.50 4.18
844 937 1.480545 GTGCTTCTTTGTGGGTGGTTT 59.519 47.619 0.00 0.00 0.00 3.27
845 938 1.111277 GTGCTTCTTTGTGGGTGGTT 58.889 50.000 0.00 0.00 0.00 3.67
854 947 1.723542 CGCGCAGTGTGCTTCTTTG 60.724 57.895 25.10 5.88 42.25 2.77
883 976 0.175989 GAGAAGACGGTGGATGACCC 59.824 60.000 0.00 0.00 42.62 4.46
884 977 0.175989 GGAGAAGACGGTGGATGACC 59.824 60.000 0.00 0.00 42.07 4.02
954 1047 4.697756 CGGCTGCGAGGGTTTGGA 62.698 66.667 0.00 0.00 0.00 3.53
1773 1943 3.934391 CTCGCGGAGGTGTGGGAAC 62.934 68.421 6.13 0.00 0.00 3.62
2105 2284 0.583438 GATGATGGTGTTGCCGATCG 59.417 55.000 8.51 8.51 41.21 3.69
2132 2311 3.149196 TGGAAACTTGTGAGAGCCATTC 58.851 45.455 0.00 0.00 0.00 2.67
2199 2390 3.766691 CCAGCCTGCAATGCACCC 61.767 66.667 2.72 0.00 33.79 4.61
2370 2561 3.898123 GGGTGATGCTAGATAAGTGAGGA 59.102 47.826 0.00 0.00 0.00 3.71
2396 2587 7.958053 TGATGCATCTACAGAATTACAGATG 57.042 36.000 26.32 6.15 44.67 2.90
2423 2623 6.880484 TCGGTAAATACTTATTCAGCTCCAA 58.120 36.000 0.00 0.00 0.00 3.53
2445 2645 5.621197 TGGACTGTAAATTGGTGAAATCG 57.379 39.130 0.00 0.00 0.00 3.34
2495 2999 1.872952 CGTGCCAGAACTTGATGTTGA 59.127 47.619 0.00 0.00 39.30 3.18
2496 3000 1.872952 TCGTGCCAGAACTTGATGTTG 59.127 47.619 0.00 0.00 39.30 3.33
2497 3001 2.146342 CTCGTGCCAGAACTTGATGTT 58.854 47.619 0.00 0.00 42.38 2.71
2498 3002 1.609061 CCTCGTGCCAGAACTTGATGT 60.609 52.381 0.00 0.00 0.00 3.06
2499 3003 1.081892 CCTCGTGCCAGAACTTGATG 58.918 55.000 0.00 0.00 0.00 3.07
2500 3004 0.674895 GCCTCGTGCCAGAACTTGAT 60.675 55.000 0.00 0.00 0.00 2.57
2501 3005 1.301716 GCCTCGTGCCAGAACTTGA 60.302 57.895 0.00 0.00 0.00 3.02
2502 3006 3.257933 GCCTCGTGCCAGAACTTG 58.742 61.111 0.00 0.00 0.00 3.16
2519 3023 4.758251 TGCACTCGATGGCACCGG 62.758 66.667 0.00 0.00 34.58 5.28
2520 3024 2.512286 ATGCACTCGATGGCACCG 60.512 61.111 12.62 0.00 43.75 4.94
2521 3025 2.182842 GGATGCACTCGATGGCACC 61.183 63.158 12.62 11.88 43.75 5.01
2522 3026 1.434622 CTGGATGCACTCGATGGCAC 61.435 60.000 12.62 7.57 43.75 5.01
2523 3027 1.153309 CTGGATGCACTCGATGGCA 60.153 57.895 12.72 12.72 45.23 4.92
2524 3028 1.153289 ACTGGATGCACTCGATGGC 60.153 57.895 0.00 1.78 0.00 4.40
2525 3029 0.176449 TGACTGGATGCACTCGATGG 59.824 55.000 0.00 0.00 0.00 3.51
2526 3030 1.284657 GTGACTGGATGCACTCGATG 58.715 55.000 0.00 0.00 32.44 3.84
2527 3031 0.897621 TGTGACTGGATGCACTCGAT 59.102 50.000 0.00 0.00 36.05 3.59
