Multiple sequence alignment - TraesCS4A01G197700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G197700 chr4A 100.000 5869 0 0 1 5869 481421804 481415936 0.000000e+00 10839.0
1 TraesCS4A01G197700 chr4A 90.500 400 33 2 1 397 494038855 494039252 1.870000e-144 523.0
2 TraesCS4A01G197700 chr4A 81.571 331 45 10 2065 2391 481410286 481410604 5.830000e-65 259.0
3 TraesCS4A01G197700 chr4B 97.382 2636 56 7 895 3519 136669700 136672333 0.000000e+00 4473.0
4 TraesCS4A01G197700 chr4B 93.665 1547 68 13 3599 5119 136672442 136673984 0.000000e+00 2287.0
5 TraesCS4A01G197700 chr4B 82.779 331 41 10 2065 2391 136679554 136679236 1.250000e-71 281.0
6 TraesCS4A01G197700 chr4B 77.723 202 23 12 5673 5862 667890568 667890759 2.890000e-18 104.0
7 TraesCS4A01G197700 chr4B 96.154 52 2 0 784 835 539872808 539872859 1.050000e-12 86.1
8 TraesCS4A01G197700 chr4B 95.455 44 2 0 5673 5716 253175681 253175638 2.930000e-08 71.3
9 TraesCS4A01G197700 chr4D 96.552 2407 64 12 692 3090 96605954 96608349 0.000000e+00 3967.0
10 TraesCS4A01G197700 chr4D 96.800 1375 36 4 3604 4977 96608857 96610224 0.000000e+00 2289.0
11 TraesCS4A01G197700 chr4D 88.452 1169 94 24 1951 3093 20909271 20910424 0.000000e+00 1373.0
12 TraesCS4A01G197700 chr4D 89.740 692 62 5 4985 5674 96617272 96617956 0.000000e+00 876.0
13 TraesCS4A01G197700 chr4D 88.211 738 73 3 4327 5064 20910453 20911176 0.000000e+00 869.0
14 TraesCS4A01G197700 chr4D 89.339 666 66 4 33 694 480182132 480182796 0.000000e+00 832.0
15 TraesCS4A01G197700 chr4D 98.313 415 7 0 3105 3519 96608332 96608746 0.000000e+00 728.0
16 TraesCS4A01G197700 chr4D 81.873 331 44 10 2065 2391 96626628 96626310 1.250000e-66 265.0
17 TraesCS4A01G197700 chr4D 95.238 63 3 0 3516 3578 96608794 96608856 3.740000e-17 100.0
18 TraesCS4A01G197700 chr6B 88.988 672 71 2 26 694 618947934 618947263 0.000000e+00 828.0
19 TraesCS4A01G197700 chr6B 85.333 75 7 4 795 867 628485634 628485706 2.270000e-09 75.0
20 TraesCS4A01G197700 chr6D 88.939 669 68 1 26 694 466547969 466548631 0.000000e+00 821.0
21 TraesCS4A01G197700 chr6D 97.959 49 1 0 787 835 33963732 33963684 1.050000e-12 86.1
22 TraesCS4A01G197700 chr1A 87.554 691 61 13 16 694 496145942 496146619 0.000000e+00 776.0
23 TraesCS4A01G197700 chr1A 88.853 619 63 4 26 639 382733653 382733036 0.000000e+00 756.0
24 TraesCS4A01G197700 chr1A 86.538 676 71 12 26 697 382732908 382732249 0.000000e+00 726.0
25 TraesCS4A01G197700 chr1A 89.346 413 39 3 282 694 219113242 219113649 1.130000e-141 514.0
26 TraesCS4A01G197700 chr2D 87.278 676 78 5 26 698 378361334 378362004 0.000000e+00 765.0
27 TraesCS4A01G197700 chr5B 89.501 381 38 1 26 406 435162136 435162514 1.140000e-131 481.0
28 TraesCS4A01G197700 chr5B 97.917 48 1 0 788 835 440031311 440031264 3.770000e-12 84.2
29 TraesCS4A01G197700 chr6A 78.392 199 15 19 5673 5862 515409126 515408947 2.890000e-18 104.0
30 TraesCS4A01G197700 chr3D 98.039 51 1 0 787 837 113472642 113472592 8.100000e-14 89.8
31 TraesCS4A01G197700 chr3D 82.178 101 9 4 5673 5765 19562642 19562543 1.750000e-10 78.7
32 TraesCS4A01G197700 chr3D 90.000 60 4 1 788 847 267110611 267110554 6.310000e-10 76.8
33 TraesCS4A01G197700 chr3B 96.154 52 2 0 786 837 762017058 762017109 1.050000e-12 86.1
34 TraesCS4A01G197700 chr1D 81.739 115 10 7 5673 5777 378705170 378705283 1.050000e-12 86.1
35 TraesCS4A01G197700 chrUn 96.000 50 2 0 788 837 67634466 67634417 1.360000e-11 82.4
36 TraesCS4A01G197700 chr7B 75.000 196 34 13 5673 5858 730396819 730397009 6.310000e-10 76.8
37 TraesCS4A01G197700 chr7D 95.455 44 2 0 5673 5716 614282127 614282084 2.930000e-08 71.3
38 TraesCS4A01G197700 chr5A 95.455 44 2 0 5673 5716 1750832 1750875 2.930000e-08 71.3
39 TraesCS4A01G197700 chr2B 95.556 45 1 1 5673 5716 551450892 551450848 2.930000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G197700 chr4A 481415936 481421804 5868 True 10839 10839 100.00000 1 5869 1 chr4A.!!$R1 5868
1 TraesCS4A01G197700 chr4B 136669700 136673984 4284 False 3380 4473 95.52350 895 5119 2 chr4B.!!$F3 4224
2 TraesCS4A01G197700 chr4D 96605954 96610224 4270 False 1771 3967 96.72575 692 4977 4 chr4D.!!$F4 4285
3 TraesCS4A01G197700 chr4D 20909271 20911176 1905 False 1121 1373 88.33150 1951 5064 2 chr4D.!!$F3 3113
4 TraesCS4A01G197700 chr4D 96617272 96617956 684 False 876 876 89.74000 4985 5674 1 chr4D.!!$F1 689
5 TraesCS4A01G197700 chr4D 480182132 480182796 664 False 832 832 89.33900 33 694 1 chr4D.!!$F2 661
6 TraesCS4A01G197700 chr6B 618947263 618947934 671 True 828 828 88.98800 26 694 1 chr6B.!!$R1 668
7 TraesCS4A01G197700 chr6D 466547969 466548631 662 False 821 821 88.93900 26 694 1 chr6D.!!$F1 668
8 TraesCS4A01G197700 chr1A 496145942 496146619 677 False 776 776 87.55400 16 694 1 chr1A.!!$F2 678
9 TraesCS4A01G197700 chr1A 382732249 382733653 1404 True 741 756 87.69550 26 697 2 chr1A.!!$R1 671
10 TraesCS4A01G197700 chr2D 378361334 378362004 670 False 765 765 87.27800 26 698 1 chr2D.!!$F1 672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
700 1458 0.036388 TTTGTCCGCCTCCAGCTAAG 60.036 55.0 0.00 0.00 40.39 2.18 F
703 1461 0.460459 GTCCGCCTCCAGCTAAGTTC 60.460 60.0 0.00 0.00 40.39 3.01 F
2590 3387 0.250124 TGGGTGTGCCAGTTTACTCG 60.250 55.0 0.00 0.00 36.17 4.18 F
2600 3397 2.038033 CCAGTTTACTCGGAAGGAACCA 59.962 50.0 0.00 0.00 0.00 3.67 F
2915 3713 2.093235 GGAAGCTGCAGGTATCTGTCTT 60.093 50.0 20.51 8.76 42.78 3.01 F
3784 4668 2.122783 TCAAATTTGTAGGGCGAGGG 57.877 50.0 17.47 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1794 2554 0.655733 AATTCCTTAACGGCATCGCG 59.344 50.000 0.00 0.0 40.63 5.87 R
2600 3397 0.827507 ATTTCTGCAGGTTTGGCCGT 60.828 50.000 15.13 0.0 43.70 5.68 R
3784 4668 0.462759 CAAGGTCCTCCATTCGCTCC 60.463 60.000 0.00 0.0 35.89 4.70 R
4550 5434 1.669115 CGACCAGTTGGCTCACCTG 60.669 63.158 0.00 0.0 39.32 4.00 R
4693 5577 1.002888 CTCATTCACACTGCCAGAGGT 59.997 52.381 0.00 0.0 0.00 3.85 R
5605 6513 0.034896 TTTCCCGAGTTGACAGAGCC 59.965 55.000 0.00 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.959495 AACTCTGGTCCCATAATGCAT 57.041 42.857 0.00 0.00 0.00 3.96
21 22 3.498774 ACTCTGGTCCCATAATGCATC 57.501 47.619 0.00 0.00 0.00 3.91
22 23 3.051581 ACTCTGGTCCCATAATGCATCT 58.948 45.455 0.00 0.00 0.00 2.90
89 90 1.948104 ACGTGCTCTAACTGCAAACA 58.052 45.000 0.00 0.00 42.41 2.83
138 147 1.323534 CGCGGTAACATTTCTTCCTCG 59.676 52.381 0.00 0.00 0.00 4.63
141 150 2.597305 CGGTAACATTTCTTCCTCGACG 59.403 50.000 0.00 0.00 0.00 5.12
152 161 1.241165 TCCTCGACGCACTAAACTCA 58.759 50.000 0.00 0.00 0.00 3.41
227 244 4.295201 ACTAACACTGGATGCCCTATACA 58.705 43.478 0.00 0.00 0.00 2.29
