Multiple sequence alignment - TraesCS4A01G197600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G197600 chr4A 100.000 7105 0 0 887 7991 481408916 481416020 0.000000e+00 13121.0
1 TraesCS4A01G197600 chr4A 98.065 775 6 2 3037 3802 16976952 16976178 0.000000e+00 1339.0
2 TraesCS4A01G197600 chr4A 100.000 648 0 0 1 648 481408030 481408677 0.000000e+00 1197.0
3 TraesCS4A01G197600 chr4A 84.235 425 50 13 222 634 479901324 479901743 1.620000e-106 398.0
4 TraesCS4A01G197600 chr4A 81.571 331 45 10 2257 2575 481419740 481419414 7.960000e-65 259.0
5 TraesCS4A01G197600 chr4A 86.577 149 17 2 7310 7457 284633149 284633295 2.310000e-35 161.0
6 TraesCS4A01G197600 chr4A 100.000 85 0 0 2868 2952 201146534 201146618 2.990000e-34 158.0
7 TraesCS4A01G197600 chr4A 94.737 57 3 0 5944 6000 664892824 664892768 1.100000e-13 89.8
8 TraesCS4A01G197600 chr4B 96.207 2162 48 10 3806 5943 136678842 136676691 0.000000e+00 3507.0
9 TraesCS4A01G197600 chr4B 97.267 1976 34 7 910 2869 136680906 136678935 0.000000e+00 3332.0
10 TraesCS4A01G197600 chr4B 93.575 856 37 9 6000 6845 136676707 136675860 0.000000e+00 1260.0
11 TraesCS4A01G197600 chr4B 93.846 650 34 5 2 648 136681695 136681049 0.000000e+00 974.0
12 TraesCS4A01G197600 chr4B 94.044 319 19 0 6847 7165 136675740 136675422 1.210000e-132 484.0
13 TraesCS4A01G197600 chr4B 80.665 331 48 10 2257 2575 136670877 136671203 8.010000e-60 243.0
14 TraesCS4A01G197600 chr4B 77.062 388 67 16 5223 5606 136672587 136672956 3.780000e-48 204.0
15 TraesCS4A01G197600 chr4B 100.000 89 0 0 2951 3039 136678936 136678848 1.780000e-36 165.0
16 TraesCS4A01G197600 chr4B 93.000 100 6 1 2854 2952 31522626 31522725 2.320000e-30 145.0
17 TraesCS4A01G197600 chr4D 96.086 1993 57 9 889 2869 96627995 96626012 0.000000e+00 3229.0
18 TraesCS4A01G197600 chr4D 92.523 1217 34 16 3807 4997 96625928 96624743 0.000000e+00 1690.0
19 TraesCS4A01G197600 chr4D 95.751 1012 36 5 6297 7303 96623110 96622101 0.000000e+00 1624.0
20 TraesCS4A01G197600 chr4D 97.746 843 12 2 5020 5862 96624357 96623522 0.000000e+00 1445.0
21 TraesCS4A01G197600 chr4D 89.893 653 43 13 2 647 96628778 96628142 0.000000e+00 819.0
22 TraesCS4A01G197600 chr4D 90.741 324 16 6 6000 6314 96623498 96623180 3.450000e-113 420.0
23 TraesCS4A01G197600 chr4D 93.220 177 12 0 7490 7666 96622106 96621930 2.210000e-65 261.0
24 TraesCS4A01G197600 chr4D 81.040 327 51 8 2257 2575 96607323 96607646 4.790000e-62 250.0
25 TraesCS4A01G197600 chr4D 81.229 293 29 9 7723 7990 96621930 96621639 6.280000e-51 213.0
26 TraesCS4A01G197600 chr4D 77.062 388 67 18 5223 5606 96608991 96609360 3.780000e-48 204.0
27 TraesCS4A01G197600 chr4D 85.906 149 18 3 7310 7457 370369607 370369753 1.070000e-33 156.0
28 TraesCS4A01G197600 chr4D 86.517 89 2 1 2951 3039 96626013 96625935 1.100000e-13 89.8
29 TraesCS4A01G197600 chr4D 95.122 41 2 0 5903 5943 96623522 96623482 1.860000e-06 65.8
30 TraesCS4A01G197600 chr3A 97.040 777 14 1 3035 3802 100836881 100837657 0.000000e+00 1299.0
31 TraesCS4A01G197600 chr3A 84.810 395 52 6 217 606 20295033 20295424 2.700000e-104 390.0
32 TraesCS4A01G197600 chr3A 91.803 61 4 1 5944 6004 737122888 737122947 5.140000e-12 84.2
33 TraesCS4A01G197600 chr7A 95.674 786 14 3 3037 3802 126942643 126941858 0.000000e+00 1245.0
34 TraesCS4A01G197600 chr7A 84.397 423 54 9 220 633 715766903 715767322 9.660000e-109 405.0
35 TraesCS4A01G197600 chr7A 94.706 170 9 0 3039 3208 688854121 688854290 1.710000e-66 265.0
36 TraesCS4A01G197600 chr7A 86.127 173 15 6 7310 7478 190016859 190016692 2.290000e-40 178.0
37 TraesCS4A01G197600 chr7A 82.759 203 32 3 3576 3776 734692439 734692238 2.290000e-40 178.0
38 TraesCS4A01G197600 chr2D 84.309 427 49 12 216 633 607809820 607810237 1.250000e-107 401.0
39 TraesCS4A01G197600 chr2D 86.059 373 44 8 219 584 513965745 513966116 2.090000e-105 394.0
40 TraesCS4A01G197600 chr2D 84.872 390 43 11 223 606 440593201 440592822 5.850000e-101 379.0
41 TraesCS4A01G197600 chr2D 84.277 318 21 14 3305 3597 482806246 482806559 4.720000e-72 283.0
42 TraesCS4A01G197600 chr2D 84.472 161 12 5 3588 3747 483043620 483043768 6.460000e-31 147.0
43 TraesCS4A01G197600 chr2D 81.879 149 26 1 3655 3802 318081208 318081356 3.030000e-24 124.0
44 TraesCS4A01G197600 chr2D 93.443 61 3 1 3305 3364 577822046 577822106 1.100000e-13 89.8
45 TraesCS4A01G197600 chr2D 88.732 71 5 3 3296 3364 592773696 592773765 5.140000e-12 84.2
46 TraesCS4A01G197600 chr1A 83.962 424 53 12 222 634 376029694 376030113 7.520000e-105 392.0
47 TraesCS4A01G197600 chr1A 95.960 99 3 1 2868 2965 64254242 64254144 8.300000e-35 159.0
48 TraesCS4A01G197600 chr5B 80.846 449 34 19 3233 3651 287446280 287445854 1.010000e-78 305.0
49 TraesCS4A01G197600 chr5B 91.329 173 13 1 3036 3208 287446691 287446521 1.340000e-57 235.0
50 TraesCS4A01G197600 chr5B 85.326 184 11 4 3305 3473 440100329 440100147 8.240000e-40 176.0
51 TraesCS4A01G197600 chr5B 91.736 121 9 1 3651 3771 287441600 287441481 4.960000e-37 167.0
52 TraesCS4A01G197600 chr5B 90.000 110 6 5 2861 2968 180061442 180061548 3.890000e-28 137.0
53 TraesCS4A01G197600 chr5B 88.298 94 11 0 3709 3802 492578840 492578747 6.550000e-21 113.0
54 TraesCS4A01G197600 chr5B 92.000 75 6 0 3557 3631 712390102 712390028 1.100000e-18 106.0
55 TraesCS4A01G197600 chr2A 84.262 305 19 14 3306 3583 625294098 625294400 3.680000e-68 270.0
56 TraesCS4A01G197600 chr2A 81.448 221 34 7 7703 7918 199278490 199278708 2.960000e-39 174.0
57 TraesCS4A01G197600 chr2A 87.417 151 17 2 7309 7458 690332945 690333094 1.070000e-38 172.0
58 TraesCS4A01G197600 chr7B 92.308 182 12 2 3542 3722 708092947 708092767 2.860000e-64 257.0
59 TraesCS4A01G197600 chr7B 93.293 164 11 0 3045 3208 708093319 708093156 8.010000e-60 243.0
60 TraesCS4A01G197600 chr7B 95.789 95 4 0 3708 3802 708092745 708092651 3.860000e-33 154.0
61 TraesCS4A01G197600 chr7B 97.222 72 2 0 3557 3628 803668 803739 1.090000e-23 122.0
62 TraesCS4A01G197600 chr7B 94.737 57 3 0 5944 6000 529195713 529195769 1.100000e-13 89.8
63 TraesCS4A01G197600 chr3D 88.136 177 19 2 3033 3208 326003515 326003690 8.130000e-50 209.0
64 TraesCS4A01G197600 chr3D 87.429 175 20 2 3035 3208 254750869 254750696 4.890000e-47 200.0
65 TraesCS4A01G197600 chr3D 84.831 178 14 4 3308 3473 577440125 577439949 4.960000e-37 167.0
66 TraesCS4A01G197600 chr3D 93.182 44 0 3 3259 3300 481521056 481521098 2.410000e-05 62.1
67 TraesCS4A01G197600 chr5D 87.861 173 19 2 3037 3208 476758011 476758182 1.360000e-47 202.0
68 TraesCS4A01G197600 chr5D 87.838 148 18 0 7310 7457 582409 582262 2.960000e-39 174.0
69 TraesCS4A01G197600 chr5D 84.146 164 21 3 2144 2307 332598081 332597923 3.860000e-33 154.0
70 TraesCS4A01G197600 chr5D 91.429 105 6 3 2862 2964 7421452 7421555 3.010000e-29 141.0
71 TraesCS4A01G197600 chr5D 93.182 44 0 3 3259 3300 233745150 233745192 2.410000e-05 62.1
72 TraesCS4A01G197600 chr5D 93.182 44 0 3 3259 3300 476758497 476758539 2.410000e-05 62.1
73 TraesCS4A01G197600 chr7D 88.158 152 17 1 7307 7457 171315993 171316144 6.370000e-41 180.0
74 TraesCS4A01G197600 chr7D 84.615 156 21 1 2144 2299 139896370 139896522 1.390000e-32 152.0
75 TraesCS4A01G197600 chr7D 91.837 49 1 3 3259 3305 552268792 552268745 1.860000e-06 65.8