2528 3032 0.038251 GTGTGACTGGATGCACTCGA 60.038 55.000 0.00 0.00 36.05 4.04
2529 3033 1.016130 GGTGTGACTGGATGCACTCG 61.016 60.000 0.00 0.00 36.05 4.18
2530 3034 0.322975 AGGTGTGACTGGATGCACTC 59.677 55.000 0.00 0.00 36.05 3.51
2531 3035 0.035881 CAGGTGTGACTGGATGCACT 59.964 55.000 0.00 0.00 36.05 4.40
2532 3036 0.035317 TCAGGTGTGACTGGATGCAC 59.965 55.000 0.00 0.00 38.98 4.57
2533 3037 0.764271 TTCAGGTGTGACTGGATGCA 59.236 50.000 0.00 0.00 38.98 3.96
2534 3038 1.446907 CTTCAGGTGTGACTGGATGC 58.553 55.000 0.00 0.00 38.98 3.91
2771 3369 0.987294 CACCCACTTGTCATCTCCCT 59.013 55.000 0.00 0.00 0.00 4.20
2850 3448 4.379243 ACGACGCAGCCCTCAAGG 62.379 66.667 0.00 0.00 39.47 3.61
2854 3452 3.691744 CTCAGACGACGCAGCCCTC 62.692 68.421 0.00 0.00 0.00 4.30
2892 3490 4.390129 ACCTCTCTCCAAGTCTCAGTTA 57.610 45.455 0.00 0.00 0.00 2.24
2893 3491 3.252554 ACCTCTCTCCAAGTCTCAGTT 57.747 47.619 0.00 0.00 0.00 3.16
2894 3492 2.990740 ACCTCTCTCCAAGTCTCAGT 57.009 50.000 0.00 0.00 0.00 3.41
2895 3493 4.314121 CAAAACCTCTCTCCAAGTCTCAG 58.686 47.826 0.00 0.00 0.00 3.35
2896 3494 3.071602 CCAAAACCTCTCTCCAAGTCTCA 59.928 47.826 0.00 0.00 0.00 3.27
2925 3523 1.607467 CTCAAAAGGGCCCCTGGTG 60.607 63.158 21.43 12.29 32.13 4.17
3172 3972 0.608640 GACCTGGTTGACATCCGACT 59.391 55.000 0.00 0.00 0.00 4.18
3176 3976 1.078426 CGGGACCTGGTTGACATCC 60.078 63.158 0.00 0.00 0.00 3.51
3177 3977 0.036306 AACGGGACCTGGTTGACATC 59.964 55.000 5.03 0.00 0.00 3.06
3178 3978 0.476771 AAACGGGACCTGGTTGACAT 59.523 50.000 1.69 0.00 0.00 3.06
3179 3979 1.129917 TAAACGGGACCTGGTTGACA 58.870 50.000 14.29 0.00 0.00 3.58
3180 3980 2.259266 TTAAACGGGACCTGGTTGAC 57.741 50.000 14.29 0.00 0.00 3.18
3181 3981 2.290450 GGATTAAACGGGACCTGGTTGA 60.290 50.000 14.29 5.87 0.00 3.18
3182 3982 2.089201 GGATTAAACGGGACCTGGTTG 58.911 52.381 14.29 0.00 0.00 3.77
3183 3983 1.005097 GGGATTAAACGGGACCTGGTT 59.995 52.381 9.05 9.05 0.00 3.67
3184 3984 0.622136 GGGATTAAACGGGACCTGGT 59.378 55.000 0.00 0.00 0.00 4.00
3185 3985 0.463116 CGGGATTAAACGGGACCTGG 60.463 60.000 5.03 0.00 0.00 4.45
3186 3986 0.251073 ACGGGATTAAACGGGACCTG 59.749 55.000 0.00 0.00 0.00 4.00
3187 3987 0.986527 AACGGGATTAAACGGGACCT 59.013 50.000 0.00 0.00 0.00 3.85
3188 3988 1.825090 AAACGGGATTAAACGGGACC 58.175 50.000 0.00 0.00 0.00 4.46
