Multiple sequence alignment - TraesCS4A01G199300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G199300 chr4A 100.000 5560 0 0 1 5560 486637806 486643365 0.000000e+00 10268
1 TraesCS4A01G199300 chr4A 100.000 617 0 0 5944 6560 486643749 486644365 0.000000e+00 1140
2 TraesCS4A01G199300 chr4A 81.511 741 118 13 3816 4548 487864680 487865409 5.660000e-165 592
3 TraesCS4A01G199300 chr4A 80.946 698 89 31 1984 2648 487862058 487862744 4.540000e-141 512
4 TraesCS4A01G199300 chr4A 76.822 535 83 24 2656 3174 487863663 487864172 5.040000e-66 263
5 TraesCS4A01G199300 chr4A 84.766 256 36 2 3436 3690 487864387 487864640 3.040000e-63 254
6 TraesCS4A01G199300 chr4A 95.960 99 3 1 3209 3307 583713486 583713389 6.810000e-35 159
7 TraesCS4A01G199300 chr4A 92.523 107 7 1 3201 3307 101750483 101750378 1.140000e-32 152
8 TraesCS4A01G199300 chr4B 93.570 2846 120 30 2751 5560 132855693 132852875 0.000000e+00 4183
9 TraesCS4A01G199300 chr4B 93.036 1120 47 8 1561 2655 132856799 132855686 0.000000e+00 1607
10 TraesCS4A01G199300 chr4B 93.147 715 28 8 856 1566 132858965 132858268 0.000000e+00 1029
11 TraesCS4A01G199300 chr4B 90.000 610 45 9 5944 6549 132852835 132852238 0.000000e+00 774
12 TraesCS4A01G199300 chr4B 80.775 697 92 31 1984 2648 132338508 132337822 2.110000e-139 507
13 TraesCS4A01G199300 chr4B 85.441 261 35 3 3431 3690 132336195 132335937 1.080000e-67 268
14 TraesCS4A01G199300 chr4B 76.894 528 79 26 2662 3171 132336918 132336416 6.530000e-65 259
15 TraesCS4A01G199300 chr4B 87.407 135 15 1 246 380 232120153 232120021 3.170000e-33 154
16 TraesCS4A01G199300 chr4D 94.505 2730 74 16 2862 5560 94261239 94258555 0.000000e+00 4141
17 TraesCS4A01G199300 chr4D 94.124 1974 63 16 921 2863 94263314 94261363 0.000000e+00 2953
18 TraesCS4A01G199300 chr4D 81.284 732 119 12 3827 4551 93845566 93844846 1.590000e-160 577
19 TraesCS4A01G199300 chr4D 80.484 702 90 34 1984 2651 93848170 93847482 1.640000e-135 494
20 TraesCS4A01G199300 chr4D 89.437 284 14 7 6158 6441 94258346 94258079 1.750000e-90 344
21 TraesCS4A01G199300 chr4D 97.605 167 4 0 5944 6110 94258514 94258348 2.990000e-73 287
22 TraesCS4A01G199300 chr4D 77.255 510 80 22 2676 3174 93846580 93846096 3.900000e-67 267
23 TraesCS4A01G199300 chr4D 84.291 261 38 2 3431 3690 93845882 93845624 1.090000e-62 252
24 TraesCS4A01G199300 chr3B 93.528 479 28 3 2 480 672761546 672761071 0.000000e+00 710
25 TraesCS4A01G199300 chr3B 89.062 384 37 5 472 854 672760660 672760281 7.700000e-129 472
26 TraesCS4A01G199300 chr3B 95.181 83 2 2 3689 3770 104711994 104712075 5.340000e-26 130
27 TraesCS4A01G199300 chr3B 93.939 66 3 1 175 240 672761445 672761381 1.510000e-16 99
28 TraesCS4A01G199300 chr2B 89.095 486 49 4 3862 4346 511276313 511276795 9.410000e-168 601
29 TraesCS4A01G199300 chr2B 79.211 659 73 34 4777 5409 511277668 511278288 3.690000e-107 399
30 TraesCS4A01G199300 chr2B 85.117 383 46 7 1959 2330 511273353 511273735 1.330000e-101 381
31 TraesCS4A01G199300 chr2B 87.435 191 21 2 3455 3644 511276023 511276211 3.980000e-52 217
32 TraesCS4A01G199300 chr2B 85.149 202 24 6 2867 3066 511275147 511275344 1.120000e-47 202
33 TraesCS4A01G199300 chr2B 91.667 108 7 2 3200 3307 733841868 733841973 1.470000e-31 148
34 TraesCS4A01G199300 chr2D 88.706 487 50 5 3862 4346 433506432 433506915 2.040000e-164 590
35 TraesCS4A01G199300 chr2D 82.008 528 55 18 4910 5411 433507924 433508437 4.730000e-111 412
36 TraesCS4A01G199300 chr2D 86.538 208 23 3 3438 3644 433505985 433506188 2.380000e-54 224
37 TraesCS4A01G199300 chr2D 76.380 453 81 21 2656 3104 433504995 433505425 3.080000e-53 220
38 TraesCS4A01G199300 chr2D 92.754 69 5 0 246 314 20916981 20917049 4.190000e-17 100
