AutoCloner

Multiple sequence alignment - TraesCS4A01G197300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G197300	chr4A	100.000	2807	0	0	1	2807	480558244	480555438	0.000000e+00	5184
1	TraesCS4A01G197300	chr4A	96.395	2580	52	14	113	2655	479625131	479622556	0.000000e+00	4211
2	TraesCS4A01G197300	chr4A	97.813	2012	43	1	1	2012	479431552	479429542	0.000000e+00	3470
3	TraesCS4A01G197300	chr4A	95.368	1900	78	6	113	2008	479903919	479902026	0.000000e+00	3013
4	TraesCS4A01G197300	chr4A	92.119	1954	134	7	113	2066	481065151	481063218	0.000000e+00	2737
5	TraesCS4A01G197300	chr4A	91.086	617	37	9	1529	2144	479620970	479620371	0.000000e+00	819
6	TraesCS4A01G197300	chr4A	92.021	376	28	2	2139	2512	479615155	479614780	6.890000e-146	527
7	TraesCS4A01G197300	chr4A	98.013	302	6	0	113	414	479647454	479647153	2.480000e-145	525
8	TraesCS4A01G197300	chr4A	97.458	118	3	0	1	118	479904067	479903950	4.740000e-48	202
9	TraesCS4A01G197300	chr4A	92.308	117	7	2	1	115	481065300	481065184	6.220000e-37	165
10	TraesCS4A01G197300	chr4A	97.183	71	2	0	2737	2807	479622557	479622487	1.370000e-23	121
11	TraesCS4A01G197300	chr4D	96.933	1956	55	3	113	2068	96711739	96713689	0.000000e+00	3275
12	TraesCS4A01G197300	chr4D	91.582	1972	128	16	113	2066	96892075	96894026	0.000000e+00	2687
13	TraesCS4A01G197300	chr4D	93.662	568	16	5	2107	2655	96714033	96714599	0.000000e+00	832
14	TraesCS4A01G197300	chr4D	97.391	115	3	0	1	115	96711591	96711705	2.210000e-46	196
15	TraesCS4A01G197300	chr4D	93.966	116	6	1	1	115	96891926	96892041	1.030000e-39	174
16	TraesCS4A01G197300	chr4D	94.681	94	4	1	2653	2745	5081575	5081668	8.100000e-31	145
17	TraesCS4A01G197300	chr4D	97.183	71	2	0	2737	2807	96714598	96714668	1.370000e-23	121
18	TraesCS4A01G197300	chr4B	92.720	2033	98	20	1	2008	137701910	137703917	0.000000e+00	2889
19	TraesCS4A01G197300	chr4B	95.206	1481	66	2	532	2012	138276147	138277622	0.000000e+00	2337
20	TraesCS4A01G197300	chr4B	89.000	500	22	15	60	536	138275734	138276223	3.110000e-164	588
21	TraesCS4A01G197300	chr4B	92.473	93	5	2	2654	2745	307108587	307108678	6.310000e-27	132
22	TraesCS4A01G197300	chr4B	91.549	71	6	0	2737	2807	137704826	137704896	6.400000e-17	99
23	TraesCS4A01G197300	chr7B	88.080	1292	142	10	532	1820	20721572	20720290	0.000000e+00	1522
24	TraesCS4A01G197300	chr7A	87.403	1286	147	13	532	1811	79335044	79333768	0.000000e+00	1463
25	TraesCS4A01G197300	chr5B	95.455	88	3	1	2652	2738	707935121	707935208	3.770000e-29	139
26	TraesCS4A01G197300	chr5B	93.478	92	5	1	2652	2742	689662003	689662094	4.880000e-28	135
27	TraesCS4A01G197300	chr2D	95.402	87	3	1	2653	2738	107899778	107899864	1.360000e-28	137