76 TraesCS4A01G197600 chr6D 88.591 149 16 1 7310 7457 308575387 308575239 6.370000e-41 180.0
77 TraesCS4A01G197600 chr6D 93.182 44 0 3 3259 3300 168067717 168067675 2.410000e-05 62.1
78 TraesCS4A01G197600 chr6B 86.441 177 8 8 3305 3466 648565081 648565256 6.370000e-41 180.0
79 TraesCS4A01G197600 chr6B 86.364 154 18 3 7305 7457 487031762 487031913 1.780000e-36 165.0
80 TraesCS4A01G197600 chr6B 86.577 149 14 2 7310 7457 120133172 120133029 8.300000e-35 159.0
81 TraesCS4A01G197600 chr6B 83.125 160 16 8 2144 2299 84824094 84824246 1.400000e-27 135.0
82 TraesCS4A01G197600 chr6B 91.803 61 4 1 3305 3364 456773809 456773869 5.140000e-12 84.2
83 TraesCS4A01G197600 chr3B 85.326 184 11 5 3305 3473 403865450 403865268 8.240000e-40 176.0
84 TraesCS4A01G197600 chr3B 100.000 85 0 0 2868 2952 245979614 245979698 2.990000e-34 158.0
85 TraesCS4A01G197600 chr1D 85.326 184 11 8 3305 3473 421492429 421492247 8.240000e-40 176.0
86 TraesCS4A01G197600 chr1D 93.750 96 6 0 3707 3802 25217276 25217371 2.320000e-30 145.0
87 TraesCS4A01G197600 chr1D 89.231 65 3 3 5944 6006 140526973 140526911 2.390000e-10 78.7
88 TraesCS4A01G197600 chr1D 95.652 46 1 1 7435 7479 481366061 481366106 1.110000e-08 73.1
89 TraesCS4A01G197600 chr2B 87.333 150 18 1 3586 3735 567395653 567395801 3.830000e-38 171.0
90 TraesCS4A01G197600 chr2B 92.857 98 6 1 2868 2965 738486745 738486649 3.010000e-29 141.0
91 TraesCS4A01G197600 chr6A 79.545 220 38 7 7703 7917 515408713 515408930 5.000000e-32 150.0
92 TraesCS4A01G197600 chr6A 92.157 102 6 2 2867 2967 74582682 74582582 8.360000e-30 143.0
93 TraesCS4A01G197600 chr6A 82.911 158 20 6 2144 2299 4247284 4247436 1.400000e-27 135.0
94 TraesCS4A01G197600 chr6A 82.911 158 20 5 2144 2299 4367615 4367767 1.400000e-27 135.0
95 TraesCS4A01G197600 chr6A 92.982 57 4 0 5944 6000 58811510 58811566 5.140000e-12 84.2
96 TraesCS4A01G197600 chr1B 88.235 119 8 5 2841 2958 509151176 509151063 3.890000e-28 137.0
97 TraesCS4A01G197600 chr1B 91.935 62 3 1 5941 6002 121481183 121481242 1.430000e-12 86.1
98 TraesCS4A01G197600 chr1B 91.935 62 3 1 5941 6002 121603876 121603935 1.430000e-12 86.1
99 TraesCS4A01G197600 chr1B 90.323 62 4 1 5941 6002 121559390 121559449 6.650000e-11 80.5
100 TraesCS4A01G197600 chr1B 90.323 62 4 1 5941 6002 121709131 121709190 6.650000e-11 80.5
101 TraesCS4A01G197600 chrUn 82.278 158 21 5 2144 2299 62335078 62334926 6.510000e-26 130.0
102 TraesCS4A01G197600 chrUn 82.278 158 21 5 2144 2299 62396097 62395945 6.510000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G197600 chr4A 481408030 481416020 7990 False 7159.000000 13121 100.000000 1 7991 2 chr4A.!!$F4 7990
1 TraesCS4A01G197600 chr4A 16976178 16976952 774 True 1339.000000 1339 98.065000 3037 3802 1 chr4A.!!$R1 765
2 TraesCS4A01G197600 chr4B 136675422 136681695 6273 True 1620.333333 3507 95.823167 2 7165 6 chr4B.!!$R1 7163
3 TraesCS4A01G197600 chr4B 136670877 136672956 2079 False 223.500000 243 78.863500 2257 5606 2 chr4B.!!$F2 3349
4 TraesCS4A01G197600 chr4D 96621639 96628778 7139 True 985.660000 3229 91.882800 2 7990 10 chr4D.!!$R1 7988
5 TraesCS4A01G197600 chr4D 96607323 96609360 2037 False 227.000000 250 79.051000 2257 5606 2 chr4D.!!$F2 3349
6 TraesCS4A01G197600 chr3A 100836881 100837657 776 False 1299.000000 1299 97.040000 3035 3802 1 chr3A.!!$F2 767
7 TraesCS4A01G197600 chr7A 126941858 126942643 785 True 1245.000000 1245 95.674000 3037 3802 1 chr7A.!!$R1 765
8 TraesCS4A01G197600 chr5B 287445854 287446691 837 True 270.000000 305 86.087500 3036 3651 2 chr5B.!!$R5 615
9 TraesCS4A01G197600 chr7B 708092651 708093319 668 True 218.000000 257 93.796667 3045 3802 3 chr7B.!!$R1 757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 1.199789 TCATTTCGCCTGTTCACATGC 59.800 47.619 0.0 0.0 34.74 4.06 F
1216 1243 1.679153 CTAGCTTCTTCCCTCCGAGAC 59.321 57.143 0.0 0.0 0.00 3.36 F
1303 1330 1.074926 GGATGCAGGAGGAGGAGGA 60.075 63.158 0.0 0.0 0.00 3.71 F
2516 2562 1.442769 AGAGTTGTATGCTGGTTGCG 58.557 50.000 0.0 0.0 46.63 4.85 F
2555 2601 1.740025 GCTGCTATTGACCAACTCACC 59.260 52.381 0.0 0.0 0.00 4.02 F
2878 2948 2.732763 GGTAACTCTTACTCCCTCCGT 58.267 52.381 0.0 0.0 36.39 4.69 F
3802 4173 1.821666 GCCACAAAAGAACTGGCCCTA 60.822 52.381 0.0 0.0 44.15 3.53 F
3841 4212 3.151554 GCACCAGATCATAATCATGCCA 58.848 45.455 0.0 0.0 34.19 4.92 F
4827 5365 1.984424 TGGTGTGACCATCCAGATTCA 59.016 47.619 0.0 0.0 44.79 2.57 F
5609 6614 1.973281 AGGCATGAACAAGGTGCGG 60.973 57.895 0.0 0.0 39.69 5.69 F
5961 6966 0.030504 TTGGTTGTGTGCATCGCTTG 59.969 50.000 0.0 0.0 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1303 1330 0.036010 CTCACAACCATCCCGCTTCT 60.036 55.000 0.00 0.00 0.00 2.85 R
2516 2562 1.098050 CAGGCCTGTAAACATCTGCC 58.902 55.000 25.53 9.29 36.06 4.85 R
2555 2601 4.758165 ACGTGTACCTTTTTACCCAGAATG 59.242 41.667 0.00 0.00 0.00 2.67 R
3651 3986 1.392710 TAGAGTAGCTTCCCGCAGCC 61.393 60.000 0.00 0.00 41.12 4.85 R
3802 4173 1.831106 TGCCCAAGATCTGTGTACGAT 59.169 47.619 0.00 0.00 0.00 3.73 R
4626 5116 2.034432 CAGTGCGACTCTAGCAGATGAT 59.966 50.000 0.00 0.00 46.10 2.45 R
4642 5132 2.484264 CAGCAAGGGTAAGTAACAGTGC 59.516 50.000 0.00 0.00 33.28 4.40 R
5555 6560 2.642139 TACGACTGAACGAACCCATC 57.358 50.000 0.00 0.00 37.03 3.51 R
5942 6947 0.030504 CAAGCGATGCACACAACCAA 59.969 50.000 0.00 0.00 0.00 3.67 R
6910 8136 0.179073 CTGCGCTTACCAGTAGCCAT 60.179 55.000 9.73 0.00 0.00 4.40 R
7719 8945 0.036294 AGTCTAAGCAAACCCCGCTC 60.036 55.000 0.00 0.00 39.29 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 2.783135 AGTCATTTCGCCTGTTCACAT 58.217 42.857 0.00 0.00 0.00 3.21
62 63 1.199789 TCATTTCGCCTGTTCACATGC 59.800 47.619 0.00 0.00 34.74 4.06
120 121 3.261580 CATCCACAAGCGACAATGAGTA 58.738 45.455 0.00 0.00 0.00 2.59
188 189 1.728971 GCCTGAGTGTTTGATCTCACG 59.271 52.381 0.00 0.00 39.25 4.35
189 190 2.341257 CCTGAGTGTTTGATCTCACGG 58.659 52.381 0.00 0.00 39.25 4.94
465 470 9.552114 CACTATTCACATCTGAATTTGTCTTTC 57.448 33.333 1.29 0.00 43.48 2.62
992 1019 3.764466 CAGAACGCTCCGCCCTCT 61.764 66.667 0.00 0.00 0.00 3.69
993 1020 3.453679 AGAACGCTCCGCCCTCTC 61.454 66.667 0.00 0.00 0.00 3.20
1216 1243 1.679153 CTAGCTTCTTCCCTCCGAGAC 59.321 57.143 0.00 0.00 0.00 3.36
1247 1274 4.576879 ACCTTATCTCTTTTTGACCGGAC 58.423 43.478 9.46 1.07 0.00 4.79
1303 1330 1.074926 GGATGCAGGAGGAGGAGGA 60.075 63.158 0.00 0.00 0.00 3.71
1539 1569 5.772169 TCCCAAAAATATGTGTGATGTGTCA 59.228 36.000 0.00 0.00 0.00 3.58
1655 1685 2.333688 TGTGTGGATCGTTTTGTCCA 57.666 45.000 0.00 0.00 42.03 4.02
1658 1688 3.634448 TGTGTGGATCGTTTTGTCCAAAT 59.366 39.130 0.00 0.00 45.50 2.32
1736 1767 7.094890 CCTCTGTAGCTTTGCTATAAATCATGG 60.095 40.741 0.00 0.00 43.30 3.66
2096 2134 7.640616 TTGCATGTGACAAATTTTCTATGTG 57.359 32.000 0.00 0.00 0.00 3.21
2129 2167 2.621055 GCCATTATTGACGGGTGCATAA 59.379 45.455 0.00 0.00 0.00 1.90
2516 2562 1.442769 AGAGTTGTATGCTGGTTGCG 58.557 50.000 0.00 0.00 46.63 4.85
2555 2601 1.740025 GCTGCTATTGACCAACTCACC 59.260 52.381 0.00 0.00 0.00 4.02
2684 2735 5.788450 AGCTACCAGTAATGCATATCTGTC 58.212 41.667 21.45 12.18 0.00 3.51
2869 2939 5.582665 CTGGAAGATTGCAGGTAACTCTTAC 59.417 44.000 6.21 0.00 41.87 2.34
2870 2940 6.575254 CTGGAAGATTGCAGGTAACTCTTACT 60.575 42.308 6.21 0.00 41.87 2.24