39 TraesCS4A01G199300 chr2A 88.477 486 52 4 3862 4346 553487089 553486607 9.480000e-163 584
40 TraesCS4A01G199300 chr2A 81.905 525 55 17 4913 5411 553485543 553485033 2.200000e-109 407
41 TraesCS4A01G199300 chr2A 85.603 257 27 8 597 852 778391234 778391481 1.810000e-65 261
42 TraesCS4A01G199300 chr2A 91.061 179 9 4 367 539 778391082 778391259 1.100000e-57 235
43 TraesCS4A01G199300 chr2A 86.869 198 21 4 3448 3644 553487385 553487192 3.980000e-52 217
44 TraesCS4A01G199300 chr2A 77.719 377 68 15 2744 3116 553488308 553487944 3.980000e-52 217
45 TraesCS4A01G199300 chr1A 86.538 312 31 6 543 852 477726375 477726677 3.790000e-87 333
46 TraesCS4A01G199300 chr7D 92.453 106 7 1 3202 3307 397554912 397555016 4.100000e-32 150
47 TraesCS4A01G199300 chr7D 91.589 107 7 2 3201 3307 578157715 578157611 5.300000e-31 147
48 TraesCS4A01G199300 chr7D 94.048 84 3 2 3688 3770 510397757 510397839 6.910000e-25 126
49 TraesCS4A01G199300 chr5A 91.667 108 7 2 3201 3307 320214238 320214344 1.470000e-31 148
50 TraesCS4A01G199300 chr1B 85.106 141 14 6 3167 3307 531122207 531122074 3.190000e-28 137
51 TraesCS4A01G199300 chr1B 94.118 85 3 2 3687 3770 42053981 42054064 1.920000e-25 128
52 TraesCS4A01G199300 chr1D 95.238 84 2 2 3688 3770 409047138 409047056 1.480000e-26 132
53 TraesCS4A01G199300 chr7A 95.181 83 2 2 3689 3770 664477292 664477211 5.340000e-26 130
54 TraesCS4A01G199300 chr5D 95.181 83 2 2 3689 3770 373214572 373214653 5.340000e-26 130
55 TraesCS4A01G199300 chr5D 94.048 84 3 2 3688 3770 561629999 561630081 6.910000e-25 126
56 TraesCS4A01G199300 chr3D 95.181 83 2 2 3689 3770 436459713 436459794 5.340000e-26 130
57 TraesCS4A01G199300 chr3D 94.118 85 4 1 3686 3770 312907505 312907588 1.920000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G199300 chr4A 486637806 486644365 6559 False 5704.000000 10268 100.000000 1 6560 2 chr4A.!!$F1 6559
1 TraesCS4A01G199300 chr4A 487862058 487865409 3351 False 405.250000 592 81.011250 1984 4548 4 chr4A.!!$F2 2564
2 TraesCS4A01G199300 chr4B 132852238 132858965 6727 True 1898.250000 4183 92.438250 856 6549 4 chr4B.!!$R3 5693
3 TraesCS4A01G199300 chr4B 132335937 132338508 2571 True 344.666667 507 81.036667 1984 3690 3 chr4B.!!$R2 1706
4 TraesCS4A01G199300 chr4D 94258079 94263314 5235 True 1931.250000 4141 93.917750 921 6441 4 chr4D.!!$R2 5520
5 TraesCS4A01G199300 chr4D 93844846 93848170 3324 True 397.500000 577 80.828500 1984 4551 4 chr4D.!!$R1 2567
6 TraesCS4A01G199300 chr3B 672760281 672761546 1265 True 427.000000 710 92.176333 2 854 3 chr3B.!!$R1 852
7 TraesCS4A01G199300 chr2B 511273353 511278288 4935 False 360.000000 601 85.201400 1959 5409 5 chr2B.!!$F2 3450
8 TraesCS4A01G199300 chr2D 433504995 433508437 3442 False 361.500000 590 83.408000 2656 5411 4 chr2D.!!$F2 2755
9 TraesCS4A01G199300 chr2A 553485033 553488308 3275 True 356.250000 584 83.742500 2744 5411 4 chr2A.!!$R1 2667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.385751 ACGTATGAGATCGCCCAGTG 59.614 55.000 0.00 0.00 0.00 3.66 F
360 361 0.529773 GCCAACATATCCTCGTCGCA 60.530 55.000 0.00 0.00 0.00 5.10 F
956 1377 0.683504 ATCCGACGGTTCAGTAGCCT 60.684 55.000 14.79 0.00 0.00 4.58 F
1319 1751 1.080093 CTGCGGCTCTCGGTTTGTA 60.080 57.895 0.00 0.00 39.69 2.41 F
2474 4450 1.909700 TCTTTCTCATTTGCCCGCTT 58.090 45.000 0.00 0.00 0.00 4.68 F
3086 6327 2.233676 TGTACATGATTGCTGTCGGACT 59.766 45.455 9.88 0.00 0.00 3.85 F
4192 8092 1.002659 CCCAATCATATTACGGCCGGA 59.997 52.381 31.76 21.43 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1721 3628 1.004628 ACATGTCAATGCAGGCACCTA 59.995 47.619 0.00 0.00 37.29 3.08 R
1869 3798 2.532843 ACTTGGCATGCAAAGGATTCT 58.467 42.857 33.00 13.54 31.44 2.40 R
2474 4450 1.689813 TGAAGGGTTTCGAGTACTGCA 59.310 47.619 0.00 0.00 36.04 4.41 R