230 247 2.050144 CACTGGATGCCCTATACACCT 58.950 52.381 0.00 0.00 0.00 4.00
301 318 9.167311 GATATGCCTTAATAGATAACAGGGTTG 57.833 37.037 0.00 0.00 0.00 3.77
351 368 2.039084 AGACAAATCCGCTCAAAGGAGT 59.961 45.455 0.00 0.00 43.37 3.85
374 394 3.668596 AACTCGTGTTTGTGTAAGCAC 57.331 42.857 0.00 0.00 42.47 4.40
459 480 8.084985 TCTCCATCTAACAACAATGTGGTATA 57.915 34.615 0.00 0.00 40.46 1.47
584 613 8.590470 CAGTGTATCATCGAGTATTTGATATGC 58.410 37.037 8.49 5.69 35.46 3.14
651 1409 1.872952 CGCAGGAACTCAATGACACAA 59.127 47.619 0.00 0.00 34.60 3.33
656 1414 6.623549 CGCAGGAACTCAATGACACAAATATT 60.624 38.462 0.00 0.00 34.60 1.28
700 1458 0.036388 TTTGTCCGCCTCCAGCTAAG 60.036 55.000 0.00 0.00 40.39 2.18
703 1461 0.460459 GTCCGCCTCCAGCTAAGTTC 60.460 60.000 0.00 0.00 40.39 3.01
715 1473 8.646900 CCTCCAGCTAAGTTCTCTTTATTATCT 58.353 37.037 0.00 0.00 35.36 1.98
751 1509 6.426587 AGATATTGGTAGACATGTTTGGCTT 58.573 36.000 0.00 0.00 38.38 4.35
752 1510 4.789012 ATTGGTAGACATGTTTGGCTTG 57.211 40.909 0.00 0.00 38.38 4.01
754 1512 4.359434 TGGTAGACATGTTTGGCTTGTA 57.641 40.909 0.00 0.00 38.38 2.41
755 1513 4.323417 TGGTAGACATGTTTGGCTTGTAG 58.677 43.478 0.00 0.00 38.38 2.74
796 1554 8.349983 TGAACCTTCTTGAGCAATAAAAACTAC 58.650 33.333 0.00 0.00 0.00 2.73
798 1556 8.100508 ACCTTCTTGAGCAATAAAAACTACTC 57.899 34.615 0.00 0.00 0.00 2.59
799 1557 7.175119 ACCTTCTTGAGCAATAAAAACTACTCC 59.825 37.037 0.00 0.00 0.00 3.85
803 1561 5.497474 TGAGCAATAAAAACTACTCCCTCC 58.503 41.667 0.00 0.00 0.00 4.30
815 1573 3.339713 ACTCCCTCCGTCCCATAATAA 57.660 47.619 0.00 0.00 0.00 1.40
820 1578 4.722781 TCCCTCCGTCCCATAATAAAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
842 1600 5.379757 ACGTTTTTGACACTAGTACGTTG 57.620 39.130 11.00 0.00 35.17 4.10
846 1604 6.737750 CGTTTTTGACACTAGTACGTTGTTTT 59.262 34.615 0.00 0.00 0.00 2.43
848 1606 7.599630 TTTTGACACTAGTACGTTGTTTTCT 57.400 32.000 0.00 0.00 0.00 2.52
936 1694 2.045536 CCTGCAGCCTCCAGAACC 60.046 66.667 8.66 0.00 32.03 3.62
944 1702 2.434331 CTCCAGAACCCGGGCAAA 59.566 61.111 24.08 0.00 0.00 3.68
975 1733 2.178984 CCACCTCTCCTCTTATCCTCCT 59.821 54.545 0.00 0.00 0.00 3.69
1003 1761 2.731571 CCTCGCTCCCCGGAAATGA 61.732 63.158 0.73 0.00 37.59 2.57
1016 1774 2.683742 CGGAAATGAAGGCCACCACTAT 60.684 50.000 5.01 0.00 0.00 2.12
1187 1945 1.545651 CCCCGCTTTCTTGGTTCTTCT 60.546 52.381 0.00 0.00 0.00 2.85
1329 2087 3.461773 CTCACCACCGGGCTCGAT 61.462 66.667 8.08 0.00 39.00 3.59
1548 2306 6.688813 GTCAGTGTTCATTTCTGTCTTTGAAC 59.311 38.462 7.50 7.50 45.11 3.18
1611 2370 0.887387 TGCAGGTTAGTTTGCCGGTC 60.887 55.000 1.90 0.00 39.54 4.79
1680 2439 1.684983 GTTATCCGAGGAATCCGACCA 59.315 52.381 0.00 0.00 0.00 4.02
1811 2571 1.079681 ACGCGATGCCGTTAAGGAA 60.080 52.632 15.93 0.00 45.00 3.36
2252 3030 6.936335 CCTTGGCCTTTATTTTTGACAATCTT 59.064 34.615 3.32 0.00 0.00 2.40
2253 3031 8.093927 CCTTGGCCTTTATTTTTGACAATCTTA 58.906 33.333 3.32 0.00 0.00 2.10
2254 3032 9.487790 CTTGGCCTTTATTTTTGACAATCTTAA 57.512 29.630 3.32 0.00 0.00 1.85
2590 3387 0.250124 TGGGTGTGCCAGTTTACTCG 60.250 55.000 0.00 0.00 36.17 4.18
2600 3397 2.038033 CCAGTTTACTCGGAAGGAACCA 59.962 50.000 0.00 0.00 0.00 3.67
2915 3713 2.093235 GGAAGCTGCAGGTATCTGTCTT 60.093 50.000 20.51 8.76 42.78 3.01
2922 3720 5.391416 GCTGCAGGTATCTGTCTTTTTCTTC 60.391 44.000 17.12 0.00 42.78 2.87
3085 3883 6.544038 AATTTTGGATGCTTTAAAGTGCAC 57.456 33.333 16.38 9.40 42.26 4.57
3086 3884 4.935352 TTTGGATGCTTTAAAGTGCACT 57.065 36.364 15.25 15.25 42.26 4.40
3087 3885 4.935352 TTGGATGCTTTAAAGTGCACTT 57.065 36.364 26.36 26.36 42.26 3.16
3088 3886 4.935352 TGGATGCTTTAAAGTGCACTTT 57.065 36.364 38.59 38.59 46.78 2.66
3089 3887 4.870363 TGGATGCTTTAAAGTGCACTTTC 58.130 39.130 40.27 28.14 44.34 2.62
3090 3888 4.237724 GGATGCTTTAAAGTGCACTTTCC 58.762 43.478 40.27 30.56 44.34 3.13
3091 3889 4.021981 GGATGCTTTAAAGTGCACTTTCCT 60.022 41.667 40.27 24.48 44.34 3.36
3092 3890 5.509670 GGATGCTTTAAAGTGCACTTTCCTT 60.510 40.000 40.27 24.14 44.34 3.36
3093 3891 4.932146 TGCTTTAAAGTGCACTTTCCTTC 58.068 39.130 40.27 28.15 44.34 3.46
3094 3892 4.400884 TGCTTTAAAGTGCACTTTCCTTCA 59.599 37.500 40.27 29.88 44.34 3.02
3095 3893 5.105554 TGCTTTAAAGTGCACTTTCCTTCAA 60.106 36.000 40.27 27.91 44.34 2.69
3096 3894 5.810074 GCTTTAAAGTGCACTTTCCTTCAAA 59.190 36.000 40.27 31.42 44.34 2.69
3097 3895 6.019559 GCTTTAAAGTGCACTTTCCTTCAAAG 60.020 38.462 40.27 36.79 44.34 2.77
3098 3896 3.443099 AAGTGCACTTTCCTTCAAAGC 57.557 42.857 26.36 0.00 45.00 3.51
3099 3897 2.378038 AGTGCACTTTCCTTCAAAGCA 58.622 42.857 15.25 0.00 45.00 3.91
3100 3898 2.961062 AGTGCACTTTCCTTCAAAGCAT 59.039 40.909 15.25 0.00 45.00 3.79
3101 3899 3.005155 AGTGCACTTTCCTTCAAAGCATC 59.995 43.478 15.25 0.00 45.00 3.91
3102 3900 3.005155 GTGCACTTTCCTTCAAAGCATCT 59.995 43.478 10.32 0.00 45.00 2.90
3103 3901 3.005050 TGCACTTTCCTTCAAAGCATCTG 59.995 43.478 0.00 0.00 45.00 2.90
3104 3902 3.613432 GCACTTTCCTTCAAAGCATCTGG 60.613 47.826 0.00 0.00 45.00 3.86
3105 3903 2.560105 ACTTTCCTTCAAAGCATCTGGC 59.440 45.455 0.00 0.00 45.00 4.85
3148 3978 7.605449 ACTCTAATGCTGCACAAAATAATGTT 58.395 30.769 3.57 0.00 0.00 2.71
3406 4237 5.428253 TCTCCCACATCATGCTTTTACTAC 58.572 41.667 0.00 0.00 0.00 2.73
3428 4259 4.576463 ACAAGTTGATATTTGGAGCGGATC 59.424 41.667 10.54 0.00 0.00 3.36
3446 4277 9.416794 GAGCGGATCATTGTCTATATATATTGG 57.583 37.037 0.00 0.00 0.00 3.16
3544 4426 4.136796 ACTTTTGCTCTGTGTGCATTAGA 58.863 39.130 0.00 0.00 40.34 2.10
3586 4468 9.996554 TTATCTTCTTCACTTGTATGTTGAGAA 57.003 29.630 0.00 0.00 0.00 2.87
3587 4469 8.908786 ATCTTCTTCACTTGTATGTTGAGAAA 57.091 30.769 0.00 0.00 0.00 2.52
3588 4470 8.908786 TCTTCTTCACTTGTATGTTGAGAAAT 57.091 30.769 0.00 0.00 0.00 2.17
3589 4471 9.996554 TCTTCTTCACTTGTATGTTGAGAAATA 57.003 29.630 0.00 0.00 0.00 1.40
3634 4516 6.105333 TGCCTATTTGCAAACATATTTCACC 58.895 36.000 15.41 0.00 38.56 4.02
3658 4540 6.824704 CCCAATCCGAAAACCTTAGTAATACA 59.175 38.462 0.00 0.00 0.00 2.29
3675 4557 6.763135 AGTAATACATGTGAGGTGCAAGTATG 59.237 38.462 9.11 0.00 0.00 2.39
3676 4558 3.701205 ACATGTGAGGTGCAAGTATGA 57.299 42.857 0.00 0.00 0.00 2.15
3678 4560 5.357742 ACATGTGAGGTGCAAGTATGATA 57.642 39.130 0.00 0.00 0.00 2.15
3680 4562 6.179756 ACATGTGAGGTGCAAGTATGATAAA 58.820 36.000 0.00 0.00 0.00 1.40
3715 4599 6.201044 CCTTTCTTCTGCTGGTATATGTAACG 59.799 42.308 0.00 0.00 0.00 3.18
3769 4653 2.238521 GTGTCTGGAAAGCCCATCAAA 58.761 47.619 0.00 0.00 45.57 2.69
3784 4668 2.122783 TCAAATTTGTAGGGCGAGGG 57.877 50.000 17.47 0.00 0.00 4.30
3962 4846 6.772360 TGATGGTTTCTATATGCTGCAAAA 57.228 33.333 6.36 0.00 0.00 2.44
