Multiple sequence alignment - TraesCS4A01G198100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G198100 chr4A 100.000 4845 0 0 1 4845 483173530 483178374 0.000000e+00 8948.0
1 TraesCS4A01G198100 chr4A 100.000 30 0 0 4382 4411 483177879 483177908 6.770000e-04 56.5
2 TraesCS4A01G198100 chr4A 100.000 30 0 0 4350 4379 483177911 483177940 6.770000e-04 56.5
3 TraesCS4A01G198100 chr4B 94.976 2886 100 21 1526 4384 136060143 136057276 0.000000e+00 4484.0
4 TraesCS4A01G198100 chr4B 94.072 1535 60 9 5 1521 136061865 136060344 0.000000e+00 2302.0
5 TraesCS4A01G198100 chr4B 88.839 224 22 2 4623 4845 136057133 136056912 6.180000e-69 272.0
6 TraesCS4A01G198100 chr4D 95.295 2827 75 15 1573 4384 96046238 96043455 0.000000e+00 4431.0
7 TraesCS4A01G198100 chr4D 95.635 1489 40 12 1 1469 96047719 96046236 0.000000e+00 2366.0
8 TraesCS4A01G198100 chr5A 91.111 90 8 0 1299 1388 279744962 279745051 6.590000e-24 122.0
9 TraesCS4A01G198100 chr5A 90.000 90 8 1 1572 1661 279745219 279745307 1.100000e-21 115.0
10 TraesCS4A01G198100 chr5D 90.000 90 9 0 1299 1388 214174603 214174692 3.060000e-22 117.0
11 TraesCS4A01G198100 chr5D 90.000 90 8 1 1572 1661 214174865 214174953 1.100000e-21 115.0
12 TraesCS4A01G198100 chr5B 89.362 94 7 1 1295 1388 228818573 228818663 1.100000e-21 115.0
13 TraesCS4A01G198100 chr5B 90.000 90 8 1 1572 1661 228818831 228818919 1.100000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G198100 chr4A 483173530 483178374 4844 False 3020.333333 8948 100.000 1 4845 3 chr4A.!!$F1 4844
1 TraesCS4A01G198100 chr4B 136056912 136061865 4953 True 2352.666667 4484 92.629 5 4845 3 chr4B.!!$R1 4840
2 TraesCS4A01G198100 chr4D 96043455 96047719 4264 True 3398.500000 4431 95.465 1 4384 2 chr4D.!!$R1 4383

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
990 1018 1.006805 CTCATCCGATCCTCACCGC 60.007 63.158 0.00 0.00 0.00 5.68 F
1566 1896 0.179233 GAACCGCCAATCGACGAAAC 60.179 55.000 0.00 0.00 41.67 2.78 F
1569 1899 0.446222 CCGCCAATCGACGAAACATT 59.554 50.000 0.00 0.00 41.67 2.71 F
1575 1905 0.447801 ATCGACGAAACATTGCAGGC 59.552 50.000 0.00 0.00 0.00 4.85 F
1674 2004 0.882474 ACTAATCGCTAGCTAGCCCG 59.118 55.000 34.27 23.51 46.34 6.13 F
2599 2931 0.955178 TTCAGATCGATCTCGGCCTC 59.045 55.000 25.00 0.00 40.29 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2828 3171 0.038343 GGCATGTGTTTGCACCGATT 60.038 50.0 0.0 0.0 44.59 3.34 R
3194 3538 1.339097 AGTTACCCGACTCAGCACTT 58.661 50.0 0.0 0.0 0.00 3.16 R
3195 3539 1.339097 AAGTTACCCGACTCAGCACT 58.661 50.0 0.0 0.0 0.00 4.40 R
3196 3540 2.165319 AAAGTTACCCGACTCAGCAC 57.835 50.0 0.0 0.0 0.00 4.40 R
3197 3541 2.922740 AAAAGTTACCCGACTCAGCA 57.077 45.0 0.0 0.0 0.00 4.41 R
4412 4787 0.027194 GCGTACGTAGCATCGACTCA 59.973 55.0 17.9 0.0 34.70 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.133003 AGACGAGTCAATTCTACCATGGG 59.867 47.826 18.09 0.00 0.00 4.00
36 37 5.237344 CGAGTCAATTCTACCATGGGAAATC 59.763 44.000 18.09 0.00 0.00 2.17
114 115 7.534085 TTGGAATAAGTGTAGATACTTTGCG 57.466 36.000 0.00 0.00 41.01 4.85
226 227 3.655810 GAGCAGCCGACCTCCACAG 62.656 68.421 0.00 0.00 0.00 3.66
246 252 5.061064 CACAGTTGAACACGATCTAGCTTAC 59.939 44.000 0.00 0.00 0.00 2.34
317 323 1.782044 GCATCGGCACACAAAAACAT 58.218 45.000 0.00 0.00 40.72 2.71
320 326 3.547468 GCATCGGCACACAAAAACATATC 59.453 43.478 0.00 0.00 40.72 1.63
389 405 5.569413 CAGTAGATACATTTTGTTTCGGCC 58.431 41.667 0.00 0.00 34.26 6.13
576 593 3.775654 GACCTGTGGGCTCCTCCG 61.776 72.222 0.00 0.00 35.63 4.63
990 1018 1.006805 CTCATCCGATCCTCACCGC 60.007 63.158 0.00 0.00 0.00 5.68
991 1019 2.029666 CATCCGATCCTCACCGCC 59.970 66.667 0.00 0.00 0.00 6.13
1211 1239 2.800544 AGGTATTCGATTTCGCCGATTG 59.199 45.455 0.00 0.00 39.60 2.67
1244 1272 4.311606 CCTATTTTGGTTTTCGGTTTGGG 58.688 43.478 0.00 0.00 0.00 4.12
1251 1279 2.230508 GGTTTTCGGTTTGGGAGGATTC 59.769 50.000 0.00 0.00 0.00 2.52
1469 1799 2.046892 GCACATGCTCACCGAGGT 60.047 61.111 0.00 0.00 38.21 3.85
1471 1801 0.391130 GCACATGCTCACCGAGGTAA 60.391 55.000 0.00 0.00 38.21 2.85
1472 1802 1.743772 GCACATGCTCACCGAGGTAAT 60.744 52.381 0.00 0.00 38.21 1.89
1473 1803 2.632377 CACATGCTCACCGAGGTAATT 58.368 47.619 0.00 0.00 0.00 1.40
1474 1804 3.792401 CACATGCTCACCGAGGTAATTA 58.208 45.455 0.00 0.00 0.00 1.40
1475 1805 4.188462 CACATGCTCACCGAGGTAATTAA 58.812 43.478 0.00 0.00 0.00 1.40
1476 1806 4.034048 CACATGCTCACCGAGGTAATTAAC 59.966 45.833 0.00 0.00 0.00 2.01
1488 1818 3.870274 GGTAATTAACCCGCTCACTTCT 58.130 45.455 0.00 0.00 43.16 2.85
1489 1819 4.259356 GGTAATTAACCCGCTCACTTCTT 58.741 43.478 0.00 0.00 43.16 2.52
1490 1820 5.422145 GGTAATTAACCCGCTCACTTCTTA 58.578 41.667 0.00 0.00 43.16 2.10
1491 1821 5.292834 GGTAATTAACCCGCTCACTTCTTAC 59.707 44.000 0.00 0.00 43.16 2.34
1492 1822 2.642139 TAACCCGCTCACTTCTTACG 57.358 50.000 0.00 0.00 0.00 3.18
1493 1823 0.677842 AACCCGCTCACTTCTTACGT 59.322 50.000 0.00 0.00 0.00 3.57
1494 1824 0.677842 ACCCGCTCACTTCTTACGTT 59.322 50.000 0.00 0.00 0.00 3.99
1495 1825 1.068474 CCCGCTCACTTCTTACGTTG 58.932 55.000 0.00 0.00 0.00 4.10
1496 1826 0.438830 CCGCTCACTTCTTACGTTGC 59.561 55.000 0.00 0.00 0.00 4.17
1497 1827 1.136690 CGCTCACTTCTTACGTTGCA 58.863 50.000 0.00 0.00 0.00 4.08
1498 1828 1.726791 CGCTCACTTCTTACGTTGCAT 59.273 47.619 0.00 0.00 0.00 3.96
1499 1829 2.222596 CGCTCACTTCTTACGTTGCATC 60.223 50.000 0.00 0.00 0.00 3.91
1500 1830 2.222596 GCTCACTTCTTACGTTGCATCG 60.223 50.000 15.36 15.36 0.00 3.84
1501 1831 3.242518 CTCACTTCTTACGTTGCATCGA 58.757 45.455 23.12 4.87 34.70 3.59
1502 1832 3.845178 TCACTTCTTACGTTGCATCGAT 58.155 40.909 23.12 10.18 34.70 3.59
1503 1833 3.857665 TCACTTCTTACGTTGCATCGATC 59.142 43.478 23.12 0.00 34.70 3.69