3143 6406 0.527565 AATCGGTGGCAAGCATTCAC 59.472 50.000 0.00 0.00 0.00 3.18 R
3459 7191 5.515626 GCTATTGTCTGTAGGTTACAACGAG 59.484 44.000 0.00 0.00 38.38 4.18 R
4585 8927 3.066190 CACACGAGAGGCCGGGTA 61.066 66.667 2.18 0.00 45.36 3.69 R
6023 10505 0.037590 TGAAAATGCACGCCTACCCT 59.962 50.000 0.00 0.00 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.385751 ACGTATGAGATCGCCCAGTG 59.614 55.000 0.00 0.00 0.00 3.66
60 61 7.008719 CCAGTGTTCTATAATAATGAGATCGCG 59.991 40.741 0.00 0.00 0.00 5.87
76 77 4.602159 CGCAGCCAAAAATGCCAT 57.398 50.000 0.00 0.00 39.30 4.40
107 108 4.605183 AGACTAATGGACAGTGAGCTAGT 58.395 43.478 0.00 0.00 0.00 2.57
226 227 4.521639 TCAGAATCTGCAAGCTGACATTTT 59.478 37.500 5.18 0.00 32.85 1.82
264 265 5.611374 TCTCAGAAAAAGTTGTCGAAGGAT 58.389 37.500 0.00 0.00 0.00 3.24
296 297 4.941263 TGAAGCTACAAAGTTCAGTGTTGT 59.059 37.500 2.81 2.81 38.88 3.32
314 315 6.936900 AGTGTTGTAGTATTGCAGACTGAAAT 59.063 34.615 13.37 13.37 29.23 2.17
329 330 8.078596 GCAGACTGAAATTTTGTTCTATGAAGT 58.921 33.333 6.65 0.00 0.00 3.01
330 331 9.956720 CAGACTGAAATTTTGTTCTATGAAGTT 57.043 29.630 0.00 0.00 0.00 2.66
360 361 0.529773 GCCAACATATCCTCGTCGCA 60.530 55.000 0.00 0.00 0.00 5.10
373 374 3.439293 CTCGTCGCATGTCTACTTGATT 58.561 45.455 0.00 0.00 0.00 2.57
394 395 0.782384 GTAGTTGTGTGTTCTCGCCG 59.218 55.000 0.00 0.00 0.00 6.46
422 423 8.228464 CGTCGAGACTCTGCAACTTTATATATA 58.772 37.037 0.03 0.00 0.00 0.86
423 424 9.332301 GTCGAGACTCTGCAACTTTATATATAC 57.668 37.037 0.03 0.00 0.00 1.47
443 444 1.244816 GTGGGCAGAGTTAACCAACC 58.755 55.000 0.88 0.00 35.05 3.77
447 448 2.093341 GGGCAGAGTTAACCAACCGATA 60.093 50.000 0.88 0.00 35.05 2.92
450 451 3.864003 GCAGAGTTAACCAACCGATAGAC 59.136 47.826 0.88 0.00 35.05 2.59
456 457 3.695830 AACCAACCGATAGACACACAT 57.304 42.857 0.00 0.00 39.76 3.21
484 904 2.682856 TGTTGTCTTGGTTTGCACTCTC 59.317 45.455 0.00 0.00 0.00 3.20
496 916 3.998099 TGCACTCTCATTATCCTCTCG 57.002 47.619 0.00 0.00 0.00 4.04
545 965 6.025707 CTGAAAGTTTAGTGGATTCGATCG 57.974 41.667 9.36 9.36 0.00 3.69
549 969 6.830114 AAGTTTAGTGGATTCGATCGATTC 57.170 37.500 24.82 24.82 0.00 2.52
564 984 8.465273 TCGATCGATTCATCCCTATATGTAAT 57.535 34.615 15.15 0.00 0.00 1.89
579 999 9.976511 CCTATATGTAATTGAAGGTTTAGTCGA 57.023 33.333 0.00 0.00 0.00 4.20
674 1094 7.053498 TGCTGCTCAGTTATTTTCATACCATA 58.947 34.615 0.00 0.00 0.00 2.74
675 1095 7.012327 TGCTGCTCAGTTATTTTCATACCATAC 59.988 37.037 0.00 0.00 0.00 2.39
730 1150 9.378504 TGCAAATGTATTTATTAGATGGGGATT 57.621 29.630 0.00 0.00 0.00 3.01
744 1164 6.360618 AGATGGGGATTTCACTTATTCTCAC 58.639 40.000 0.00 0.00 0.00 3.51
777 1197 8.882415 ATGCTAAAATTGATGAAATGTCCATC 57.118 30.769 0.00 0.00 40.48 3.51
814 1234 5.524971 CCATAGTGGAACGTGGTAGATTA 57.475 43.478 0.00 0.00 45.86 1.75
827 1247 5.395611 GTGGTAGATTATAGGTGGGACTCT 58.604 45.833 0.00 0.00 0.00 3.24
828 1248 6.550163 GTGGTAGATTATAGGTGGGACTCTA 58.450 44.000 0.00 0.00 0.00 2.43
829 1249 6.660094 GTGGTAGATTATAGGTGGGACTCTAG 59.340 46.154 0.00 0.00 0.00 2.43
830 1250 6.189133 GGTAGATTATAGGTGGGACTCTAGG 58.811 48.000 0.00 0.00 0.00 3.02
831 1251 5.952161 AGATTATAGGTGGGACTCTAGGT 57.048 43.478 0.00 0.00 0.00 3.08
832 1252 5.646215 AGATTATAGGTGGGACTCTAGGTG 58.354 45.833 0.00 0.00 0.00 4.00
833 1253 2.777459 ATAGGTGGGACTCTAGGTGG 57.223 55.000 0.00 0.00 0.00 4.61
854 1274 4.007644 TCCCACCTGCAGCGTGAG 62.008 66.667 27.05 18.79 32.77 3.51
887 1307 4.517285 TGAGCAAGGAGTATGATTGTTCC 58.483 43.478 0.00 0.00 34.44 3.62
913 1334 1.754234 GACTCATGGCGGGGCAAAT 60.754 57.895 0.00 0.00 0.00 2.32
914 1335 1.728490 GACTCATGGCGGGGCAAATC 61.728 60.000 0.00 0.00 0.00 2.17
915 1336 2.828095 TCATGGCGGGGCAAATCG 60.828 61.111 0.00 0.00 0.00 3.34