4514 5398 3.139957 TCAGCATATTTGGCATTCCCCTA 59.860 43.478 0.00 0.00 0.00 3.53
4526 5410 3.245052 GCATTCCCCTACATGGAGCTAAT 60.245 47.826 0.00 0.00 38.35 1.73
4550 5434 3.427161 GCACTGCCATTTTCCACTATC 57.573 47.619 0.00 0.00 0.00 2.08
4693 5577 1.808945 GACGAGAAGGTAAGGACGACA 59.191 52.381 0.00 0.00 0.00 4.35
4736 5632 5.536538 AGGTTTCCTCCTGTCAATTTTCTTC 59.463 40.000 0.00 0.00 36.35 2.87
4926 5830 2.684881 GAGTTGTGGATTGGCATGTAGG 59.315 50.000 0.00 0.00 0.00 3.18
4978 5882 1.472082 TGTACATTTTGGCATGCCGAG 59.528 47.619 30.87 19.67 39.42 4.63
4983 5887 3.006323 ACATTTTGGCATGCCGAGTTTAA 59.994 39.130 30.87 20.18 39.42 1.52
5047 5951 6.884472 TGAGAGTGGAGGGAATTAATTACA 57.116 37.500 12.50 0.00 0.00 2.41
5146 6054 3.254470 TGGAAAAGACACAACAGACGA 57.746 42.857 0.00 0.00 0.00 4.20
5148 6056 2.034001 GGAAAAGACACAACAGACGACG 60.034 50.000 0.00 0.00 0.00 5.12
5149 6057 1.567504 AAAGACACAACAGACGACGG 58.432 50.000 0.00 0.00 0.00 4.79
5151 6059 2.645510 GACACAACAGACGACGGCG 61.646 63.158 10.39 10.39 44.79 6.46
5152 6060 2.354188 CACAACAGACGACGGCGA 60.354 61.111 22.49 0.00 41.64 5.54
5153 6061 2.354305 ACAACAGACGACGGCGAC 60.354 61.111 22.49 13.05 41.64 5.19
5168 6076 1.196808 GGCGACGATGACAACAACAAT 59.803 47.619 0.00 0.00 0.00 2.71
5169 6077 2.233355 GCGACGATGACAACAACAATG 58.767 47.619 0.00 0.00 0.00 2.82
5177 6085 4.717233 TGACAACAACAATGACAAAGCT 57.283 36.364 0.00 0.00 0.00 3.74
5180 6088 5.931146 TGACAACAACAATGACAAAGCTTTT 59.069 32.000 9.53 1.05 0.00 2.27
5183 6091 7.319646 ACAACAACAATGACAAAGCTTTTAGA 58.680 30.769 9.53 0.00 0.00 2.10
5216 6124 7.647907 TCGTAAGATCTCAAAACCAACTTAC 57.352 36.000 0.00 0.00 45.01 2.34
5218 6126 7.384115 TCGTAAGATCTCAAAACCAACTTACAG 59.616 37.037 0.04 0.00 45.01 2.74
5228 6136 8.527810 TCAAAACCAACTTACAGTTCTCAAAAT 58.472 29.630 0.00 0.00 36.03 1.82
5292 6200 8.699749 GCGCAAACCTATTATAAAATTTCATCC 58.300 33.333 0.30 0.00 0.00 3.51
5313 6221 6.418057 TCCAAAGTACAAAGCATTCCAAAT 57.582 33.333 0.00 0.00 0.00 2.32
5341 6249 2.799126 AATTACATTGAGGTGCCCGA 57.201 45.000 0.00 0.00 0.00 5.14
5365 6273 1.148310 CTGAACAACCACTACCAGCG 58.852 55.000 0.00 0.00 0.00 5.18
5368 6276 1.798813 GAACAACCACTACCAGCGAAG 59.201 52.381 0.00 0.00 0.00 3.79
5404 6312 3.787394 GAGGTCCTCGGAACACCA 58.213 61.111 2.28 0.00 33.52 4.17
5413 6321 1.064952 CTCGGAACACCAAACAACCAC 59.935 52.381 0.00 0.00 0.00 4.16
5418 6326 3.058501 GGAACACCAAACAACCACTATCG 60.059 47.826 0.00 0.00 0.00 2.92
5427 6335 1.876799 CAACCACTATCGGCAAACACA 59.123 47.619 0.00 0.00 0.00 3.72
5437 6345 8.018520 CACTATCGGCAAACACAATAAAAGTTA 58.981 33.333 0.00 0.00 0.00 2.24
5444 6352 7.540745 GGCAAACACAATAAAAGTTACATCGAT 59.459 33.333 0.00 0.00 0.00 3.59
5463 6371 1.188871 TGTATCTGGACCACCGCACA 61.189 55.000 0.00 0.00 39.42 4.57
5465 6373 0.908910 TATCTGGACCACCGCACAAT 59.091 50.000 0.00 0.00 39.42 2.71
5466 6374 0.677731 ATCTGGACCACCGCACAATG 60.678 55.000 0.00 0.00 39.42 2.82
5475 6383 0.685097 ACCGCACAATGACTACCACT 59.315 50.000 0.00 0.00 0.00 4.00
5478 6386 0.804989 GCACAATGACTACCACTGCC 59.195 55.000 0.00 0.00 0.00 4.85
5480 6388 2.715046 CACAATGACTACCACTGCCAT 58.285 47.619 0.00 0.00 0.00 4.40
5504 6412 2.089121 CGTCGTCGTCATTGAACTCTTG 59.911 50.000 0.00 0.00 0.00 3.02
5509 6417 4.385748 CGTCGTCATTGAACTCTTGAATCA 59.614 41.667 0.00 0.00 0.00 2.57
5512 6420 7.301054 GTCGTCATTGAACTCTTGAATCAATT 58.699 34.615 0.00 0.00 40.75 2.32
5514 6422 7.804600 TCGTCATTGAACTCTTGAATCAATTTG 59.195 33.333 0.00 0.00 40.75 2.32
5535 6443 4.454678 TGAAATGCCTGACACCATATCTC 58.545 43.478 0.00 0.00 0.00 2.75
5590 6498 2.026542 TCGTAGCTCTAAGGAGACCACA 60.027 50.000 0.00 0.00 41.86 4.17
5600 6508 2.379972 AGGAGACCACAGGAATCTACG 58.620 52.381 0.00 0.00 0.00 3.51
5603 6511 0.527817 GACCACAGGAATCTACGCCG 60.528 60.000 0.00 0.00 0.00 6.46
5605 6513 0.249073 CCACAGGAATCTACGCCGAG 60.249 60.000 0.00 0.00 0.00 4.63
5606 6514 0.249073 CACAGGAATCTACGCCGAGG 60.249 60.000 0.00 0.00 0.00 4.63
5610 6518 1.457009 GGAATCTACGCCGAGGCTCT 61.457 60.000 13.50 0.00 39.32 4.09
5619 6527 4.467232 CGAGGCTCTGTCAACTCG 57.533 61.111 13.50 0.00 45.34 4.18
5635 6543 5.296035 GTCAACTCGGGAAAGAAGAGAAAAA 59.704 40.000 0.00 0.00 36.03 1.94
5641 6549 6.062095 TCGGGAAAGAAGAGAAAAATGTTCT 58.938 36.000 0.00 0.00 34.50 3.01
5654 6562 2.505557 GTTCTACCGCCGACCACG 60.506 66.667 0.00 0.00 39.43 4.94
5674 6582 2.746904 CGAAGATGTTGGCCACACAATA 59.253 45.455 19.94 0.00 38.61 1.90
5675 6583 3.190327 CGAAGATGTTGGCCACACAATAA 59.810 43.478 19.94 0.00 38.61 1.40
5676 6584 4.320861 CGAAGATGTTGGCCACACAATAAA 60.321 41.667 19.94 0.00 38.61 1.40
5677 6585 4.789012 AGATGTTGGCCACACAATAAAG 57.211 40.909 19.94 0.00 38.61 1.85
5678 6586 3.511146 AGATGTTGGCCACACAATAAAGG 59.489 43.478 19.94 0.00 38.61 3.11
5679 6587 1.967066 TGTTGGCCACACAATAAAGGG 59.033 47.619 3.88 0.00 32.24 3.95
5680 6588 1.967779 GTTGGCCACACAATAAAGGGT 59.032 47.619 3.88 0.00 32.24 4.34
5681 6589 1.626686 TGGCCACACAATAAAGGGTG 58.373 50.000 0.00 0.00 40.78 4.61
5683 6591 1.967779 GGCCACACAATAAAGGGTGTT 59.032 47.619 0.00 0.00 45.39 3.32
5684 6592 2.367241 GGCCACACAATAAAGGGTGTTT 59.633 45.455 0.00 0.00 45.39 2.83
5685 6593 3.181459 GGCCACACAATAAAGGGTGTTTT 60.181 43.478 0.00 0.00 45.39 2.43
5686 6594 4.447290 GCCACACAATAAAGGGTGTTTTT 58.553 39.130 0.00 0.00 45.39 1.94
5687 6595 5.453480 GGCCACACAATAAAGGGTGTTTTTA 60.453 40.000 0.00 0.00 45.39 1.52
5688 6596 6.227522 GCCACACAATAAAGGGTGTTTTTAT 58.772 36.000 0.00 0.00 45.39 1.40
5689 6597 6.708502 GCCACACAATAAAGGGTGTTTTTATT 59.291 34.615 0.00 0.00 45.39 1.40
5713 6621 7.797121 TGACTCATAATATAGCATCAAGGGA 57.203 36.000 0.00 0.00 0.00 4.20
5714 6622 8.384693 TGACTCATAATATAGCATCAAGGGAT 57.615 34.615 0.00 0.00 0.00 3.85
5715 6623 9.492730 TGACTCATAATATAGCATCAAGGGATA 57.507 33.333 0.00 0.00 30.87 2.59
5723 6631 9.979897 AATATAGCATCAAGGGATAATTAGCAA 57.020 29.630 2.72 0.00 30.87 3.91
5724 6632 7.693969 ATAGCATCAAGGGATAATTAGCAAC 57.306 36.000 2.72 0.00 30.87 4.17
5725 6633 5.448654 AGCATCAAGGGATAATTAGCAACA 58.551 37.500 2.72 0.00 30.87 3.33
5726 6634 5.300286 AGCATCAAGGGATAATTAGCAACAC 59.700 40.000 2.72 0.00 30.87 3.32
5727 6635 5.507985 GCATCAAGGGATAATTAGCAACACC 60.508 44.000 2.72 0.00 30.87 4.16
5728 6636 4.532834 TCAAGGGATAATTAGCAACACCC 58.467 43.478 2.72 0.00 36.47 4.61
5729 6637 4.017958 TCAAGGGATAATTAGCAACACCCA 60.018 41.667 2.72 0.00 38.42 4.51
5730 6638 4.170468 AGGGATAATTAGCAACACCCAG 57.830 45.455 2.72 0.00 38.42 4.45
5731 6639 2.623416 GGGATAATTAGCAACACCCAGC 59.377 50.000 2.72 0.00 36.27 4.85
5732 6640 2.623416 GGATAATTAGCAACACCCAGCC 59.377 50.000 2.72 0.00 0.00 4.85