1504 1834 3.612423 CACTTCTTACGTTGCATCGATCA 59.388 43.478 23.12 5.61 34.70 2.92
1505 1835 4.091365 CACTTCTTACGTTGCATCGATCAA 59.909 41.667 23.12 12.24 34.70 2.57
1506 1836 4.091509 ACTTCTTACGTTGCATCGATCAAC 59.908 41.667 23.12 21.11 40.13 3.18
1507 1837 2.927477 TCTTACGTTGCATCGATCAACC 59.073 45.455 23.12 12.92 40.35 3.77
1508 1838 1.647346 TACGTTGCATCGATCAACCC 58.353 50.000 23.12 9.74 40.35 4.11
1509 1839 1.024579 ACGTTGCATCGATCAACCCC 61.025 55.000 23.12 9.26 40.35 4.95
1510 1840 0.744414 CGTTGCATCGATCAACCCCT 60.744 55.000 23.19 0.00 40.35 4.79
1511 1841 0.734889 GTTGCATCGATCAACCCCTG 59.265 55.000 20.71 2.59 38.21 4.45
1512 1842 1.031571 TTGCATCGATCAACCCCTGC 61.032 55.000 0.00 0.00 0.00 4.85
1513 1843 1.451927 GCATCGATCAACCCCTGCA 60.452 57.895 0.00 0.00 0.00 4.41
1514 1844 1.031571 GCATCGATCAACCCCTGCAA 61.032 55.000 0.00 0.00 0.00 4.08
1515 1845 1.462616 CATCGATCAACCCCTGCAAA 58.537 50.000 0.00 0.00 0.00 3.68
1516 1846 2.026641 CATCGATCAACCCCTGCAAAT 58.973 47.619 0.00 0.00 0.00 2.32
1517 1847 2.214376 TCGATCAACCCCTGCAAATT 57.786 45.000 0.00 0.00 0.00 1.82
1518 1848 3.358111 TCGATCAACCCCTGCAAATTA 57.642 42.857 0.00 0.00 0.00 1.40
1519 1849 3.013921 TCGATCAACCCCTGCAAATTAC 58.986 45.455 0.00 0.00 0.00 1.89
1520 1850 2.752354 CGATCAACCCCTGCAAATTACA 59.248 45.455 0.00 0.00 0.00 2.41
1521 1851 3.427503 CGATCAACCCCTGCAAATTACAC 60.428 47.826 0.00 0.00 0.00 2.90
1522 1852 2.243810 TCAACCCCTGCAAATTACACC 58.756 47.619 0.00 0.00 0.00 4.16
1523 1853 1.275010 CAACCCCTGCAAATTACACCC 59.725 52.381 0.00 0.00 0.00 4.61
1524 1854 0.610785 ACCCCTGCAAATTACACCCG 60.611 55.000 0.00 0.00 0.00 5.28
1525 1855 1.510844 CCCTGCAAATTACACCCGC 59.489 57.895 0.00 0.00 0.00 6.13
1526 1856 1.247419 CCCTGCAAATTACACCCGCA 61.247 55.000 0.00 0.00 0.00 5.69
1527 1857 0.817013 CCTGCAAATTACACCCGCAT 59.183 50.000 0.00 0.00 31.10 4.73
1528 1858 1.202290 CCTGCAAATTACACCCGCATC 60.202 52.381 0.00 0.00 31.10 3.91
1529 1859 1.745087 CTGCAAATTACACCCGCATCT 59.255 47.619 0.00 0.00 31.10 2.90
1530 1860 1.742831 TGCAAATTACACCCGCATCTC 59.257 47.619 0.00 0.00 0.00 2.75
1531 1861 1.065551 GCAAATTACACCCGCATCTCC 59.934 52.381 0.00 0.00 0.00 3.71
1532 1862 2.364632 CAAATTACACCCGCATCTCCA 58.635 47.619 0.00 0.00 0.00 3.86
1533 1863 2.038387 AATTACACCCGCATCTCCAC 57.962 50.000 0.00 0.00 0.00 4.02
1534 1864 0.180406 ATTACACCCGCATCTCCACC 59.820 55.000 0.00 0.00 0.00 4.61
1535 1865 2.233605 TTACACCCGCATCTCCACCG 62.234 60.000 0.00 0.00 0.00 4.94
1536 1866 4.838152 CACCCGCATCTCCACCGG 62.838 72.222 0.00 0.00 41.60 5.28
1552 1882 3.103911 GGCACGTCGTCTGAACCG 61.104 66.667 0.00 0.00 0.00 4.44
1553 1883 3.764049 GCACGTCGTCTGAACCGC 61.764 66.667 0.00 0.00 0.00 5.68
1554 1884 3.103911 CACGTCGTCTGAACCGCC 61.104 66.667 0.00 0.00 0.00 6.13
1555 1885 3.598715 ACGTCGTCTGAACCGCCA 61.599 61.111 0.00 0.00 0.00 5.69
1556 1886 2.355363 CGTCGTCTGAACCGCCAA 60.355 61.111 0.00 0.00 0.00 4.52
1557 1887 1.736645 CGTCGTCTGAACCGCCAAT 60.737 57.895 0.00 0.00 0.00 3.16
1558 1888 1.683790 CGTCGTCTGAACCGCCAATC 61.684 60.000 0.00 0.00 0.00 2.67
1559 1889 1.445410 TCGTCTGAACCGCCAATCG 60.445 57.895 0.00 0.00 38.08 3.34
1560 1890 1.445410 CGTCTGAACCGCCAATCGA 60.445 57.895 0.00 0.00 41.67 3.59
1561 1891 1.683790 CGTCTGAACCGCCAATCGAC 61.684 60.000 0.00 0.00 41.67 4.20
1562 1892 1.445410 TCTGAACCGCCAATCGACG 60.445 57.895 0.00 0.00 41.67 5.12
1563 1893 1.445410 CTGAACCGCCAATCGACGA 60.445 57.895 0.00 0.00 41.67 4.20
1564 1894 1.005984 TGAACCGCCAATCGACGAA 60.006 52.632 0.00 0.00 41.67 3.85
1565 1895 0.600518 TGAACCGCCAATCGACGAAA 60.601 50.000 0.00 0.00 41.67 3.46
1566 1896 0.179233 GAACCGCCAATCGACGAAAC 60.179 55.000 0.00 0.00 41.67 2.78
1567 1897 0.881159 AACCGCCAATCGACGAAACA 60.881 50.000 0.00 0.00 41.67 2.83
1568 1898 0.672401 ACCGCCAATCGACGAAACAT 60.672 50.000 0.00 0.00 41.67 2.71
1569 1899 0.446222 CCGCCAATCGACGAAACATT 59.554 50.000 0.00 0.00 41.67 2.71
1570 1900 1.523501 CGCCAATCGACGAAACATTG 58.476 50.000 0.00 1.47 41.67 2.82
1571 1901 1.259316 GCCAATCGACGAAACATTGC 58.741 50.000 0.00 0.00 0.00 3.56
1572 1902 1.400888 GCCAATCGACGAAACATTGCA 60.401 47.619 0.00 0.00 0.00 4.08
1573 1903 2.508867 CCAATCGACGAAACATTGCAG 58.491 47.619 0.00 0.00 0.00 4.41
1574 1904 2.508867 CAATCGACGAAACATTGCAGG 58.491 47.619 0.00 0.00 0.00 4.85
1575 1905 0.447801 ATCGACGAAACATTGCAGGC 59.552 50.000 0.00 0.00 0.00 4.85
1576 1906 1.509787 CGACGAAACATTGCAGGCG 60.510 57.895 0.00 0.00 0.00 5.52
1672 2002 2.351932 GGTGACTAATCGCTAGCTAGCC 60.352 54.545 34.27 21.05 46.34 3.93
1674 2004 0.882474 ACTAATCGCTAGCTAGCCCG 59.118 55.000 34.27 23.51 46.34 6.13
1675 2005 1.166129 CTAATCGCTAGCTAGCCCGA 58.834 55.000 34.27 27.31 46.34 5.14
1682 2012 1.825474 GCTAGCTAGCCCGAATCCATA 59.175 52.381 31.67 0.00 43.39 2.74
1685 2015 2.260822 AGCTAGCCCGAATCCATATGT 58.739 47.619 12.13 0.00 0.00 2.29
1731 2061 2.417933 GTGGCATCAACTGTGTCTGATC 59.582 50.000 0.00 0.00 29.69 2.92
1739 2069 6.046290 TCAACTGTGTCTGATCATTCTGAT 57.954 37.500 0.00 0.00 40.34 2.90
1871 2201 2.418746 GCGTCATGTGTATTCCTGGAGT 60.419 50.000 0.00 0.00 0.00 3.85
1936 2266 1.371183 CGGTGCAGGAGAAGGACAA 59.629 57.895 0.00 0.00 0.00 3.18
2029 2359 7.312899 TCGCTTTCATTCCTTTAATTTCCTTC 58.687 34.615 0.00 0.00 0.00 3.46
2198 2530 4.793353 GCTGCAGTACACCTATGCTAGTAC 60.793 50.000 16.64 0.00 40.62 2.73
2200 2532 3.562973 GCAGTACACCTATGCTAGTACGA 59.437 47.826 0.00 0.00 41.16 3.43
2215 2547 7.868775 TGCTAGTACGAGTACTAATTATGGTG 58.131 38.462 19.74 9.78 45.03 4.17
2359 2691 1.915614 ATGTGCTTGCTTTCTCGGCG 61.916 55.000 0.00 0.00 0.00 6.46
2366 2698 2.863153 CTTTCTCGGCGCCAACAG 59.137 61.111 28.98 18.60 0.00 3.16