2871 2941 8.321373 CTGGAAGATTGCAGGTAACTCTTACTC 61.321 44.444 6.21 0.00 41.87 2.59
2878 2948 2.732763 GGTAACTCTTACTCCCTCCGT 58.267 52.381 0.00 0.00 36.39 4.69
2879 2949 3.891049 GGTAACTCTTACTCCCTCCGTA 58.109 50.000 0.00 0.00 36.39 4.02
2880 2950 4.273318 GGTAACTCTTACTCCCTCCGTAA 58.727 47.826 0.00 0.00 36.39 3.18
2881 2951 4.706962 GGTAACTCTTACTCCCTCCGTAAA 59.293 45.833 0.00 0.00 36.39 2.01
2882 2952 4.797800 AACTCTTACTCCCTCCGTAAAC 57.202 45.455 0.00 0.00 0.00 2.01
2883 2953 4.044946 ACTCTTACTCCCTCCGTAAACT 57.955 45.455 0.00 0.00 0.00 2.66
2884 2954 5.184892 ACTCTTACTCCCTCCGTAAACTA 57.815 43.478 0.00 0.00 0.00 2.24
2885 2955 5.574188 ACTCTTACTCCCTCCGTAAACTAA 58.426 41.667 0.00 0.00 0.00 2.24
2886 2956 6.193504 ACTCTTACTCCCTCCGTAAACTAAT 58.806 40.000 0.00 0.00 0.00 1.73
2887 2957 7.349598 ACTCTTACTCCCTCCGTAAACTAATA 58.650 38.462 0.00 0.00 0.00 0.98
2888 2958 8.003629 ACTCTTACTCCCTCCGTAAACTAATAT 58.996 37.037 0.00 0.00 0.00 1.28
2889 2959 9.512588 CTCTTACTCCCTCCGTAAACTAATATA 57.487 37.037 0.00 0.00 0.00 0.86
2890 2960 9.866655 TCTTACTCCCTCCGTAAACTAATATAA 57.133 33.333 0.00 0.00 0.00 0.98
2892 2962 9.866655 TTACTCCCTCCGTAAACTAATATAAGA 57.133 33.333 0.00 0.00 0.00 2.10
2893 2963 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2894 2964 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2895 2965 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2896 2966 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2897 2967 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2898 2968 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2899 2969 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2900 2970 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2901 2971 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2943 3013 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2944 3014 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2945 3015 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2946 3016 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2947 3017 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2948 3018 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
2949 3019 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
2950 3020 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
2951 3021 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
3651 3986 9.543783 GTATACCCCTTCAGTTTTAAGTCATAG 57.456 37.037 0.00 0.00 0.00 2.23
3802 4173 1.821666 GCCACAAAAGAACTGGCCCTA 60.822 52.381 0.00 0.00 44.15 3.53
3841 4212 3.151554 GCACCAGATCATAATCATGCCA 58.848 45.455 0.00 0.00 34.19 4.92
3985 4356 4.672587 AACTCAGTCTAGTGCTTCAACA 57.327 40.909 0.00 0.00 0.00 3.33
4151 4522 6.408035 TCTGTTACTTCAACTGTGTTTACCA 58.592 36.000 0.00 0.00 38.05 3.25
4166 4537 3.688694 TTACCAAGCACAACCGATACT 57.311 42.857 0.00 0.00 0.00 2.12
4400 4775 3.898380 TGCTTGGCATGCAGAAAAG 57.102 47.368 22.45 16.86 35.31 2.27
4626 5116 7.442364 CAGGACTTGTTATTCTGAAACTCTTCA 59.558 37.037 0.00 0.00 39.30 3.02
4642 5132 4.275689 ACTCTTCATCATCTGCTAGAGTCG 59.724 45.833 0.00 0.00 39.99 4.18
4827 5365 1.984424 TGGTGTGACCATCCAGATTCA 59.016 47.619 0.00 0.00 44.79 2.57
4969 5515 7.228108 AGGCATTATGACACAAGAGTTGATATG 59.772 37.037 0.00 0.00 0.00 1.78
5109 6018 7.898309 CAGTATAACAGAAAAGTACACGATTGC 59.102 37.037 0.00 0.00 0.00 3.56
5504 6509 8.900983 AGGAATTACAGAAGAAGATTATGAGC 57.099 34.615 0.00 0.00 0.00 4.26
5555 6560 2.159934 GCAAACAAAAGCTATTGCGCAG 60.160 45.455 11.31 0.00 45.42 5.18
5609 6614 1.973281 AGGCATGAACAAGGTGCGG 60.973 57.895 0.00 0.00 39.69 5.69
5780 6785 5.010012 ACAAATCCGTGAAGCTGAGAAAAAT 59.990 36.000 0.00 0.00 0.00 1.82
5900 6905 6.964464 TCCAAACACTTGCTATATTAGGGAA 58.036 36.000 0.00 0.00 0.00 3.97
5905 6910 5.823045 ACACTTGCTATATTAGGGAAAGTGC 59.177 40.000 11.54 0.00 0.00 4.40
5909 6914 6.942532 TGCTATATTAGGGAAAGTGCTTTG 57.057 37.500 1.51 0.00 32.11 2.77
5949 6954 6.664428 ATGTGTAAGCCTTTAATTGGTTGT 57.336 33.333 0.00 0.00 0.00 3.32
5950 6955 5.837437 TGTGTAAGCCTTTAATTGGTTGTG 58.163 37.500 0.00 0.00 0.00 3.33
5951 6956 5.361285 TGTGTAAGCCTTTAATTGGTTGTGT 59.639 36.000 0.00 0.00 0.00 3.72
5952 6957 5.689961 GTGTAAGCCTTTAATTGGTTGTGTG 59.310 40.000 0.00 0.00 0.00 3.82
5953 6958 3.385193 AGCCTTTAATTGGTTGTGTGC 57.615 42.857 0.00 0.00 0.00 4.57
5954 6959 2.697751 AGCCTTTAATTGGTTGTGTGCA 59.302 40.909 0.00 0.00 0.00 4.57
5955 6960 3.324556 AGCCTTTAATTGGTTGTGTGCAT 59.675 39.130 0.00 0.00 0.00 3.96
5956 6961 3.679502 GCCTTTAATTGGTTGTGTGCATC 59.320 43.478 0.00 0.00 0.00 3.91
5957 6962 3.919804 CCTTTAATTGGTTGTGTGCATCG 59.080 43.478 0.00 0.00 0.00 3.84
5958 6963 2.627863 TAATTGGTTGTGTGCATCGC 57.372 45.000 0.00 0.00 0.00 4.58
5959 6964 0.961019 AATTGGTTGTGTGCATCGCT 59.039 45.000 0.00 0.00 0.00 4.93
5960 6965 0.961019 ATTGGTTGTGTGCATCGCTT 59.039 45.000 0.00 0.00 0.00 4.68
5961 6966 0.030504 TTGGTTGTGTGCATCGCTTG 59.969 50.000 0.00 0.00 0.00 4.01
5962 6967 0.817229 TGGTTGTGTGCATCGCTTGA 60.817 50.000 0.00 0.00 0.00 3.02
5963 6968 0.523072 GGTTGTGTGCATCGCTTGAT 59.477 50.000 0.00 0.00 0.00 2.57
5971 6976 1.647629 CATCGCTTGATGCAGAGGC 59.352 57.895 0.00 0.00 42.78 4.70
5972 6977 1.525535 ATCGCTTGATGCAGAGGCC 60.526 57.895 0.00 0.00 43.06 5.19
5973 6978 3.570638 CGCTTGATGCAGAGGCCG 61.571 66.667 0.00 0.00 43.06 6.13
5974 6979 3.207669 GCTTGATGCAGAGGCCGG 61.208 66.667 0.00 0.00 42.31 6.13
5975 6980 2.515523 CTTGATGCAGAGGCCGGG 60.516 66.667 2.18 0.00 40.13 5.73
5976 6981 4.113815 TTGATGCAGAGGCCGGGG 62.114 66.667 2.18 0.00 40.13 5.73
5979 6984 4.815973 ATGCAGAGGCCGGGGGTA 62.816 66.667 2.18 0.00 40.13 3.69
5981 6986 3.489513 GCAGAGGCCGGGGGTAAT 61.490 66.667 2.18 0.00 0.00 1.89
5982 6987 2.829592 CAGAGGCCGGGGGTAATC 59.170 66.667 2.18 0.00 0.00 1.75
5983 6988 2.447959 AGAGGCCGGGGGTAATCC 60.448 66.667 2.18 0.00 0.00 3.01
5984 6989 2.447959 GAGGCCGGGGGTAATCCT 60.448 66.667 2.18 0.00 35.33 3.24
5985 6990 2.447959 AGGCCGGGGGTAATCCTC 60.448 66.667 2.18 0.00 35.33 3.71
5994 6999 2.815158 GGGGTAATCCTCCTTTTTGCA 58.185 47.619 0.00 0.00 35.33 4.08
5995 7000 3.169908 GGGGTAATCCTCCTTTTTGCAA 58.830 45.455 0.00 0.00 35.33 4.08
5996 7001 3.580895 GGGGTAATCCTCCTTTTTGCAAA 59.419 43.478 8.05 8.05 35.33 3.68
5997 7002 4.041075 GGGGTAATCCTCCTTTTTGCAAAA 59.959 41.667 20.46 20.46 35.33 2.44
5998 7003 5.455469 GGGGTAATCCTCCTTTTTGCAAAAA 60.455 40.000 29.97 29.97 34.81 1.94
6080 7092 4.700700 AGTTTGCCAGTAGTTCGTACTTT 58.299 39.130 0.00 0.00 40.27 2.66
6081 7093 4.510340 AGTTTGCCAGTAGTTCGTACTTTG 59.490 41.667 0.00 0.06 40.27 2.77
6119 7136 5.414360 TGATGTGAATAGACAGACTGAAGC 58.586 41.667 10.08 0.00 0.00 3.86
6126 7143 3.331478 AGACAGACTGAAGCTCATTGG 57.669 47.619 10.08 0.00 0.00 3.16
6138 7155 5.419788 TGAAGCTCATTGGCAATCAACTATT 59.580 36.000 10.36 0.93 38.31 1.73
6208 7225 8.458843 GCTGTAGTTTGAAATTATCCTGCTTTA 58.541 33.333 0.00 0.00 0.00 1.85
6272 7289 8.641499 AAATGTCTATGCGTTTCAAAAGAAAA 57.359 26.923 0.00 0.00 0.00 2.29
6273 7290 8.641499 AATGTCTATGCGTTTCAAAAGAAAAA 57.359 26.923 0.00 0.00 0.00 1.94
6322 7426 3.877508 GTGGCATATAACTTGGTGAGGTC 59.122 47.826 0.00 0.00 0.00 3.85
6328 7432 6.543831 GCATATAACTTGGTGAGGTCAGAATT 59.456 38.462 0.00 0.00 0.00 2.17