5733 6641 2.137810 TAATTAGCAACACCCAGCCC 57.862 50.000 0.00 0.00 0.00 5.19
5734 6642 0.614697 AATTAGCAACACCCAGCCCC 60.615 55.000 0.00 0.00 0.00 5.80
5735 6643 1.509548 ATTAGCAACACCCAGCCCCT 61.510 55.000 0.00 0.00 0.00 4.79
5736 6644 2.424842 TTAGCAACACCCAGCCCCTG 62.425 60.000 0.00 0.00 0.00 4.45
5738 6646 4.601794 CAACACCCAGCCCCTGCA 62.602 66.667 0.00 0.00 41.13 4.41
5739 6647 3.593680 AACACCCAGCCCCTGCAT 61.594 61.111 0.00 0.00 41.13 3.96
5740 6648 2.237965 AACACCCAGCCCCTGCATA 61.238 57.895 0.00 0.00 41.13 3.14
5741 6649 2.194056 CACCCAGCCCCTGCATAG 59.806 66.667 0.00 0.00 41.13 2.23
5742 6650 2.286425 ACCCAGCCCCTGCATAGT 60.286 61.111 0.00 0.00 41.13 2.12
5743 6651 2.378634 ACCCAGCCCCTGCATAGTC 61.379 63.158 0.00 0.00 41.13 2.59
5744 6652 2.074948 CCCAGCCCCTGCATAGTCT 61.075 63.158 0.00 0.00 41.13 3.24
5745 6653 1.147824 CCAGCCCCTGCATAGTCTG 59.852 63.158 0.00 0.00 41.13 3.51
5746 6654 1.340399 CCAGCCCCTGCATAGTCTGA 61.340 60.000 7.48 0.00 41.13 3.27
5747 6655 0.543277 CAGCCCCTGCATAGTCTGAA 59.457 55.000 0.00 0.00 41.13 3.02
5748 6656 1.142465 CAGCCCCTGCATAGTCTGAAT 59.858 52.381 0.00 0.00 41.13 2.57
5749 6657 1.142465 AGCCCCTGCATAGTCTGAATG 59.858 52.381 0.00 0.00 41.13 2.67
5759 6667 5.361135 CATAGTCTGAATGCACACAAACA 57.639 39.130 0.00 0.00 0.00 2.83
5760 6668 5.761003 CATAGTCTGAATGCACACAAACAA 58.239 37.500 0.00 0.00 0.00 2.83
5761 6669 4.032703 AGTCTGAATGCACACAAACAAC 57.967 40.909 0.00 0.00 0.00 3.32
5762 6670 3.443329 AGTCTGAATGCACACAAACAACA 59.557 39.130 0.00 0.00 0.00 3.33
5763 6671 3.547468 GTCTGAATGCACACAAACAACAC 59.453 43.478 0.00 0.00 0.00 3.32
5764 6672 3.192212 TCTGAATGCACACAAACAACACA 59.808 39.130 0.00 0.00 0.00 3.72
5765 6673 3.917988 TGAATGCACACAAACAACACAA 58.082 36.364 0.00 0.00 0.00 3.33
5766 6674 3.925299 TGAATGCACACAAACAACACAAG 59.075 39.130 0.00 0.00 0.00 3.16
5767 6675 1.707632 TGCACACAAACAACACAAGC 58.292 45.000 0.00 0.00 0.00 4.01
5768 6676 1.000171 TGCACACAAACAACACAAGCA 60.000 42.857 0.00 0.00 0.00 3.91
5769 6677 2.270047 GCACACAAACAACACAAGCAT 58.730 42.857 0.00 0.00 0.00 3.79
5770 6678 3.119352 TGCACACAAACAACACAAGCATA 60.119 39.130 0.00 0.00 0.00 3.14
5771 6679 3.242712 GCACACAAACAACACAAGCATAC 59.757 43.478 0.00 0.00 0.00 2.39
5772 6680 4.419280 CACACAAACAACACAAGCATACA 58.581 39.130 0.00 0.00 0.00 2.29
5773 6681 4.265085 CACACAAACAACACAAGCATACAC 59.735 41.667 0.00 0.00 0.00 2.90
5774 6682 4.082517 ACACAAACAACACAAGCATACACA 60.083 37.500 0.00 0.00 0.00 3.72
5775 6683 4.265085 CACAAACAACACAAGCATACACAC 59.735 41.667 0.00 0.00 0.00 3.82
5776 6684 4.082517 ACAAACAACACAAGCATACACACA 60.083 37.500 0.00 0.00 0.00 3.72
5777 6685 3.691049 ACAACACAAGCATACACACAC 57.309 42.857 0.00 0.00 0.00 3.82
5778 6686 3.013219 ACAACACAAGCATACACACACA 58.987 40.909 0.00 0.00 0.00 3.72
5779 6687 3.181501 ACAACACAAGCATACACACACAC 60.182 43.478 0.00 0.00 0.00 3.82
5780 6688 2.637947 ACACAAGCATACACACACACA 58.362 42.857 0.00 0.00 0.00 3.72
5781 6689 2.354510 ACACAAGCATACACACACACAC 59.645 45.455 0.00 0.00 0.00 3.82
5782 6690 2.354199 CACAAGCATACACACACACACA 59.646 45.455 0.00 0.00 0.00 3.72
5783 6691 2.354510 ACAAGCATACACACACACACAC 59.645 45.455 0.00 0.00 0.00 3.82
5784 6692 2.323968 AGCATACACACACACACACA 57.676 45.000 0.00 0.00 0.00 3.72
5785 6693 1.939934 AGCATACACACACACACACAC 59.060 47.619 0.00 0.00 0.00 3.82
5786 6694 1.668237 GCATACACACACACACACACA 59.332 47.619 0.00 0.00 0.00 3.72
5787 6695 2.538737 GCATACACACACACACACACAC 60.539 50.000 0.00 0.00 0.00 3.82
5788 6696 2.457366 TACACACACACACACACACA 57.543 45.000 0.00 0.00 0.00 3.72
5789 6697 1.819928 ACACACACACACACACACAT 58.180 45.000 0.00 0.00 0.00 3.21
5790 6698 2.979240 ACACACACACACACACACATA 58.021 42.857 0.00 0.00 0.00 2.29
5791 6699 2.675844 ACACACACACACACACACATAC 59.324 45.455 0.00 0.00 0.00 2.39
5792 6700 2.675348 CACACACACACACACACATACA 59.325 45.455 0.00 0.00 0.00 2.29
5793 6701 3.126000 CACACACACACACACACATACAA 59.874 43.478 0.00 0.00 0.00 2.41
5794 6702 3.753797 ACACACACACACACACATACAAA 59.246 39.130 0.00 0.00 0.00 2.83
5795 6703 4.094911 CACACACACACACACATACAAAC 58.905 43.478 0.00 0.00 0.00 2.93
5796 6704 3.753797 ACACACACACACACATACAAACA 59.246 39.130 0.00 0.00 0.00 2.83
5797 6705 4.142708 ACACACACACACACATACAAACAG 60.143 41.667 0.00 0.00 0.00 3.16
5798 6706 3.181501 ACACACACACACATACAAACAGC 60.182 43.478 0.00 0.00 0.00 4.40
5799 6707 2.357637 ACACACACACATACAAACAGCC 59.642 45.455 0.00 0.00 0.00 4.85
5800 6708 2.618241 CACACACACATACAAACAGCCT 59.382 45.455 0.00 0.00 0.00 4.58
5801 6709 2.878406 ACACACACATACAAACAGCCTC 59.122 45.455 0.00 0.00 0.00 4.70
5802 6710 2.877786 CACACACATACAAACAGCCTCA 59.122 45.455 0.00 0.00 0.00 3.86
5803 6711 2.878406 ACACACATACAAACAGCCTCAC 59.122 45.455 0.00 0.00 0.00 3.51
5804 6712 2.226437 CACACATACAAACAGCCTCACC 59.774 50.000 0.00 0.00 0.00 4.02
5805 6713 2.158682 ACACATACAAACAGCCTCACCA 60.159 45.455 0.00 0.00 0.00 4.17
5806 6714 2.485426 CACATACAAACAGCCTCACCAG 59.515 50.000 0.00 0.00 0.00 4.00
5807 6715 1.470098 CATACAAACAGCCTCACCAGC 59.530 52.381 0.00 0.00 0.00 4.85
5808 6716 0.472044 TACAAACAGCCTCACCAGCA 59.528 50.000 0.00 0.00 0.00 4.41
5809 6717 0.395586 ACAAACAGCCTCACCAGCAA 60.396 50.000 0.00 0.00 0.00 3.91
5810 6718 0.746063 CAAACAGCCTCACCAGCAAA 59.254 50.000 0.00 0.00 0.00 3.68
5811 6719 1.035139 AAACAGCCTCACCAGCAAAG 58.965 50.000 0.00 0.00 0.00 2.77
5812 6720 0.183492 AACAGCCTCACCAGCAAAGA 59.817 50.000 0.00 0.00 0.00 2.52
5813 6721 0.250640 ACAGCCTCACCAGCAAAGAG 60.251 55.000 0.00 0.00 0.00 2.85
5814 6722 1.303155 AGCCTCACCAGCAAAGAGC 60.303 57.895 0.00 0.00 46.19 4.09
5828 6736 4.759782 GCAAAGAGCCAAGTCATACTAGA 58.240 43.478 0.00 0.00 37.23 2.43
5829 6737 4.568760 GCAAAGAGCCAAGTCATACTAGAC 59.431 45.833 0.00 0.00 36.61 2.59
5830 6738 5.112686 CAAAGAGCCAAGTCATACTAGACC 58.887 45.833 0.00 0.00 39.34 3.85
5831 6739 3.982516 AGAGCCAAGTCATACTAGACCA 58.017 45.455 0.00 0.00 39.34 4.02
5832 6740 4.353777 AGAGCCAAGTCATACTAGACCAA 58.646 43.478 0.00 0.00 39.34 3.67
5833 6741 4.777896 AGAGCCAAGTCATACTAGACCAAA 59.222 41.667 0.00 0.00 39.34 3.28
5834 6742 5.248477 AGAGCCAAGTCATACTAGACCAAAA 59.752 40.000 0.00 0.00 39.34 2.44
5835 6743 5.246307 AGCCAAGTCATACTAGACCAAAAC 58.754 41.667 0.00 0.00 39.34 2.43
5836 6744 5.013183 AGCCAAGTCATACTAGACCAAAACT 59.987 40.000 0.00 0.00 39.34 2.66
5837 6745 6.212791 AGCCAAGTCATACTAGACCAAAACTA 59.787 38.462 0.00 0.00 39.34 2.24
5838 6746 7.048512 GCCAAGTCATACTAGACCAAAACTAT 58.951 38.462 0.00 0.00 39.34 2.12
5839 6747 7.011482 GCCAAGTCATACTAGACCAAAACTATG 59.989 40.741 0.00 0.00 39.34 2.23
5840 6748 7.011482 CCAAGTCATACTAGACCAAAACTATGC 59.989 40.741 0.00 0.00 39.34 3.14