28	TraesCS4A01G197300	chr2D	95.349	86	3	1	2654	2738	52898236	52898151	4.880000e-28	135
29	TraesCS4A01G197300	chr1A	93.548	93	4	2	2654	2744	557480150	557480058	1.360000e-28	137
30	TraesCS4A01G197300	chr3D	94.318	88	4	1	2652	2738	23940352	23940439	1.750000e-27	134
31	TraesCS4A01G197300	chr2A	90.196	102	7	3	2641	2740	609215794	609215894	2.270000e-26	130

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G197300	chr4A	480555438	480558244	2806	True	5184.0	5184	100.00000	1	2807	1	chr4A.!!$R4	2806
1	TraesCS4A01G197300	chr4A	479429542	479431552	2010	True	3470.0	3470	97.81300	1	2012	1	chr4A.!!$R1	2011
2	TraesCS4A01G197300	chr4A	479620371	479625131	4760	True	1717.0	4211	94.88800	113	2807	3	chr4A.!!$R5	2694
3	TraesCS4A01G197300	chr4A	479902026	479904067	2041	True	1607.5	3013	96.41300	1	2008	2	chr4A.!!$R6	2007
4	TraesCS4A01G197300	chr4A	481063218	481065300	2082	True	1451.0	2737	92.21350	1	2066	2	chr4A.!!$R7	2065
5	TraesCS4A01G197300	chr4D	96891926	96894026	2100	False	1430.5	2687	92.77400	1	2066	2	chr4D.!!$F3	2065
6	TraesCS4A01G197300	chr4D	96711591	96714668	3077	False	1106.0	3275	96.29225	1	2807	4	chr4D.!!$F2	2806
7	TraesCS4A01G197300	chr4B	137701910	137704896	2986	False	1494.0	2889	92.13450	1	2807	2	chr4B.!!$F2	2806
8	TraesCS4A01G197300	chr4B	138275734	138277622	1888	False	1462.5	2337	92.10300	60	2012	2	chr4B.!!$F3	1952
9	TraesCS4A01G197300	chr7B	20720290	20721572	1282	True	1522.0	1522	88.08000	532	1820	1	chr7B.!!$R1	1288
10	TraesCS4A01G197300	chr7A	79333768	79335044	1276	True	1463.0	1463	87.40300	532	1811	1	chr7A.!!$R1	1279

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
763	894	1.701847	ACACCTCTGAATCTGCTGGTT	59.298	47.619	0.0	0.0	0.0	3.67	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2416	2862	0.037975	AGCCGAAATGCTTGCCAAAG	60.038	50.0	0.0	0.0	38.85	2.77	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
303	362	5.757320	CAGATTAGATACAAGCCAAGTCCAG	59.243	44.000	0.00	0.00	0.00	3.86
763	894	1.701847	ACACCTCTGAATCTGCTGGTT	59.298	47.619	0.00	0.00	0.00	3.67
1035	1166	1.067212	GAGCAACTGTACGATCCGGAT	59.933	52.381	19.21	19.21	0.00	4.18
1650	1784	1.362768	TCGCAGATGATGAGCAACAC	58.637	50.000	0.00	0.00	0.00	3.32
1889	2023	2.368439	GTGGGCAGATGCTATGACAAA	58.632	47.619	4.59	0.00	41.70	2.83
2070	2207	7.363793	GCTGAATATTGTTTGTTTGATACCCCT	60.364	37.037	0.00	0.00	0.00	4.79
2116	2558	5.986741	TGAAAGTACAATTTGCGTACTCTCA	59.013	36.000	6.53	6.53	46.84	3.27
2300	2742	7.773224	TGACATCATTTTCTGATTATTACCGGT	59.227	33.333	13.98	13.98	42.07	5.28
2393	2839	2.409948	ATTACACTCTTGCTCCTGGC	57.590	50.000	0.00	0.00	42.22	4.85
2412	2858	3.118884	TGGCCTACTTGATACGGTTCTTC	60.119	47.826	3.32	0.00	0.00	2.87