3189 3989 5.369685 TTTTAAACGGGATTAAACGGGAC 57.630 39.130 0.00 0.00 35.19 4.46
3190 3990 5.125257 GGATTTTAAACGGGATTAAACGGGA 59.875 40.000 0.00 0.00 35.19 5.14
3191 3991 5.105837 TGGATTTTAAACGGGATTAAACGGG 60.106 40.000 0.00 0.00 35.19 5.28
3192 3992 5.801444 GTGGATTTTAAACGGGATTAAACGG 59.199 40.000 0.00 0.00 35.19 4.44
3193 3993 6.614160 AGTGGATTTTAAACGGGATTAAACG 58.386 36.000 0.00 0.00 35.19 3.60
3240 4040 9.061435 AGTTCATTTTCCTCAAACAAACAAAAA 57.939 25.926 0.00 0.00 29.91 1.94
3241 4041 8.614469 AGTTCATTTTCCTCAAACAAACAAAA 57.386 26.923 0.00 0.00 29.91 2.44
3242 4042 9.883142 ATAGTTCATTTTCCTCAAACAAACAAA 57.117 25.926 0.00 0.00 29.91 2.83
3243 4043 9.528018 GATAGTTCATTTTCCTCAAACAAACAA 57.472 29.630 0.00 0.00 29.91 2.83
3244 4044 8.690884 TGATAGTTCATTTTCCTCAAACAAACA 58.309 29.630 0.00 0.00 29.91 2.83
3245 4045 9.528018 TTGATAGTTCATTTTCCTCAAACAAAC 57.472 29.630 0.00 0.00 0.00 2.93
3246 4046 9.748708 CTTGATAGTTCATTTTCCTCAAACAAA 57.251 29.630 0.00 0.00 0.00 2.83
3247 4047 7.867403 GCTTGATAGTTCATTTTCCTCAAACAA 59.133 33.333 0.00 0.00 0.00 2.83
3248 4048 7.231317 AGCTTGATAGTTCATTTTCCTCAAACA 59.769 33.333 0.00 0.00 0.00 2.83
3249 4049 7.597386 AGCTTGATAGTTCATTTTCCTCAAAC 58.403 34.615 0.00 0.00 0.00 2.93
3250 4050 7.765695 AGCTTGATAGTTCATTTTCCTCAAA 57.234 32.000 0.00 0.00 0.00 2.69
3251 4051 7.066284 GCTAGCTTGATAGTTCATTTTCCTCAA 59.934 37.037 7.70 0.00 0.00 3.02
3252 4052 6.540189 GCTAGCTTGATAGTTCATTTTCCTCA 59.460 38.462 7.70 0.00 0.00 3.86
3253 4053 6.540189 TGCTAGCTTGATAGTTCATTTTCCTC 59.460 38.462 17.23 0.00 0.00 3.71
3254 4054 6.418101 TGCTAGCTTGATAGTTCATTTTCCT 58.582 36.000 17.23 0.00 0.00 3.36
3255 4055 6.683974 TGCTAGCTTGATAGTTCATTTTCC 57.316 37.500 17.23 0.00 0.00 3.13
3256 4056 8.970691 TTTTGCTAGCTTGATAGTTCATTTTC 57.029 30.769 17.23 0.00 0.00 2.29
3280 4080 5.183522 TCCGCAATCCCGTTTAGTTATTTTT 59.816 36.000 0.00 0.00 0.00 1.94
3281 4081 4.701171 TCCGCAATCCCGTTTAGTTATTTT 59.299 37.500 0.00 0.00 0.00 1.82
3282 4082 4.095334 GTCCGCAATCCCGTTTAGTTATTT 59.905 41.667 0.00 0.00 0.00 1.40
3283 4083 3.624410 GTCCGCAATCCCGTTTAGTTATT 59.376 43.478 0.00 0.00 0.00 1.40
3284 4084 3.200483 GTCCGCAATCCCGTTTAGTTAT 58.800 45.455 0.00 0.00 0.00 1.89
3285 4085 2.620242 GTCCGCAATCCCGTTTAGTTA 58.380 47.619 0.00 0.00 0.00 2.24
3286 4086 1.445871 GTCCGCAATCCCGTTTAGTT 58.554 50.000 0.00 0.00 0.00 2.24