916 1337 3.903282 CATGGCGGGGCAAATCGG 61.903 66.667 0.00 0.00 0.00 4.18
919 1340 4.894896 GGCGGGGCAAATCGGGAT 62.895 66.667 0.00 0.00 0.00 3.85
956 1377 0.683504 ATCCGACGGTTCAGTAGCCT 60.684 55.000 14.79 0.00 0.00 4.58
1262 1691 4.509600 GGTTCTGATCTGATCCGATTTGTC 59.490 45.833 14.71 3.72 0.00 3.18
1269 1698 7.730084 TGATCTGATCCGATTTGTCTATCTTT 58.270 34.615 14.71 0.00 0.00 2.52
1319 1751 1.080093 CTGCGGCTCTCGGTTTGTA 60.080 57.895 0.00 0.00 39.69 2.41
1325 1757 2.478370 CGGCTCTCGGTTTGTACGATTA 60.478 50.000 0.00 0.00 39.89 1.75
1338 1770 7.041644 GGTTTGTACGATTATGCCTGCTAATTA 60.042 37.037 0.00 0.00 0.00 1.40
1433 1865 7.064064 GGAGCTAAATTTACTCGCTTTAATCG 58.936 38.462 10.70 0.00 0.00 3.34
1501 1934 9.705290 AGTTTTGGGTCATTATATGTGTTTTTC 57.295 29.630 0.00 0.00 0.00 2.29
1507 1940 7.148306 GGGTCATTATATGTGTTTTTCGTGACT 60.148 37.037 0.00 0.00 34.34 3.41
1511 1944 3.963383 ATGTGTTTTTCGTGACTGGAC 57.037 42.857 0.00 0.00 0.00 4.02
1672 3579 1.993956 TTGTGTTGGTGCTGGCTAAT 58.006 45.000 0.00 0.00 0.00 1.73
1721 3628 8.836268 TGTTAACTCGTTATCCTTGTAAATGT 57.164 30.769 7.22 0.00 0.00 2.71
2022 3958 6.939730 TGATATTAAGTTTGCAGAGGTGACAA 59.060 34.615 0.00 0.00 0.00 3.18
2027 3968 9.632638 ATTAAGTTTGCAGAGGTGACAATATAT 57.367 29.630 0.00 0.00 0.00 0.86
2321 4264 7.496346 TGGGATGAGACTTAAAGTGTAAGAT 57.504 36.000 7.10 0.00 0.00 2.40
2449 4416 5.225642 AGCTTGATTTCTTTTAAGCAGCAC 58.774 37.500 10.03 0.00 45.90 4.40
2474 4450 1.909700 TCTTTCTCATTTGCCCGCTT 58.090 45.000 0.00 0.00 0.00 4.68
2525 4506 6.739550 GCTTCATGCTCATTTTATTTTGCAAC 59.260 34.615 0.00 0.00 38.95 4.17
2782 5886 9.490379 GGTAGAACAGAAAAGATCAAACTCTAA 57.510 33.333 0.00 0.00 0.00 2.10
2824 5937 5.163652 GCTTTTGTGTCCTTCAAGTACTTGT 60.164 40.000 29.83 0.00 41.16 3.16
2825 5938 5.811399 TTTGTGTCCTTCAAGTACTTGTG 57.189 39.130 29.83 23.18 41.16 3.33
3049 6290 6.658188 ATGATAGACTGGTAAGCCTTACTC 57.342 41.667 13.96 4.65 36.39 2.59
3073 6314 7.880105 TCAAATTTGTATGTGCTTGTACATGA 58.120 30.769 17.47 0.00 41.18 3.07
3086 6327 2.233676 TGTACATGATTGCTGTCGGACT 59.766 45.455 9.88 0.00 0.00 3.85
3138 6401 7.073215 TGGTAGGCAGTATTCTAATATGGGTTT 59.927 37.037 0.00 0.00 0.00 3.27
3143 6406 8.665685 GGCAGTATTCTAATATGGGTTTAATCG 58.334 37.037 0.00 0.00 0.00 3.34
3239 6545 8.074370 CCGTTCCTAAATATAAGCCTTTTTAGC 58.926 37.037 2.82 0.00 32.72 3.09
3370 6676 3.060339 GGTGAATCTTGTTTTGCTTTGCG 60.060 43.478 0.00 0.00 0.00 4.85
3388 6981 2.432146 TGCGGAAGAGATATGCAGTCTT 59.568 45.455 5.93 4.78 33.14 3.01
3389 6982 3.118629 TGCGGAAGAGATATGCAGTCTTT 60.119 43.478 5.93 0.00 30.55 2.52
3390 6983 3.873952 GCGGAAGAGATATGCAGTCTTTT 59.126 43.478 5.93 6.61 30.55 2.27
3391 6984 4.333926 GCGGAAGAGATATGCAGTCTTTTT 59.666 41.667 5.93 4.67 30.55 1.94
3434 7030 3.812053 CCTACAACATAGATCTTGCTGCC 59.188 47.826 0.00 0.00 0.00 4.85
3440 7169 3.117776 ACATAGATCTTGCTGCCCATTGA 60.118 43.478 0.00 0.00 0.00 2.57
3450 7182 2.297033 GCTGCCCATTGAAAGTTCTCAA 59.703 45.455 0.00 3.89 39.56 3.02
3451 7183 3.056322 GCTGCCCATTGAAAGTTCTCAAT 60.056 43.478 7.19 7.19 44.98 2.57
3533 7267 1.814429 TGAAGAAACTCCCAGACCCA 58.186 50.000 0.00 0.00 0.00 4.51
3721 7599 7.444183 TCCTTCCCATAATATAAGAGCGTTTTG 59.556 37.037 0.00 0.00 0.00 2.44
3722 7600 7.444183 CCTTCCCATAATATAAGAGCGTTTTGA 59.556 37.037 0.00 0.00 0.00 2.69
3723 7601 7.724305 TCCCATAATATAAGAGCGTTTTGAC 57.276 36.000 0.00 0.00 0.00 3.18
3724 7602 7.276658 TCCCATAATATAAGAGCGTTTTGACA 58.723 34.615 0.00 0.00 0.00 3.58
3725 7603 7.225931 TCCCATAATATAAGAGCGTTTTGACAC 59.774 37.037 0.00 0.00 0.00 3.67
3726 7604 7.226720 CCCATAATATAAGAGCGTTTTGACACT 59.773 37.037 0.00 0.00 0.00 3.55
3727 7605 9.256477 CCATAATATAAGAGCGTTTTGACACTA 57.744 33.333 0.00 0.00 0.00 2.74