2413	2859	3.118884	GGCCTACTTGATACGGTTCTTCA	60.119	47.826	0.00	0.00	0.00	3.02
2414	2860	4.443034	GGCCTACTTGATACGGTTCTTCAT	60.443	45.833	0.00	0.00	0.00	2.57
2415	2861	4.508124	GCCTACTTGATACGGTTCTTCATG	59.492	45.833	0.00	0.00	0.00	3.07
2416	2862	4.508124	CCTACTTGATACGGTTCTTCATGC	59.492	45.833	0.00	0.00	0.00	4.06
2533	2980	0.100503	GGCATGTTTGTCGGCATACC	59.899	55.000	8.14	0.00	0.00	2.73
2653	3114	6.992715	GGTATGATTACCAGTGCTAATTCACT	59.007	38.462	0.00	0.00	46.24	3.41
2654	3115	8.148351	GGTATGATTACCAGTGCTAATTCACTA	58.852	37.037	0.00	0.00	46.24	2.74
2655	3116	8.979574	GTATGATTACCAGTGCTAATTCACTAC	58.020	37.037	0.00	0.00	44.81	2.73
2656	3117	7.182817	TGATTACCAGTGCTAATTCACTACT	57.817	36.000	0.00	0.00	44.81	2.57
2657	3118	7.265673	TGATTACCAGTGCTAATTCACTACTC	58.734	38.462	0.00	0.00	44.81	2.59
2658	3119	4.473477	ACCAGTGCTAATTCACTACTCC	57.527	45.455	0.00	0.00	44.81	3.85
2659	3120	3.197983	ACCAGTGCTAATTCACTACTCCC	59.802	47.826	0.00	0.00	44.81	4.30
2660	3121	3.452627	CCAGTGCTAATTCACTACTCCCT	59.547	47.826	0.00	0.00	44.81	4.20
2661	3122	4.442192	CCAGTGCTAATTCACTACTCCCTC	60.442	50.000	0.00	0.00	44.81	4.30
2662	3123	3.707102	AGTGCTAATTCACTACTCCCTCC	59.293	47.826	0.00	0.00	44.77	4.30
2663	3124	2.693591	TGCTAATTCACTACTCCCTCCG	59.306	50.000	0.00	0.00	0.00	4.63
2664	3125	2.694109	GCTAATTCACTACTCCCTCCGT	59.306	50.000	0.00	0.00	0.00	4.69
2665	3126	3.243468	GCTAATTCACTACTCCCTCCGTC	60.243	52.174	0.00	0.00	0.00	4.79
2666	3127	1.777941	ATTCACTACTCCCTCCGTCC	58.222	55.000	0.00	0.00	0.00	4.79
2667	3128	0.406750	TTCACTACTCCCTCCGTCCA	59.593	55.000	0.00	0.00	0.00	4.02
2668	3129	0.406750	TCACTACTCCCTCCGTCCAA	59.593	55.000	0.00	0.00	0.00	3.53
2669	3130	1.203087	TCACTACTCCCTCCGTCCAAA	60.203	52.381	0.00	0.00	0.00	3.28
2670	3131	1.831736	CACTACTCCCTCCGTCCAAAT	59.168	52.381	0.00	0.00	0.00	2.32
2671	3132	2.236395	CACTACTCCCTCCGTCCAAATT	59.764	50.000	0.00	0.00	0.00	1.82
2672	3133	3.449737	CACTACTCCCTCCGTCCAAATTA	59.550	47.826	0.00	0.00	0.00	1.40
2673	3134	3.450096	ACTACTCCCTCCGTCCAAATTAC	59.550	47.826	0.00	0.00	0.00	1.89
2674	3135	2.547990	ACTCCCTCCGTCCAAATTACT	58.452	47.619	0.00	0.00	0.00	2.24
2675	3136	2.500504	ACTCCCTCCGTCCAAATTACTC	59.499	50.000	0.00	0.00	0.00	2.59
2676	3137	1.479323	TCCCTCCGTCCAAATTACTCG	59.521	52.381	0.00	0.00	0.00	4.18
2677	3138	1.206371	CCCTCCGTCCAAATTACTCGT	59.794	52.381	0.00	0.00	0.00	4.18
2678	3139	2.537401	CCTCCGTCCAAATTACTCGTC	58.463	52.381	0.00	0.00	0.00	4.20
2679	3140	2.182825	CTCCGTCCAAATTACTCGTCG	58.817	52.381	0.00	0.00	0.00	5.12
2680	3141	1.541147	TCCGTCCAAATTACTCGTCGT	59.459	47.619	0.00	0.00	0.00	4.34
2681	3142	2.030007	TCCGTCCAAATTACTCGTCGTT	60.030	45.455	0.00	0.00	0.00	3.85