6336 7440 0.462759 GAGGTCAGAATTGAGGGCCG 60.463 60.000 0.00 0.00 32.98 6.13
6405 7510 1.132640 GCGTGCCAAGTTCATCGAC 59.867 57.895 0.00 0.00 0.00 4.20
6406 7511 1.787847 CGTGCCAAGTTCATCGACC 59.212 57.895 0.00 0.00 0.00 4.79
6565 7673 0.915364 GGAGAAGAGTGGCCAAGGAT 59.085 55.000 7.24 0.00 0.00 3.24
6603 7711 1.606668 GCAGGTTCCGTTGTCATTTCA 59.393 47.619 0.00 0.00 0.00 2.69
6607 7715 2.482721 GGTTCCGTTGTCATTTCATCGT 59.517 45.455 0.00 0.00 0.00 3.73
6849 8075 3.052944 ACCAGGGGCATATTACATGTGTT 60.053 43.478 9.11 0.00 0.00 3.32
6910 8136 0.328926 TGTGATCATTCAGGCTGCCA 59.671 50.000 22.65 0.00 30.85 4.92
6963 8189 2.759973 CTGAGGCAGCGGGACCTA 60.760 66.667 0.00 0.00 36.05 3.08
6994 8220 2.652530 GTTACCGCCGGTGAGACA 59.347 61.111 21.20 0.00 36.19 3.41
7018 8244 4.052518 GCCATGGGGGTCACTGCT 62.053 66.667 15.13 0.00 39.65 4.24
7056 8282 5.047660 ACGGACATATTTGAGATCTCTAGCC 60.048 44.000 22.95 11.55 0.00 3.93
7103 8329 1.136305 GTGTATACGGCCTTGCTCTGA 59.864 52.381 0.00 0.00 0.00 3.27
7169 8395 7.099764 GGAGTGAGTATTTCTGTGATCTTCAA 58.900 38.462 0.00 0.00 0.00 2.69
7216 8442 6.331042 TCCCCTTCAGTCTTGATGATTATCAT 59.669 38.462 7.50 7.50 42.60 2.45
7271 8497 8.506437 CATTGTTGTTACACATCTGTATTGTCT 58.494 33.333 0.00 0.00 32.70 3.41
7274 8500 7.170828 TGTTGTTACACATCTGTATTGTCTGTC 59.829 37.037 0.00 0.00 32.70 3.51
7292 8518 4.151689 TCTGTCGTTGCTTTATTGTGTAGC 59.848 41.667 0.00 0.00 35.50 3.58
7298 8524 4.513198 TGCTTTATTGTGTAGCCCAAAC 57.487 40.909 0.00 0.00 34.03 2.93
7299 8525 3.057876 TGCTTTATTGTGTAGCCCAAACG 60.058 43.478 0.00 0.00 34.03 3.60
7300 8526 3.189702 GCTTTATTGTGTAGCCCAAACGA 59.810 43.478 0.00 0.00 0.00 3.85
7301 8527 4.142469 GCTTTATTGTGTAGCCCAAACGAT 60.142 41.667 0.00 0.00 0.00 3.73
7302 8528 5.621329 GCTTTATTGTGTAGCCCAAACGATT 60.621 40.000 0.00 0.00 0.00 3.34
7303 8529 5.968528 TTATTGTGTAGCCCAAACGATTT 57.031 34.783 0.00 0.00 0.00 2.17
7304 8530 3.634568 TTGTGTAGCCCAAACGATTTG 57.365 42.857 0.00 0.00 40.32 2.32
7305 8531 2.577700 TGTGTAGCCCAAACGATTTGT 58.422 42.857 0.00 0.00 38.98 2.83
7306 8532 3.741249 TGTGTAGCCCAAACGATTTGTA 58.259 40.909 0.00 0.00 38.98 2.41
7307 8533 4.135306 TGTGTAGCCCAAACGATTTGTAA 58.865 39.130 0.00 0.00 38.98 2.41
7308 8534 4.023878 TGTGTAGCCCAAACGATTTGTAAC 60.024 41.667 0.00 0.00 38.98 2.50
7309 8535 4.214758 GTGTAGCCCAAACGATTTGTAACT 59.785 41.667 0.00 0.00 38.98 2.24
7310 8536 5.409214 GTGTAGCCCAAACGATTTGTAACTA 59.591 40.000 0.00 0.00 38.98 2.24
7311 8537 5.409214 TGTAGCCCAAACGATTTGTAACTAC 59.591 40.000 16.64 16.64 38.98 2.73
7312 8538 4.648651 AGCCCAAACGATTTGTAACTACT 58.351 39.130 0.00 0.00 38.98 2.57
7313 8539 4.694037 AGCCCAAACGATTTGTAACTACTC 59.306 41.667 0.00 0.00 38.98 2.59
7314 8540 4.142752 GCCCAAACGATTTGTAACTACTCC 60.143 45.833 0.00 0.00 38.98 3.85
7315 8541 4.393990 CCCAAACGATTTGTAACTACTCCC 59.606 45.833 0.00 0.00 38.98 4.30
7316 8542 5.243207 CCAAACGATTTGTAACTACTCCCT 58.757 41.667 0.00 0.00 38.98 4.20
7317 8543 5.350640 CCAAACGATTTGTAACTACTCCCTC 59.649 44.000 0.00 0.00 38.98 4.30
7318 8544 5.997384 AACGATTTGTAACTACTCCCTCT 57.003 39.130 0.00 0.00 0.00 3.69
7319 8545 5.326200 ACGATTTGTAACTACTCCCTCTG 57.674 43.478 0.00 0.00 0.00 3.35
7320 8546 4.771054 ACGATTTGTAACTACTCCCTCTGT 59.229 41.667 0.00 0.00 0.00 3.41
7321 8547 5.245526 ACGATTTGTAACTACTCCCTCTGTT 59.754 40.000 0.00 0.00 0.00 3.16
7322 8548 6.164176 CGATTTGTAACTACTCCCTCTGTTT 58.836 40.000 0.00 0.00 0.00 2.83
7323 8549 6.310711 CGATTTGTAACTACTCCCTCTGTTTC 59.689 42.308 0.00 0.00 0.00 2.78
7324 8550 6.742559 TTTGTAACTACTCCCTCTGTTTCT 57.257 37.500 0.00 0.00 0.00 2.52
7325 8551 7.844493 TTTGTAACTACTCCCTCTGTTTCTA 57.156 36.000 0.00 0.00 0.00 2.10
7326 8552 7.844493 TTGTAACTACTCCCTCTGTTTCTAA 57.156 36.000 0.00 0.00 0.00 2.10
7327 8553 7.844493 TGTAACTACTCCCTCTGTTTCTAAA 57.156 36.000 0.00 0.00 0.00 1.85
7328 8554 8.431910 TGTAACTACTCCCTCTGTTTCTAAAT 57.568 34.615 0.00 0.00 0.00 1.40
7329 8555 9.537852 TGTAACTACTCCCTCTGTTTCTAAATA 57.462 33.333 0.00 0.00 0.00 1.40
7336 8562 9.440761 ACTCCCTCTGTTTCTAAATATATGTCT 57.559 33.333 0.00 0.00 0.00 3.41
7358 8584 9.344772 TGTCTTTCTAGAGATTCCACTATAGAC 57.655 37.037 6.78 0.00 39.41 2.59
7359 8585 9.569122 GTCTTTCTAGAGATTCCACTATAGACT 57.431 37.037 6.78 0.00 39.41 3.24
7366 8592 8.862325 AGAGATTCCACTATAGACTACATCTG 57.138 38.462 6.78 0.00 38.49 2.90
7367 8593 7.888021 AGAGATTCCACTATAGACTACATCTGG 59.112 40.741 6.78 1.00 38.49 3.86
7368 8594 7.760607 AGATTCCACTATAGACTACATCTGGA 58.239 38.462 6.78 3.57 38.49 3.86
7369 8595 7.888021 AGATTCCACTATAGACTACATCTGGAG 59.112 40.741 6.78 0.00 38.49 3.86
7370 8596 5.317808 TCCACTATAGACTACATCTGGAGC 58.682 45.833 6.78 0.00 38.49 4.70
7371 8597 5.073428 CCACTATAGACTACATCTGGAGCA 58.927 45.833 6.78 0.00 38.49 4.26
7372 8598 5.536538 CCACTATAGACTACATCTGGAGCAA 59.463 44.000 6.78 0.00 38.49 3.91
7373 8599 6.040955 CCACTATAGACTACATCTGGAGCAAA 59.959 42.308 6.78 0.00 38.49 3.68
7374 8600 7.417911 CCACTATAGACTACATCTGGAGCAAAA 60.418 40.741 6.78 0.00 38.49 2.44
7375 8601 8.147058 CACTATAGACTACATCTGGAGCAAAAT 58.853 37.037 6.78 0.00 38.49 1.82
7376 8602 8.147058 ACTATAGACTACATCTGGAGCAAAATG 58.853 37.037 6.78 0.00 38.49 2.32
7377 8603 5.426689 AGACTACATCTGGAGCAAAATGA 57.573 39.130 0.00 0.00 35.81 2.57
7378 8604 5.426504 AGACTACATCTGGAGCAAAATGAG 58.573 41.667 0.00 0.00 35.81 2.90
7379 8605 5.046014 AGACTACATCTGGAGCAAAATGAGT 60.046 40.000 0.00 0.00 35.81 3.41
7380 8606 4.940046 ACTACATCTGGAGCAAAATGAGTG 59.060 41.667 0.00 0.00 0.00 3.51
7381 8607 4.025040 ACATCTGGAGCAAAATGAGTGA 57.975 40.909 0.00 0.00 0.00 3.41
7382 8608 4.401022 ACATCTGGAGCAAAATGAGTGAA 58.599 39.130 0.00 0.00 0.00 3.18
7383 8609 5.014858 ACATCTGGAGCAAAATGAGTGAAT 58.985 37.500 0.00 0.00 0.00 2.57
7384 8610 5.125097 ACATCTGGAGCAAAATGAGTGAATC 59.875 40.000 0.00 0.00 0.00 2.52
7385 8611 4.914983 TCTGGAGCAAAATGAGTGAATCT 58.085 39.130 0.00 0.00 0.00 2.40
7386 8612 4.698780 TCTGGAGCAAAATGAGTGAATCTG 59.301 41.667 0.00 0.00 0.00 2.90
7387 8613 4.401022 TGGAGCAAAATGAGTGAATCTGT 58.599 39.130 0.00 0.00 0.00 3.41
7388 8614 5.559770 TGGAGCAAAATGAGTGAATCTGTA 58.440 37.500 0.00 0.00 0.00 2.74
7389 8615 5.412594 TGGAGCAAAATGAGTGAATCTGTAC 59.587 40.000 0.00 0.00 0.00 2.90
7390 8616 5.645497 GGAGCAAAATGAGTGAATCTGTACT 59.355 40.000 0.00 0.00 0.00 2.73
7391 8617 6.183360 GGAGCAAAATGAGTGAATCTGTACTC 60.183 42.308 0.00 0.00 42.77 2.59
7392 8618 6.471146 AGCAAAATGAGTGAATCTGTACTCT 58.529 36.000 0.00 0.00 42.86 3.24
7393 8619 7.615403 AGCAAAATGAGTGAATCTGTACTCTA 58.385 34.615 0.00 0.00 42.86 2.43
7394 8620 8.097038 AGCAAAATGAGTGAATCTGTACTCTAA 58.903 33.333 0.00 0.00 42.86 2.10
7395 8621 8.721478 GCAAAATGAGTGAATCTGTACTCTAAA 58.279 33.333 0.00 0.00 42.86 1.85
7399 8625 9.646427 AATGAGTGAATCTGTACTCTAAAAGAC 57.354 33.333 0.00 0.00 42.86 3.01
7400 8626 7.306213 TGAGTGAATCTGTACTCTAAAAGACG 58.694 38.462 0.00 0.00 42.86 4.18
7401 8627 7.040617 TGAGTGAATCTGTACTCTAAAAGACGT 60.041 37.037 0.00 0.00 42.86 4.34
7402 8628 7.306953 AGTGAATCTGTACTCTAAAAGACGTC 58.693 38.462 7.70 7.70 0.00 4.34
7403 8629 7.175293 AGTGAATCTGTACTCTAAAAGACGTCT 59.825 37.037 13.58 13.58 0.00 4.18
7404 8630 8.449397 GTGAATCTGTACTCTAAAAGACGTCTA 58.551 37.037 20.39 1.84 0.00 2.59
7405 8631 9.175312 TGAATCTGTACTCTAAAAGACGTCTAT 57.825 33.333 20.39 13.54 0.00 1.98