3729 7607 9.811995 ATAATATAAGAGCGTTTTGACACTACA 57.188 29.630 0.00 0.00 0.00 2.74
3730 7608 5.840940 ATAAGAGCGTTTTGACACTACAC 57.159 39.130 0.00 0.00 0.00 2.90
3731 7609 3.454371 AGAGCGTTTTGACACTACACT 57.546 42.857 0.00 0.00 0.00 3.55
3789 7676 3.552890 GGAAATTATTCCGCCAATCTGCC 60.553 47.826 0.00 0.00 45.44 4.85
4062 7960 4.734398 TTTTGTCAATGATGGGTATGCC 57.266 40.909 0.00 0.00 0.00 4.40
4192 8092 1.002659 CCCAATCATATTACGGCCGGA 59.997 52.381 31.76 21.43 0.00 5.14
4315 8216 8.794335 AAGGTTGGTCTCTAGATTTAATTCAC 57.206 34.615 0.00 0.00 0.00 3.18
4353 8255 6.651225 GCACTATTGTACTATTCAATCTCCCC 59.349 42.308 0.00 0.00 36.92 4.81
4493 8413 2.619074 GGTTGCCTAGGTCAAGCAAGAT 60.619 50.000 28.15 0.00 46.40 2.40
4585 8927 1.908619 TGTCAGGAGCATACCATGTGT 59.091 47.619 0.00 0.00 0.00 3.72
4615 8967 2.432874 TCTCGTGTGGAACCTGAAAGAA 59.567 45.455 0.00 0.00 34.36 2.52
4860 9297 4.574828 GCTCTTTGTTGTGAAGTACTCCAA 59.425 41.667 0.00 0.00 0.00 3.53
4905 9342 8.714179 CACCCGTGCTTATATTAATTTCGATTA 58.286 33.333 0.00 0.00 0.00 1.75
5089 9526 3.949754 TCATGGAAATCATCAAGCACCTC 59.050 43.478 0.00 0.00 32.92 3.85
5163 9621 0.961753 CCAAGGTGGAAGCAAAGGAC 59.038 55.000 0.00 0.00 40.96 3.85
5247 9708 7.051000 AGATAGACAAGGATAAAGTGAAAGCC 58.949 38.462 0.00 0.00 0.00 4.35
5283 9744 3.428045 GGAGGAAATCAAAAGGTGATGCG 60.428 47.826 0.00 0.00 46.80 4.73
5970 10452 6.460123 GCAGACTGTAATTTGATATGTTGGGG 60.460 42.308 3.99 0.00 0.00 4.96
6115 10597 4.033358 GTGTGAAATGGAGACTCTTATGCG 59.967 45.833 1.74 0.00 0.00 4.73
6122 10604 3.258372 TGGAGACTCTTATGCGAGTGTTT 59.742 43.478 1.74 0.00 43.91 2.83
6139 10621 0.179097 TTTTGCAGTTTTGACGCCCC 60.179 50.000 0.00 0.00 0.00 5.80
6143 10625 2.978010 AGTTTTGACGCCCCGCTG 60.978 61.111 0.00 0.00 0.00 5.18
6317 10802 5.871396 TGGAACAAGACTACAGAAGAACT 57.129 39.130 0.00 0.00 31.92 3.01
6318 10803 5.844004 TGGAACAAGACTACAGAAGAACTC 58.156 41.667 0.00 0.00 31.92 3.01
6319 10804 5.362717 TGGAACAAGACTACAGAAGAACTCA 59.637 40.000 0.00 0.00 31.92 3.41
6327 10812 3.290308 ACAGAAGAACTCAGCACTACG 57.710 47.619 0.00 0.00 0.00 3.51
6343 10828 2.223735 ACTACGGTTCATGCACTATCCG 60.224 50.000 16.76 16.76 42.94 4.18
6352 10837 1.103803 TGCACTATCCGTCCAGTCTC 58.896 55.000 0.00 0.00 0.00 3.36
6358 10843 0.613292 ATCCGTCCAGTCTCTGCTGT 60.613 55.000 0.00 0.00 34.84 4.40
6359 10844 0.827925 TCCGTCCAGTCTCTGCTGTT 60.828 55.000 0.00 0.00 34.84 3.16
6360 10845 0.034059 CCGTCCAGTCTCTGCTGTTT 59.966 55.000 0.00 0.00 34.84 2.83
6437 10922 8.196802 TCATATAATTTGTCTGAACCAGAACG 57.803 34.615 0.00 0.00 42.46 3.95
6454 10939 2.497107 ACGACAAATACGTATCCCCG 57.503 50.000 8.86 12.16 42.17 5.73
6464 10949 2.766651 TATCCCCGCCACCCACTC 60.767 66.667 0.00 0.00 0.00 3.51
6487 10972 9.289782 ACTCTGGCATTTACTAATGAAATATCC 57.710 33.333 2.25 0.00 43.12 2.59
6493 10978 9.899226 GCATTTACTAATGAAATATCCTTCACC 57.101 33.333 2.25 0.00 43.12 4.02
6503 10989 7.730084 TGAAATATCCTTCACCATCTGACTAG 58.270 38.462 0.00 0.00 30.31 2.57
6521 11007 6.464222 TGACTAGAAATGGAACGAAATGTCT 58.536 36.000 0.00 0.00 0.00 3.41
6524 11010 7.837863 ACTAGAAATGGAACGAAATGTCTAGA 58.162 34.615 14.09 0.00 40.83 2.43
6525 11011 7.976734 ACTAGAAATGGAACGAAATGTCTAGAG 59.023 37.037 14.09 0.00 40.83 2.43
6527 11013 5.677319 AATGGAACGAAATGTCTAGAGGA 57.323 39.130 0.00 0.00 0.00 3.71
6528 11014 4.451629 TGGAACGAAATGTCTAGAGGAC 57.548 45.455 0.00 0.00 44.70 3.85
6538 11024 2.920524 GTCTAGAGGACGTCAGGATCA 58.079 52.381 18.91 0.00 35.07 2.92
6539 11025 2.875933 GTCTAGAGGACGTCAGGATCAG 59.124 54.545 18.91 6.36 35.07 2.90
6540 11026 2.158740 TCTAGAGGACGTCAGGATCAGG 60.159 54.545 18.91 6.56 0.00 3.86
6541 11027 1.040339 AGAGGACGTCAGGATCAGGC 61.040 60.000 18.91 0.00 0.00 4.85
6542 11028 1.000993 AGGACGTCAGGATCAGGCT 59.999 57.895 18.91 0.00 0.00 4.58