3287 4087 0.738412 CGTCCGCAATCCCGTTTAGT 60.738 55.000 0.00 0.00 0.00 2.24
3288 4088 0.738412 ACGTCCGCAATCCCGTTTAG 60.738 55.000 0.00 0.00 0.00 1.85
3289 4089 0.737019 GACGTCCGCAATCCCGTTTA 60.737 55.000 3.51 0.00 33.03 2.01
3290 4090 2.030958 GACGTCCGCAATCCCGTTT 61.031 57.895 3.51 0.00 33.03 3.60
3291 4091 2.433664 GACGTCCGCAATCCCGTT 60.434 61.111 3.51 0.00 33.03 4.44
3292 4092 2.515996 AATGACGTCCGCAATCCCGT 62.516 55.000 14.12 0.00 36.04 5.28
3293 4093 1.366111 AAATGACGTCCGCAATCCCG 61.366 55.000 14.12 0.00 0.00 5.14
3294 4094 1.658994 TAAATGACGTCCGCAATCCC 58.341 50.000 14.12 0.00 0.00 3.85
3295 4095 3.963383 AATAAATGACGTCCGCAATCC 57.037 42.857 14.12 0.00 0.00 3.01
3296 4096 3.482110 GCAAATAAATGACGTCCGCAATC 59.518 43.478 14.12 0.00 0.00 2.67
3297 4097 3.434637 GCAAATAAATGACGTCCGCAAT 58.565 40.909 14.12 0.00 0.00 3.56
3298 4098 2.414824 GGCAAATAAATGACGTCCGCAA 60.415 45.455 14.12 0.00 0.00 4.85
3299 4099 1.131504 GGCAAATAAATGACGTCCGCA 59.868 47.619 14.12 0.00 0.00 5.69
3300 4100 1.131504 TGGCAAATAAATGACGTCCGC 59.868 47.619 14.12 2.76 0.00 5.54
3301 4101 2.418628 AGTGGCAAATAAATGACGTCCG 59.581 45.455 14.12 0.00 0.00 4.79
3302 4102 4.434713 AAGTGGCAAATAAATGACGTCC 57.565 40.909 14.12 0.00 0.00 4.79
3303 4103 5.933790 TGTAAGTGGCAAATAAATGACGTC 58.066 37.500 9.11 9.11 0.00 4.34
3304 4104 5.950758 TGTAAGTGGCAAATAAATGACGT 57.049 34.783 0.00 0.00 0.00 4.34
3305 4105 5.971202 GGATGTAAGTGGCAAATAAATGACG 59.029 40.000 0.00 0.00 0.00 4.35
3306 4106 6.273071 GGGATGTAAGTGGCAAATAAATGAC 58.727 40.000 0.00 0.00 0.00 3.06
3307 4107 5.362430 GGGGATGTAAGTGGCAAATAAATGA 59.638 40.000 0.00 0.00 0.00 2.57
3308 4108 5.363580 AGGGGATGTAAGTGGCAAATAAATG 59.636 40.000 0.00 0.00 0.00 2.32
3309 4109 5.528337 AGGGGATGTAAGTGGCAAATAAAT 58.472 37.500 0.00 0.00 0.00 1.40
3310 4110 4.941713 AGGGGATGTAAGTGGCAAATAAA 58.058 39.130 0.00 0.00 0.00 1.40
3311 4111 4.229582 AGAGGGGATGTAAGTGGCAAATAA 59.770 41.667 0.00 0.00 0.00 1.40
3312 4112 3.785887 AGAGGGGATGTAAGTGGCAAATA 59.214 43.478 0.00 0.00 0.00 1.40
3313 4113 2.582636 AGAGGGGATGTAAGTGGCAAAT 59.417 45.455 0.00 0.00 0.00 2.32
3314 4114 1.992557 AGAGGGGATGTAAGTGGCAAA 59.007 47.619 0.00 0.00 0.00 3.68
3315 4115 1.559682 GAGAGGGGATGTAAGTGGCAA 59.440 52.381 0.00 0.00 0.00 4.52
3316 4116 1.204146 GAGAGGGGATGTAAGTGGCA 58.796 55.000 0.00 0.00 0.00 4.92