2485 2817 3.723348 GGTTTGGCCGTGCTCGTC 61.723 66.667 7.47 0.00 35.01 4.20
2493 2825 2.044555 CCGTGCTCGTCCAGGTAGA 61.045 63.158 7.47 0.00 35.01 2.59
2496 2828 0.966370 GTGCTCGTCCAGGTAGAGGT 60.966 60.000 13.39 0.00 32.96 3.85
2599 2931 0.955178 TTCAGATCGATCTCGGCCTC 59.045 55.000 25.00 0.00 40.29 4.70
2634 2966 2.816411 TCGGTCTGGATAAACTCTGGT 58.184 47.619 0.00 0.00 0.00 4.00
2749 3082 1.855513 CAAACTTCGTCACGGGTGTA 58.144 50.000 0.00 0.00 0.00 2.90
2969 3313 5.710613 GTTCCTCTGAACGATTCTTCATC 57.289 43.478 0.00 0.00 41.35 2.92
2977 3321 6.710295 TCTGAACGATTCTTCATCTTTTTCCA 59.290 34.615 0.00 0.00 29.71 3.53
3036 3380 4.629634 TGAATATGATCGTTGCACGTTTCT 59.370 37.500 8.22 0.00 43.14 2.52
3102 3446 4.939509 AGTTAAATAACATGCGTTCGCT 57.060 36.364 17.63 0.64 38.62 4.93
3192 3536 3.063452 ACTTGTCACACGCAAAGTAAGTG 59.937 43.478 0.00 0.00 41.28 3.16
3194 3538 3.783191 TGTCACACGCAAAGTAAGTGTA 58.217 40.909 0.00 0.00 46.01 2.90
3195 3539 4.182339 TGTCACACGCAAAGTAAGTGTAA 58.818 39.130 0.00 0.00 46.01 2.41
3196 3540 4.269123 TGTCACACGCAAAGTAAGTGTAAG 59.731 41.667 0.00 0.00 46.01 2.34
3197 3541 4.269363 GTCACACGCAAAGTAAGTGTAAGT 59.731 41.667 0.00 0.00 46.01 2.24
3198 3542 4.269123 TCACACGCAAAGTAAGTGTAAGTG 59.731 41.667 0.00 0.00 46.01 3.16
3199 3543 3.001939 ACACGCAAAGTAAGTGTAAGTGC 59.998 43.478 0.00 0.00 45.92 4.40
3200 3544 3.247648 CACGCAAAGTAAGTGTAAGTGCT 59.752 43.478 0.00 0.00 0.00 4.40
3201 3545 3.247648 ACGCAAAGTAAGTGTAAGTGCTG 59.752 43.478 0.00 0.00 0.00 4.41
3202 3546 3.493129 CGCAAAGTAAGTGTAAGTGCTGA 59.507 43.478 0.00 0.00 0.00 4.26
3203 3547 4.376413 CGCAAAGTAAGTGTAAGTGCTGAG 60.376 45.833 0.00 0.00 0.00 3.35
3204 3548 4.511826 GCAAAGTAAGTGTAAGTGCTGAGT 59.488 41.667 0.00 0.00 0.00 3.41
3205 3549 5.333416 GCAAAGTAAGTGTAAGTGCTGAGTC 60.333 44.000 0.00 0.00 0.00 3.36
3206 3550 4.162096 AGTAAGTGTAAGTGCTGAGTCG 57.838 45.455 0.00 0.00 0.00 4.18
3776 4149 4.214327 CGGAGGCGAGGAAGAGGC 62.214 72.222 0.00 0.00 0.00 4.70
3846 4219 4.687215 TGGCGAGCACTGGTGAGC 62.687 66.667 4.79 6.36 0.00 4.26
4007 4381 8.492415 TGATATTAGTACAGCTCCTACCAATT 57.508 34.615 0.00 0.00 0.00 2.32
4094 4468 2.029649 CCCAAGGCACTGAAGAAATGTG 60.030 50.000 0.00 0.00 40.86 3.21
4105 4479 4.677584 TGAAGAAATGTGTTCGGTTTTGG 58.322 39.130 0.00 0.00 29.54 3.28
4208 4582 2.005971 ACGATTCTTTACGTCCCAGC 57.994 50.000 0.00 0.00 38.34 4.85
4267 4641 7.390718 ACAAAGTAAATCAAGCGAAGTAAGGAT 59.609 33.333 0.00 0.00 0.00 3.24
4268 4642 8.879759 CAAAGTAAATCAAGCGAAGTAAGGATA 58.120 33.333 0.00 0.00 0.00 2.59
4331 4705 5.621193 ACTTGAATCTGAAATATACCGGGG 58.379 41.667 6.32 0.00 0.00 5.73
4345 4720 3.181393 ACCGGGGACTTAGAGTAACTT 57.819 47.619 6.32 0.00 0.00 2.66
4372 4747 6.426328 AGCAGATTCTCTTGTAAACAGTCTTG 59.574 38.462 0.00 0.00 0.00 3.02
4374 4749 5.703130 AGATTCTCTTGTAAACAGTCTTGCC 59.297 40.000 0.00 0.00 0.00 4.52
4384 4759 2.042464 ACAGTCTTGCCAAGTCTCAGA 58.958 47.619 4.04 0.00 0.00 3.27
4385 4760 2.636893 ACAGTCTTGCCAAGTCTCAGAT 59.363 45.455 4.04 0.00 0.00 2.90
4386 4761 3.072184 ACAGTCTTGCCAAGTCTCAGATT 59.928 43.478 4.04 0.00 0.00 2.40
4387 4762 3.683822 CAGTCTTGCCAAGTCTCAGATTC 59.316 47.826 4.04 0.00 0.00 2.52
4389 4764 3.932089 GTCTTGCCAAGTCTCAGATTCTC 59.068 47.826 4.04 0.00 0.00 2.87
4391 4766 4.285517 TCTTGCCAAGTCTCAGATTCTCTT 59.714 41.667 4.04 0.00 0.00 2.85
4392 4767 3.935315 TGCCAAGTCTCAGATTCTCTTG 58.065 45.455 6.06 6.06 36.34 3.02
4393 4768 3.326006 TGCCAAGTCTCAGATTCTCTTGT 59.674 43.478 10.32 0.00 35.26 3.16
4394 4769 4.528206 TGCCAAGTCTCAGATTCTCTTGTA 59.472 41.667 10.32 0.41 35.26 2.41
4395 4770 5.012046 TGCCAAGTCTCAGATTCTCTTGTAA 59.988 40.000 10.32 0.00 35.26 2.41
4396 4771 5.934625 GCCAAGTCTCAGATTCTCTTGTAAA 59.065 40.000 10.32 0.00 35.26 2.01
4397 4772 6.128418 GCCAAGTCTCAGATTCTCTTGTAAAC 60.128 42.308 10.32 0.00 35.26 2.01
4398 4773 6.931281 CCAAGTCTCAGATTCTCTTGTAAACA 59.069 38.462 10.32 0.00 35.26 2.83
4399 4774 7.117523 CCAAGTCTCAGATTCTCTTGTAAACAG 59.882 40.741 10.32 0.00 35.26 3.16
4400 4775 7.296628 AGTCTCAGATTCTCTTGTAAACAGT 57.703 36.000 0.00 0.00 0.00 3.55
4401 4776 7.375053 AGTCTCAGATTCTCTTGTAAACAGTC 58.625 38.462 0.00 0.00 0.00 3.51
4402 4777 7.232534 AGTCTCAGATTCTCTTGTAAACAGTCT 59.767 37.037 0.00 0.00 0.00 3.24
4403 4778 7.870445 GTCTCAGATTCTCTTGTAAACAGTCTT 59.130 37.037 0.00 0.00 0.00 3.01
4404 4779 7.869937 TCTCAGATTCTCTTGTAAACAGTCTTG 59.130 37.037 0.00 0.00 0.00 3.02
4405 4780 6.425114 TCAGATTCTCTTGTAAACAGTCTTGC 59.575 38.462 0.00 0.00 0.00 4.01
4406 4781 5.703130 AGATTCTCTTGTAAACAGTCTTGCC 59.297 40.000 0.00 0.00 0.00 4.52
4407 4782 4.415881 TCTCTTGTAAACAGTCTTGCCA 57.584 40.909 0.00 0.00 0.00 4.92
4408 4783 4.776349 TCTCTTGTAAACAGTCTTGCCAA 58.224 39.130 0.00 0.00 0.00 4.52
4409 4784 4.816385 TCTCTTGTAAACAGTCTTGCCAAG 59.184 41.667 0.00 0.00 0.00 3.61
4410 4785 4.523083 TCTTGTAAACAGTCTTGCCAAGT 58.477 39.130 4.04 0.00 0.00 3.16
4411 4786 4.947388 TCTTGTAAACAGTCTTGCCAAGTT 59.053 37.500 4.04 0.00 0.00 2.66
4412 4787 5.417580 TCTTGTAAACAGTCTTGCCAAGTTT 59.582 36.000 4.04 1.34 36.49 2.66
4413 4788 4.992688 TGTAAACAGTCTTGCCAAGTTTG 58.007 39.130 4.04 6.84 34.58 2.93
4414 4789 4.702612 TGTAAACAGTCTTGCCAAGTTTGA 59.297 37.500 14.63 0.00 34.58 2.69
4415 4790 4.376340 AAACAGTCTTGCCAAGTTTGAG 57.624 40.909 14.63 2.22 31.81 3.02
4416 4791 3.004752 ACAGTCTTGCCAAGTTTGAGT 57.995 42.857 14.63 2.72 0.00 3.41
4417 4792 2.945668 ACAGTCTTGCCAAGTTTGAGTC 59.054 45.455 14.63 0.00 0.00 3.36
4418 4793 2.032549 CAGTCTTGCCAAGTTTGAGTCG 60.033 50.000 4.04 0.00 0.00 4.18
4419 4794 2.158957 AGTCTTGCCAAGTTTGAGTCGA 60.159 45.455 4.04 0.00 0.00 4.20
4420 4795 2.808543 GTCTTGCCAAGTTTGAGTCGAT 59.191 45.455 4.04 0.00 0.00 3.59