7481 8707 5.943349 TTTAGGAACGGATGGAATAGACA 57.057 39.130 0.00 0.00 0.00 3.41
7482 8708 5.943349 TTAGGAACGGATGGAATAGACAA 57.057 39.130 0.00 0.00 0.00 3.18
7483 8709 6.494666 TTAGGAACGGATGGAATAGACAAT 57.505 37.500 0.00 0.00 0.00 2.71
7484 8710 7.606135 TTAGGAACGGATGGAATAGACAATA 57.394 36.000 0.00 0.00 0.00 1.90
7485 8711 6.688073 AGGAACGGATGGAATAGACAATAT 57.312 37.500 0.00 0.00 0.00 1.28
7486 8712 6.702329 AGGAACGGATGGAATAGACAATATC 58.298 40.000 0.00 0.00 0.00 1.63
7487 8713 6.498651 AGGAACGGATGGAATAGACAATATCT 59.501 38.462 0.00 0.00 41.95 1.98
7488 8714 6.591834 GGAACGGATGGAATAGACAATATCTG 59.408 42.308 0.00 0.00 38.49 2.90
7501 8727 1.939974 ATATCTGCGCATTGTCGTGT 58.060 45.000 12.24 0.00 0.00 4.49
7503 8729 1.638388 ATCTGCGCATTGTCGTGTGG 61.638 55.000 12.24 0.00 0.00 4.17
7521 8747 5.977725 CGTGTGGTAATGGATAGAGTACAAG 59.022 44.000 0.00 0.00 0.00 3.16
7541 8767 4.942761 AGACATGTTCTGGTTTTTGCAT 57.057 36.364 0.00 0.00 31.12 3.96
7549 8775 6.815089 TGTTCTGGTTTTTGCATACAGAAAT 58.185 32.000 15.73 0.00 46.11 2.17
7554 8780 9.995003 TCTGGTTTTTGCATACAGAAATTAATT 57.005 25.926 0.00 0.00 35.45 1.40
7606 8832 5.049818 GCACCTGTGAGATGCTATATGAAAC 60.050 44.000 0.51 0.00 30.06 2.78
7618 8844 9.418045 GATGCTATATGAAACCTAGAGTTCTTC 57.582 37.037 0.00 0.00 37.88 2.87
7619 8845 8.306313 TGCTATATGAAACCTAGAGTTCTTCA 57.694 34.615 0.00 0.00 37.88 3.02
7657 8883 0.322098 TCGATCGGGTGGTGCATTTT 60.322 50.000 16.41 0.00 0.00 1.82
7666 8892 3.146066 GGTGGTGCATTTTGAGTACTCA 58.854 45.455 21.74 21.74 37.91 3.41
7667 8893 3.189287 GGTGGTGCATTTTGAGTACTCAG 59.811 47.826 23.97 14.43 41.13 3.35
7668 8894 3.815401 GTGGTGCATTTTGAGTACTCAGT 59.185 43.478 23.97 12.61 41.13 3.41
7669 8895 4.065088 TGGTGCATTTTGAGTACTCAGTC 58.935 43.478 23.97 13.31 41.13 3.51
7670 8896 4.202357 TGGTGCATTTTGAGTACTCAGTCT 60.202 41.667 23.97 10.80 41.13 3.24
7671 8897 4.757149 GGTGCATTTTGAGTACTCAGTCTT 59.243 41.667 23.97 9.30 41.13 3.01
7672 8898 5.334414 GGTGCATTTTGAGTACTCAGTCTTG 60.334 44.000 23.97 19.56 41.13 3.02
7673 8899 5.466728 GTGCATTTTGAGTACTCAGTCTTGA 59.533 40.000 23.97 7.11 41.13 3.02
7682 8908 2.557920 CTCAGTCTTGAGCTTTGGGT 57.442 50.000 0.00 0.00 43.98 4.51
7683 8909 2.149578 CTCAGTCTTGAGCTTTGGGTG 58.850 52.381 0.00 0.00 43.98 4.61
7684 8910 1.768275 TCAGTCTTGAGCTTTGGGTGA 59.232 47.619 0.00 0.00 0.00 4.02
7685 8911 2.172505 TCAGTCTTGAGCTTTGGGTGAA 59.827 45.455 0.00 0.00 0.00 3.18
7686 8912 2.951642 CAGTCTTGAGCTTTGGGTGAAA 59.048 45.455 0.00 0.00 0.00 2.69
7687 8913 3.381272 CAGTCTTGAGCTTTGGGTGAAAA 59.619 43.478 0.00 0.00 0.00 2.29
7688 8914 3.381590 AGTCTTGAGCTTTGGGTGAAAAC 59.618 43.478 0.00 0.00 0.00 2.43
7689 8915 2.693074 TCTTGAGCTTTGGGTGAAAACC 59.307 45.455 0.00 0.00 0.00 3.27
7698 8924 2.491675 GGGTGAAAACCCTAGGTCTG 57.508 55.000 8.29 0.00 46.39 3.51
7699 8925 1.004394 GGGTGAAAACCCTAGGTCTGG 59.996 57.143 8.29 0.00 46.39 3.86
7700 8926 1.613520 GGTGAAAACCCTAGGTCTGGC 60.614 57.143 8.29 0.00 33.12 4.85
7701 8927 0.696501 TGAAAACCCTAGGTCTGGCC 59.303 55.000 8.29 0.00 33.12 5.36
7710 8936 2.990479 GGTCTGGCCTACCTGGTG 59.010 66.667 17.78 0.00 38.35 4.17
7711 8937 1.612442 GGTCTGGCCTACCTGGTGA 60.612 63.158 17.78 0.00 38.35 4.02
7712 8938 1.198759 GGTCTGGCCTACCTGGTGAA 61.199 60.000 17.78 0.00 38.35 3.18
7713 8939 0.250513 GTCTGGCCTACCTGGTGAAG 59.749 60.000 10.23 0.00 38.35 3.02
7722 8948 2.187073 CCTGGTGAAGGCATTGAGC 58.813 57.895 0.00 0.00 39.93 4.26
7745 8971 3.942115 GGGGTTTGCTTAGACTTGATCTC 59.058 47.826 0.00 0.00 39.04 2.75
7746 8972 3.942115 GGGTTTGCTTAGACTTGATCTCC 59.058 47.826 0.00 0.00 39.04 3.71
7752 8978 3.181470 GCTTAGACTTGATCTCCAGGGTC 60.181 52.174 0.00 0.00 39.04 4.46
7753 8979 2.630889 AGACTTGATCTCCAGGGTCA 57.369 50.000 0.00 0.00 34.26 4.02
7756 8982 3.652869 AGACTTGATCTCCAGGGTCAAAA 59.347 43.478 0.00 0.00 34.26 2.44
7769 8995 4.339247 CAGGGTCAAAATCCATGGTATGAC 59.661 45.833 22.32 22.32 37.14 3.06
7789 9015 0.463833 CTTTGGGTGTAGGATCCGGC 60.464 60.000 5.98 3.78 0.00 6.13
7791 9017 2.836360 GGGTGTAGGATCCGGCGA 60.836 66.667 9.30 0.00 0.00 5.54
7793 9019 2.420568 GGTGTAGGATCCGGCGACA 61.421 63.158 9.30 6.91 0.00 4.35
7794 9020 1.514087 GTGTAGGATCCGGCGACAA 59.486 57.895 9.30 0.00 0.00 3.18
7805 9031 2.562912 GCGACAATGCCACTGGTG 59.437 61.111 0.00 0.00 0.00 4.17
7809 9035 0.593128 GACAATGCCACTGGTGTGTC 59.407 55.000 10.38 10.38 42.34 3.67
7810 9036 0.823356 ACAATGCCACTGGTGTGTCC 60.823 55.000 0.00 0.00 42.34 4.02
7811 9037 1.228552 AATGCCACTGGTGTGTCCC 60.229 57.895 0.00 0.00 42.34 4.46
7817 9047 1.697432 CCACTGGTGTGTCCCTTCTTA 59.303 52.381 0.00 0.00 42.34 2.10
7826 9056 3.323979 TGTGTCCCTTCTTAGAGGTGTTC 59.676 47.826 0.00 0.00 34.88 3.18
7843 9073 3.020984 TGTTCCTTTTGAAGAACCGCTT 58.979 40.909 0.00 0.00 40.25 4.68
7845 9075 4.081917 TGTTCCTTTTGAAGAACCGCTTTT 60.082 37.500 0.00 0.00 36.83 2.27
7846 9076 5.125739 TGTTCCTTTTGAAGAACCGCTTTTA 59.874 36.000 0.00 0.00 36.83 1.52
7851 9081 8.241367 TCCTTTTGAAGAACCGCTTTTATAATC 58.759 33.333 0.00 0.00 36.83 1.75
7852 9082 7.488150 CCTTTTGAAGAACCGCTTTTATAATCC 59.512 37.037 0.00 0.00 36.83 3.01
7860 9090 5.177326 ACCGCTTTTATAATCCGTGTGTTA 58.823 37.500 0.00 0.00 0.00 2.41
7877 9107 6.419116 CGTGTGTTATCATGAGATAGTTGGAG 59.581 42.308 0.09 0.00 37.97 3.86
7879 9109 6.098838 TGTGTTATCATGAGATAGTTGGAGCT 59.901 38.462 0.09 0.00 37.97 4.09
7912 9142 6.588348 TGATGTACATCTTTAATCGCTGTG 57.412 37.500 30.67 0.00 38.60 3.66
7916 9146 7.197071 TGTACATCTTTAATCGCTGTGTTTT 57.803 32.000 0.00 0.00 0.00 2.43
7943 9194 2.103263 CTCTCCGCCTAGGCATAGTTTT 59.897 50.000 32.47 0.00 42.06 2.43
7958 9209 7.048512 GGCATAGTTTTGGTCTAGTATGACTT 58.951 38.462 0.00 0.00 34.32 3.01
7976 9227 0.538057 TTGGCTCTTTGCTGGTGAGG 60.538 55.000 0.00 0.00 42.39 3.86
7978 9229 1.303155 GCTCTTTGCTGGTGAGGCT 60.303 57.895 0.00 0.00 38.95 4.58
7979 9230 1.584380 GCTCTTTGCTGGTGAGGCTG 61.584 60.000 0.00 0.00 38.95 4.85
7985 9236 0.472044 TGCTGGTGAGGCTGTTTGTA 59.528 50.000 0.00 0.00 0.00 2.41
7990 9241 2.158682 TGGTGAGGCTGTTTGTATGTGT 60.159 45.455 0.00 0.00 0.00 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.018324 TGGGTCTAGAGGCGATATAGTGAT 60.018 45.833 0.00 0.00 0.00 3.06
6 7 1.535833 CGTGGGTCTAGAGGCGATAT 58.464 55.000 0.00 0.00 0.00 1.63
16 17 0.249676 TTATTTGCGCCGTGGGTCTA 59.750 50.000 4.18 0.00 0.00 2.59
188 189 8.832521 TGGACGTACAAATACAATCAATTATCC 58.167 33.333 0.00 0.00 0.00 2.59
189 190 9.646336 GTGGACGTACAAATACAATCAATTATC 57.354 33.333 0.00 0.00 0.00 1.75
220 221 5.848921 AGGATGAGAGCACCTAATATTTCCT 59.151 40.000 0.00 0.00 31.78 3.36
229 230 1.273838 ACCCAAGGATGAGAGCACCTA 60.274 52.381 0.00 0.00 33.34 3.08
330 334 5.581085 CCTGGAATTTTAGGAGTTGTAGTCG 59.419 44.000 3.49 0.00 36.11 4.18
427 432 8.077991 CAGATGTGAATAGTGTCAAATGTTGTT 58.922 33.333 0.00 0.00 0.00 2.83
465 470 8.955061 AATCAAAATGTACATCGAGAAACAAG 57.045 30.769 9.23 0.00 0.00 3.16
620 629 3.197983 AGTGGTGGAGGGGAAATATCAA 58.802 45.455 0.00 0.00 0.00 2.57
1179 1206 2.200067 CTAGGAAGTTGCAGATGCTCG 58.800 52.381 6.35 0.00 42.66 5.03
1216 1243 4.839668 AAAGAGATAAGGTCGAGATCGG 57.160 45.455 1.91 0.00 40.29 4.18
1247 1274 3.809279 ACCGTAACAAGGTAAGAAAACCG 59.191 43.478 0.00 0.00 44.77 4.44
1303 1330 0.036010 CTCACAACCATCCCGCTTCT 60.036 55.000 0.00 0.00 0.00 2.85