6543 11029 1.040339 AGGACGTCAGGATCAGGCTC 61.040 60.000 18.91 0.00 0.00 4.70
6545 11031 1.000993 ACGTCAGGATCAGGCTCCT 59.999 57.895 0.00 0.00 46.92 3.69
6547 11033 0.179089 CGTCAGGATCAGGCTCCTTG 60.179 60.000 0.00 0.00 43.33 3.61
6548 11034 1.198713 GTCAGGATCAGGCTCCTTGA 58.801 55.000 0.00 0.00 43.33 3.02
6549 11035 1.767681 GTCAGGATCAGGCTCCTTGAT 59.232 52.381 0.00 0.00 43.33 2.57
6550 11036 2.045524 TCAGGATCAGGCTCCTTGATC 58.954 52.381 14.53 14.53 43.33 2.92
6553 11039 0.399833 GATCAGGCTCCTTGATCCCC 59.600 60.000 13.01 0.00 34.11 4.81
6554 11040 1.414061 ATCAGGCTCCTTGATCCCCG 61.414 60.000 0.00 0.00 0.00 5.73
6555 11041 3.483869 AGGCTCCTTGATCCCCGC 61.484 66.667 0.00 0.00 0.00 6.13
6556 11042 3.797353 GGCTCCTTGATCCCCGCA 61.797 66.667 0.00 0.00 0.00 5.69
6557 11043 2.272146 GCTCCTTGATCCCCGCAA 59.728 61.111 0.00 0.00 0.00 4.85
6558 11044 1.378514 GCTCCTTGATCCCCGCAAA 60.379 57.895 0.00 0.00 0.00 3.68
6559 11045 0.965363 GCTCCTTGATCCCCGCAAAA 60.965 55.000 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.009327 CATACGTAAAAGCCATTTAGTCATTTG 57.991 33.333 0.00 0.00 34.21 2.32
15 16 3.713288 TGGGCGATCTCATACGTAAAAG 58.287 45.455 0.00 0.00 0.00 2.27
25 26 1.847328 TAGAACACTGGGCGATCTCA 58.153 50.000 0.00 0.00 0.00 3.27
39 40 6.507141 GCTGCGCGATCTCATTATTATAGAAC 60.507 42.308 12.10 0.00 0.00 3.01
60 61 6.434018 TTTTATAATGGCATTTTTGGCTGC 57.566 33.333 19.21 0.00 37.66 5.25
90 91 3.580458 AGACAACTAGCTCACTGTCCATT 59.420 43.478 14.92 0.00 39.19 3.16
157 158 8.932434 ACAGATAGCAGAACTCATATAAGAGA 57.068 34.615 11.80 0.00 38.98 3.10
258 259 9.547753 TTTGTAGCTTCATAGAACATATCCTTC 57.452 33.333 0.00 0.00 0.00 3.46
264 265 9.371136 CTGAACTTTGTAGCTTCATAGAACATA 57.629 33.333 15.74 0.00 0.00 2.29
296 297 9.066892 AGAACAAAATTTCAGTCTGCAATACTA 57.933 29.630 0.00 0.00 0.00 1.82
314 315 6.978080 GCCAAGTCAAACTTCATAGAACAAAA 59.022 34.615 0.00 0.00 36.03 2.44
329 330 1.112315 ATGTTGGCCGCCAAGTCAAA 61.112 50.000 25.48 9.18 44.82 2.69
330 331 0.250945 TATGTTGGCCGCCAAGTCAA 60.251 50.000 25.48 11.62 44.82 3.18
373 374 2.351060 CGGCGAGAACACACAACTACTA 60.351 50.000 0.00 0.00 0.00 1.82
394 395 0.238817 AGTTGCAGAGTCTCGACGAC 59.761 55.000 0.00 6.85 43.17 4.34
422 423 0.470766 TTGGTTAACTCTGCCCACGT 59.529 50.000 5.42 0.00 0.00 4.49
423 424 0.872388 GTTGGTTAACTCTGCCCACG 59.128 55.000 5.42 0.00 33.94 4.94
443 444 8.948853 ACAACAATTAAAATGTGTGTCTATCG 57.051 30.769 0.00 0.00 0.00 2.92
447 448 7.706179 CCAAGACAACAATTAAAATGTGTGTCT 59.294 33.333 20.93 20.93 43.17 3.41
450 451 7.769272 ACCAAGACAACAATTAAAATGTGTG 57.231 32.000 0.00 3.13 0.00 3.82
456 457 6.876257 AGTGCAAACCAAGACAACAATTAAAA 59.124 30.769 0.00 0.00 0.00 1.52
528 948 6.128795 GGATGAATCGATCGAATCCACTAAAC 60.129 42.308 29.73 13.14 0.00 2.01
545 965 9.965902 ACCTTCAATTACATATAGGGATGAATC 57.034 33.333 0.00 0.00 0.00 2.52
579 999 9.737427 GTTACATATAGGATGAATCGATCGAAT 57.263 33.333 23.50 14.75 0.00 3.34
580 1000 8.957466 AGTTACATATAGGATGAATCGATCGAA 58.043 33.333 23.50 6.12 0.00 3.71
603 1023 8.091449 CACTTGAGATCTACTAAACCTTCAGTT 58.909 37.037 0.00 0.00 41.81 3.16
717 1137 8.727149 TGAGAATAAGTGAAATCCCCATCTAAT 58.273 33.333 0.00 0.00 0.00 1.73
722 1142 5.194537 AGGTGAGAATAAGTGAAATCCCCAT 59.805 40.000 0.00 0.00 0.00 4.00
730 1150 9.905713 AGCATAAATTAGGTGAGAATAAGTGAA 57.094 29.630 0.00 0.00 0.00 3.18
782 1202 6.764085 CCACGTTCCACTATGGTTTGATATTA 59.236 38.462 0.00 0.00 39.03 0.98
784 1204 5.123227 CCACGTTCCACTATGGTTTGATAT 58.877 41.667 0.00 0.00 39.03 1.63
785 1205 4.020039 ACCACGTTCCACTATGGTTTGATA 60.020 41.667 0.00 0.00 42.98 2.15
790 1210 3.167485 TCTACCACGTTCCACTATGGTT 58.833 45.455 0.00 0.00 42.98 3.67
800 1220 4.586001 TCCCACCTATAATCTACCACGTTC 59.414 45.833 0.00 0.00 0.00 3.95