5841 6749 6.583562 AGTCATACTAGACCAAAACTATGCC 58.416 40.000 0.00 0.00 39.34 4.40
5842 6750 6.384305 AGTCATACTAGACCAAAACTATGCCT 59.616 38.462 0.00 0.00 39.34 4.75
5843 6751 7.563924 AGTCATACTAGACCAAAACTATGCCTA 59.436 37.037 0.00 0.00 39.34 3.93
5844 6752 7.868415 GTCATACTAGACCAAAACTATGCCTAG 59.132 40.741 0.00 0.00 32.78 3.02
5845 6753 5.615925 ACTAGACCAAAACTATGCCTAGG 57.384 43.478 3.67 3.67 31.76 3.02
5846 6754 3.283259 AGACCAAAACTATGCCTAGGC 57.717 47.619 27.71 27.71 42.35 3.93
5847 6755 1.940613 GACCAAAACTATGCCTAGGCG 59.059 52.381 28.28 16.81 45.51 5.52
5848 6756 1.308998 CCAAAACTATGCCTAGGCGG 58.691 55.000 28.28 21.57 45.51 6.13
5849 6757 1.134220 CCAAAACTATGCCTAGGCGGA 60.134 52.381 28.28 17.40 45.51 5.54
5850 6758 2.213499 CAAAACTATGCCTAGGCGGAG 58.787 52.381 28.28 26.83 45.51 4.63
5851 6759 1.789523 AAACTATGCCTAGGCGGAGA 58.210 50.000 31.30 16.37 45.51 3.71
5852 6760 1.333177 AACTATGCCTAGGCGGAGAG 58.667 55.000 31.30 24.50 45.51 3.20
5853 6761 0.478942 ACTATGCCTAGGCGGAGAGA 59.521 55.000 31.30 15.34 45.51 3.10
5854 6762 1.133450 ACTATGCCTAGGCGGAGAGAA 60.133 52.381 31.30 14.67 45.51 2.87
5855 6763 1.964223 CTATGCCTAGGCGGAGAGAAA 59.036 52.381 28.28 9.01 45.51 2.52
5856 6764 1.204146 ATGCCTAGGCGGAGAGAAAA 58.796 50.000 28.28 8.23 45.51 2.29
5857 6765 0.981183 TGCCTAGGCGGAGAGAAAAA 59.019 50.000 28.28 4.00 45.51 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.051581 AGATGCATTATGGGACCAGAGT 58.948 45.455 0.00 0.00 0.00 3.24
2 3 3.784511 AGATGCATTATGGGACCAGAG 57.215 47.619 0.00 0.00 0.00 3.35
3 4 3.973305 TGTAGATGCATTATGGGACCAGA 59.027 43.478 0.00 0.00 0.00 3.86
4 5 4.356405 TGTAGATGCATTATGGGACCAG 57.644 45.455 0.00 0.00 0.00 4.00
6 7 4.655963 ACATGTAGATGCATTATGGGACC 58.344 43.478 0.00 0.00 32.14 4.46
7 8 6.881065 ACATACATGTAGATGCATTATGGGAC 59.119 38.462 11.91 3.17 39.68 4.46
8 9 6.880529 CACATACATGTAGATGCATTATGGGA 59.119 38.462 11.91 5.80 39.39 4.37
9 10 6.403964 GCACATACATGTAGATGCATTATGGG 60.404 42.308 27.24 15.15 39.39 4.00
11 12 7.333672 AGAGCACATACATGTAGATGCATTATG 59.666 37.037 30.78 17.70 39.39 1.90
12 13 7.392418 AGAGCACATACATGTAGATGCATTAT 58.608 34.615 30.78 18.55 39.39 1.28
13 14 6.762333 AGAGCACATACATGTAGATGCATTA 58.238 36.000 30.78 4.60 39.39 1.90
14 15 5.618236 AGAGCACATACATGTAGATGCATT 58.382 37.500 30.78 21.15 39.39 3.56
15 16 5.224821 AGAGCACATACATGTAGATGCAT 57.775 39.130 30.78 21.71 39.39 3.96
16 17 4.677673 AGAGCACATACATGTAGATGCA 57.322 40.909 30.78 6.56 39.39 3.96
17 18 6.219473 AGTTAGAGCACATACATGTAGATGC 58.781 40.000 25.87 25.87 39.39 3.91
18 19 7.594386 CAGAGTTAGAGCACATACATGTAGATG 59.406 40.741 11.91 12.35 39.39 2.90
19 20 7.255766 CCAGAGTTAGAGCACATACATGTAGAT 60.256 40.741 11.91 0.00 39.39 1.98
20 21 6.039829 CCAGAGTTAGAGCACATACATGTAGA 59.960 42.308 11.91 0.00 39.39 2.59
21 22 6.183360 ACCAGAGTTAGAGCACATACATGTAG 60.183 42.308 11.91 6.29 39.39 2.74
22 23 5.656859 ACCAGAGTTAGAGCACATACATGTA 59.343 40.000 8.27 8.27 39.39 2.29
55 56 4.339530 AGAGCACGTACATGTGATAGATGT 59.660 41.667 9.11 0.00 42.55 3.06
89 90 3.604875 AAATGAAGTGTACGACCGGAT 57.395 42.857 9.46 0.00 0.00 4.18
138 147 0.320421 TGGCCTGAGTTTAGTGCGTC 60.320 55.000 3.32 0.00 0.00 5.19
141 150 1.604604 TTGTGGCCTGAGTTTAGTGC 58.395 50.000 3.32 0.00 0.00 4.40
152 161 3.634504 TGCTAATGAATGATTGTGGCCT 58.365 40.909 3.32 0.00 0.00 5.19
203 220 4.862641 ATAGGGCATCCAGTGTTAGTTT 57.137 40.909 0.00 0.00 34.83 2.66
227 244 7.673641 AGATGACTCTGATCTTTTATGAGGT 57.326 36.000 0.00 0.00 0.00 3.85
256 273 6.428159 GCATATCGATCCAGGTATTGTTCTTT 59.572 38.462 0.00 0.00 0.00 2.52
268 285 9.469807 GTTATCTATTAAGGCATATCGATCCAG 57.530 37.037 0.00 0.00 0.00 3.86
301 318 4.888038 AAACCAAACACGGTAAGTTCTC 57.112 40.909 0.00 0.00 38.76 2.87
351 368 5.561993 GTGCTTACACAAACACGAGTTAAA 58.438 37.500 0.00 0.00 46.61 1.52
374 394 1.002087 ACCCGTTAAGTGAGAAGCTGG 59.998 52.381 0.00 0.00 0.00 4.85
459 480 8.585018 GGGTGCCAGTTATAAATATAGCAATTT 58.415 33.333 6.16 0.00 33.69 1.82
468 489 3.118186 AGTGCGGGTGCCAGTTATAAATA 60.118 43.478 0.00 0.00 41.78 1.40
535 556 2.697751 GACTCCTGTCCTCTGCATGTAT 59.302 50.000 0.00 0.00 37.24 2.29
584 613 9.708222 GCACAATGAATTTACTAGTTACAGATG 57.292 33.333 0.00 2.20 0.00 2.90
597 626 6.313411 GCTGCATTAAAGGCACAATGAATTTA 59.687 34.615 9.15 0.00 36.11 1.40
651 1409 0.599204 CGACGCCGCACCCTAATATT 60.599 55.000 0.00 0.00 0.00 1.28
673 1431 2.296920 AGGCGGACAAATGGCTCTA 58.703 52.632 0.00 0.00 35.99 2.43
751 1509 7.963532 AGGTTCATAGAAACTGTTTCTCTACA 58.036 34.615 32.38 19.24 46.62 2.74
752 1510 8.834749 AAGGTTCATAGAAACTGTTTCTCTAC 57.165 34.615 32.38 24.17 46.62 2.59
754 1512 7.740805 AGAAGGTTCATAGAAACTGTTTCTCT 58.259 34.615 32.38 22.91 46.62 3.10
755 1513 7.971183 AGAAGGTTCATAGAAACTGTTTCTC 57.029 36.000 32.38 20.21 46.62 2.87
775 1533 7.391833 AGGGAGTAGTTTTTATTGCTCAAGAAG 59.608 37.037 0.00 0.00 0.00 2.85
778 1536 6.094186 GGAGGGAGTAGTTTTTATTGCTCAAG 59.906 42.308 0.00 0.00 0.00 3.02
796 1554 4.347000 TCTTTTATTATGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
798 1556 4.699925 TCTTTTATTATGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
799 1557 4.510340 CGTTCTTTTATTATGGGACGGAGG 59.490 45.833 0.00 0.00 0.00 4.30
803 1561 7.804129 TCAAAAACGTTCTTTTATTATGGGACG 59.196 33.333 0.00 0.00 0.00 4.79
815 1573 6.311200 ACGTACTAGTGTCAAAAACGTTCTTT 59.689 34.615 11.00 1.95 38.81 2.52
820 1578 4.864247 ACAACGTACTAGTGTCAAAAACGT 59.136 37.500 11.00 11.00 43.19 3.99
936 1694 1.670730 GCCATTTTGGTTTGCCCGG 60.671 57.895 0.00 0.00 40.46 5.73
944 1702 0.251787 GGAGAGGTGGCCATTTTGGT 60.252 55.000 9.72 0.00 40.46 3.67
989 1747 2.121538 GCCTTCATTTCCGGGGAGC 61.122 63.158 0.00 0.00 0.00 4.70
1003 1761 1.480954 CGTGAGTATAGTGGTGGCCTT 59.519 52.381 3.32 0.00 0.00 4.35
1016 1774 0.743701 GGACGAGGAGAGCGTGAGTA 60.744 60.000 0.00 0.00 42.77 2.59
1098 1856 2.125793 GAAGTGCGGACGGGGTAC 60.126 66.667 0.00 0.00 0.00 3.34
1611 2370 2.073220 CGACACGAACCGTCTGACG 61.073 63.158 22.49 22.49 38.32 4.35
1680 2439 3.710209 ACCTTGACTAATTGCTGCTCT 57.290 42.857 0.00 0.00 0.00 4.09
1794 2554 0.655733 AATTCCTTAACGGCATCGCG 59.344 50.000 0.00 0.00 40.63 5.87
1811 2571 3.687698 CGAACTCCGGTGGTTCATTTAAT 59.312 43.478 28.12 5.62 41.99 1.40
2252 3030 4.859304 ATCGTGTATTGACGCCCTATTA 57.141 40.909 0.00 0.00 39.27 0.98
2253 3031 3.746045 ATCGTGTATTGACGCCCTATT 57.254 42.857 0.00 0.00 39.27 1.73
2254 3032 4.553323 GTTATCGTGTATTGACGCCCTAT 58.447 43.478 0.00 0.00 39.27 2.57
2424 3210 1.586422 AGTGTTGCAGCTGTACACAG 58.414 50.000 34.75 4.96 43.46 3.66
2466 3256 2.488937 AGTTTCGAAACAACCCAAACGT 59.511 40.909 35.29 13.71 41.30 3.99