4421 4796 2.807967 TCTTGCCAAGTTTGAGTCGATG 59.192 45.455 4.04 0.00 0.00 3.84
4422 4797 0.874390 TGCCAAGTTTGAGTCGATGC 59.126 50.000 0.00 0.00 0.00 3.91
4423 4798 1.160137 GCCAAGTTTGAGTCGATGCT 58.840 50.000 0.00 0.00 0.00 3.79
4424 4799 2.289382 TGCCAAGTTTGAGTCGATGCTA 60.289 45.455 0.00 0.00 0.00 3.49
4425 4800 2.094417 GCCAAGTTTGAGTCGATGCTAC 59.906 50.000 0.00 0.00 0.00 3.58
4426 4801 2.345641 CCAAGTTTGAGTCGATGCTACG 59.654 50.000 0.00 0.00 0.00 3.51
4446 4821 4.525686 ACGTACGCGAGATCTTTAAGATC 58.474 43.478 23.19 23.19 44.79 2.75
4448 4823 7.740575 ACGTACGCGAGATCTTTAAGATCCG 62.741 48.000 25.88 26.10 45.14 4.18
4493 4868 9.748100 TTTTCTTTTTCTTTTGCATTTTACGTC 57.252 25.926 0.00 0.00 0.00 4.34
4494 4869 8.467402 TTCTTTTTCTTTTGCATTTTACGTCA 57.533 26.923 0.00 0.00 0.00 4.35
4495 4870 7.890763 TCTTTTTCTTTTGCATTTTACGTCAC 58.109 30.769 0.00 0.00 0.00 3.67
4496 4871 7.757624 TCTTTTTCTTTTGCATTTTACGTCACT 59.242 29.630 0.00 0.00 0.00 3.41
4497 4872 7.820044 TTTTCTTTTGCATTTTACGTCACTT 57.180 28.000 0.00 0.00 0.00 3.16
4498 4873 6.804534 TTCTTTTGCATTTTACGTCACTTG 57.195 33.333 0.00 0.00 0.00 3.16
4499 4874 6.125327 TCTTTTGCATTTTACGTCACTTGA 57.875 33.333 0.00 0.00 0.00 3.02
4500 4875 6.734137 TCTTTTGCATTTTACGTCACTTGAT 58.266 32.000 0.00 0.00 0.00 2.57
4501 4876 7.199766 TCTTTTGCATTTTACGTCACTTGATT 58.800 30.769 0.00 0.00 0.00 2.57
4502 4877 7.704472 TCTTTTGCATTTTACGTCACTTGATTT 59.296 29.630 0.00 0.00 0.00 2.17
4503 4878 8.858003 TTTTGCATTTTACGTCACTTGATTTA 57.142 26.923 0.00 0.00 0.00 1.40
4504 4879 8.500837 TTTGCATTTTACGTCACTTGATTTAG 57.499 30.769 0.00 0.00 0.00 1.85
4505 4880 7.428282 TGCATTTTACGTCACTTGATTTAGA 57.572 32.000 0.00 0.00 0.00 2.10
4506 4881 7.518161 TGCATTTTACGTCACTTGATTTAGAG 58.482 34.615 0.00 0.00 0.00 2.43
4507 4882 7.386573 TGCATTTTACGTCACTTGATTTAGAGA 59.613 33.333 0.00 0.00 0.00 3.10
4508 4883 7.688578 GCATTTTACGTCACTTGATTTAGAGAC 59.311 37.037 0.00 0.00 33.91 3.36
4509 4884 8.708742 CATTTTACGTCACTTGATTTAGAGACA 58.291 33.333 0.00 0.00 36.07 3.41
4510 4885 8.651391 TTTTACGTCACTTGATTTAGAGACAA 57.349 30.769 0.00 0.00 36.07 3.18
4511 4886 8.651391 TTTACGTCACTTGATTTAGAGACAAA 57.349 30.769 0.00 0.00 36.07 2.83
4512 4887 6.771188 ACGTCACTTGATTTAGAGACAAAG 57.229 37.500 0.00 0.00 36.07 2.77
4513 4888 6.513180 ACGTCACTTGATTTAGAGACAAAGA 58.487 36.000 0.00 0.00 36.07 2.52
4514 4889 6.984474 ACGTCACTTGATTTAGAGACAAAGAA 59.016 34.615 0.00 0.00 36.07 2.52
4515 4890 7.657761 ACGTCACTTGATTTAGAGACAAAGAAT 59.342 33.333 0.00 0.00 36.07 2.40
4516 4891 8.165428 CGTCACTTGATTTAGAGACAAAGAATC 58.835 37.037 0.00 0.00 36.07 2.52
4517 4892 8.165428 GTCACTTGATTTAGAGACAAAGAATCG 58.835 37.037 0.00 0.00 36.26 3.34
4518 4893 7.331934 TCACTTGATTTAGAGACAAAGAATCGG 59.668 37.037 0.00 0.00 31.15 4.18
4519 4894 7.118390 CACTTGATTTAGAGACAAAGAATCGGT 59.882 37.037 0.00 0.00 31.15 4.69
4520 4895 7.661847 ACTTGATTTAGAGACAAAGAATCGGTT 59.338 33.333 0.00 0.00 31.15 4.44
4521 4896 9.151471 CTTGATTTAGAGACAAAGAATCGGTTA 57.849 33.333 0.00 0.00 31.15 2.85
4522 4897 9.496873 TTGATTTAGAGACAAAGAATCGGTTAA 57.503 29.630 0.00 0.00 31.15 2.01
4523 4898 9.496873 TGATTTAGAGACAAAGAATCGGTTAAA 57.503 29.630 0.00 0.00 31.15 1.52
4531 4906 9.063615 AGACAAAGAATCGGTTAAATGTTAGTT 57.936 29.630 0.00 0.00 0.00 2.24
4534 4909 9.113876 CAAAGAATCGGTTAAATGTTAGTTGAC 57.886 33.333 0.00 0.00 0.00 3.18
4540 4915 7.383687 TCGGTTAAATGTTAGTTGACTGAGAT 58.616 34.615 0.00 0.00 0.00 2.75
4545 4920 9.587772 TTAAATGTTAGTTGACTGAGATCTAGC 57.412 33.333 0.00 0.00 0.00 3.42
4551 4926 2.103373 TGACTGAGATCTAGCCACACC 58.897 52.381 0.00 0.00 0.00 4.16
4552 4927 2.291865 TGACTGAGATCTAGCCACACCT 60.292 50.000 0.00 0.00 0.00 4.00
4568 4986 5.482175 GCCACACCTATCTATAGAACCTCAT 59.518 44.000 6.52 0.00 32.05 2.90
4608 5026 9.534565 TTTGAATGTTTTATTTTTCGACCATGA 57.465 25.926 0.00 0.00 0.00 3.07
4609 5027 9.703892 TTGAATGTTTTATTTTTCGACCATGAT 57.296 25.926 0.00 0.00 0.00 2.45
4641 5059 5.127491 CCCAGCCCGTAAGAATATACAAAA 58.873 41.667 0.00 0.00 43.02 2.44
4647 5065 6.589135 CCCGTAAGAATATACAAAAGGACCT 58.411 40.000 0.00 0.00 43.02 3.85
4677 5095 6.710597 TCTGACTTCGCCACTATATTTACT 57.289 37.500 0.00 0.00 0.00 2.24
4678 5096 6.504398 TCTGACTTCGCCACTATATTTACTG 58.496 40.000 0.00 0.00 0.00 2.74
4684 5102 5.084519 TCGCCACTATATTTACTGGATCCT 58.915 41.667 14.23 0.00 0.00 3.24
4725 5143 0.740737 CGGCATTTCTCCAACCCATC 59.259 55.000 0.00 0.00 0.00 3.51
4729 5147 2.686915 GCATTTCTCCAACCCATCTCTG 59.313 50.000 0.00 0.00 0.00 3.35
4738 5156 0.179000 ACCCATCTCTGTCGCAATCC 59.821 55.000 0.00 0.00 0.00 3.01
4739 5157 0.533755 CCCATCTCTGTCGCAATCCC 60.534 60.000 0.00 0.00 0.00 3.85
4749 5167 0.757561 TCGCAATCCCCATACTCCGA 60.758 55.000 0.00 0.00 0.00 4.55
4750 5168 0.321671 CGCAATCCCCATACTCCGAT 59.678 55.000 0.00 0.00 0.00 4.18
4753 5171 2.026822 GCAATCCCCATACTCCGATGAT 60.027 50.000 0.00 0.00 0.00 2.45
4760 5178 4.019860 CCCCATACTCCGATGATTGATTCT 60.020 45.833 0.00 0.00 0.00 2.40
4763 5181 5.106791 CCATACTCCGATGATTGATTCTTGC 60.107 44.000 0.00 0.00 0.00 4.01
4764 5182 3.877559 ACTCCGATGATTGATTCTTGCA 58.122 40.909 0.00 0.00 0.00 4.08
4772 5190 3.631227 TGATTGATTCTTGCACACACACA 59.369 39.130 0.00 0.00 0.00 3.72
4788 5206 1.071699 ACACACACCCGTTTAGAGCAT 59.928 47.619 0.00 0.00 0.00 3.79
4801 5220 0.607489 AGAGCATATCAATGGCGGCC 60.607 55.000 13.32 13.32 33.38 6.13
4839 5258 2.597217 CGCCCTTTCCTGCAACCA 60.597 61.111 0.00 0.00 0.00 3.67
4841 5260 2.919494 GCCCTTTCCTGCAACCACG 61.919 63.158 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 9.590451 AGATTCTATGTTGCATTTGTTTAATGG 57.410 29.630 0.00 0.00 43.20 3.16
