Multiple sequence alignment - TraesCS4A01G195800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G195800 chr4A 100.000 3093 0 0 1 3093 478190459 478193551 0.000000e+00 5712
1 TraesCS4A01G195800 chr4A 84.470 2009 211 45 498 2459 90438991 90440945 0.000000e+00 1888
2 TraesCS4A01G195800 chr4A 79.420 1759 287 40 733 2476 36608002 36606304 0.000000e+00 1173
3 TraesCS4A01G195800 chr4D 95.218 2635 88 18 471 3092 98015908 98013299 0.000000e+00 4133
4 TraesCS4A01G195800 chr4D 80.955 1717 251 39 773 2476 435198935 435197282 0.000000e+00 1290
5 TraesCS4A01G195800 chr4D 82.902 889 124 16 725 1590 505358918 505358035 0.000000e+00 774
6 TraesCS4A01G195800 chr4D 87.384 539 50 3 1917 2437 374040465 374039927 1.230000e-168 603
7 TraesCS4A01G195800 chr4B 95.209 2150 85 8 471 2608 139594149 139592006 0.000000e+00 3384
8 TraesCS4A01G195800 chr4B 88.989 1326 120 14 564 1881 460157012 460155705 0.000000e+00 1616
9 TraesCS4A01G195800 chr4B 80.362 1767 267 48 724 2476 535331731 535330031 0.000000e+00 1267
10 TraesCS4A01G195800 chr4B 86.713 572 53 5 1927 2475 460155696 460155125 5.670000e-172 614
11 TraesCS4A01G195800 chr4B 86.441 295 29 3 2799 3093 139574477 139574194 2.320000e-81 313
12 TraesCS4A01G195800 chr3B 82.341 1461 216 22 728 2174 706028935 706027503 0.000000e+00 1230
13 TraesCS4A01G195800 chr3B 82.058 1176 185 17 728 1890 706182854 706184016 0.000000e+00 979
14 TraesCS4A01G195800 chr3B 80.641 780 133 12 1116 1885 706711683 706712454 3.440000e-164 588
15 TraesCS4A01G195800 chr3D 82.341 1461 213 28 728 2174 533960133 533958704 0.000000e+00 1227
16 TraesCS4A01G195800 chr3D 81.263 1441 235 26 754 2178 535399957 535401378 0.000000e+00 1133
17 TraesCS4A01G195800 chr3D 80.588 1463 234 33 728 2174 534115582 534117010 0.000000e+00 1083
18 TraesCS4A01G195800 chr7D 79.183 1518 250 37 724 2214 63462316 63463794 0.000000e+00 992
19 TraesCS4A01G195800 chr3A 80.169 948 141 28 1247 2178 670545603 670546519 0.000000e+00 665
20 TraesCS4A01G195800 chr6D 84.262 413 63 2 1957 2368 61004181 61004592 4.800000e-108 401
21 TraesCS4A01G195800 chr6B 89.691 291 16 4 107 383 132332395 132332685 2.930000e-95 359
22 TraesCS4A01G195800 chr2A 89.347 291 17 5 107 383 12905238 12904948 1.360000e-93 353
23 TraesCS4A01G195800 chr7A 88.660 291 19 5 107 383 42301214 42301504 2.950000e-90 342
24 TraesCS4A01G195800 chr5B 91.150 226 20 0 108 333 584608086 584608311 1.080000e-79 307
25 TraesCS4A01G195800 chrUn 90.000 180 18 0 107 286 63033924 63033745 1.850000e-57 233
26 TraesCS4A01G195800 chr5A 84.252 127 6 4 271 383 473821061 473821187 9.070000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G195800 chr4A 478190459 478193551 3092 False 5712 5712 100.000 1 3093 1 chr4A.!!$F2 3092