2590 3387 1.529713 TTTGGCCGTGGTTCCTTCC 60.530 57.895 0.00 0.00 0.00 3.46
2600 3397 0.827507 ATTTCTGCAGGTTTGGCCGT 60.828 50.000 15.13 0.00 43.70 5.68
2915 3713 8.974060 ACACTGGAATAGTAACAAGAAGAAAA 57.026 30.769 0.00 0.00 37.60 2.29
2922 3720 7.905604 TGAATGACACTGGAATAGTAACAAG 57.094 36.000 0.00 0.00 37.60 3.16
3076 3874 4.400884 TGCTTTGAAGGAAAGTGCACTTTA 59.599 37.500 37.69 22.97 45.37 1.85
3078 3876 2.760092 TGCTTTGAAGGAAAGTGCACTT 59.240 40.909 26.36 26.36 42.85 3.16
3079 3877 2.378038 TGCTTTGAAGGAAAGTGCACT 58.622 42.857 15.25 15.25 42.85 4.40
3080 3878 2.869233 TGCTTTGAAGGAAAGTGCAC 57.131 45.000 9.40 9.40 42.85 4.57
3081 3879 3.005050 CAGATGCTTTGAAGGAAAGTGCA 59.995 43.478 0.00 0.00 42.85 4.57
3082 3880 3.572584 CAGATGCTTTGAAGGAAAGTGC 58.427 45.455 0.00 0.00 42.85 4.40
3083 3881 3.613432 GCCAGATGCTTTGAAGGAAAGTG 60.613 47.826 0.00 0.00 42.85 3.16
3084 3882 2.560105 GCCAGATGCTTTGAAGGAAAGT 59.440 45.455 0.00 0.00 42.85 2.66
3085 3883 3.227810 GCCAGATGCTTTGAAGGAAAG 57.772 47.619 0.00 0.00 43.63 2.62
3096 3894 6.501752 AAAGTGCTCTTTAAAGCCAGATGCT 61.502 40.000 11.90 1.67 46.29 3.79
3097 3895 2.751806 AGTGCTCTTTAAAGCCAGATGC 59.248 45.455 10.51 7.91 41.77 3.91
3098 3896 5.048504 TGAAAGTGCTCTTTAAAGCCAGATG 60.049 40.000 13.43 0.00 42.99 2.90
3099 3897 5.072741 TGAAAGTGCTCTTTAAAGCCAGAT 58.927 37.500 13.43 0.24 42.99 2.90
3100 3898 4.460263 TGAAAGTGCTCTTTAAAGCCAGA 58.540 39.130 13.43 0.00 42.99 3.86
3101 3899 4.836125 TGAAAGTGCTCTTTAAAGCCAG 57.164 40.909 13.43 5.05 42.99 4.85
3102 3900 4.644685 AGTTGAAAGTGCTCTTTAAAGCCA 59.355 37.500 13.43 7.24 42.99 4.75
3103 3901 5.009110 AGAGTTGAAAGTGCTCTTTAAAGCC 59.991 40.000 13.43 7.52 42.99 4.35
3104 3902 6.066054 AGAGTTGAAAGTGCTCTTTAAAGC 57.934 37.500 13.43 8.01 42.99 3.51
3105 3903 9.604626 CATTAGAGTTGAAAGTGCTCTTTAAAG 57.395 33.333 13.43 9.04 42.99 1.85
3106 3904 8.076178 GCATTAGAGTTGAAAGTGCTCTTTAAA 58.924 33.333 13.43 10.03 42.99 1.52
3107 3905 7.445402 AGCATTAGAGTTGAAAGTGCTCTTTAA 59.555 33.333 13.43 3.97 42.99 1.52
3176 4006 6.016360 TGTTACAACTCTAATGCTGCACAAAT 60.016 34.615 3.57 0.00 0.00 2.32
3406 4237 4.576053 TGATCCGCTCCAAATATCAACTTG 59.424 41.667 0.00 0.00 0.00 3.16
3428 4259 6.425114 GCTCGGGCCAATATATATAGACAATG 59.575 42.308 4.39 0.00 0.00 2.82
3446 4277 0.678048 AAGGAATTCACAGCTCGGGC 60.678 55.000 0.00 0.00 39.06 6.13
3588 4470 9.326489 AGGCAGTCTGGTGATAAAATATAGATA 57.674 33.333 1.14 0.00 0.00 1.98
3589 4471 8.212259 AGGCAGTCTGGTGATAAAATATAGAT 57.788 34.615 1.14 0.00 0.00 1.98
3590 4472 7.618019 AGGCAGTCTGGTGATAAAATATAGA 57.382 36.000 1.14 0.00 0.00 1.98
3591 4473 9.950496 AATAGGCAGTCTGGTGATAAAATATAG 57.050 33.333 1.14 0.00 0.00 1.31
3593 4475 9.071276 CAAATAGGCAGTCTGGTGATAAAATAT 57.929 33.333 1.14 0.00 0.00 1.28
3594 4476 7.013274 GCAAATAGGCAGTCTGGTGATAAAATA 59.987 37.037 1.14 0.00 0.00 1.40
3595 4477 6.183360 GCAAATAGGCAGTCTGGTGATAAAAT 60.183 38.462 1.14 0.00 0.00 1.82
3596 4478 5.125417 GCAAATAGGCAGTCTGGTGATAAAA 59.875 40.000 1.14 0.00 0.00 1.52
3597 4479 4.640201 GCAAATAGGCAGTCTGGTGATAAA 59.360 41.667 1.14 0.00 0.00 1.40
3598 4480 4.199310 GCAAATAGGCAGTCTGGTGATAA 58.801 43.478 1.14 0.00 0.00 1.75
3599 4481 3.199727 TGCAAATAGGCAGTCTGGTGATA 59.800 43.478 1.14 0.00 39.25 2.15
3600 4482 2.025981 TGCAAATAGGCAGTCTGGTGAT 60.026 45.455 1.14 0.00 39.25 3.06
3634 4516 7.852971 TGTATTACTAAGGTTTTCGGATTGG 57.147 36.000 0.00 0.00 0.00 3.16
3658 4540 7.701539 TTTTTATCATACTTGCACCTCACAT 57.298 32.000 0.00 0.00 0.00 3.21
3683 4565 3.168292 CCAGCAGAAGAAAGGGGATTTT 58.832 45.455 0.00 0.00 0.00 1.82
3684 4566 2.110721 ACCAGCAGAAGAAAGGGGATTT 59.889 45.455 0.00 0.00 0.00 2.17
3685 4567 1.713078 ACCAGCAGAAGAAAGGGGATT 59.287 47.619 0.00 0.00 0.00 3.01
3686 4568 1.376649 ACCAGCAGAAGAAAGGGGAT 58.623 50.000 0.00 0.00 0.00 3.85
3688 4570 4.141390 ACATATACCAGCAGAAGAAAGGGG 60.141 45.833 0.00 0.00 0.00 4.79
3715 4599 6.014156 AGGATTAAGTGATAGGTAGTGATGGC 60.014 42.308 0.00 0.00 0.00 4.40
3769 4653 1.984288 GCTCCCCTCGCCCTACAAAT 61.984 60.000 0.00 0.00 0.00 2.32
3784 4668 0.462759 CAAGGTCCTCCATTCGCTCC 60.463 60.000 0.00 0.00 35.89 4.70
3962 4846 2.633481 GGTATCCTCTTGGCGAACCTAT 59.367 50.000 0.00 0.00 36.63 2.57
4433 5317 3.640029 ACCGAACCTCTTGTTCTGTCTTA 59.360 43.478 3.84 0.00 44.95 2.10
4514 5398 1.842562 AGTGCCTGATTAGCTCCATGT 59.157 47.619 0.00 0.00 0.00 3.21
4550 5434 1.669115 CGACCAGTTGGCTCACCTG 60.669 63.158 0.00 0.00 39.32 4.00
4693 5577 1.002888 CTCATTCACACTGCCAGAGGT 59.997 52.381 0.00 0.00 0.00 3.85
4926 5830 1.815421 CATGCAGCAGGACCCGTAC 60.815 63.158 0.00 0.00 0.00 3.67
4978 5882 8.896320 AAACACATTTCCCATTAACCTTAAAC 57.104 30.769 0.00 0.00 0.00 2.01
4983 5887 6.210584 CCACTAAACACATTTCCCATTAACCT 59.789 38.462 0.00 0.00 0.00 3.50
5142 6050 2.943034 GTCATCGTCGCCGTCGTC 60.943 66.667 3.41 0.00 36.96 4.20
5146 6054 1.300311 TTGTTGTCATCGTCGCCGT 60.300 52.632 0.00 0.00 35.01 5.68
5148 6056 0.584396 TTGTTGTTGTCATCGTCGCC 59.416 50.000 0.00 0.00 0.00 5.54
5149 6057 2.096466 TCATTGTTGTTGTCATCGTCGC 60.096 45.455 0.00 0.00 0.00 5.19
5151 6059 4.466567 TGTCATTGTTGTTGTCATCGTC 57.533 40.909 0.00 0.00 0.00 4.20
5152 6060 4.891627 TTGTCATTGTTGTTGTCATCGT 57.108 36.364 0.00 0.00 0.00 3.73
5153 6061 4.146961 GCTTTGTCATTGTTGTTGTCATCG 59.853 41.667 0.00 0.00 0.00 3.84
5154 6062 5.284079 AGCTTTGTCATTGTTGTTGTCATC 58.716 37.500 0.00 0.00 0.00 2.92
5155 6063 5.266733 AGCTTTGTCATTGTTGTTGTCAT 57.733 34.783 0.00 0.00 0.00 3.06
5156 6064 4.717233 AGCTTTGTCATTGTTGTTGTCA 57.283 36.364 0.00 0.00 0.00 3.58
5168 6076 7.391148 AGTTTCAACTCTAAAAGCTTTGTCA 57.609 32.000 13.54 0.25 32.86 3.58
5183 6091 7.041984 GGTTTTGAGATCTTACGAGTTTCAACT 60.042 37.037 0.00 0.00 43.16 3.16
5216 6124 5.594926 AGGCTTTGTTGATTTTGAGAACTG 58.405 37.500 0.00 0.00 0.00 3.16
5218 6126 6.908870 AAAGGCTTTGTTGATTTTGAGAAC 57.091 33.333 12.53 0.00 0.00 3.01
5228 6136 4.142038 GGAAGGTCTAAAGGCTTTGTTGA 58.858 43.478 22.32 13.94 0.00 3.18
5266 6174 8.699749 GGATGAAATTTTATAATAGGTTTGCGC 58.300 33.333 0.00 0.00 0.00 6.09
5267 6175 9.743057 TGGATGAAATTTTATAATAGGTTTGCG 57.257 29.630 0.00 0.00 0.00 4.85
5292 6200 8.586570 TTGTATTTGGAATGCTTTGTACTTTG 57.413 30.769 0.00 0.00 0.00 2.77
5341 6249 2.240160 TGGTAGTGGTTGTTCAGTGGTT 59.760 45.455 0.00 0.00 0.00 3.67
5387 6295 0.395312 TTTGGTGTTCCGAGGACCTC 59.605 55.000 11.87 11.87 36.30 3.85
5394 6302 1.096416 GTGGTTGTTTGGTGTTCCGA 58.904 50.000 0.00 0.00 36.30 4.55
5395 6303 1.099689 AGTGGTTGTTTGGTGTTCCG 58.900 50.000 0.00 0.00 36.30 4.30
5404 6312 2.952978 TGTTTGCCGATAGTGGTTGTTT 59.047 40.909 0.00 0.00 0.00 2.83
5413 6321 8.018520 TGTAACTTTTATTGTGTTTGCCGATAG 58.981 33.333 0.00 0.00 0.00 2.08