2682	3143	2.091588	CCGTCCAAATTACTCGTCGTTG	59.908	50.000	0.00	0.00	0.00	4.10
2683	3144	2.727798	CGTCCAAATTACTCGTCGTTGT	59.272	45.455	0.00	0.00	0.00	3.32
2684	3145	3.182972	CGTCCAAATTACTCGTCGTTGTT	59.817	43.478	0.00	0.00	0.00	2.83
2685	3146	4.318263	CGTCCAAATTACTCGTCGTTGTTT	60.318	41.667	0.00	0.00	0.00	2.83
2686	3147	5.504392	GTCCAAATTACTCGTCGTTGTTTT	58.496	37.500	0.00	0.00	0.00	2.43
2687	3148	6.561902	CGTCCAAATTACTCGTCGTTGTTTTA	60.562	38.462	0.00	0.00	0.00	1.52
2688	3149	6.788930	GTCCAAATTACTCGTCGTTGTTTTAG	59.211	38.462	0.00	0.00	0.00	1.85
2689	3150	6.479660	TCCAAATTACTCGTCGTTGTTTTAGT	59.520	34.615	0.00	0.00	0.00	2.24
2690	3151	7.011295	TCCAAATTACTCGTCGTTGTTTTAGTT	59.989	33.333	0.00	0.00	0.00	2.24
2691	3152	7.319615	CCAAATTACTCGTCGTTGTTTTAGTTC	59.680	37.037	0.00	0.00	0.00	3.01
2692	3153	7.467557	AATTACTCGTCGTTGTTTTAGTTCA	57.532	32.000	0.00	0.00	0.00	3.18
2693	3154	6.884096	TTACTCGTCGTTGTTTTAGTTCAA	57.116	33.333	0.00	0.00	0.00	2.69
2694	3155	5.783100	ACTCGTCGTTGTTTTAGTTCAAA	57.217	34.783	0.00	0.00	0.00	2.69
2695	3156	6.354039	ACTCGTCGTTGTTTTAGTTCAAAT	57.646	33.333	0.00	0.00	0.00	2.32
2696	3157	6.778108	ACTCGTCGTTGTTTTAGTTCAAATT	58.222	32.000	0.00	0.00	0.00	1.82
2697	3158	7.245604	ACTCGTCGTTGTTTTAGTTCAAATTT	58.754	30.769	0.00	0.00	0.00	1.82
2698	3159	7.217447	ACTCGTCGTTGTTTTAGTTCAAATTTG	59.783	33.333	12.15	12.15	0.00	2.32
2699	3160	7.242079	TCGTCGTTGTTTTAGTTCAAATTTGA	58.758	30.769	16.91	16.91	34.92	2.69
2700	3161	7.749570	TCGTCGTTGTTTTAGTTCAAATTTGAA	59.250	29.630	26.01	26.01	44.31	2.69
2728	3189	8.889849	AAAATAACGATGAGTAATTTGGAACG	57.110	30.769	0.00	0.00	0.00	3.95
2729	3190	4.939509	AACGATGAGTAATTTGGAACGG	57.060	40.909	0.00	0.00	0.00	4.44
2730	3191	4.196626	ACGATGAGTAATTTGGAACGGA	57.803	40.909	0.00	0.00	0.00	4.69
2731	3192	4.181578	ACGATGAGTAATTTGGAACGGAG	58.818	43.478	0.00	0.00	0.00	4.63
2732	3193	3.555956	CGATGAGTAATTTGGAACGGAGG	59.444	47.826	0.00	0.00	0.00	4.30
2733	3194	3.343941	TGAGTAATTTGGAACGGAGGG	57.656	47.619	0.00	0.00	0.00	4.30
2734	3195	2.907696	TGAGTAATTTGGAACGGAGGGA	59.092	45.455	0.00	0.00	0.00	4.20
2735	3196	3.055385	TGAGTAATTTGGAACGGAGGGAG	60.055	47.826	0.00	0.00	0.00	4.30
2752	3213	6.602278	GGAGGGAGTATTTATTTAGCTGGTT	58.398	40.000	0.00	0.00	0.00	3.67

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
303	362	1.661509	GCTTCAGCGGCAAACCAAC	60.662	57.895	1.45	0.00	34.57	3.77
678	809	1.301009	GCAGAGGCTGGTATACGCC	60.301	63.158	12.48	12.48	46.65	5.68
763	894	5.067936	GGCTGTAGAGACAAGCTACATTCTA	59.932	44.000	0.00	0.00	44.98	2.10
1035	1166	4.403734	GACCAACCATTTCAGGGTCTAAA	58.596	43.478	0.00	0.00	43.62	1.85