1 TraesCS4A01G195800 chr4A 90438991 90440945 1954 False 1888 1888 84.470 498 2459 1 chr4A.!!$F1 1961
2 TraesCS4A01G195800 chr4A 36606304 36608002 1698 True 1173 1173 79.420 733 2476 1 chr4A.!!$R1 1743
3 TraesCS4A01G195800 chr4D 98013299 98015908 2609 True 4133 4133 95.218 471 3092 1 chr4D.!!$R1 2621
4 TraesCS4A01G195800 chr4D 435197282 435198935 1653 True 1290 1290 80.955 773 2476 1 chr4D.!!$R3 1703
5 TraesCS4A01G195800 chr4D 505358035 505358918 883 True 774 774 82.902 725 1590 1 chr4D.!!$R4 865
6 TraesCS4A01G195800 chr4D 374039927 374040465 538 True 603 603 87.384 1917 2437 1 chr4D.!!$R2 520
7 TraesCS4A01G195800 chr4B 139592006 139594149 2143 True 3384 3384 95.209 471 2608 1 chr4B.!!$R2 2137
8 TraesCS4A01G195800 chr4B 535330031 535331731 1700 True 1267 1267 80.362 724 2476 1 chr4B.!!$R3 1752
9 TraesCS4A01G195800 chr4B 460155125 460157012 1887 True 1115 1616 87.851 564 2475 2 chr4B.!!$R4 1911
10 TraesCS4A01G195800 chr3B 706027503 706028935 1432 True 1230 1230 82.341 728 2174 1 chr3B.!!$R1 1446
11 TraesCS4A01G195800 chr3B 706182854 706184016 1162 False 979 979 82.058 728 1890 1 chr3B.!!$F1 1162
12 TraesCS4A01G195800 chr3B 706711683 706712454 771 False 588 588 80.641 1116 1885 1 chr3B.!!$F2 769
13 TraesCS4A01G195800 chr3D 533958704 533960133 1429 True 1227 1227 82.341 728 2174 1 chr3D.!!$R1 1446
14 TraesCS4A01G195800 chr3D 535399957 535401378 1421 False 1133 1133 81.263 754 2178 1 chr3D.!!$F2 1424
15 TraesCS4A01G195800 chr3D 534115582 534117010 1428 False 1083 1083 80.588 728 2174 1 chr3D.!!$F1 1446
16 TraesCS4A01G195800 chr7D 63462316 63463794 1478 False 992 992 79.183 724 2214 1 chr7D.!!$F1 1490
17 TraesCS4A01G195800 chr3A 670545603 670546519 916 False 665 665 80.169 1247 2178 1 chr3A.!!$F1 931

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.036105 ATGATCACAGCGCAAGGACA 60.036 50.0 11.47 2.67 38.28 4.02 F
310 311 0.040425 CCGCACCACTGTTTAGTTGC 60.040 55.0 0.00 0.00 37.33 4.17 F
1881 1959 0.177141 CCATTGGCCTCCATTTGCAG 59.823 55.0 3.32 0.00 31.53 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1855 1933 0.041535 TGGAGGCCAATGGAAGCATT 59.958 50.000 5.01 0.0 0.0 3.56 R
2023 2138 2.046892 GTGCCAGACTCGTGCCAT 60.047 61.111 0.00 0.0 0.0 4.40 R
2998 3140 2.890945 GTGTGGTGGCTCAAGGTTAAAT 59.109 45.455 0.00 0.0 0.0 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.609301 TCCCCAAGGAATAGTGAATTTGG 58.391 43.478 0.00 0.00 40.08 3.28
29 30 3.706086 CCCCAAGGAATAGTGAATTTGGG 59.294 47.826 12.10 12.10 40.66 4.12
30 31 3.706086 CCCAAGGAATAGTGAATTTGGGG 59.294 47.826 11.37 0.00 38.64 4.96
31 32 4.571792 CCCAAGGAATAGTGAATTTGGGGA 60.572 45.833 11.37 0.00 38.64 4.81
32 33 5.211201 CCAAGGAATAGTGAATTTGGGGAT 58.789 41.667 0.00 0.00 0.00 3.85