5418 6326 6.858993 TCGATGTAACTTTTATTGTGTTTGCC 59.141 34.615 0.00 0.00 0.00 4.52
5437 6345 2.365617 GGTGGTCCAGATACATCGATGT 59.634 50.000 31.93 31.93 44.48 3.06
5444 6352 1.188871 TGTGCGGTGGTCCAGATACA 61.189 55.000 0.00 0.00 0.00 2.29
5449 6357 1.302431 TCATTGTGCGGTGGTCCAG 60.302 57.895 0.00 0.00 0.00 3.86
5450 6358 1.599518 GTCATTGTGCGGTGGTCCA 60.600 57.895 0.00 0.00 0.00 4.02
5463 6371 3.055385 ACGTTATGGCAGTGGTAGTCATT 60.055 43.478 0.00 0.00 0.00 2.57
5465 6373 1.897133 ACGTTATGGCAGTGGTAGTCA 59.103 47.619 0.00 0.00 0.00 3.41
5466 6374 2.537401 GACGTTATGGCAGTGGTAGTC 58.463 52.381 0.00 0.00 0.00 2.59
5504 6412 5.349543 GGTGTCAGGCATTTCAAATTGATTC 59.650 40.000 0.00 0.00 0.00 2.52
5509 6417 4.895668 ATGGTGTCAGGCATTTCAAATT 57.104 36.364 0.00 0.00 0.00 1.82
5512 6420 4.858850 AGATATGGTGTCAGGCATTTCAA 58.141 39.130 0.00 0.00 0.00 2.69
5514 6422 3.496130 CGAGATATGGTGTCAGGCATTTC 59.504 47.826 0.00 0.00 0.00 2.17
5517 6425 1.270518 GCGAGATATGGTGTCAGGCAT 60.271 52.381 0.00 0.00 0.00 4.40
5550 6458 2.263945 GAGGTTAGAGTTTCTCGCAGC 58.736 52.381 0.00 0.00 35.36 5.25
5552 6460 2.631418 CGAGGTTAGAGTTTCTCGCA 57.369 50.000 0.00 0.00 41.69 5.10
5560 6468 4.163839 TCCTTAGAGCTACGAGGTTAGAGT 59.836 45.833 8.19 0.00 0.00 3.24
5590 6498 3.130227 GCCTCGGCGTAGATTCCT 58.870 61.111 6.85 0.00 0.00 3.36
5600 6508 1.446966 GAGTTGACAGAGCCTCGGC 60.447 63.158 0.00 0.00 42.33 5.54
5603 6511 1.216710 CCCGAGTTGACAGAGCCTC 59.783 63.158 0.00 0.00 0.00 4.70
5605 6513 0.034896 TTTCCCGAGTTGACAGAGCC 59.965 55.000 0.00 0.00 0.00 4.70
5606 6514 1.000955 TCTTTCCCGAGTTGACAGAGC 59.999 52.381 0.00 0.00 0.00 4.09
5610 6518 2.963101 TCTCTTCTTTCCCGAGTTGACA 59.037 45.455 0.00 0.00 0.00 3.58
5619 6527 7.573283 CGGTAGAACATTTTTCTCTTCTTTCCC 60.573 40.741 0.00 0.00 0.00 3.97
5635 6543 1.217244 GTGGTCGGCGGTAGAACAT 59.783 57.895 7.21 0.00 37.67 2.71
5641 6549 2.048023 ATCTTCGTGGTCGGCGGTA 61.048 57.895 7.21 0.00 37.69 4.02
5654 6562 4.782019 TTATTGTGTGGCCAACATCTTC 57.218 40.909 7.24 0.00 41.97 2.87
5687 6595 8.829746 TCCCTTGATGCTATATTATGAGTCAAT 58.170 33.333 0.00 0.00 0.00 2.57
5688 6596 8.206126 TCCCTTGATGCTATATTATGAGTCAA 57.794 34.615 0.00 0.00 0.00 3.18
5689 6597 7.797121 TCCCTTGATGCTATATTATGAGTCA 57.203 36.000 0.00 0.00 0.00 3.41
5697 6605 9.979897 TTGCTAATTATCCCTTGATGCTATATT 57.020 29.630 0.00 0.00 32.18 1.28
5698 6606 9.401058 GTTGCTAATTATCCCTTGATGCTATAT 57.599 33.333 0.00 0.00 32.18 0.86
5699 6607 8.382405 TGTTGCTAATTATCCCTTGATGCTATA 58.618 33.333 0.00 0.00 32.18 1.31
5700 6608 7.175641 GTGTTGCTAATTATCCCTTGATGCTAT 59.824 37.037 0.00 0.00 32.18 2.97
5701 6609 6.486657 GTGTTGCTAATTATCCCTTGATGCTA 59.513 38.462 0.00 0.00 32.18 3.49
5702 6610 5.300286 GTGTTGCTAATTATCCCTTGATGCT 59.700 40.000 0.00 0.00 32.18 3.79
5703 6611 5.507985 GGTGTTGCTAATTATCCCTTGATGC 60.508 44.000 0.00 0.00 32.18 3.91
5704 6612 5.010012 GGGTGTTGCTAATTATCCCTTGATG 59.990 44.000 0.00 0.00 32.18 3.07
5705 6613 5.140454 GGGTGTTGCTAATTATCCCTTGAT 58.860 41.667 0.00 0.00 34.87 2.57
5706 6614 4.017958 TGGGTGTTGCTAATTATCCCTTGA 60.018 41.667 0.00 0.00 35.00 3.02
5707 6615 4.277476 TGGGTGTTGCTAATTATCCCTTG 58.723 43.478 0.00 0.00 35.00 3.61
5708 6616 4.536765 CTGGGTGTTGCTAATTATCCCTT 58.463 43.478 0.00 0.00 35.00 3.95
5709 6617 3.688414 GCTGGGTGTTGCTAATTATCCCT 60.688 47.826 0.00 0.00 35.00 4.20
5710 6618 2.623416 GCTGGGTGTTGCTAATTATCCC 59.377 50.000 0.00 0.00 0.00 3.85
5711 6619 2.623416 GGCTGGGTGTTGCTAATTATCC 59.377 50.000 0.00 0.00 0.00 2.59
5712 6620 2.623416 GGGCTGGGTGTTGCTAATTATC 59.377 50.000 0.00 0.00 0.00 1.75
5713 6621 2.666317 GGGCTGGGTGTTGCTAATTAT 58.334 47.619 0.00 0.00 0.00 1.28
5714 6622 1.341581 GGGGCTGGGTGTTGCTAATTA 60.342 52.381 0.00 0.00 0.00 1.40
5715 6623 0.614697 GGGGCTGGGTGTTGCTAATT 60.615 55.000 0.00 0.00 0.00 1.40
5716 6624 1.000359 GGGGCTGGGTGTTGCTAAT 60.000 57.895 0.00 0.00 0.00 1.73
5717 6625 2.160171 AGGGGCTGGGTGTTGCTAA 61.160 57.895 0.00 0.00 0.00 3.09
5718 6626 2.531685 AGGGGCTGGGTGTTGCTA 60.532 61.111 0.00 0.00 0.00 3.49
5719 6627 4.290622 CAGGGGCTGGGTGTTGCT 62.291 66.667 0.00 0.00 0.00 3.91
5721 6629 2.497792 TATGCAGGGGCTGGGTGTTG 62.498 60.000 0.00 0.00 41.91 3.33
5722 6630 2.215451 CTATGCAGGGGCTGGGTGTT 62.215 60.000 0.00 0.00 41.91 3.32
5723 6631 2.613696 TATGCAGGGGCTGGGTGT 60.614 61.111 0.00 0.00 41.91 4.16
5724 6632 2.194056 CTATGCAGGGGCTGGGTG 59.806 66.667 0.00 0.00 41.91 4.61
5725 6633 2.286425 ACTATGCAGGGGCTGGGT 60.286 61.111 0.00 0.00 41.91 4.51
5726 6634 2.074948 AGACTATGCAGGGGCTGGG 61.075 63.158 0.00 0.00 41.91 4.45
5727 6635 1.147824 CAGACTATGCAGGGGCTGG 59.852 63.158 14.60 0.00 41.91 4.85
5728 6636 0.543277 TTCAGACTATGCAGGGGCTG 59.457 55.000 15.86 15.86 41.91 4.85
5729 6637 1.142465 CATTCAGACTATGCAGGGGCT 59.858 52.381 0.00 0.00 41.91 5.19
5730 6638 1.602311 CATTCAGACTATGCAGGGGC 58.398 55.000 0.00 0.00 41.68 5.80
5731 6639 1.602311 GCATTCAGACTATGCAGGGG 58.398 55.000 5.49 0.00 45.93 4.79
5736 6644 4.161333 GTTTGTGTGCATTCAGACTATGC 58.839 43.478 3.61 3.61 46.63 3.14
5737 6645 5.361135 TGTTTGTGTGCATTCAGACTATG 57.639 39.130 12.97 0.00 37.38 2.23
5738 6646 5.299028 TGTTGTTTGTGTGCATTCAGACTAT 59.701 36.000 12.97 0.00 37.38 2.12
5739 6647 4.637977 TGTTGTTTGTGTGCATTCAGACTA 59.362 37.500 12.97 5.89 37.38 2.59
5740 6648 3.443329 TGTTGTTTGTGTGCATTCAGACT 59.557 39.130 12.97 0.00 37.38 3.24
5741 6649 3.547468 GTGTTGTTTGTGTGCATTCAGAC 59.453 43.478 0.00 0.00 37.04 3.51
5742 6650 3.192212 TGTGTTGTTTGTGTGCATTCAGA 59.808 39.130 0.00 0.00 0.00 3.27
5743 6651 3.509740 TGTGTTGTTTGTGTGCATTCAG 58.490 40.909 0.00 0.00 0.00 3.02
5744 6652 3.582714 TGTGTTGTTTGTGTGCATTCA 57.417 38.095 0.00 0.00 0.00 2.57
5745 6653 3.242059 GCTTGTGTTGTTTGTGTGCATTC 60.242 43.478 0.00 0.00 0.00 2.67
5746 6654 2.672381 GCTTGTGTTGTTTGTGTGCATT 59.328 40.909 0.00 0.00 0.00 3.56
5747 6655 2.270047 GCTTGTGTTGTTTGTGTGCAT 58.730 42.857 0.00 0.00 0.00 3.96
5748 6656 1.000171 TGCTTGTGTTGTTTGTGTGCA 60.000 42.857 0.00 0.00 0.00 4.57
5749 6657 1.707632 TGCTTGTGTTGTTTGTGTGC 58.292 45.000 0.00 0.00 0.00 4.57
5750 6658 4.265085 GTGTATGCTTGTGTTGTTTGTGTG 59.735 41.667 0.00 0.00 0.00 3.82
5751 6659 4.082517 TGTGTATGCTTGTGTTGTTTGTGT 60.083 37.500 0.00 0.00 0.00 3.72
5752 6660 4.265085 GTGTGTATGCTTGTGTTGTTTGTG 59.735 41.667 0.00 0.00 0.00 3.33
5753 6661 4.082517 TGTGTGTATGCTTGTGTTGTTTGT 60.083 37.500 0.00 0.00 0.00 2.83
5754 6662 4.265085 GTGTGTGTATGCTTGTGTTGTTTG 59.735 41.667 0.00 0.00 0.00 2.93
5755 6663 4.082517 TGTGTGTGTATGCTTGTGTTGTTT 60.083 37.500 0.00 0.00 0.00 2.83
5756 6664 3.441922 TGTGTGTGTATGCTTGTGTTGTT 59.558 39.130 0.00 0.00 0.00 2.83