226 227 4.745649 AGGTAAGCTAGATCGTGTTCAAC 58.254 43.478 0.00 0.00 0.00 3.18
246 252 3.396260 TGTTCCCGTTTTCTGTCTAGG 57.604 47.619 0.00 0.00 0.00 3.02
252 258 5.156355 CAAAGATGATGTTCCCGTTTTCTG 58.844 41.667 0.00 0.00 0.00 3.02
253 259 4.321230 GCAAAGATGATGTTCCCGTTTTCT 60.321 41.667 0.00 0.00 0.00 2.52
254 260 3.920412 GCAAAGATGATGTTCCCGTTTTC 59.080 43.478 0.00 0.00 0.00 2.29
255 261 3.573967 AGCAAAGATGATGTTCCCGTTTT 59.426 39.130 0.00 0.00 0.00 2.43
317 323 0.734889 GTTTCTCGTCGTCCCCGATA 59.265 55.000 0.00 0.00 46.30 2.92
320 326 0.598158 TTTGTTTCTCGTCGTCCCCG 60.598 55.000 0.00 0.00 0.00 5.73
329 338 4.088496 GCATGATTCCGTTTTTGTTTCTCG 59.912 41.667 0.00 0.00 0.00 4.04
330 339 4.981674 TGCATGATTCCGTTTTTGTTTCTC 59.018 37.500 0.00 0.00 0.00 2.87
331 340 4.942852 TGCATGATTCCGTTTTTGTTTCT 58.057 34.783 0.00 0.00 0.00 2.52
389 405 2.874694 CGATGCGTTCCATCCAGCG 61.875 63.158 0.00 0.00 46.17 5.18
1185 1213 1.226746 CGAAATCGAATACCTGGGCC 58.773 55.000 0.00 0.00 43.02 5.80
1188 1216 0.859232 CGGCGAAATCGAATACCTGG 59.141 55.000 0.00 0.00 43.02 4.45
1195 1223 0.391927 ACCCAATCGGCGAAATCGAA 60.392 50.000 15.93 0.00 40.15 3.71
1244 1272 2.294512 GGCCAAATCAATCGGAATCCTC 59.705 50.000 0.00 0.00 0.00 3.71
1251 1279 2.412937 GCCGGCCAAATCAATCGG 59.587 61.111 18.11 0.00 43.13 4.18
1469 1799 5.104374 CGTAAGAAGTGAGCGGGTTAATTA 58.896 41.667 0.00 0.00 43.02 1.40
1471 1801 3.056322 ACGTAAGAAGTGAGCGGGTTAAT 60.056 43.478 0.00 0.00 43.62 1.40
1472 1802 2.297033 ACGTAAGAAGTGAGCGGGTTAA 59.703 45.455 0.00 0.00 43.62 2.01
1473 1803 1.888512 ACGTAAGAAGTGAGCGGGTTA 59.111 47.619 0.00 0.00 43.62 2.85
1474 1804 0.677842 ACGTAAGAAGTGAGCGGGTT 59.322 50.000 0.00 0.00 43.62 4.11
1475 1805 0.677842 AACGTAAGAAGTGAGCGGGT 59.322 50.000 0.00 0.00 43.62 5.28
1476 1806 1.068474 CAACGTAAGAAGTGAGCGGG 58.932 55.000 0.00 0.00 43.62 6.13
1477 1807 0.438830 GCAACGTAAGAAGTGAGCGG 59.561 55.000 0.00 0.00 43.62 5.52
1478 1808 1.136690 TGCAACGTAAGAAGTGAGCG 58.863 50.000 0.00 0.00 43.62 5.03
1479 1809 2.222596 CGATGCAACGTAAGAAGTGAGC 60.223 50.000 8.38 0.00 43.62 4.26
1480 1810 3.242518 TCGATGCAACGTAAGAAGTGAG 58.757 45.455 16.31 0.00 43.62 3.51
1481 1811 3.291809 TCGATGCAACGTAAGAAGTGA 57.708 42.857 16.31 0.00 43.62 3.41
1482 1812 3.612423 TGATCGATGCAACGTAAGAAGTG 59.388 43.478 16.31 0.00 43.62 3.16
1483 1813 3.845178 TGATCGATGCAACGTAAGAAGT 58.155 40.909 16.31 0.00 43.62 3.01
1484 1814 4.492570 GGTTGATCGATGCAACGTAAGAAG 60.493 45.833 22.73 0.00 44.92 2.85
1485 1815 3.369756 GGTTGATCGATGCAACGTAAGAA 59.630 43.478 22.73 3.00 44.92 2.52
1486 1816 2.927477 GGTTGATCGATGCAACGTAAGA 59.073 45.455 22.73 0.00 44.92 2.10
1487 1817 2.030457 GGGTTGATCGATGCAACGTAAG 59.970 50.000 22.73 0.00 44.92 2.34
1488 1818 2.004017 GGGTTGATCGATGCAACGTAA 58.996 47.619 22.73 7.65 44.92 3.18
1489 1819 1.647346 GGGTTGATCGATGCAACGTA 58.353 50.000 22.73 3.75 44.92 3.57
1490 1820 1.024579 GGGGTTGATCGATGCAACGT 61.025 55.000 22.73 3.78 44.92 3.99
1491 1821 0.744414 AGGGGTTGATCGATGCAACG 60.744 55.000 22.73 10.48 44.92 4.10
1492 1822 0.734889 CAGGGGTTGATCGATGCAAC 59.265 55.000 22.10 22.10 43.64 4.17
1493 1823 1.031571 GCAGGGGTTGATCGATGCAA 61.032 55.000 0.54 4.37 33.92 4.08
1494 1824 1.451927 GCAGGGGTTGATCGATGCA 60.452 57.895 0.54 0.00 33.92 3.96
1495 1825 1.031571 TTGCAGGGGTTGATCGATGC 61.032 55.000 0.54 0.00 0.00 3.91
1496 1826 1.462616 TTTGCAGGGGTTGATCGATG 58.537 50.000 0.54 0.00 0.00 3.84
1497 1827 2.442236 ATTTGCAGGGGTTGATCGAT 57.558 45.000 0.00 0.00 0.00 3.59
1498 1828 2.214376 AATTTGCAGGGGTTGATCGA 57.786 45.000 0.00 0.00 0.00 3.59
1499 1829 2.752354 TGTAATTTGCAGGGGTTGATCG 59.248 45.455 0.00 0.00 0.00 3.69
1500 1830 3.119137 GGTGTAATTTGCAGGGGTTGATC 60.119 47.826 0.00 0.00 0.00 2.92
1501 1831 2.831526 GGTGTAATTTGCAGGGGTTGAT 59.168 45.455 0.00 0.00 0.00 2.57
1502 1832 2.243810 GGTGTAATTTGCAGGGGTTGA 58.756 47.619 0.00 0.00 0.00 3.18
1503 1833 1.275010 GGGTGTAATTTGCAGGGGTTG 59.725 52.381 0.00 0.00 0.00 3.77
1504 1834 1.639722 GGGTGTAATTTGCAGGGGTT 58.360 50.000 0.00 0.00 0.00 4.11
1505 1835 0.610785 CGGGTGTAATTTGCAGGGGT 60.611 55.000 0.00 0.00 0.00 4.95
1506 1836 1.944234 GCGGGTGTAATTTGCAGGGG 61.944 60.000 0.00 0.00 0.00 4.79
1507 1837 1.247419 TGCGGGTGTAATTTGCAGGG 61.247 55.000 0.00 0.00 0.00 4.45
1508 1838 0.817013 ATGCGGGTGTAATTTGCAGG 59.183 50.000 0.00 0.00 39.17 4.85
1509 1839 1.745087 AGATGCGGGTGTAATTTGCAG 59.255 47.619 0.00 0.00 39.17 4.41
1510 1840 1.742831 GAGATGCGGGTGTAATTTGCA 59.257 47.619 0.00 0.00 40.23 4.08
1511 1841 1.065551 GGAGATGCGGGTGTAATTTGC 59.934 52.381 0.00 0.00 0.00 3.68
1512 1842 2.097466 GTGGAGATGCGGGTGTAATTTG 59.903 50.000 0.00 0.00 0.00 2.32
1513 1843 2.365582 GTGGAGATGCGGGTGTAATTT 58.634 47.619 0.00 0.00 0.00 1.82
1514 1844 1.408266 GGTGGAGATGCGGGTGTAATT 60.408 52.381 0.00 0.00 0.00 1.40
1515 1845 0.180406 GGTGGAGATGCGGGTGTAAT 59.820 55.000 0.00 0.00 0.00 1.89
1516 1846 1.600107 GGTGGAGATGCGGGTGTAA 59.400 57.895 0.00 0.00 0.00 2.41
1517 1847 2.717044 CGGTGGAGATGCGGGTGTA 61.717 63.158 0.00 0.00 0.00 2.90
1518 1848 4.082523 CGGTGGAGATGCGGGTGT 62.083 66.667 0.00 0.00 0.00 4.16
1519 1849 4.838152 CCGGTGGAGATGCGGGTG 62.838 72.222 0.00 0.00 0.00 4.61
1524 1854 4.760047 ACGTGCCGGTGGAGATGC 62.760 66.667 1.90 0.00 0.00 3.91
1525 1855 2.509336 GACGTGCCGGTGGAGATG 60.509 66.667 1.90 0.00 0.00 2.90
1526 1856 4.129737 CGACGTGCCGGTGGAGAT 62.130 66.667 1.90 0.00 0.00 2.75
1531 1861 3.834447 TTCAGACGACGTGCCGGTG 62.834 63.158 4.58 0.00 0.00 4.94
1532 1862 3.598715 TTCAGACGACGTGCCGGT 61.599 61.111 4.58 0.00 0.00 5.28
1533 1863 3.103911 GTTCAGACGACGTGCCGG 61.104 66.667 4.58 0.00 0.00 6.13
1534 1864 3.103911 GGTTCAGACGACGTGCCG 61.104 66.667 4.58 0.00 0.00 5.69