3317 4117 0.105039 CGAGAGGGGATGTAAGTGGC 59.895 60.000 0.00 0.00 0.00 5.01
3331 4131 1.903877 AACCAGGGCACATCCGAGAG 61.904 60.000 0.00 0.00 34.94 3.20
3332 4132 1.918293 AACCAGGGCACATCCGAGA 60.918 57.895 0.00 0.00 34.94 4.04
3333 4133 1.746615 CAACCAGGGCACATCCGAG 60.747 63.158 0.00 0.00 34.94 4.63
3334 4134 1.561769 ATCAACCAGGGCACATCCGA 61.562 55.000 0.00 0.00 34.94 4.55
3335 4135 0.680921 AATCAACCAGGGCACATCCG 60.681 55.000 0.00 0.00 34.94 4.18
3336 4136 0.819582 CAATCAACCAGGGCACATCC 59.180 55.000 0.00 0.00 0.00 3.51
3393 4193 7.653713 CCTACTCATCAACACCACATAAGATAC 59.346 40.741 0.00 0.00 0.00 2.24
3407 4207 5.112686 GTCTGTGAATCCCTACTCATCAAC 58.887 45.833 0.00 0.00 0.00 3.18
3597 4398 9.117183 TCCATCATTCTCTGAATATTTGTTCTG 57.883 33.333 0.00 0.00 37.44 3.02
3622 4423 8.932945 TGTGATCATTTAACTCTCTACACATC 57.067 34.615 0.00 0.00 31.31 3.06
3634 4435 7.536622 CACAAAAGAGAGCTGTGATCATTTAAC 59.463 37.037 0.00 0.00 42.48 2.01
3635 4436 7.308770 CCACAAAAGAGAGCTGTGATCATTTAA 60.309 37.037 0.00 0.00 42.48 1.52
3636 4437 6.149973 CCACAAAAGAGAGCTGTGATCATTTA 59.850 38.462 0.00 0.00 42.48 1.40
3637 4438 5.048224 CCACAAAAGAGAGCTGTGATCATTT 60.048 40.000 0.00 0.00 42.48 2.32
3638 4439 4.458295 CCACAAAAGAGAGCTGTGATCATT 59.542 41.667 0.00 0.00 42.48 2.57
3639 4440 4.008330 CCACAAAAGAGAGCTGTGATCAT 58.992 43.478 0.00 0.00 42.48 2.45
3640 4441 3.405831 CCACAAAAGAGAGCTGTGATCA 58.594 45.455 0.00 0.00 42.48 2.92
3641 4442 2.161211 GCCACAAAAGAGAGCTGTGATC 59.839 50.000 0.00 0.00 42.48 2.92
3642 4443 2.157738 GCCACAAAAGAGAGCTGTGAT 58.842 47.619 0.00 0.00 42.48 3.06
3643 4444 1.597742 GCCACAAAAGAGAGCTGTGA 58.402 50.000 0.00 0.00 42.48 3.58
3644 4445 0.236711 CGCCACAAAAGAGAGCTGTG 59.763 55.000 0.00 0.00 40.13 3.66
3645 4446 0.106708 TCGCCACAAAAGAGAGCTGT 59.893 50.000 0.00 0.00 0.00 4.40
3646 4447 0.795085 CTCGCCACAAAAGAGAGCTG 59.205 55.000 0.00 0.00 34.13 4.24
3647 4448 0.321122 CCTCGCCACAAAAGAGAGCT 60.321 55.000 0.00 0.00 34.13 4.09
3648 4449 0.603975 ACCTCGCCACAAAAGAGAGC 60.604 55.000 0.00 0.00 34.13 4.09
3649 4450 1.801178 GAACCTCGCCACAAAAGAGAG 59.199 52.381 0.00 0.00 34.13 3.20
3650 4451 1.416401 AGAACCTCGCCACAAAAGAGA 59.584 47.619 0.00 0.00 34.13 3.10
3651 4452 1.884235 AGAACCTCGCCACAAAAGAG 58.116 50.000 0.00 0.00 0.00 2.85
3652 4453 3.695830 ATAGAACCTCGCCACAAAAGA 57.304 42.857 0.00 0.00 0.00 2.52