33 34 6.372931 CCAAGGAATAGTGAATTTGGGGATA 58.627 40.000 0.00 0.00 0.00 2.59
34 35 6.838612 CCAAGGAATAGTGAATTTGGGGATAA 59.161 38.462 0.00 0.00 0.00 1.75
35 36 7.344352 CCAAGGAATAGTGAATTTGGGGATAAA 59.656 37.037 0.00 0.00 0.00 1.40
36 37 8.757877 CAAGGAATAGTGAATTTGGGGATAAAA 58.242 33.333 0.00 0.00 0.00 1.52
37 38 9.506042 AAGGAATAGTGAATTTGGGGATAAAAT 57.494 29.630 0.00 0.00 0.00 1.82
38 39 9.147732 AGGAATAGTGAATTTGGGGATAAAATC 57.852 33.333 0.00 0.00 0.00 2.17
52 53 5.774498 GATAAAATCCACATCCCCAACTC 57.226 43.478 0.00 0.00 0.00 3.01
53 54 3.541242 AAAATCCACATCCCCAACTCA 57.459 42.857 0.00 0.00 0.00 3.41
54 55 2.514458 AATCCACATCCCCAACTCAC 57.486 50.000 0.00 0.00 0.00 3.51
55 56 1.673767 ATCCACATCCCCAACTCACT 58.326 50.000 0.00 0.00 0.00 3.41
56 57 1.444933 TCCACATCCCCAACTCACTT 58.555 50.000 0.00 0.00 0.00 3.16
57 58 2.626785 TCCACATCCCCAACTCACTTA 58.373 47.619 0.00 0.00 0.00 2.24
58 59 3.189606 TCCACATCCCCAACTCACTTAT 58.810 45.455 0.00 0.00 0.00 1.73
59 60 3.054434 TCCACATCCCCAACTCACTTATG 60.054 47.826 0.00 0.00 0.00 1.90
60 61 2.684881 CACATCCCCAACTCACTTATGC 59.315 50.000 0.00 0.00 0.00 3.14
61 62 2.578021 ACATCCCCAACTCACTTATGCT 59.422 45.455 0.00 0.00 0.00 3.79
62 63 3.010584 ACATCCCCAACTCACTTATGCTT 59.989 43.478 0.00 0.00 0.00 3.91
63 64 4.227300 ACATCCCCAACTCACTTATGCTTA 59.773 41.667 0.00 0.00 0.00 3.09
64 65 4.919774 TCCCCAACTCACTTATGCTTAA 57.080 40.909 0.00 0.00 0.00 1.85
65 66 5.450818 TCCCCAACTCACTTATGCTTAAT 57.549 39.130 0.00 0.00 0.00 1.40
66 67 5.437060 TCCCCAACTCACTTATGCTTAATC 58.563 41.667 0.00 0.00 0.00 1.75
67 68 4.580580 CCCCAACTCACTTATGCTTAATCC 59.419 45.833 0.00 0.00 0.00 3.01
68 69 5.440610 CCCAACTCACTTATGCTTAATCCT 58.559 41.667 0.00 0.00 0.00 3.24
69 70 5.888161 CCCAACTCACTTATGCTTAATCCTT 59.112 40.000 0.00 0.00 0.00 3.36
70 71 6.038714 CCCAACTCACTTATGCTTAATCCTTC 59.961 42.308 0.00 0.00 0.00 3.46
71 72 6.038714 CCAACTCACTTATGCTTAATCCTTCC 59.961 42.308 0.00 0.00 0.00 3.46
72 73 5.685728 ACTCACTTATGCTTAATCCTTCCC 58.314 41.667 0.00 0.00 0.00 3.97
73 74 5.048846 TCACTTATGCTTAATCCTTCCCC 57.951 43.478 0.00 0.00 0.00 4.81
74 75 3.815401 CACTTATGCTTAATCCTTCCCCG 59.185 47.826 0.00 0.00 0.00 5.73
75 76 3.714798 ACTTATGCTTAATCCTTCCCCGA 59.285 43.478 0.00 0.00 0.00 5.14
76 77 2.640316 ATGCTTAATCCTTCCCCGAC 57.360 50.000 0.00 0.00 0.00 4.79
77 78 1.580059 TGCTTAATCCTTCCCCGACT 58.420 50.000 0.00 0.00 0.00 4.18
78 79 1.485066 TGCTTAATCCTTCCCCGACTC 59.515 52.381 0.00 0.00 0.00 3.36
79 80 1.485066 GCTTAATCCTTCCCCGACTCA 59.515 52.381 0.00 0.00 0.00 3.41
80 81 2.742204 GCTTAATCCTTCCCCGACTCAC 60.742 54.545 0.00 0.00 0.00 3.51
81 82 2.544844 TAATCCTTCCCCGACTCACT 57.455 50.000 0.00 0.00 0.00 3.41
82 83 1.657804 AATCCTTCCCCGACTCACTT 58.342 50.000 0.00 0.00 0.00 3.16