1650	1784	6.204882	GGGGATTCGTCTTATACTTCCAATTG	59.795	42.308	0.00	0.00	0.00	2.32
1889	2023	4.080863	AGAGATAAACGGAACATGCTTCCT	60.081	41.667	18.73	8.20	36.45	3.36
2041	2178	7.816995	GGTATCAAACAAACAATATTCAGCCAA	59.183	33.333	0.00	0.00	0.00	4.52
2077	2214	4.569719	ACTTTCAGTTATAGTGGGGGTG	57.430	45.455	0.00	0.00	0.00	4.61
2078	2215	5.095809	TGTACTTTCAGTTATAGTGGGGGT	58.904	41.667	0.00	0.00	0.00	4.95
2131	2573	5.484715	GTTACTACATGGCTTGTACTTCCA	58.515	41.667	8.98	0.00	39.87	3.53
2146	2588	5.276461	CATGCTACTGGATGGTTACTACA	57.724	43.478	0.00	0.00	38.20	2.74
2200	2642	8.188799	CAGACACAATGAAAGCATCAGAAATAT	58.811	33.333	0.00	0.00	42.53	1.28
2296	2738	2.677836	CAATTCCACTGACATGTACCGG	59.322	50.000	0.00	0.00	0.00	5.28
2300	2742	5.822519	GGATAAGCAATTCCACTGACATGTA	59.177	40.000	0.00	0.00	31.99	2.29
2385	2831	1.269831	CGTATCAAGTAGGCCAGGAGC	60.270	57.143	5.01	0.00	42.60	4.70
2393	2839	4.508124	GCATGAAGAACCGTATCAAGTAGG	59.492	45.833	0.00	0.00	0.00	3.18
2416	2862	0.037975	AGCCGAAATGCTTGCCAAAG	60.038	50.000	0.00	0.00	38.85	2.77
2494	2941	0.387750	GACCACAGTACCGTTCGGTC	60.388	60.000	20.17	11.88	39.52	4.79
2549	2996	5.178797	CACGTCTTCACCTCATAAGGAAAT	58.821	41.667	0.00	0.00	46.67	2.17
2653	3114	3.703052	GAGTAATTTGGACGGAGGGAGTA	59.297	47.826	0.00	0.00	0.00	2.59
2654	3115	2.500504	GAGTAATTTGGACGGAGGGAGT	59.499	50.000	0.00	0.00	0.00	3.85
2655	3116	2.481449	CGAGTAATTTGGACGGAGGGAG	60.481	54.545	0.00	0.00	0.00	4.30
2656	3117	1.479323	CGAGTAATTTGGACGGAGGGA	59.521	52.381	0.00	0.00	0.00	4.20
2657	3118	1.206371	ACGAGTAATTTGGACGGAGGG	59.794	52.381	0.00	0.00	0.00	4.30
2658	3119	2.537401	GACGAGTAATTTGGACGGAGG	58.463	52.381	0.00	0.00	0.00	4.30
2659	3120	2.182825	CGACGAGTAATTTGGACGGAG	58.817	52.381	0.00	0.00	0.00	4.63
2660	3121	1.541147	ACGACGAGTAATTTGGACGGA	59.459	47.619	0.00	0.00	0.00	4.69
2661	3122	1.986698	ACGACGAGTAATTTGGACGG	58.013	50.000	0.00	0.00	0.00	4.79
2662	3123	2.727798	ACAACGACGAGTAATTTGGACG	59.272	45.455	0.00	0.00	0.00	4.79
2663	3124	4.720530	AACAACGACGAGTAATTTGGAC	57.279	40.909	0.00	0.00	0.00	4.02
2664	3125	5.738118	AAAACAACGACGAGTAATTTGGA	57.262	34.783	0.00	0.00	0.00	3.53
2665	3126	6.652245	ACTAAAACAACGACGAGTAATTTGG	58.348	36.000	0.00	3.54	0.00	3.28
2666	3127	7.847078	TGAACTAAAACAACGACGAGTAATTTG	59.153	33.333	0.00	0.00	0.00	2.32
2667	3128	7.908230	TGAACTAAAACAACGACGAGTAATTT	58.092	30.769	0.00	1.54	0.00	1.82
2668	3129	7.467557	TGAACTAAAACAACGACGAGTAATT	57.532	32.000	0.00	2.24	0.00	1.40
2669	3130	7.467557	TTGAACTAAAACAACGACGAGTAAT	57.532	32.000	0.00	0.00	0.00	1.89
2670	3131	6.884096	TTGAACTAAAACAACGACGAGTAA	57.116	33.333	0.00	0.00	0.00	2.24
2671	3132	6.884096	TTTGAACTAAAACAACGACGAGTA	57.116	33.333	0.00	0.00	0.00	2.59