1535 1865 3.103911 CGGTTCAGACGACGTGCC 61.104 66.667 4.58 0.00 0.00 5.01
1536 1866 3.764049 GCGGTTCAGACGACGTGC 61.764 66.667 4.58 0.00 0.00 5.34
1537 1867 3.103911 GGCGGTTCAGACGACGTG 61.104 66.667 4.58 0.00 0.00 4.49
1538 1868 2.430382 ATTGGCGGTTCAGACGACGT 62.430 55.000 0.00 0.00 43.75 4.34
1539 1869 1.683790 GATTGGCGGTTCAGACGACG 61.684 60.000 0.00 0.00 43.75 5.12
1540 1870 1.683790 CGATTGGCGGTTCAGACGAC 61.684 60.000 0.00 0.00 40.49 4.34
1541 1871 1.445410 CGATTGGCGGTTCAGACGA 60.445 57.895 0.00 0.00 36.03 4.20
1542 1872 1.445410 TCGATTGGCGGTTCAGACG 60.445 57.895 0.00 0.00 41.33 4.18
1543 1873 1.683790 CGTCGATTGGCGGTTCAGAC 61.684 60.000 0.00 0.00 41.33 3.51
1544 1874 1.445410 CGTCGATTGGCGGTTCAGA 60.445 57.895 0.00 0.00 41.33 3.27
1545 1875 1.011968 TTCGTCGATTGGCGGTTCAG 61.012 55.000 7.19 0.00 41.33 3.02
1546 1876 0.600518 TTTCGTCGATTGGCGGTTCA 60.601 50.000 7.19 0.00 41.33 3.18
1547 1877 0.179233 GTTTCGTCGATTGGCGGTTC 60.179 55.000 7.19 0.00 41.33 3.62
1548 1878 0.881159 TGTTTCGTCGATTGGCGGTT 60.881 50.000 7.19 0.00 41.33 4.44
1549 1879 0.672401 ATGTTTCGTCGATTGGCGGT 60.672 50.000 7.19 0.00 41.33 5.68
1550 1880 0.446222 AATGTTTCGTCGATTGGCGG 59.554 50.000 7.19 0.00 41.33 6.13
1551 1881 1.523501 CAATGTTTCGTCGATTGGCG 58.476 50.000 0.00 0.00 42.69 5.69
1552 1882 1.259316 GCAATGTTTCGTCGATTGGC 58.741 50.000 8.05 0.00 0.00 4.52
1553 1883 2.508867 CTGCAATGTTTCGTCGATTGG 58.491 47.619 8.05 0.00 0.00 3.16
1554 1884 2.508867 CCTGCAATGTTTCGTCGATTG 58.491 47.619 0.00 0.00 0.00 2.67
1555 1885 1.135689 GCCTGCAATGTTTCGTCGATT 60.136 47.619 0.00 0.00 0.00 3.34
1556 1886 0.447801 GCCTGCAATGTTTCGTCGAT 59.552 50.000 0.00 0.00 0.00 3.59
1557 1887 1.866237 GCCTGCAATGTTTCGTCGA 59.134 52.632 0.00 0.00 0.00 4.20
1558 1888 1.509787 CGCCTGCAATGTTTCGTCG 60.510 57.895 0.00 0.00 0.00 5.12
1559 1889 1.154225 CCGCCTGCAATGTTTCGTC 60.154 57.895 0.00 0.00 0.00 4.20
1560 1890 1.577328 CTCCGCCTGCAATGTTTCGT 61.577 55.000 0.00 0.00 0.00 3.85
1561 1891 1.135315 CTCCGCCTGCAATGTTTCG 59.865 57.895 0.00 0.00 0.00 3.46
1562 1892 0.881118 TTCTCCGCCTGCAATGTTTC 59.119 50.000 0.00 0.00 0.00 2.78
1563 1893 0.883833 CTTCTCCGCCTGCAATGTTT 59.116 50.000 0.00 0.00 0.00 2.83
1564 1894 0.962356 CCTTCTCCGCCTGCAATGTT 60.962 55.000 0.00 0.00 0.00 2.71
1565 1895 1.377725 CCTTCTCCGCCTGCAATGT 60.378 57.895 0.00 0.00 0.00 2.71
1566 1896 1.078214 TCCTTCTCCGCCTGCAATG 60.078 57.895 0.00 0.00 0.00 2.82
1567 1897 1.222936 CTCCTTCTCCGCCTGCAAT 59.777 57.895 0.00 0.00 0.00 3.56
1568 1898 2.665000 CTCCTTCTCCGCCTGCAA 59.335 61.111 0.00 0.00 0.00 4.08
1569 1899 3.393970 CCTCCTTCTCCGCCTGCA 61.394 66.667 0.00 0.00 0.00 4.41
1570 1900 4.847444 GCCTCCTTCTCCGCCTGC 62.847 72.222 0.00 0.00 0.00 4.85
1571 1901 4.521062 CGCCTCCTTCTCCGCCTG 62.521 72.222 0.00 0.00 0.00 4.85
1572 1902 4.761058 TCGCCTCCTTCTCCGCCT 62.761 66.667 0.00 0.00 0.00 5.52
1573 1903 3.724914 CTTCGCCTCCTTCTCCGCC 62.725 68.421 0.00 0.00 0.00 6.13
1574 1904 2.202810 CTTCGCCTCCTTCTCCGC 60.203 66.667 0.00 0.00 0.00 5.54
1575 1905 2.202810 GCTTCGCCTCCTTCTCCG 60.203 66.667 0.00 0.00 0.00 4.63
1576 1906 2.202810 CGCTTCGCCTCCTTCTCC 60.203 66.667 0.00 0.00 0.00 3.71
1697 2027 2.361189 TGCCACAGCAGCTGTAGTA 58.639 52.632 27.80 17.64 46.52 1.82
1709 2039 1.140652 TCAGACACAGTTGATGCCACA 59.859 47.619 0.00 0.00 0.00 4.17
1731 2061 1.125021 GGCGCGAATCGTATCAGAATG 59.875 52.381 12.10 0.00 41.07 2.67
1739 2069 2.577644 GACACGGCGCGAATCGTA 60.578 61.111 12.10 0.00 41.07 3.43
1871 2201 7.567458 TGATGGTGATCTGACATTTCAAGATA 58.433 34.615 0.00 0.00 0.00 1.98
2029 2359 0.258774 ATGGATGACGGGGAAAAGGG 59.741 55.000 0.00 0.00 0.00 3.95
2198 2530 5.461078 CCGGTTTCACCATAATTAGTACTCG 59.539 44.000 0.00 0.00 38.47 4.18
2200 2532 5.397109 CCCCGGTTTCACCATAATTAGTACT 60.397 44.000 0.00 0.00 38.47 2.73
2215 2547 2.781431 ATTGACAGGCCCCCGGTTTC 62.781 60.000 0.00 0.00 30.91 2.78
2359 2691 2.126734 GCACACGCATCTGTTGGC 60.127 61.111 0.00 0.00 38.36 4.52
2475 2807 1.994507 CTCTACCTGGACGAGCACGG 61.995 65.000 8.74 0.00 44.46 4.94
2485 2817 2.099263 CGTACACATGACCTCTACCTGG 59.901 54.545 0.00 0.00 0.00 4.45
2493 2825 2.096496 GCTACGTACGTACACATGACCT 59.904 50.000 23.60 0.00 0.00 3.85
2496 2828 2.029606 CGAGCTACGTACGTACACATGA 59.970 50.000 23.60 4.28 37.22 3.07
2599 2931 2.296471 AGACCGAATACAATAGCCTCCG 59.704 50.000 0.00 0.00 0.00 4.63
2689 3022 3.177600 CGGTTTGATCCGGTGCAG 58.822 61.111 0.00 0.00 45.88 4.41
2749 3082 8.565416 CCGTTTCTTGGTTTAGACTTTAAAGAT 58.435 33.333 21.92 11.76 0.00 2.40
2828 3171 0.038343 GGCATGTGTTTGCACCGATT 60.038 50.000 0.00 0.00 44.59 3.34
2836 3179 2.568090 GAGGCCGGCATGTGTTTG 59.432 61.111 30.85 0.00 0.00 2.93
2878 3221 2.091541 ACATTTTGTATGGCTCACCCG 58.908 47.619 0.00 0.00 35.87 5.28
2969 3313 5.673337 TCTGTCGAAAGATGTGGAAAAAG 57.327 39.130 0.00 0.00 45.19 2.27
2977 3321 4.808414 TTCCAGATCTGTCGAAAGATGT 57.192 40.909 22.94 16.14 45.19 3.06
3088 3432 1.541475 CGTCTAGCGAACGCATGTTA 58.459 50.000 20.66 4.13 44.77 2.41
3102 3446 4.614535 GCGAGAAAACTAGTGTTCCGTCTA 60.615 45.833 24.87 0.00 34.96 2.59
3192 3536 2.230750 AGTTACCCGACTCAGCACTTAC 59.769 50.000 0.00 0.00 0.00 2.34
3193 3537 2.522185 AGTTACCCGACTCAGCACTTA 58.478 47.619 0.00 0.00 0.00 2.24
3194 3538 1.339097 AGTTACCCGACTCAGCACTT 58.661 50.000 0.00 0.00 0.00 3.16
3195 3539 1.339097 AAGTTACCCGACTCAGCACT 58.661 50.000 0.00 0.00 0.00 4.40
3196 3540 2.165319 AAAGTTACCCGACTCAGCAC 57.835 50.000 0.00 0.00 0.00 4.40
3197 3541 2.922740 AAAAGTTACCCGACTCAGCA 57.077 45.000 0.00 0.00 0.00 4.41
3776 4149 4.606071 CTTGGTGAGCTCCTTCCG 57.394 61.111 12.15 0.00 0.00 4.30
3846 4219 2.996444 TGCCATGATTAGCAGCTCG 58.004 52.632 0.00 0.00 33.08 5.03