3653 4454 3.119849 CCAATAGAACCTCGCCACAAAAG 60.120 47.826 0.00 0.00 0.00 2.27
3654 4455 2.817258 CCAATAGAACCTCGCCACAAAA 59.183 45.455 0.00 0.00 0.00 2.44
3655 4456 2.039216 TCCAATAGAACCTCGCCACAAA 59.961 45.455 0.00 0.00 0.00 2.83
3656 4457 1.626321 TCCAATAGAACCTCGCCACAA 59.374 47.619 0.00 0.00 0.00 3.33
3657 4458 1.207089 CTCCAATAGAACCTCGCCACA 59.793 52.381 0.00 0.00 0.00 4.17
3658 4459 1.480954 TCTCCAATAGAACCTCGCCAC 59.519 52.381 0.00 0.00 0.00 5.01
3659 4460 1.757118 CTCTCCAATAGAACCTCGCCA 59.243 52.381 0.00 0.00 32.46 5.69
3660 4461 2.032620 TCTCTCCAATAGAACCTCGCC 58.967 52.381 0.00 0.00 32.46 5.54
3661 4462 2.952978 TCTCTCTCCAATAGAACCTCGC 59.047 50.000 0.00 0.00 32.46 5.03
3662 4463 4.456535 TCTCTCTCTCCAATAGAACCTCG 58.543 47.826 0.00 0.00 32.46 4.63
3663 4464 5.445964 ACTCTCTCTCTCCAATAGAACCTC 58.554 45.833 0.00 0.00 32.46 3.85
3664 4465 5.466127 ACTCTCTCTCTCCAATAGAACCT 57.534 43.478 0.00 0.00 32.46 3.50
3665 4466 5.220970 CGAACTCTCTCTCTCCAATAGAACC 60.221 48.000 0.00 0.00 32.46 3.62
3666 4467 5.587043 TCGAACTCTCTCTCTCCAATAGAAC 59.413 44.000 0.00 0.00 32.46 3.01
3667 4468 5.746284 TCGAACTCTCTCTCTCCAATAGAA 58.254 41.667 0.00 0.00 32.46 2.10
3668 4469 5.360649 TCGAACTCTCTCTCTCCAATAGA 57.639 43.478 0.00 0.00 0.00 1.98
3669 4470 6.262049 TCATTCGAACTCTCTCTCTCCAATAG 59.738 42.308 0.00 0.00 0.00 1.73
3670 4471 6.122964 TCATTCGAACTCTCTCTCTCCAATA 58.877 40.000 0.00 0.00 0.00 1.90
3671 4472 4.952957 TCATTCGAACTCTCTCTCTCCAAT 59.047 41.667 0.00 0.00 0.00 3.16
3672 4473 4.336280 TCATTCGAACTCTCTCTCTCCAA 58.664 43.478 0.00 0.00 0.00 3.53
3673 4474 3.944650 CTCATTCGAACTCTCTCTCTCCA 59.055 47.826 0.00 0.00 0.00 3.86
3674 4475 3.243068 GCTCATTCGAACTCTCTCTCTCC 60.243 52.174 0.00 0.00 0.00 3.71
3675 4476 3.546020 CGCTCATTCGAACTCTCTCTCTC 60.546 52.174 0.00 0.00 0.00 3.20
3676 4477 2.354510 CGCTCATTCGAACTCTCTCTCT 59.645 50.000 0.00 0.00 0.00 3.10
3677 4478 2.540769 CCGCTCATTCGAACTCTCTCTC 60.541 54.545 0.00 0.00 0.00 3.20
3678 4479 1.403679 CCGCTCATTCGAACTCTCTCT 59.596 52.381 0.00 0.00 0.00 3.10
3679 4480 1.402259 TCCGCTCATTCGAACTCTCTC 59.598 52.381 0.00 0.00 0.00 3.20
3680 4481 1.133407 GTCCGCTCATTCGAACTCTCT 59.867 52.381 0.00 0.00 0.00 3.10
3681 4482 1.551145 GTCCGCTCATTCGAACTCTC 58.449 55.000 0.00 0.00 0.00 3.20
3682 4483 0.173708 GGTCCGCTCATTCGAACTCT 59.826 55.000 0.00 0.00 0.00 3.24