1539 1569 5.147330 TCTGTCAACCTGATACACGATTT 57.853 39.130 0.00 0.00 0.00 2.17
1736 1767 7.112452 AGGCATTTCCCTCATTATTTACAAC 57.888 36.000 0.00 0.00 34.51 3.32
2096 2134 5.095490 GTCAATAATGGCTGTGCAAACTAC 58.905 41.667 0.00 0.00 0.00 2.73
2516 2562 1.098050 CAGGCCTGTAAACATCTGCC 58.902 55.000 25.53 9.29 36.06 4.85
2555 2601 4.758165 ACGTGTACCTTTTTACCCAGAATG 59.242 41.667 0.00 0.00 0.00 2.67
2711 2770 8.356657 CCAACCTATCAACATTCAAAAGTAACA 58.643 33.333 0.00 0.00 0.00 2.41
2869 2939 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
2870 2940 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
2871 2941 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2872 2942 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2873 2943 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2874 2944 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2875 2945 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2917 2987 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2918 2988 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2919 2989 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2920 2990 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2921 2991 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2922 2992 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2923 2993 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2924 2994 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2925 2995 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2928 2998 9.812347 TGATACTCCCTCCGTAAACTAATATAA 57.188 33.333 0.00 0.00 0.00 0.98
2929 2999 9.986157 ATGATACTCCCTCCGTAAACTAATATA 57.014 33.333 0.00 0.00 0.00 0.86
2930 3000 8.896722 ATGATACTCCCTCCGTAAACTAATAT 57.103 34.615 0.00 0.00 0.00 1.28
2931 3001 8.168725 AGATGATACTCCCTCCGTAAACTAATA 58.831 37.037 0.00 0.00 0.00 0.98
2932 3002 7.011382 AGATGATACTCCCTCCGTAAACTAAT 58.989 38.462 0.00 0.00 0.00 1.73
2933 3003 6.371278 AGATGATACTCCCTCCGTAAACTAA 58.629 40.000 0.00 0.00 0.00 2.24
2934 3004 5.950023 AGATGATACTCCCTCCGTAAACTA 58.050 41.667 0.00 0.00 0.00 2.24
2935 3005 4.805744 AGATGATACTCCCTCCGTAAACT 58.194 43.478 0.00 0.00 0.00 2.66
2936 3006 6.645790 TTAGATGATACTCCCTCCGTAAAC 57.354 41.667 0.00 0.00 0.00 2.01
2937 3007 7.850935 AATTAGATGATACTCCCTCCGTAAA 57.149 36.000 0.00 0.00 0.00 2.01
2938 3008 8.967918 CATAATTAGATGATACTCCCTCCGTAA 58.032 37.037 0.00 0.00 0.00 3.18
2939 3009 8.114102 ACATAATTAGATGATACTCCCTCCGTA 58.886 37.037 0.00 0.00 0.00 4.02
2940 3010 6.954684 ACATAATTAGATGATACTCCCTCCGT 59.045 38.462 0.00 0.00 0.00 4.69
2941 3011 7.411486 ACATAATTAGATGATACTCCCTCCG 57.589 40.000 0.00 0.00 0.00 4.63
2942 3012 8.261522 GGAACATAATTAGATGATACTCCCTCC 58.738 40.741 0.00 0.00 0.00 4.30
2943 3013 9.041354 AGGAACATAATTAGATGATACTCCCTC 57.959 37.037 0.00 0.00 0.00 4.30
2944 3014 8.980832 AGGAACATAATTAGATGATACTCCCT 57.019 34.615 0.00 0.00 0.00 4.20
2945 3015 7.976734 CGAGGAACATAATTAGATGATACTCCC 59.023 40.741 5.54 0.00 36.62 4.30
2946 3016 7.976734 CCGAGGAACATAATTAGATGATACTCC 59.023 40.741 5.54 2.36 36.62 3.85
2947 3017 8.524487 ACCGAGGAACATAATTAGATGATACTC 58.476 37.037 0.00 2.12 36.62 2.59
2948 3018 8.423906 ACCGAGGAACATAATTAGATGATACT 57.576 34.615 0.00 0.00 0.00 2.12
2949 3019 9.490379 AAACCGAGGAACATAATTAGATGATAC 57.510 33.333 0.00 0.00 0.00 2.24
2950 3020 9.489084 CAAACCGAGGAACATAATTAGATGATA 57.511 33.333 0.00 0.00 0.00 2.15
2951 3021 7.041098 GCAAACCGAGGAACATAATTAGATGAT 60.041 37.037 0.00 0.00 0.00 2.45
3651 3986 1.392710 TAGAGTAGCTTCCCGCAGCC 61.393 60.000 0.00 0.00 41.12 4.85
3802 4173 1.831106 TGCCCAAGATCTGTGTACGAT 59.169 47.619 0.00 0.00 0.00 3.73
4101 4472 5.248477 AGACACACTAGCTCCTCCATTTAAA 59.752 40.000 0.00 0.00 0.00 1.52
4110 4481 3.235200 ACAGAAAGACACACTAGCTCCT 58.765 45.455 0.00 0.00 0.00 3.69
4151 4522 4.730949 TTAGCTAGTATCGGTTGTGCTT 57.269 40.909 0.00 0.00 0.00 3.91
4400 4775 7.696755 AGTCAAAGTTGAAAATGCAAATTTCC 58.303 30.769 19.67 9.72 42.11 3.13
4513 4986 5.067273 ACGAAGACAATTGGACCAAACATA 58.933 37.500 11.82 0.00 0.00 2.29
4626 5116 2.034432 CAGTGCGACTCTAGCAGATGAT 59.966 50.000 0.00 0.00 46.10 2.45
4642 5132 2.484264 CAGCAAGGGTAAGTAACAGTGC 59.516 50.000 0.00 0.00 33.28 4.40
5000 5546 7.634671 AAAATAAACTTATGTAACCCCTCCG 57.365 36.000 0.00 0.00 0.00 4.63
5109 6018 9.567848 ACTGAACATTTATTATTTAACCTTGCG 57.432 29.630 0.00 0.00 0.00 4.85
5504 6509 8.285776 AGAAATCATTGAAGTTAAACTTTGCG 57.714 30.769 0.00 0.00 38.80 4.85
5555 6560 2.642139 TACGACTGAACGAACCCATC 57.358 50.000 0.00 0.00 37.03 3.51
5780 6785 9.513906 TTGATCATTGACTCCATAAACTTAACA 57.486 29.630 0.00 0.00 0.00 2.41
5862 6867 3.803778 GTGTTTGGAAAGAACATGCAAGG 59.196 43.478 0.00 0.00 39.03 3.61
5926 6931 6.041523 ACACAACCAATTAAAGGCTTACACAT 59.958 34.615 0.00 0.00 0.00 3.21
5927 6932 5.361285 ACACAACCAATTAAAGGCTTACACA 59.639 36.000 0.00 0.00 0.00 3.72
5928 6933 5.689961 CACACAACCAATTAAAGGCTTACAC 59.310 40.000 0.00 0.00 0.00 2.90
5929 6934 5.737635 GCACACAACCAATTAAAGGCTTACA 60.738 40.000 0.00 0.00 0.00 2.41
5930 6935 4.684242 GCACACAACCAATTAAAGGCTTAC 59.316 41.667 0.00 0.00 0.00 2.34
5931 6936 4.342378 TGCACACAACCAATTAAAGGCTTA 59.658 37.500 0.00 0.00 0.00 3.09
5932 6937 3.133721 TGCACACAACCAATTAAAGGCTT 59.866 39.130 0.00 0.00 0.00 4.35
5933 6938 2.697751 TGCACACAACCAATTAAAGGCT 59.302 40.909 0.00 0.00 0.00 4.58
5934 6939 3.104843 TGCACACAACCAATTAAAGGC 57.895 42.857 0.00 0.00 0.00 4.35
5935 6940 3.919804 CGATGCACACAACCAATTAAAGG 59.080 43.478 0.00 0.00 0.00 3.11
5936 6941 3.364621 GCGATGCACACAACCAATTAAAG 59.635 43.478 0.00 0.00 0.00 1.85
5937 6942 3.005261 AGCGATGCACACAACCAATTAAA 59.995 39.130 0.00 0.00 0.00 1.52
5938 6943 2.556189 AGCGATGCACACAACCAATTAA 59.444 40.909 0.00 0.00 0.00 1.40
5939 6944 2.158559 AGCGATGCACACAACCAATTA 58.841 42.857 0.00 0.00 0.00 1.40
5940 6945 0.961019 AGCGATGCACACAACCAATT 59.039 45.000 0.00 0.00 0.00 2.32
5941 6946 0.961019 AAGCGATGCACACAACCAAT 59.039 45.000 0.00 0.00 0.00 3.16
5942 6947 0.030504 CAAGCGATGCACACAACCAA 59.969 50.000 0.00 0.00 0.00 3.67
5943 6948 0.817229 TCAAGCGATGCACACAACCA 60.817 50.000 0.00 0.00 0.00 3.67
5944 6949 0.523072 ATCAAGCGATGCACACAACC 59.477 50.000 0.00 0.00 0.00 3.77
5945 6950 1.609932 CATCAAGCGATGCACACAAC 58.390 50.000 0.00 0.00 42.54 3.32
5957 6962 3.207669 CCGGCCTCTGCATCAAGC 61.208 66.667 0.00 0.00 45.96 4.01
5958 6963 2.515523 CCCGGCCTCTGCATCAAG 60.516 66.667 0.00 0.00 40.13 3.02
5959 6964 4.113815 CCCCGGCCTCTGCATCAA 62.114 66.667 0.00 0.00 40.13 2.57
5962 6967 4.815973 TACCCCCGGCCTCTGCAT 62.816 66.667 0.00 0.00 40.13 3.96
5964 6969 3.477578 GATTACCCCCGGCCTCTGC 62.478 68.421 0.00 0.00 0.00 4.26
5965 6970 2.819284 GGATTACCCCCGGCCTCTG 61.819 68.421 0.00 0.00 0.00 3.35
5966 6971 2.447959 GGATTACCCCCGGCCTCT 60.448 66.667 0.00 0.00 0.00 3.69
5967 6972 2.447959 AGGATTACCCCCGGCCTC 60.448 66.667 0.00 0.00 36.73 4.70
5968 6973 2.447959 GAGGATTACCCCCGGCCT 60.448 66.667 0.00 0.00 36.73 5.19
5969 6974 3.567209 GGAGGATTACCCCCGGCC 61.567 72.222 0.00 0.00 36.73 6.13
5970 6975 1.642513 AAAGGAGGATTACCCCCGGC 61.643 60.000 0.00 0.00 36.73 6.13
5971 6976 0.924090 AAAAGGAGGATTACCCCCGG 59.076 55.000 0.00 0.00 36.73 5.73