4094 4468 5.183014 AGAATCTCAAACCAAAACCGAAC 57.817 39.130 0.00 0.00 0.00 3.95
4105 4479 5.632347 CAGATTGCACCAAAGAATCTCAAAC 59.368 40.000 0.00 0.00 34.82 2.93
4220 4594 4.812091 TGTTGTGTGTGGTACTGAACATAC 59.188 41.667 13.03 13.03 38.47 2.39
4221 4595 5.024785 TGTTGTGTGTGGTACTGAACATA 57.975 39.130 0.00 0.00 30.89 2.29
4222 4596 3.879998 TGTTGTGTGTGGTACTGAACAT 58.120 40.909 0.00 0.00 30.89 2.71
4223 4597 3.336138 TGTTGTGTGTGGTACTGAACA 57.664 42.857 0.00 0.00 32.36 3.18
4224 4598 4.155280 ACTTTGTTGTGTGTGGTACTGAAC 59.845 41.667 0.00 0.00 0.00 3.18
4225 4599 4.328536 ACTTTGTTGTGTGTGGTACTGAA 58.671 39.130 0.00 0.00 0.00 3.02
4226 4600 3.945346 ACTTTGTTGTGTGTGGTACTGA 58.055 40.909 0.00 0.00 0.00 3.41
4227 4601 5.804692 TTACTTTGTTGTGTGTGGTACTG 57.195 39.130 0.00 0.00 0.00 2.74
4228 4602 6.600032 TGATTTACTTTGTTGTGTGTGGTACT 59.400 34.615 0.00 0.00 0.00 2.73
4268 4642 9.698309 CATGTTAGGACAACGAGAATAGATATT 57.302 33.333 0.00 0.00 39.66 1.28
4331 4705 9.511144 GAGAATCTGCTAAAGTTACTCTAAGTC 57.489 37.037 0.00 0.00 0.00 3.01
4359 4734 4.127171 GAGACTTGGCAAGACTGTTTACA 58.873 43.478 31.27 0.00 33.75 2.41
4384 4759 5.376625 TGGCAAGACTGTTTACAAGAGAAT 58.623 37.500 0.00 0.00 0.00 2.40
4385 4760 4.776349 TGGCAAGACTGTTTACAAGAGAA 58.224 39.130 0.00 0.00 0.00 2.87
4386 4761 4.415881 TGGCAAGACTGTTTACAAGAGA 57.584 40.909 0.00 0.00 0.00 3.10
4387 4762 4.576463 ACTTGGCAAGACTGTTTACAAGAG 59.424 41.667 32.50 2.02 37.75 2.85
4389 4764 4.900635 ACTTGGCAAGACTGTTTACAAG 57.099 40.909 32.50 3.20 39.60 3.16
4391 4766 4.702612 TCAAACTTGGCAAGACTGTTTACA 59.297 37.500 32.50 10.84 30.89 2.41
4392 4767 5.163652 ACTCAAACTTGGCAAGACTGTTTAC 60.164 40.000 32.50 0.00 30.89 2.01
4393 4768 4.947388 ACTCAAACTTGGCAAGACTGTTTA 59.053 37.500 32.50 12.08 30.89 2.01
4394 4769 3.763897 ACTCAAACTTGGCAAGACTGTTT 59.236 39.130 32.50 19.70 0.00 2.83
4395 4770 3.356290 ACTCAAACTTGGCAAGACTGTT 58.644 40.909 32.50 14.93 0.00 3.16
4396 4771 2.945668 GACTCAAACTTGGCAAGACTGT 59.054 45.455 32.50 20.82 0.00 3.55
4397 4772 2.032549 CGACTCAAACTTGGCAAGACTG 60.033 50.000 32.50 25.25 0.00 3.51
4398 4773 2.158957 TCGACTCAAACTTGGCAAGACT 60.159 45.455 32.50 16.41 0.00 3.24
4399 4774 2.210116 TCGACTCAAACTTGGCAAGAC 58.790 47.619 32.50 12.88 0.00 3.01
4400 4775 2.613026 TCGACTCAAACTTGGCAAGA 57.387 45.000 32.50 10.39 0.00 3.02
4401 4776 2.666619 GCATCGACTCAAACTTGGCAAG 60.667 50.000 25.06 25.06 0.00 4.01
4402 4777 1.266718 GCATCGACTCAAACTTGGCAA 59.733 47.619 0.00 0.00 0.00 4.52
4403 4778 0.874390 GCATCGACTCAAACTTGGCA 59.126 50.000 0.00 0.00 0.00 4.92
4404 4779 1.160137 AGCATCGACTCAAACTTGGC 58.840 50.000 0.00 0.00 0.00 4.52
4405 4780 2.345641 CGTAGCATCGACTCAAACTTGG 59.654 50.000 0.00 0.00 0.00 3.61
4406 4781 2.987149 ACGTAGCATCGACTCAAACTTG 59.013 45.455 7.49 0.00 34.70 3.16
4407 4782 3.299340 ACGTAGCATCGACTCAAACTT 57.701 42.857 7.49 0.00 34.70 2.66
4408 4783 3.727079 CGTACGTAGCATCGACTCAAACT 60.727 47.826 7.22 0.00 34.70 2.66
4409 4784 2.525096 CGTACGTAGCATCGACTCAAAC 59.475 50.000 7.22 0.00 34.70 2.93
4410 4785 2.777494 CGTACGTAGCATCGACTCAAA 58.223 47.619 7.22 0.00 34.70 2.69
4411 4786 1.530441 GCGTACGTAGCATCGACTCAA 60.530 52.381 17.90 0.00 34.70 3.02
4412 4787 0.027194 GCGTACGTAGCATCGACTCA 59.973 55.000 17.90 0.00 34.70 3.41
4413 4788 0.985902 CGCGTACGTAGCATCGACTC 60.986 60.000 17.90 0.00 34.70 3.36
4414 4789 1.011463 CGCGTACGTAGCATCGACT 60.011 57.895 17.90 0.00 34.70 4.18
4415 4790 0.985902 CTCGCGTACGTAGCATCGAC 60.986 60.000 17.90 0.00 41.18 4.20
4416 4791 1.147557 TCTCGCGTACGTAGCATCGA 61.148 55.000 17.90 14.35 41.18 3.59
4417 4792 0.110778 ATCTCGCGTACGTAGCATCG 60.111 55.000 17.90 10.63 41.18 3.84
4418 4793 1.194997 AGATCTCGCGTACGTAGCATC 59.805 52.381 17.90 16.37 41.18 3.91
4419 4794 1.227639 AGATCTCGCGTACGTAGCAT 58.772 50.000 17.90 9.88 41.18 3.79
4420 4795 1.012086 AAGATCTCGCGTACGTAGCA 58.988 50.000 17.90 5.90 41.18 3.49
4421 4796 2.102474 AAAGATCTCGCGTACGTAGC 57.898 50.000 17.90 1.01 41.18 3.58
4422 4797 5.075670 TCTTAAAGATCTCGCGTACGTAG 57.924 43.478 17.90 14.49 41.18 3.51
4423 4798 5.663795 ATCTTAAAGATCTCGCGTACGTA 57.336 39.130 17.90 4.68 32.99 3.57
4424 4799 4.525686 GATCTTAAAGATCTCGCGTACGT 58.474 43.478 17.90 0.00 45.83 3.57
4467 4842 9.748100 GACGTAAAATGCAAAAGAAAAAGAAAA 57.252 25.926 0.00 0.00 0.00 2.29
4468 4843 8.926710 TGACGTAAAATGCAAAAGAAAAAGAAA 58.073 25.926 0.00 0.00 0.00 2.52
4469 4844 8.376942 GTGACGTAAAATGCAAAAGAAAAAGAA 58.623 29.630 0.00 0.00 0.00 2.52
4470 4845 7.757624 AGTGACGTAAAATGCAAAAGAAAAAGA 59.242 29.630 0.00 0.00 0.00 2.52
4471 4846 7.894847 AGTGACGTAAAATGCAAAAGAAAAAG 58.105 30.769 0.00 0.00 0.00 2.27
4472 4847 7.820044 AGTGACGTAAAATGCAAAAGAAAAA 57.180 28.000 0.00 0.00 0.00 1.94
4473 4848 7.542477 TCAAGTGACGTAAAATGCAAAAGAAAA 59.458 29.630 0.00 0.00 0.00 2.29
4474 4849 7.030165 TCAAGTGACGTAAAATGCAAAAGAAA 58.970 30.769 0.00 0.00 0.00 2.52
4475 4850 6.556212 TCAAGTGACGTAAAATGCAAAAGAA 58.444 32.000 0.00 0.00 0.00 2.52
4476 4851 6.125327 TCAAGTGACGTAAAATGCAAAAGA 57.875 33.333 0.00 0.00 0.00 2.52
4477 4852 6.991485 ATCAAGTGACGTAAAATGCAAAAG 57.009 33.333 0.00 0.00 0.00 2.27
4478 4853 7.763172 AAATCAAGTGACGTAAAATGCAAAA 57.237 28.000 0.00 0.00 0.00 2.44
4479 4854 8.346300 TCTAAATCAAGTGACGTAAAATGCAAA 58.654 29.630 0.00 0.00 0.00 3.68
4480 4855 7.866729 TCTAAATCAAGTGACGTAAAATGCAA 58.133 30.769 0.00 0.00 0.00 4.08
4481 4856 7.386573 TCTCTAAATCAAGTGACGTAAAATGCA 59.613 33.333 0.00 0.00 0.00 3.96
4482 4857 7.688578 GTCTCTAAATCAAGTGACGTAAAATGC 59.311 37.037 0.00 0.00 32.26 3.56
4483 4858 8.708742 TGTCTCTAAATCAAGTGACGTAAAATG 58.291 33.333 0.00 0.00 40.97 2.32