3683 4484 1.140407 CGGTCCGCTCATTCGAACTC 61.140 60.000 0.00 0.00 0.00 3.01
3684 4485 1.153823 CGGTCCGCTCATTCGAACT 60.154 57.895 0.00 0.00 0.00 3.01
3685 4486 1.012486 AACGGTCCGCTCATTCGAAC 61.012 55.000 12.28 0.00 0.00 3.95
3686 4487 0.527113 TAACGGTCCGCTCATTCGAA 59.473 50.000 12.28 0.00 0.00 3.71
3687 4488 0.099968 CTAACGGTCCGCTCATTCGA 59.900 55.000 12.28 0.00 0.00 3.71
3688 4489 0.870307 CCTAACGGTCCGCTCATTCG 60.870 60.000 12.28 0.00 0.00 3.34
3689 4490 1.152383 GCCTAACGGTCCGCTCATTC 61.152 60.000 12.28 0.00 0.00 2.67
3690 4491 1.153429 GCCTAACGGTCCGCTCATT 60.153 57.895 12.28 0.01 0.00 2.57
3691 4492 2.499685 GCCTAACGGTCCGCTCAT 59.500 61.111 12.28 0.00 0.00 2.90
3692 4493 4.124351 CGCCTAACGGTCCGCTCA 62.124 66.667 12.28 0.00 38.44 4.26
3701 4502 4.530857 CAGGGGGAGCGCCTAACG 62.531 72.222 2.29 0.00 45.19 3.18
3702 4503 4.176752 CCAGGGGGAGCGCCTAAC 62.177 72.222 2.29 0.00 45.19 2.34
3703 4504 4.733725 ACCAGGGGGAGCGCCTAA 62.734 66.667 2.29 0.00 45.19 2.69
3766 4567 3.403558 GACCACCTCCCAGCCCTC 61.404 72.222 0.00 0.00 0.00 4.30
3770 4571 4.083862 GTCGGACCACCTCCCAGC 62.084 72.222 0.00 0.00 35.21 4.85
3771 4572 3.760035 CGTCGGACCACCTCCCAG 61.760 72.222 1.91 0.00 35.21 4.45
3788 4589 4.639171 GAGAGGAGCTAGCGCCGC 62.639 72.222 29.13 29.13 40.92 6.53
3789 4590 3.972276 GGAGAGGAGCTAGCGCCG 61.972 72.222 28.76 0.00 40.92 6.46
3790 4591 3.972276 CGGAGAGGAGCTAGCGCC 61.972 72.222 28.28 28.28 36.60 6.53
3791 4592 4.639171 GCGGAGAGGAGCTAGCGC 62.639 72.222 10.35 10.35 0.00 5.92
3792 4593 3.972276 GGCGGAGAGGAGCTAGCG 61.972 72.222 9.55 0.00 32.90 4.26
3793 4594 3.972276 CGGCGGAGAGGAGCTAGC 61.972 72.222 6.62 6.62 0.00 3.42
3794 4595 2.203224 TCGGCGGAGAGGAGCTAG 60.203 66.667 7.21 0.00 0.00 3.42
3795 4596 2.203224 CTCGGCGGAGAGGAGCTA 60.203 66.667 15.82 0.00 43.27 3.32
3843 4644 4.767255 CCTCCCACTGACGCCAGC 62.767 72.222 0.00 0.00 44.16 4.85
3844 4645 4.767255 GCCTCCCACTGACGCCAG 62.767 72.222 0.00 0.00 45.76 4.85
3849 4650 3.959991 GAAGCGGCCTCCCACTGAC 62.960 68.421 0.00 0.00 0.00 3.51
3850 4651 3.706373 GAAGCGGCCTCCCACTGA 61.706 66.667 0.00 0.00 0.00 3.41
3851 4652 3.710722 AGAAGCGGCCTCCCACTG 61.711 66.667 0.00 0.00 0.00 3.66
3852 4653 3.710722 CAGAAGCGGCCTCCCACT 61.711 66.667 0.00 0.00 0.00 4.00
3853 4654 4.785453 CCAGAAGCGGCCTCCCAC 62.785 72.222 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.