5972 6977 2.375146 CAAAAAGGAGGATTACCCCCG 58.625 52.381 0.00 0.00 36.73 5.73
5973 6978 2.108168 GCAAAAAGGAGGATTACCCCC 58.892 52.381 0.00 0.00 36.73 5.40
5974 6979 2.815158 TGCAAAAAGGAGGATTACCCC 58.185 47.619 0.00 0.00 36.73 4.95
5975 6980 4.882842 TTTGCAAAAAGGAGGATTACCC 57.117 40.909 10.02 0.00 36.73 3.69
5998 7003 9.638239 CAACCTGTTATTAAATGCTTACACATT 57.362 29.630 0.00 0.00 42.01 2.71
6009 7014 9.492730 AGAATTGATCCCAACCTGTTATTAAAT 57.507 29.630 0.00 0.00 34.72 1.40
6050 7062 5.408604 CGAACTACTGGCAAACTACTGAATT 59.591 40.000 0.00 0.00 0.00 2.17
6107 7124 1.736681 GCCAATGAGCTTCAGTCTGTC 59.263 52.381 0.00 0.00 0.00 3.51
6109 7126 1.817357 TGCCAATGAGCTTCAGTCTG 58.183 50.000 0.00 0.00 0.00 3.51
6119 7136 7.148540 CCAAACAAATAGTTGATTGCCAATGAG 60.149 37.037 17.37 2.25 42.91 2.90
6126 7143 5.757808 ACCAACCAAACAAATAGTTGATTGC 59.242 36.000 17.37 0.00 42.91 3.56
6138 7155 3.766591 ACATCAGAACACCAACCAAACAA 59.233 39.130 0.00 0.00 0.00 2.83
6239 7256 7.537715 TGAAACGCATAGACATTTCATGAAAT 58.462 30.769 24.83 24.83 41.33 2.17
6272 7289 4.087182 TGATTCCCTCGTCAGACTAGTTT 58.913 43.478 0.00 0.00 0.00 2.66
6273 7290 3.698289 TGATTCCCTCGTCAGACTAGTT 58.302 45.455 0.00 0.00 0.00 2.24
6274 7291 3.367646 TGATTCCCTCGTCAGACTAGT 57.632 47.619 0.00 0.00 0.00 2.57
6275 7292 4.339530 TGAATGATTCCCTCGTCAGACTAG 59.660 45.833 2.26 0.00 0.00 2.57
6322 7426 1.450531 GATGGCGGCCCTCAATTCTG 61.451 60.000 17.97 0.00 0.00 3.02
6328 7432 0.257328 TATTTTGATGGCGGCCCTCA 59.743 50.000 21.07 21.07 0.00 3.86
6405 7510 2.833631 AGGACTGGTACGTCTTTTGG 57.166 50.000 0.00 0.00 33.71 3.28
6406 7511 6.796705 AAATTAGGACTGGTACGTCTTTTG 57.203 37.500 0.00 0.00 33.71 2.44
6434 7542 4.380841 ACACTCCGTCGAAATTATGCTA 57.619 40.909 0.00 0.00 0.00 3.49
6565 7673 1.597742 GCTGTTCTGTCTTTCCAGCA 58.402 50.000 5.16 0.00 45.94 4.41
6910 8136 0.179073 CTGCGCTTACCAGTAGCCAT 60.179 55.000 9.73 0.00 0.00 4.40
6963 8189 1.226603 GTAACCGCGCATCGAGTCT 60.227 57.895 8.75 0.00 41.67 3.24
7011 8237 2.047061 ACTGGGTTCAACTAGCAGTGA 58.953 47.619 0.00 0.00 0.00 3.41
7018 8244 2.596346 TGTCCGTACTGGGTTCAACTA 58.404 47.619 4.30 0.00 38.76 2.24
7068 8294 6.432936 CCGTATACACGTATGTTGTCACTAT 58.567 40.000 3.32 0.00 46.96 2.12
7113 8339 9.237187 TCATTGGAACTTACACAGCAAATATAA 57.763 29.630 0.00 0.00 0.00 0.98
7190 8416 4.934797 AATCATCAAGACTGAAGGGGAA 57.065 40.909 0.00 0.00 34.49 3.97
7191 8417 5.667172 TGATAATCATCAAGACTGAAGGGGA 59.333 40.000 0.00 0.00 38.25 4.81
7199 8425 9.327628 CTGTTCTCAATGATAATCATCAAGACT 57.672 33.333 0.00 0.00 44.27 3.24
7216 8442 4.464951 TCCGGTTAGCTATTCTGTTCTCAA 59.535 41.667 0.00 0.00 0.00 3.02
7271 8497 3.187637 GGCTACACAATAAAGCAACGACA 59.812 43.478 0.00 0.00 38.01 4.35
7274 8500 2.486203 TGGGCTACACAATAAAGCAACG 59.514 45.455 0.00 0.00 38.01 4.10
7292 8518 4.393990 GGGAGTAGTTACAAATCGTTTGGG 59.606 45.833 12.79 0.00 44.81 4.12
7298 8524 5.326200 ACAGAGGGAGTAGTTACAAATCG 57.674 43.478 0.00 0.00 0.00 3.34
7299 8525 7.387643 AGAAACAGAGGGAGTAGTTACAAATC 58.612 38.462 0.00 0.00 0.00 2.17
7300 8526 7.317722 AGAAACAGAGGGAGTAGTTACAAAT 57.682 36.000 0.00 0.00 0.00 2.32
7301 8527 6.742559 AGAAACAGAGGGAGTAGTTACAAA 57.257 37.500 0.00 0.00 0.00 2.83
7302 8528 7.844493 TTAGAAACAGAGGGAGTAGTTACAA 57.156 36.000 0.00 0.00 0.00 2.41
7303 8529 7.844493 TTTAGAAACAGAGGGAGTAGTTACA 57.156 36.000 0.00 0.00 0.00 2.41
7310 8536 9.440761 AGACATATATTTAGAAACAGAGGGAGT 57.559 33.333 0.00 0.00 0.00 3.85
7332 8558 9.344772 GTCTATAGTGGAATCTCTAGAAAGACA 57.655 37.037 0.00 0.00 33.39 3.41
7333 8559 9.569122 AGTCTATAGTGGAATCTCTAGAAAGAC 57.431 37.037 0.00 0.00 33.37 3.01
7340 8566 9.952030 CAGATGTAGTCTATAGTGGAATCTCTA 57.048 37.037 0.00 0.00 34.69 2.43
7341 8567 7.888021 CCAGATGTAGTCTATAGTGGAATCTCT 59.112 40.741 0.00 0.00 34.69 3.10
7342 8568 7.885922 TCCAGATGTAGTCTATAGTGGAATCTC 59.114 40.741 7.62 0.00 34.69 2.75
7343 8569 7.760607 TCCAGATGTAGTCTATAGTGGAATCT 58.239 38.462 7.62 1.63 34.69 2.40
7344 8570 7.362574 GCTCCAGATGTAGTCTATAGTGGAATC 60.363 44.444 10.15 0.00 34.69 2.52
7345 8571 6.435904 GCTCCAGATGTAGTCTATAGTGGAAT 59.564 42.308 10.15 0.00 34.69 3.01
7346 8572 5.770663 GCTCCAGATGTAGTCTATAGTGGAA 59.229 44.000 10.15 0.00 34.69 3.53
7347 8573 5.163088 TGCTCCAGATGTAGTCTATAGTGGA 60.163 44.000 0.00 9.09 34.69 4.02
7348 8574 5.073428 TGCTCCAGATGTAGTCTATAGTGG 58.927 45.833 0.00 0.00 34.69 4.00
7349 8575 6.641169 TTGCTCCAGATGTAGTCTATAGTG 57.359 41.667 0.00 0.00 34.69 2.74
7350 8576 7.661536 TTTTGCTCCAGATGTAGTCTATAGT 57.338 36.000 0.00 0.00 34.69 2.12
7351 8577 8.363390 TCATTTTGCTCCAGATGTAGTCTATAG 58.637 37.037 0.00 0.00 34.69 1.31
7352 8578 8.250143 TCATTTTGCTCCAGATGTAGTCTATA 57.750 34.615 0.00 0.00 34.69 1.31
7353 8579 7.129457 TCATTTTGCTCCAGATGTAGTCTAT 57.871 36.000 0.00 0.00 34.69 1.98
7354 8580 6.155221 ACTCATTTTGCTCCAGATGTAGTCTA 59.845 38.462 0.00 0.00 34.69 2.59
7355 8581 5.046014 ACTCATTTTGCTCCAGATGTAGTCT 60.046 40.000 0.00 0.00 37.80 3.24
7356 8582 5.064452 CACTCATTTTGCTCCAGATGTAGTC 59.936 44.000 0.00 0.00 0.00 2.59
7357 8583 4.940046 CACTCATTTTGCTCCAGATGTAGT 59.060 41.667 0.00 0.00 0.00 2.73
7358 8584 5.181009 TCACTCATTTTGCTCCAGATGTAG 58.819 41.667 0.00 0.00 0.00 2.74
7359 8585 5.164620 TCACTCATTTTGCTCCAGATGTA 57.835 39.130 0.00 0.00 0.00 2.29
7360 8586 4.025040 TCACTCATTTTGCTCCAGATGT 57.975 40.909 0.00 0.00 0.00 3.06
7361 8587 5.357314 AGATTCACTCATTTTGCTCCAGATG 59.643 40.000 0.00 0.00 0.00 2.90
7362 8588 5.357314 CAGATTCACTCATTTTGCTCCAGAT 59.643 40.000 0.00 0.00 0.00 2.90
7363 8589 4.698780 CAGATTCACTCATTTTGCTCCAGA 59.301 41.667 0.00 0.00 0.00 3.86
7364 8590 4.458295 ACAGATTCACTCATTTTGCTCCAG 59.542 41.667 0.00 0.00 0.00 3.86
7365 8591 4.401022 ACAGATTCACTCATTTTGCTCCA 58.599 39.130 0.00 0.00 0.00 3.86
7366 8592 5.645497 AGTACAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 0.00 4.70
7367 8593 6.593382 AGAGTACAGATTCACTCATTTTGCTC 59.407 38.462 0.00 0.00 42.99 4.26
7368 8594 6.471146 AGAGTACAGATTCACTCATTTTGCT 58.529 36.000 0.00 0.00 42.99 3.91
7369 8595 6.734104 AGAGTACAGATTCACTCATTTTGC 57.266 37.500 0.00 0.00 42.99 3.68
7373 8599 9.646427 GTCTTTTAGAGTACAGATTCACTCATT 57.354 33.333 0.00 0.00 42.99 2.57
7374 8600 7.971168 CGTCTTTTAGAGTACAGATTCACTCAT 59.029 37.037 0.00 0.00 42.99 2.90
7375 8601 7.040617 ACGTCTTTTAGAGTACAGATTCACTCA 60.041 37.037 0.00 0.00 42.99 3.41
7376 8602 7.306953 ACGTCTTTTAGAGTACAGATTCACTC 58.693 38.462 0.00 0.00 41.25 3.51
7377 8603 7.175293 AGACGTCTTTTAGAGTACAGATTCACT 59.825 37.037 13.58 0.00 0.00 3.41
7378 8604 7.306953 AGACGTCTTTTAGAGTACAGATTCAC 58.693 38.462 13.58 0.00 0.00 3.18
7379 8605 7.450124 AGACGTCTTTTAGAGTACAGATTCA 57.550 36.000 13.58 0.00 0.00 2.57
7455 8681 9.316594 TGTCTATTCCATCCGTTCCTAAATATA 57.683 33.333 0.00 0.00 0.00 0.86
7456 8682 8.202461 TGTCTATTCCATCCGTTCCTAAATAT 57.798 34.615 0.00 0.00 0.00 1.28
7457 8683 7.606135 TGTCTATTCCATCCGTTCCTAAATA 57.394 36.000 0.00 0.00 0.00 1.40
7458 8684 6.494666 TGTCTATTCCATCCGTTCCTAAAT 57.505 37.500 0.00 0.00 0.00 1.40
7459 8685 5.943349 TGTCTATTCCATCCGTTCCTAAA 57.057 39.130 0.00 0.00 0.00 1.85
7460 8686 5.943349 TTGTCTATTCCATCCGTTCCTAA 57.057 39.130 0.00 0.00 0.00 2.69
7461 8687 7.674348 AGATATTGTCTATTCCATCCGTTCCTA 59.326 37.037 0.00 0.00 34.69 2.94
7462 8688 6.498651 AGATATTGTCTATTCCATCCGTTCCT 59.501 38.462 0.00 0.00 34.69 3.36