5757 6665 3.013219 TGTGTGTGTATGCTTGTGTTGT 58.987 40.909 0.00 0.00 0.00 3.32
5758 6666 3.181502 TGTGTGTGTGTATGCTTGTGTTG 60.182 43.478 0.00 0.00 0.00 3.33
5759 6667 3.013219 TGTGTGTGTGTATGCTTGTGTT 58.987 40.909 0.00 0.00 0.00 3.32
5760 6668 2.354510 GTGTGTGTGTGTATGCTTGTGT 59.645 45.455 0.00 0.00 0.00 3.72
5761 6669 2.354199 TGTGTGTGTGTGTATGCTTGTG 59.646 45.455 0.00 0.00 0.00 3.33
5762 6670 2.354510 GTGTGTGTGTGTGTATGCTTGT 59.645 45.455 0.00 0.00 0.00 3.16
5763 6671 2.354199 TGTGTGTGTGTGTGTATGCTTG 59.646 45.455 0.00 0.00 0.00 4.01
5764 6672 2.354510 GTGTGTGTGTGTGTGTATGCTT 59.645 45.455 0.00 0.00 0.00 3.91
5765 6673 1.939934 GTGTGTGTGTGTGTGTATGCT 59.060 47.619 0.00 0.00 0.00 3.79
5766 6674 1.668237 TGTGTGTGTGTGTGTGTATGC 59.332 47.619 0.00 0.00 0.00 3.14
5767 6675 2.675348 TGTGTGTGTGTGTGTGTGTATG 59.325 45.455 0.00 0.00 0.00 2.39
5768 6676 2.979240 TGTGTGTGTGTGTGTGTGTAT 58.021 42.857 0.00 0.00 0.00 2.29
5769 6677 2.457366 TGTGTGTGTGTGTGTGTGTA 57.543 45.000 0.00 0.00 0.00 2.90
5770 6678 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
5771 6679 2.675348 TGTATGTGTGTGTGTGTGTGTG 59.325 45.455 0.00 0.00 0.00 3.82
5772 6680 2.979240 TGTATGTGTGTGTGTGTGTGT 58.021 42.857 0.00 0.00 0.00 3.72
5773 6681 4.094911 GTTTGTATGTGTGTGTGTGTGTG 58.905 43.478 0.00 0.00 0.00 3.82
5774 6682 3.753797 TGTTTGTATGTGTGTGTGTGTGT 59.246 39.130 0.00 0.00 0.00 3.72
5775 6683 4.341935 CTGTTTGTATGTGTGTGTGTGTG 58.658 43.478 0.00 0.00 0.00 3.82
5776 6684 3.181501 GCTGTTTGTATGTGTGTGTGTGT 60.182 43.478 0.00 0.00 0.00 3.72
5777 6685 3.362295 GCTGTTTGTATGTGTGTGTGTG 58.638 45.455 0.00 0.00 0.00 3.82
5778 6686 2.357637 GGCTGTTTGTATGTGTGTGTGT 59.642 45.455 0.00 0.00 0.00 3.72
5779 6687 2.618241 AGGCTGTTTGTATGTGTGTGTG 59.382 45.455 0.00 0.00 0.00 3.82
5780 6688 2.878406 GAGGCTGTTTGTATGTGTGTGT 59.122 45.455 0.00 0.00 0.00 3.72
5781 6689 2.877786 TGAGGCTGTTTGTATGTGTGTG 59.122 45.455 0.00 0.00 0.00 3.82
5782 6690 2.878406 GTGAGGCTGTTTGTATGTGTGT 59.122 45.455 0.00 0.00 0.00 3.72
5783 6691 2.226437 GGTGAGGCTGTTTGTATGTGTG 59.774 50.000 0.00 0.00 0.00 3.82
5784 6692 2.158682 TGGTGAGGCTGTTTGTATGTGT 60.159 45.455 0.00 0.00 0.00 3.72
5785 6693 2.485426 CTGGTGAGGCTGTTTGTATGTG 59.515 50.000 0.00 0.00 0.00 3.21
5786 6694 2.783135 CTGGTGAGGCTGTTTGTATGT 58.217 47.619 0.00 0.00 0.00 2.29
5787 6695 1.470098 GCTGGTGAGGCTGTTTGTATG 59.530 52.381 0.00 0.00 0.00 2.39
5788 6696 1.073763 TGCTGGTGAGGCTGTTTGTAT 59.926 47.619 0.00 0.00 0.00 2.29
5789 6697 0.472044 TGCTGGTGAGGCTGTTTGTA 59.528 50.000 0.00 0.00 0.00 2.41
5790 6698 0.395586 TTGCTGGTGAGGCTGTTTGT 60.396 50.000 0.00 0.00 0.00 2.83
5791 6699 0.746063 TTTGCTGGTGAGGCTGTTTG 59.254 50.000 0.00 0.00 0.00 2.93
5792 6700 1.035139 CTTTGCTGGTGAGGCTGTTT 58.965 50.000 0.00 0.00 0.00 2.83
5793 6701 0.183492 TCTTTGCTGGTGAGGCTGTT 59.817 50.000 0.00 0.00 0.00 3.16
5794 6702 0.250640 CTCTTTGCTGGTGAGGCTGT 60.251 55.000 0.00 0.00 0.00 4.40
5795 6703 1.584380 GCTCTTTGCTGGTGAGGCTG 61.584 60.000 0.00 0.00 38.95 4.85
5796 6704 1.303155 GCTCTTTGCTGGTGAGGCT 60.303 57.895 0.00 0.00 38.95 4.58
5797 6705 2.338785 GGCTCTTTGCTGGTGAGGC 61.339 63.158 0.00 0.00 43.97 4.70
5798 6706 0.538057 TTGGCTCTTTGCTGGTGAGG 60.538 55.000 0.00 0.00 42.39 3.86
5799 6707 0.879765 CTTGGCTCTTTGCTGGTGAG 59.120 55.000 0.00 0.00 42.39 3.51
5800 6708 0.183492 ACTTGGCTCTTTGCTGGTGA 59.817 50.000 0.00 0.00 42.39 4.02
5801 6709 0.595095 GACTTGGCTCTTTGCTGGTG 59.405 55.000 0.00 0.00 42.39 4.17
5802 6710 0.183492 TGACTTGGCTCTTTGCTGGT 59.817 50.000 0.00 0.00 42.39 4.00
5803 6711 1.542492 ATGACTTGGCTCTTTGCTGG 58.458 50.000 0.00 0.00 42.39 4.85
5804 6712 3.341823 AGTATGACTTGGCTCTTTGCTG 58.658 45.455 0.00 0.00 42.39 4.41
5805 6713 3.710209 AGTATGACTTGGCTCTTTGCT 57.290 42.857 0.00 0.00 42.39 3.91
5806 6714 4.568760 GTCTAGTATGACTTGGCTCTTTGC 59.431 45.833 0.00 0.00 36.13 3.68
5807 6715 5.112686 GGTCTAGTATGACTTGGCTCTTTG 58.887 45.833 0.00 0.00 37.16 2.77
5808 6716 4.777896 TGGTCTAGTATGACTTGGCTCTTT 59.222 41.667 0.00 0.00 37.16 2.52
5809 6717 4.353777 TGGTCTAGTATGACTTGGCTCTT 58.646 43.478 0.00 0.00 37.16 2.85
5810 6718 3.982516 TGGTCTAGTATGACTTGGCTCT 58.017 45.455 0.00 0.00 37.16 4.09
5811 6719 4.737855 TTGGTCTAGTATGACTTGGCTC 57.262 45.455 0.00 0.00 37.16 4.70
5812 6720 5.013183 AGTTTTGGTCTAGTATGACTTGGCT 59.987 40.000 0.00 0.00 37.16 4.75
5813 6721 5.246307 AGTTTTGGTCTAGTATGACTTGGC 58.754 41.667 0.00 0.00 37.16 4.52
5814 6722 7.011482 GCATAGTTTTGGTCTAGTATGACTTGG 59.989 40.741 0.00 0.00 37.16 3.61
5815 6723 7.011482 GGCATAGTTTTGGTCTAGTATGACTTG 59.989 40.741 0.00 0.00 34.32 3.16
5816 6724 7.048512 GGCATAGTTTTGGTCTAGTATGACTT 58.951 38.462 0.00 0.00 34.32 3.01
5817 6725 6.384305 AGGCATAGTTTTGGTCTAGTATGACT 59.616 38.462 0.00 0.00 39.90 3.41
5818 6726 6.583562 AGGCATAGTTTTGGTCTAGTATGAC 58.416 40.000 0.00 0.00 36.40 3.06
5819 6727 6.808321 AGGCATAGTTTTGGTCTAGTATGA 57.192 37.500 0.00 0.00 32.02 2.15
5820 6728 7.155328 CCTAGGCATAGTTTTGGTCTAGTATG 58.845 42.308 4.47 0.00 33.01 2.39
5821 6729 6.239629 GCCTAGGCATAGTTTTGGTCTAGTAT 60.240 42.308 29.33 0.00 41.49 2.12
5822 6730 5.070047 GCCTAGGCATAGTTTTGGTCTAGTA 59.930 44.000 29.33 0.00 41.49 1.82
5823 6731 4.141688 GCCTAGGCATAGTTTTGGTCTAGT 60.142 45.833 29.33 0.00 41.49 2.57
5824 6732 4.381411 GCCTAGGCATAGTTTTGGTCTAG 58.619 47.826 29.33 0.00 41.49 2.43
5825 6733 3.181469 CGCCTAGGCATAGTTTTGGTCTA 60.181 47.826 32.47 0.00 42.06 2.59
5826 6734 2.420129 CGCCTAGGCATAGTTTTGGTCT 60.420 50.000 32.47 0.00 42.06 3.85
5827 6735 1.940613 CGCCTAGGCATAGTTTTGGTC 59.059 52.381 32.47 0.00 42.06 4.02
5828 6736 1.408266 CCGCCTAGGCATAGTTTTGGT 60.408 52.381 32.47 0.00 42.06 3.67
5829 6737 1.134220 TCCGCCTAGGCATAGTTTTGG 60.134 52.381 32.47 21.85 42.06 3.28
5830 6738 2.158957 TCTCCGCCTAGGCATAGTTTTG 60.159 50.000 32.47 13.80 42.06 2.44
5831 6739 2.103263 CTCTCCGCCTAGGCATAGTTTT 59.897 50.000 32.47 0.00 42.06 2.43
5832 6740 1.689273 CTCTCCGCCTAGGCATAGTTT 59.311 52.381 32.47 0.00 42.06 2.66
5833 6741 1.133450 TCTCTCCGCCTAGGCATAGTT 60.133 52.381 32.47 0.00 42.06 2.24
5834 6742 0.478942 TCTCTCCGCCTAGGCATAGT 59.521 55.000 32.47 0.00 42.06 2.12
5835 6743 1.621992 TTCTCTCCGCCTAGGCATAG 58.378 55.000 32.47 26.30 42.06 2.23
5836 6744 2.082140 TTTCTCTCCGCCTAGGCATA 57.918 50.000 32.47 18.63 42.06 3.14
5837 6745 1.204146 TTTTCTCTCCGCCTAGGCAT 58.796 50.000 32.47 0.00 42.06 4.40
5838 6746 0.981183 TTTTTCTCTCCGCCTAGGCA 59.019 50.000 32.47 14.09 42.06 4.75
5839 6747 3.855159 TTTTTCTCTCCGCCTAGGC 57.145 52.632 24.75 24.75 40.77 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.