801 1221 4.343239 GTCCCACCTATAATCTACCACGTT 59.657 45.833 0.00 0.00 0.00 3.99
802 1222 3.893813 GTCCCACCTATAATCTACCACGT 59.106 47.826 0.00 0.00 0.00 4.49
809 1229 5.459831 CCACCTAGAGTCCCACCTATAATCT 60.460 48.000 0.00 0.00 0.00 2.40
814 1234 1.220750 CCCACCTAGAGTCCCACCTAT 59.779 57.143 0.00 0.00 0.00 2.57
832 1252 4.416738 GCTGCAGGTGGGACTCCC 62.417 72.222 17.12 7.25 44.18 4.30
833 1253 4.767255 CGCTGCAGGTGGGACTCC 62.767 72.222 17.12 0.00 43.30 3.85
854 1274 3.791245 CTCCTTGCTCATGGAGTACTTC 58.209 50.000 18.48 0.00 43.77 3.01
876 1296 5.250543 TGAGTCAAGGAAGGGAACAATCATA 59.749 40.000 0.00 0.00 0.00 2.15
887 1307 0.745845 CCGCCATGAGTCAAGGAAGG 60.746 60.000 18.52 15.22 0.00 3.46
933 1354 1.471287 CTACTGAACCGTCGGATCACA 59.529 52.381 19.26 9.87 31.34 3.58
956 1377 3.515286 GGATCGGTCGAGCGTGGA 61.515 66.667 32.99 17.42 0.00 4.02
981 1402 3.807538 GCAGCGTGCACCTGGATG 61.808 66.667 26.44 17.22 44.26 3.51
1269 1698 7.786178 TTGAACAAGAAAAAGAAGATCTCGA 57.214 32.000 0.00 0.00 0.00 4.04
1319 1751 5.409826 GCTCTTAATTAGCAGGCATAATCGT 59.590 40.000 5.34 0.00 39.83 3.73
1325 1757 3.137176 TGGAGCTCTTAATTAGCAGGCAT 59.863 43.478 14.64 0.00 42.62 4.40
1433 1865 9.744468 ATTTTATCATTTTAATAAGCCCGTCAC 57.256 29.630 0.00 0.00 0.00 3.67
1501 1934 3.422417 ACATCTAATCGTCCAGTCACG 57.578 47.619 0.00 0.00 41.36 4.35
1507 1940 8.201464 TGAAATTTAGCTACATCTAATCGTCCA 58.799 33.333 0.00 0.00 0.00 4.02
1672 3579 6.275494 ACATGCAGATCATTCATGAAACAA 57.725 33.333 13.09 1.16 40.69 2.83
1721 3628 1.004628 ACATGTCAATGCAGGCACCTA 59.995 47.619 0.00 0.00 37.29 3.08
1869 3798 2.532843 ACTTGGCATGCAAAGGATTCT 58.467 42.857 33.00 13.54 31.44 2.40
2449 4416 3.983344 CGGGCAAATGAGAAAGAAACAAG 59.017 43.478 0.00 0.00 0.00 3.16
2474 4450 1.689813 TGAAGGGTTTCGAGTACTGCA 59.310 47.619 0.00 0.00 36.04 4.41
2525 4506 3.506455 TGTCCACTAGACTTTCCTTCGAG 59.494 47.826 0.00 0.00 46.46 4.04
2799 5903 4.781934 AGTACTTGAAGGACACAAAAGCT 58.218 39.130 10.65 0.00 0.00 3.74
2824 5937 3.486708 GCGATTCATAAACATTCACGGCA 60.487 43.478 0.00 0.00 0.00 5.69
2825 5938 3.035942 GCGATTCATAAACATTCACGGC 58.964 45.455 0.00 0.00 0.00 5.68
3049 6290 8.692110 ATCATGTACAAGCACATACAAATTTG 57.308 30.769 16.67 16.67 37.02 2.32
3073 6314 7.328737 GTCGAAAATATATAGTCCGACAGCAAT 59.671 37.037 22.05 0.00 42.78 3.56
3138 6401 1.742831 GGTGGCAAGCATTCACGATTA 59.257 47.619 0.00 0.00 32.65 1.75
3143 6406 0.527565 AATCGGTGGCAAGCATTCAC 59.472 50.000 0.00 0.00 0.00 3.18
3262 6568 7.161404 AGTGTAGATTCACTCATTTTGCTACA 58.839 34.615 0.00 0.00 44.07 2.74
3392 6985 6.993308 TGTAGGCTATACACACAACAGAAAAA 59.007 34.615 0.00 0.00 0.00 1.94
3393 6986 6.526526 TGTAGGCTATACACACAACAGAAAA 58.473 36.000 0.00 0.00 0.00 2.29
3397 6990 5.779806 GTTGTAGGCTATACACACAACAG 57.220 43.478 18.88 0.00 45.18 3.16
3440 7169 7.226720 ACAACGAGAACATACATTGAGAACTTT 59.773 33.333 0.00 0.00 0.00 2.66
3450 7182 6.927416 TGTAGGTTACAACGAGAACATACAT 58.073 36.000 7.86 0.00 43.79 2.29
3451 7183 6.207221 TCTGTAGGTTACAACGAGAACATACA 59.793 38.462 10.64 10.64 45.41 2.29
3452 7184 6.525976 GTCTGTAGGTTACAACGAGAACATAC 59.474 42.308 0.00 0.61 41.10 2.39
3453 7185 6.207221 TGTCTGTAGGTTACAACGAGAACATA 59.793 38.462 0.00 0.00 38.38 2.29
3459 7191 5.515626 GCTATTGTCTGTAGGTTACAACGAG 59.484 44.000 0.00 0.00 38.38 4.18
3744 7622 6.726299 TCCCTCTGTCCCATAATATAAGAGTG 59.274 42.308 0.00 0.00 0.00 3.51
3745 7623 6.875469 TCCCTCTGTCCCATAATATAAGAGT 58.125 40.000 0.00 0.00 0.00 3.24
4353 8255 5.985530 TGCGAGGATGTGAAATACTATTCTG 59.014 40.000 0.00 0.00 0.00 3.02
4551 8886 3.378512 TCCTGACATGACATTCCTAGCT 58.621 45.455 0.00 0.00 0.00 3.32
4585 8927 3.066190 CACACGAGAGGCCGGGTA 61.066 66.667 2.18 0.00 45.36 3.69
4860 9297 3.756434 GGTGCTTGGTGTGTGTATGTTAT 59.244 43.478 0.00 0.00 0.00 1.89