2672	3133	5.783100	TTTGAACTAAAACAACGACGAGT	57.217	34.783	0.00	0.00	0.00	4.18
2673	3134	7.427030	TCAAATTTGAACTAAAACAACGACGAG	59.573	33.333	18.45	0.00	33.55	4.18
2674	3135	7.242079	TCAAATTTGAACTAAAACAACGACGA	58.758	30.769	18.45	0.00	33.55	4.20
2675	3136	7.425915	TCAAATTTGAACTAAAACAACGACG	57.574	32.000	18.45	0.00	33.55	5.12
2702	3163	9.976255	CGTTCCAAATTACTCATCGTTATTTTA	57.024	29.630	0.00	0.00	33.83	1.52
2703	3164	7.966204	CCGTTCCAAATTACTCATCGTTATTTT	59.034	33.333	0.00	0.00	33.83	1.82
2704	3165	7.334921	TCCGTTCCAAATTACTCATCGTTATTT	59.665	33.333	0.00	0.00	35.79	1.40
2705	3166	6.819649	TCCGTTCCAAATTACTCATCGTTATT	59.180	34.615	0.00	0.00	0.00	1.40
2706	3167	6.342906	TCCGTTCCAAATTACTCATCGTTAT	58.657	36.000	0.00	0.00	0.00	1.89
2707	3168	5.722263	TCCGTTCCAAATTACTCATCGTTA	58.278	37.500	0.00	0.00	0.00	3.18
2708	3169	4.571919	TCCGTTCCAAATTACTCATCGTT	58.428	39.130	0.00	0.00	0.00	3.85
2709	3170	4.181578	CTCCGTTCCAAATTACTCATCGT	58.818	43.478	0.00	0.00	0.00	3.73
2710	3171	3.555956	CCTCCGTTCCAAATTACTCATCG	59.444	47.826	0.00	0.00	0.00	3.84
2711	3172	3.877508	CCCTCCGTTCCAAATTACTCATC	59.122	47.826	0.00	0.00	0.00	2.92
2712	3173	3.521937	TCCCTCCGTTCCAAATTACTCAT	59.478	43.478	0.00	0.00	0.00	2.90
2713	3174	2.907696	TCCCTCCGTTCCAAATTACTCA	59.092	45.455	0.00	0.00	0.00	3.41
2714	3175	3.055312	ACTCCCTCCGTTCCAAATTACTC	60.055	47.826	0.00	0.00	0.00	2.59
2715	3176	2.910977	ACTCCCTCCGTTCCAAATTACT	59.089	45.455	0.00	0.00	0.00	2.24
2716	3177	3.345508	ACTCCCTCCGTTCCAAATTAC	57.654	47.619	0.00	0.00	0.00	1.89
2717	3178	5.703730	AATACTCCCTCCGTTCCAAATTA	57.296	39.130	0.00	0.00	0.00	1.40
2718	3179	4.586306	AATACTCCCTCCGTTCCAAATT	57.414	40.909	0.00	0.00	0.00	1.82
2719	3180	4.586306	AAATACTCCCTCCGTTCCAAAT	57.414	40.909	0.00	0.00	0.00	2.32
2720	3181	5.703730	ATAAATACTCCCTCCGTTCCAAA	57.296	39.130	0.00	0.00	0.00	3.28
2721	3182	5.703730	AATAAATACTCCCTCCGTTCCAA	57.296	39.130	0.00	0.00	0.00	3.53
2722	3183	5.703730	AAATAAATACTCCCTCCGTTCCA	57.296	39.130	0.00	0.00	0.00	3.53
2723	3184	5.699915	GCTAAATAAATACTCCCTCCGTTCC	59.300	44.000	0.00	0.00	0.00	3.62
2724	3185	6.424207	CAGCTAAATAAATACTCCCTCCGTTC	59.576	42.308	0.00	0.00	0.00	3.95
2725	3186	6.289064	CAGCTAAATAAATACTCCCTCCGTT	58.711	40.000	0.00	0.00	0.00	4.44
2726	3187	5.221661	CCAGCTAAATAAATACTCCCTCCGT	60.222	44.000	0.00	0.00	0.00	4.69
2727	3188	5.221661	ACCAGCTAAATAAATACTCCCTCCG	60.222	44.000	0.00	0.00	0.00	4.63
2728	3189	6.189036	ACCAGCTAAATAAATACTCCCTCC	57.811	41.667	0.00	0.00	0.00	4.30
2729	3190	9.794719	ATAAACCAGCTAAATAAATACTCCCTC	57.205	33.333	0.00	0.00	0.00	4.30

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.