7463 8689 6.591834 CAGATATTGTCTATTCCATCCGTTCC 59.408 42.308 0.00 0.00 34.69 3.62
7464 8690 6.091441 GCAGATATTGTCTATTCCATCCGTTC 59.909 42.308 0.00 0.00 34.69 3.95
7465 8691 5.934625 GCAGATATTGTCTATTCCATCCGTT 59.065 40.000 0.00 0.00 34.69 4.44
7466 8692 5.482908 GCAGATATTGTCTATTCCATCCGT 58.517 41.667 0.00 0.00 34.69 4.69
7467 8693 4.564372 CGCAGATATTGTCTATTCCATCCG 59.436 45.833 0.00 0.00 34.69 4.18
7468 8694 4.331168 GCGCAGATATTGTCTATTCCATCC 59.669 45.833 0.30 0.00 34.69 3.51
7469 8695 4.931601 TGCGCAGATATTGTCTATTCCATC 59.068 41.667 5.66 0.00 34.69 3.51
7470 8696 4.898320 TGCGCAGATATTGTCTATTCCAT 58.102 39.130 5.66 0.00 34.69 3.41
7471 8697 4.335400 TGCGCAGATATTGTCTATTCCA 57.665 40.909 5.66 0.00 34.69 3.53
7472 8698 5.180117 ACAATGCGCAGATATTGTCTATTCC 59.820 40.000 18.73 0.00 40.82 3.01
7473 8699 6.233430 ACAATGCGCAGATATTGTCTATTC 57.767 37.500 18.73 0.00 40.82 1.75
7479 8705 2.030823 CACGACAATGCGCAGATATTGT 59.969 45.455 23.11 23.11 44.91 2.71
7480 8706 2.030823 ACACGACAATGCGCAGATATTG 59.969 45.455 18.32 17.85 38.78 1.90
7481 8707 2.030823 CACACGACAATGCGCAGATATT 59.969 45.455 18.32 1.22 33.86 1.28
7482 8708 1.594397 CACACGACAATGCGCAGATAT 59.406 47.619 18.32 0.14 33.86 1.63
7483 8709 0.998669 CACACGACAATGCGCAGATA 59.001 50.000 18.32 0.00 33.86 1.98
7484 8710 1.638388 CCACACGACAATGCGCAGAT 61.638 55.000 18.32 4.05 33.86 2.90
7485 8711 2.316867 CCACACGACAATGCGCAGA 61.317 57.895 18.32 0.00 33.86 4.26
7486 8712 1.288419 TACCACACGACAATGCGCAG 61.288 55.000 18.32 5.51 33.86 5.18
7487 8713 0.880718 TTACCACACGACAATGCGCA 60.881 50.000 14.96 14.96 33.86 6.09
7488 8714 0.446222 ATTACCACACGACAATGCGC 59.554 50.000 0.00 0.00 33.86 6.09
7501 8727 7.344612 ACATGTCTTGTACTCTATCCATTACCA 59.655 37.037 0.00 0.00 36.57 3.25
7503 8729 9.250624 GAACATGTCTTGTACTCTATCCATTAC 57.749 37.037 0.00 0.00 37.68 1.89
7521 8747 5.527951 TGTATGCAAAAACCAGAACATGTC 58.472 37.500 0.00 0.00 0.00 3.06
7549 8775 9.096160 CCATGCATGCTATTGTTGTTTAATTAA 57.904 29.630 21.69 0.00 0.00 1.40
7554 8780 5.911378 TCCATGCATGCTATTGTTGTTTA 57.089 34.783 21.69 0.00 0.00 2.01
7589 8815 8.484214 AACTCTAGGTTTCATATAGCATCTCA 57.516 34.615 0.00 0.00 33.90 3.27
7590 8816 8.802267 AGAACTCTAGGTTTCATATAGCATCTC 58.198 37.037 6.92 0.00 38.41 2.75
7606 8832 7.984050 TCTTGCATTATCTTGAAGAACTCTAGG 59.016 37.037 0.00 0.00 0.00 3.02
7618 8844 7.477733 CGATCGAATTCATCTTGCATTATCTTG 59.522 37.037 10.26 0.00 0.00 3.02
7619 8845 7.360691 CCGATCGAATTCATCTTGCATTATCTT 60.361 37.037 18.66 0.00 0.00 2.40
7666 8892 3.297134 TTTCACCCAAAGCTCAAGACT 57.703 42.857 0.00 0.00 0.00 3.24
7667 8893 3.490933 GGTTTTCACCCAAAGCTCAAGAC 60.491 47.826 0.00 0.00 37.03 3.01
7668 8894 2.693074 GGTTTTCACCCAAAGCTCAAGA 59.307 45.455 0.00 0.00 37.03 3.02
7669 8895 3.097877 GGTTTTCACCCAAAGCTCAAG 57.902 47.619 0.00 0.00 37.03 3.02
7680 8906 1.613520 GCCAGACCTAGGGTTTTCACC 60.614 57.143 14.81 0.00 43.37 4.02
7681 8907 1.613520 GGCCAGACCTAGGGTTTTCAC 60.614 57.143 14.81 0.00 35.25 3.18
7682 8908 0.696501 GGCCAGACCTAGGGTTTTCA 59.303 55.000 14.81 0.00 35.25 2.69
7683 8909 3.571748 GGCCAGACCTAGGGTTTTC 57.428 57.895 14.81 0.81 35.25 2.29
7693 8919 1.198759 TTCACCAGGTAGGCCAGACC 61.199 60.000 17.21 17.21 43.14 3.85
7694 8920 0.250513 CTTCACCAGGTAGGCCAGAC 59.749 60.000 5.01 1.53 43.14 3.51
7695 8921 0.909610 CCTTCACCAGGTAGGCCAGA 60.910 60.000 5.01 0.00 43.14 3.86
7696 8922 1.604378 CCTTCACCAGGTAGGCCAG 59.396 63.158 5.01 0.00 43.14 4.85
7697 8923 2.602676 GCCTTCACCAGGTAGGCCA 61.603 63.158 19.69 0.00 46.94 5.36
7698 8924 2.272471 GCCTTCACCAGGTAGGCC 59.728 66.667 19.69 0.00 46.94 5.19
7700 8926 1.281867 TCAATGCCTTCACCAGGTAGG 59.718 52.381 4.12 4.12 46.07 3.18
7701 8927 2.636830 CTCAATGCCTTCACCAGGTAG 58.363 52.381 0.00 0.00 46.07 3.18
7702 8928 1.340017 GCTCAATGCCTTCACCAGGTA 60.340 52.381 0.00 0.00 46.07 3.08
7703 8929 0.610232 GCTCAATGCCTTCACCAGGT 60.610 55.000 0.00 0.00 46.07 4.00
7705 8931 1.651240 CCGCTCAATGCCTTCACCAG 61.651 60.000 0.00 0.00 38.78 4.00
7706 8932 1.675310 CCGCTCAATGCCTTCACCA 60.675 57.895 0.00 0.00 38.78 4.17
7707 8933 2.409870 CCCGCTCAATGCCTTCACC 61.410 63.158 0.00 0.00 38.78 4.02
7708 8934 2.409870 CCCCGCTCAATGCCTTCAC 61.410 63.158 0.00 0.00 38.78 3.18
7709 8935 2.045045 CCCCGCTCAATGCCTTCA 60.045 61.111 0.00 0.00 38.78 3.02
7710 8936 1.250840 AAACCCCGCTCAATGCCTTC 61.251 55.000 0.00 0.00 38.78 3.46
7711 8937 1.228862 AAACCCCGCTCAATGCCTT 60.229 52.632 0.00 0.00 38.78 4.35
7712 8938 1.978617 CAAACCCCGCTCAATGCCT 60.979 57.895 0.00 0.00 38.78 4.75
7713 8939 2.573340 CAAACCCCGCTCAATGCC 59.427 61.111 0.00 0.00 38.78 4.40
7714 8940 2.125952 GCAAACCCCGCTCAATGC 60.126 61.111 0.00 0.00 38.57 3.56
7715 8941 1.133025 CTAAGCAAACCCCGCTCAATG 59.867 52.381 0.00 0.00 39.29 2.82
7716 8942 1.004277 TCTAAGCAAACCCCGCTCAAT 59.996 47.619 0.00 0.00 39.29 2.57
7717 8943 0.398696 TCTAAGCAAACCCCGCTCAA 59.601 50.000 0.00 0.00 39.29 3.02
7718 8944 0.321298 GTCTAAGCAAACCCCGCTCA 60.321 55.000 0.00 0.00 39.29 4.26
7719 8945 0.036294 AGTCTAAGCAAACCCCGCTC 60.036 55.000 0.00 0.00 39.29 5.03
7720 8946 0.400594 AAGTCTAAGCAAACCCCGCT 59.599 50.000 0.00 0.00 42.98 5.52
7721 8947 0.521735 CAAGTCTAAGCAAACCCCGC 59.478 55.000 0.00 0.00 0.00 6.13
7722 8948 2.178912 TCAAGTCTAAGCAAACCCCG 57.821 50.000 0.00 0.00 0.00 5.73
7745 8971 2.236489 ACCATGGATTTTGACCCTGG 57.764 50.000 21.47 0.00 44.76 4.45
7746 8972 4.339247 GTCATACCATGGATTTTGACCCTG 59.661 45.833 21.47 0.68 0.00 4.45
7752 8978 5.395546 CCCAAAGGTCATACCATGGATTTTG 60.396 44.000 21.47 15.43 45.18 2.44
7753 8979 4.716287 CCCAAAGGTCATACCATGGATTTT 59.284 41.667 21.47 0.00 45.18 1.82
7756 8982 2.858768 ACCCAAAGGTCATACCATGGAT 59.141 45.455 21.47 4.69 46.45 3.41
7763 8989 4.444449 GGATCCTACACCCAAAGGTCATAC 60.444 50.000 3.84 0.00 46.45 2.39
7769 8995 0.180406 CCGGATCCTACACCCAAAGG 59.820 60.000 10.75 0.00 40.04 3.11
7789 9015 1.575922 CACACCAGTGGCATTGTCG 59.424 57.895 9.78 2.11 42.13 4.35
7802 9028 2.028020 CACCTCTAAGAAGGGACACACC 60.028 54.545 0.00 0.00 41.04 4.16
7805 9031 3.306849 GGAACACCTCTAAGAAGGGACAC 60.307 52.174 0.00 0.00 41.04 3.67
7809 9035 4.642466 AAAGGAACACCTCTAAGAAGGG 57.358 45.455 0.00 0.00 41.04 3.95
7810 9036 5.621193 TCAAAAGGAACACCTCTAAGAAGG 58.379 41.667 0.00 0.00 42.55 3.46
7811 9037 6.992715 TCTTCAAAAGGAACACCTCTAAGAAG 59.007 38.462 0.00 0.00 34.08 2.85
7817 9047 4.207955 GGTTCTTCAAAAGGAACACCTCT 58.792 43.478 7.87 0.00 42.29 3.69
7826 9056 7.488150 GGATTATAAAAGCGGTTCTTCAAAAGG 59.512 37.037 0.00 0.00 32.88 3.11
7843 9073 9.996554 ATCTCATGATAACACACGGATTATAAA 57.003 29.630 0.00 0.00 0.00 1.40
7846 9076 8.807118 ACTATCTCATGATAACACACGGATTAT 58.193 33.333 0.00 0.00 35.04 1.28
7851 9081 5.463392 CCAACTATCTCATGATAACACACGG 59.537 44.000 0.00 0.00 35.04 4.94
7852 9082 6.273071 TCCAACTATCTCATGATAACACACG 58.727 40.000 0.00 0.00 35.04 4.49
7860 9090 5.280062 CCATCAGCTCCAACTATCTCATGAT 60.280 44.000 0.00 0.00 36.74 2.45
7877 9107 4.637534 AGATGTACATCAACAACCATCAGC 59.362 41.667 32.01 6.04 40.22 4.26
7879 9109 8.628630 TTAAAGATGTACATCAACAACCATCA 57.371 30.769 32.01 6.91 40.22 3.07
7943 9194 3.982516 AGAGCCAAGTCATACTAGACCA 58.017 45.455 0.00 0.00 39.34 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.