4900 9337 8.279103 GCTGACCTCTGAAAAGAATAATAATCG 58.721 37.037 0.00 0.00 0.00 3.34
4905 9342 6.151817 GGTTGCTGACCTCTGAAAAGAATAAT 59.848 38.462 2.97 0.00 45.55 1.28
5089 9526 1.645034 CCTACCATGCTCGACTGTTG 58.355 55.000 0.00 0.00 0.00 3.33
5247 9708 2.730672 CCTCCGTTTCTCAAGCGCG 61.731 63.158 0.00 0.00 0.00 6.86
5283 9744 3.947834 CCATGATGTCAACCTTTCTACCC 59.052 47.826 0.00 0.00 0.00 3.69
5970 10452 8.258708 AGTAGGAGTACATAACAGTTCAAATCC 58.741 37.037 0.00 0.00 0.00 3.01
6023 10505 0.037590 TGAAAATGCACGCCTACCCT 59.962 50.000 0.00 0.00 0.00 4.34
6084 10566 6.547141 AGAGTCTCCATTTCACACAATTTTCA 59.453 34.615 0.00 0.00 0.00 2.69
6115 10597 2.278875 GCGTCAAAACTGCAAAACACTC 59.721 45.455 0.00 0.00 0.00 3.51
6122 10604 2.840066 CGGGGCGTCAAAACTGCAA 61.840 57.895 0.00 0.00 0.00 4.08
6139 10621 0.950836 TCAAACACCCATCAACAGCG 59.049 50.000 0.00 0.00 0.00 5.18
6143 10625 8.658609 CATAAAATTCATCAAACACCCATCAAC 58.341 33.333 0.00 0.00 0.00 3.18
6150 10632 6.817641 TGGATGCATAAAATTCATCAAACACC 59.182 34.615 0.00 0.00 38.58 4.16
6151 10633 7.830940 TGGATGCATAAAATTCATCAAACAC 57.169 32.000 0.00 0.00 38.58 3.32
6275 10757 0.532573 TCATGGCTCGAGTCTTCCAC 59.467 55.000 19.37 0.00 0.00 4.02
6305 10787 4.407818 CGTAGTGCTGAGTTCTTCTGTAG 58.592 47.826 0.00 0.00 0.00 2.74
6313 10798 2.433868 TGAACCGTAGTGCTGAGTTC 57.566 50.000 0.00 0.00 37.83 3.01
6314 10799 2.688507 CATGAACCGTAGTGCTGAGTT 58.311 47.619 0.00 0.00 0.00 3.01
6315 10800 1.673033 GCATGAACCGTAGTGCTGAGT 60.673 52.381 0.00 0.00 34.85 3.41
6316 10801 1.002366 GCATGAACCGTAGTGCTGAG 58.998 55.000 0.00 0.00 34.85 3.35
6317 10802 0.320050 TGCATGAACCGTAGTGCTGA 59.680 50.000 0.00 0.00 38.37 4.26
6318 10803 0.443869 GTGCATGAACCGTAGTGCTG 59.556 55.000 0.00 0.00 38.37 4.41
6319 10804 0.321671 AGTGCATGAACCGTAGTGCT 59.678 50.000 0.00 0.00 38.37 4.40
6327 10812 1.134521 TGGACGGATAGTGCATGAACC 60.135 52.381 0.00 0.00 46.44 3.62
6359 10844 9.617975 GATTCAATTGGTTCAAACAAACAAAAA 57.382 25.926 5.42 0.00 0.00 1.94
6360 10845 8.786898 TGATTCAATTGGTTCAAACAAACAAAA 58.213 25.926 5.42 0.00 0.00 2.44
6364 10849 9.786105 ATTTTGATTCAATTGGTTCAAACAAAC 57.214 25.926 24.15 5.01 37.69 2.93
6412 10897 8.038351 TCGTTCTGGTTCAGACAAATTATATGA 58.962 33.333 0.00 0.00 40.46 2.15
6428 10913 4.866486 GGATACGTATTTGTCGTTCTGGTT 59.134 41.667 9.92 0.00 41.72 3.67
6437 10922 1.202557 TGGCGGGGATACGTATTTGTC 60.203 52.381 9.92 2.59 35.98 3.18
6487 10972 5.982356 TCCATTTCTAGTCAGATGGTGAAG 58.018 41.667 12.63 0.00 36.74 3.02
6493 10978 6.968131 TTTCGTTCCATTTCTAGTCAGATG 57.032 37.500 0.00 0.00 0.00 2.90
6494 10979 7.106239 ACATTTCGTTCCATTTCTAGTCAGAT 58.894 34.615 0.00 0.00 0.00 2.90
6497 10983 6.464222 AGACATTTCGTTCCATTTCTAGTCA 58.536 36.000 0.00 0.00 0.00 3.41
6503 10989 6.036191 GTCCTCTAGACATTTCGTTCCATTTC 59.964 42.308 0.00 0.00 45.55 2.17
6521 11007 1.751032 GCCTGATCCTGACGTCCTCTA 60.751 57.143 14.12 0.00 0.00 2.43
6524 11010 1.000993 AGCCTGATCCTGACGTCCT 59.999 57.895 14.12 0.00 0.00 3.85
6525 11011 1.439644 GAGCCTGATCCTGACGTCC 59.560 63.158 14.12 0.00 0.00 4.79
6527 11013 3.622514 GGAGCCTGATCCTGACGT 58.377 61.111 0.00 0.00 36.35 4.34
6534 11020 0.399833 GGGGATCAAGGAGCCTGATC 59.600 60.000 14.99 14.99 38.31 2.92
6535 11021 1.414061 CGGGGATCAAGGAGCCTGAT 61.414 60.000 0.11 0.00 38.31 2.90
6536 11022 2.066393 CGGGGATCAAGGAGCCTGA 61.066 63.158 0.11 0.00 38.31 3.86
6538 11024 3.483869 GCGGGGATCAAGGAGCCT 61.484 66.667 0.11 0.00 38.31 4.58
6539 11025 2.837031 TTTGCGGGGATCAAGGAGCC 62.837 60.000 0.00 0.00 37.39 4.70
6540 11026 0.965363 TTTTGCGGGGATCAAGGAGC 60.965 55.000 0.00 0.00 0.00 4.70
6541 11027 3.264574 TTTTGCGGGGATCAAGGAG 57.735 52.632 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.