4484 4859 8.827177 TGTCTCTAAATCAAGTGACGTAAAAT 57.173 30.769 0.00 0.00 40.97 1.82
4485 4860 8.651391 TTGTCTCTAAATCAAGTGACGTAAAA 57.349 30.769 0.00 0.00 40.97 1.52
4486 4861 8.651391 TTTGTCTCTAAATCAAGTGACGTAAA 57.349 30.769 0.00 0.00 40.97 2.01
4487 4862 8.139350 TCTTTGTCTCTAAATCAAGTGACGTAA 58.861 33.333 0.00 0.00 40.97 3.18
4488 4863 7.654568 TCTTTGTCTCTAAATCAAGTGACGTA 58.345 34.615 0.00 0.00 40.97 3.57
4489 4864 6.513180 TCTTTGTCTCTAAATCAAGTGACGT 58.487 36.000 0.00 0.00 40.97 4.34
4490 4865 7.408132 TTCTTTGTCTCTAAATCAAGTGACG 57.592 36.000 0.00 0.00 40.97 4.35
4491 4866 8.165428 CGATTCTTTGTCTCTAAATCAAGTGAC 58.835 37.037 0.00 0.00 39.38 3.67
4492 4867 7.331934 CCGATTCTTTGTCTCTAAATCAAGTGA 59.668 37.037 0.00 0.00 0.00 3.41
4493 4868 7.118390 ACCGATTCTTTGTCTCTAAATCAAGTG 59.882 37.037 0.00 0.00 0.00 3.16
4494 4869 7.162082 ACCGATTCTTTGTCTCTAAATCAAGT 58.838 34.615 0.00 0.00 0.00 3.16
4495 4870 7.602517 ACCGATTCTTTGTCTCTAAATCAAG 57.397 36.000 0.00 0.00 0.00 3.02
4496 4871 7.979444 AACCGATTCTTTGTCTCTAAATCAA 57.021 32.000 0.00 0.00 0.00 2.57
4497 4872 9.496873 TTTAACCGATTCTTTGTCTCTAAATCA 57.503 29.630 0.00 0.00 0.00 2.57
4500 4875 9.280174 ACATTTAACCGATTCTTTGTCTCTAAA 57.720 29.630 0.00 0.00 0.00 1.85
4501 4876 8.842358 ACATTTAACCGATTCTTTGTCTCTAA 57.158 30.769 0.00 0.00 0.00 2.10
4502 4877 8.842358 AACATTTAACCGATTCTTTGTCTCTA 57.158 30.769 0.00 0.00 0.00 2.43
4503 4878 7.745620 AACATTTAACCGATTCTTTGTCTCT 57.254 32.000 0.00 0.00 0.00 3.10
4504 4879 8.718734 ACTAACATTTAACCGATTCTTTGTCTC 58.281 33.333 0.00 0.00 0.00 3.36
4505 4880 8.617290 ACTAACATTTAACCGATTCTTTGTCT 57.383 30.769 0.00 0.00 0.00 3.41
4506 4881 9.113876 CAACTAACATTTAACCGATTCTTTGTC 57.886 33.333 0.00 0.00 0.00 3.18
4507 4882 8.842280 TCAACTAACATTTAACCGATTCTTTGT 58.158 29.630 0.00 0.00 0.00 2.83
4508 4883 9.113876 GTCAACTAACATTTAACCGATTCTTTG 57.886 33.333 0.00 0.00 0.00 2.77
4509 4884 9.063615 AGTCAACTAACATTTAACCGATTCTTT 57.936 29.630 0.00 0.00 0.00 2.52
4510 4885 8.504005 CAGTCAACTAACATTTAACCGATTCTT 58.496 33.333 0.00 0.00 0.00 2.52
4511 4886 7.876068 TCAGTCAACTAACATTTAACCGATTCT 59.124 33.333 0.00 0.00 0.00 2.40
4512 4887 8.025243 TCAGTCAACTAACATTTAACCGATTC 57.975 34.615 0.00 0.00 0.00 2.52
4513 4888 7.876068 TCTCAGTCAACTAACATTTAACCGATT 59.124 33.333 0.00 0.00 0.00 3.34
4514 4889 7.383687 TCTCAGTCAACTAACATTTAACCGAT 58.616 34.615 0.00 0.00 0.00 4.18
4515 4890 6.751157 TCTCAGTCAACTAACATTTAACCGA 58.249 36.000 0.00 0.00 0.00 4.69
4516 4891 7.545965 AGATCTCAGTCAACTAACATTTAACCG 59.454 37.037 0.00 0.00 0.00 4.44
4517 4892 8.779354 AGATCTCAGTCAACTAACATTTAACC 57.221 34.615 0.00 0.00 0.00 2.85
4519 4894 9.587772 GCTAGATCTCAGTCAACTAACATTTAA 57.412 33.333 0.00 0.00 0.00 1.52
4520 4895 8.198109 GGCTAGATCTCAGTCAACTAACATTTA 58.802 37.037 0.00 0.00 0.00 1.40
4521 4896 7.044798 GGCTAGATCTCAGTCAACTAACATTT 58.955 38.462 0.00 0.00 0.00 2.32
4522 4897 6.155221 TGGCTAGATCTCAGTCAACTAACATT 59.845 38.462 0.00 0.00 0.00 2.71
4523 4898 5.658634 TGGCTAGATCTCAGTCAACTAACAT 59.341 40.000 0.00 0.00 0.00 2.71
4531 4906 2.103373 GGTGTGGCTAGATCTCAGTCA 58.897 52.381 0.00 0.17 0.00 3.41
4534 4909 4.406456 AGATAGGTGTGGCTAGATCTCAG 58.594 47.826 0.00 0.00 0.00 3.35
4540 4915 6.045695 AGGTTCTATAGATAGGTGTGGCTAGA 59.954 42.308 2.58 0.00 0.00 2.43
4545 4920 8.651589 TTATGAGGTTCTATAGATAGGTGTGG 57.348 38.462 2.58 0.00 0.00 4.17
4583 5001 9.703892 ATCATGGTCGAAAAATAAAACATTCAA 57.296 25.926 0.00 0.00 0.00 2.69
4611 5029 1.422402 TCTTACGGGCTGGGTCTTTTT 59.578 47.619 0.00 0.00 0.00 1.94
4612 5030 1.061546 TCTTACGGGCTGGGTCTTTT 58.938 50.000 0.00 0.00 0.00 2.27
4613 5031 1.061546 TTCTTACGGGCTGGGTCTTT 58.938 50.000 0.00 0.00 0.00 2.52
4614 5032 1.286248 ATTCTTACGGGCTGGGTCTT 58.714 50.000 0.00 0.00 0.00 3.01
4615 5033 2.170012 TATTCTTACGGGCTGGGTCT 57.830 50.000 0.00 0.00 0.00 3.85
4616 5034 3.322828 TGTATATTCTTACGGGCTGGGTC 59.677 47.826 0.00 0.00 0.00 4.46
4617 5035 3.311091 TGTATATTCTTACGGGCTGGGT 58.689 45.455 0.00 0.00 0.00 4.51
4618 5036 4.345859 TTGTATATTCTTACGGGCTGGG 57.654 45.455 0.00 0.00 0.00 4.45
4619 5037 5.238650 CCTTTTGTATATTCTTACGGGCTGG 59.761 44.000 0.00 0.00 0.00 4.85
4620 5038 6.018180 GTCCTTTTGTATATTCTTACGGGCTG 60.018 42.308 0.00 0.00 0.00 4.85
4621 5039 6.053650 GTCCTTTTGTATATTCTTACGGGCT 58.946 40.000 0.00 0.00 0.00 5.19
4641 5059 5.453480 GGCGAAGTCAGAAATATAAGGTCCT 60.453 44.000 0.00 0.00 0.00 3.85
4656 5074 5.597806 CCAGTAAATATAGTGGCGAAGTCA 58.402 41.667 0.00 0.00 43.82 3.41
4677 5095 1.217689 CCCTAAATTGGCCAGGATCCA 59.782 52.381 15.82 0.00 0.00 3.41
4678 5096 1.217942 ACCCTAAATTGGCCAGGATCC 59.782 52.381 13.13 2.48 0.00 3.36
4725 5143 1.414181 AGTATGGGGATTGCGACAGAG 59.586 52.381 0.00 0.00 0.00 3.35
4729 5147 0.600255 CGGAGTATGGGGATTGCGAC 60.600 60.000 0.00 0.00 0.00 5.19
4738 5156 5.157940 AGAATCAATCATCGGAGTATGGG 57.842 43.478 0.00 0.00 0.00 4.00
4739 5157 5.106791 GCAAGAATCAATCATCGGAGTATGG 60.107 44.000 0.00 0.00 0.00 2.74
4749 5167 4.278919 TGTGTGTGTGCAAGAATCAATCAT 59.721 37.500 0.00 0.00 0.00 2.45
4750 5168 3.631227 TGTGTGTGTGCAAGAATCAATCA 59.369 39.130 0.00 0.00 0.00 2.57
4753 5171 2.751806 TGTGTGTGTGTGCAAGAATCAA 59.248 40.909 0.00 0.00 0.00 2.57
4760 5178 2.402572 CGGGTGTGTGTGTGTGCAA 61.403 57.895 0.00 0.00 0.00 4.08
4763 5181 1.329292 CTAAACGGGTGTGTGTGTGTG 59.671 52.381 0.00 0.00 0.00 3.82
4764 5182 1.207570 TCTAAACGGGTGTGTGTGTGT 59.792 47.619 0.00 0.00 0.00 3.72
4772 5190 4.481368 TTGATATGCTCTAAACGGGTGT 57.519 40.909 0.00 0.00 0.00 4.16
4788 5206 2.377628 GACCTCGGCCGCCATTGATA 62.378 60.000 23.51 0.00 0.00 2.15
4822 5241 2.597217 TGGTTGCAGGAAAGGGCG 60.597 61.111 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.