83 84 2.544844 ATCCTTCCCCGACTCACTTA 57.455 50.000 0.00 0.00 0.00 2.24
84 85 2.544844 TCCTTCCCCGACTCACTTAT 57.455 50.000 0.00 0.00 0.00 1.73
85 86 3.675348 TCCTTCCCCGACTCACTTATA 57.325 47.619 0.00 0.00 0.00 0.98
86 87 3.294214 TCCTTCCCCGACTCACTTATAC 58.706 50.000 0.00 0.00 0.00 1.47
87 88 3.053095 TCCTTCCCCGACTCACTTATACT 60.053 47.826 0.00 0.00 0.00 2.12
88 89 3.705072 CCTTCCCCGACTCACTTATACTT 59.295 47.826 0.00 0.00 0.00 2.24
89 90 4.441634 CCTTCCCCGACTCACTTATACTTG 60.442 50.000 0.00 0.00 0.00 3.16
90 91 3.972133 TCCCCGACTCACTTATACTTGA 58.028 45.455 0.00 0.00 0.00 3.02
91 92 4.543689 TCCCCGACTCACTTATACTTGAT 58.456 43.478 0.00 0.00 0.00 2.57
92 93 4.583489 TCCCCGACTCACTTATACTTGATC 59.417 45.833 0.00 0.00 0.00 2.92
93 94 4.262079 CCCCGACTCACTTATACTTGATCC 60.262 50.000 0.00 0.00 0.00 3.36
94 95 4.585162 CCCGACTCACTTATACTTGATCCT 59.415 45.833 0.00 0.00 0.00 3.24
95 96 5.069251 CCCGACTCACTTATACTTGATCCTT 59.931 44.000 0.00 0.00 0.00 3.36
96 97 6.210078 CCGACTCACTTATACTTGATCCTTC 58.790 44.000 0.00 0.00 0.00 3.46
97 98 6.210078 CGACTCACTTATACTTGATCCTTCC 58.790 44.000 0.00 0.00 0.00 3.46
98 99 6.487299 ACTCACTTATACTTGATCCTTCCC 57.513 41.667 0.00 0.00 0.00 3.97
99 100 5.367060 ACTCACTTATACTTGATCCTTCCCC 59.633 44.000 0.00 0.00 0.00 4.81
100 101 4.344102 TCACTTATACTTGATCCTTCCCCG 59.656 45.833 0.00 0.00 0.00 5.73
101 102 4.344102 CACTTATACTTGATCCTTCCCCGA 59.656 45.833 0.00 0.00 0.00 5.14
102 103 4.344390 ACTTATACTTGATCCTTCCCCGAC 59.656 45.833 0.00 0.00 0.00 4.79
103 104 2.544844 TACTTGATCCTTCCCCGACT 57.455 50.000 0.00 0.00 0.00 4.18
104 105 1.196012 ACTTGATCCTTCCCCGACTC 58.804 55.000 0.00 0.00 0.00 3.36
105 106 1.195115 CTTGATCCTTCCCCGACTCA 58.805 55.000 0.00 0.00 0.00 3.41
106 107 0.902531 TTGATCCTTCCCCGACTCAC 59.097 55.000 0.00 0.00 0.00 3.51
107 108 0.041238 TGATCCTTCCCCGACTCACT 59.959 55.000 0.00 0.00 0.00 3.41
108 109 1.196012 GATCCTTCCCCGACTCACTT 58.804 55.000 0.00 0.00 0.00 3.16
109 110 0.905357 ATCCTTCCCCGACTCACTTG 59.095 55.000 0.00 0.00 0.00 3.16
110 111 0.178944 TCCTTCCCCGACTCACTTGA 60.179 55.000 0.00 0.00 0.00 3.02
111 112 0.905357 CCTTCCCCGACTCACTTGAT 59.095 55.000 0.00 0.00 0.00 2.57
112 113 1.279271 CCTTCCCCGACTCACTTGATT 59.721 52.381 0.00 0.00 0.00 2.57
113 114 2.350522 CTTCCCCGACTCACTTGATTG 58.649 52.381 0.00 0.00 0.00 2.67
114 115 1.348064 TCCCCGACTCACTTGATTGT 58.652 50.000 0.00 0.00 0.00 2.71
115 116 1.001974 TCCCCGACTCACTTGATTGTG 59.998 52.381 0.00 0.00 39.15 3.33
116 117 0.798776 CCCGACTCACTTGATTGTGC 59.201 55.000 0.00 0.00 37.81 4.57
117 118 0.439985 CCGACTCACTTGATTGTGCG 59.560 55.000 0.00 0.00 37.81 5.34
118 119 0.439985 CGACTCACTTGATTGTGCGG 59.560 55.000 0.00 0.00 37.81 5.69
119 120 1.795768 GACTCACTTGATTGTGCGGA 58.204 50.000 0.00 0.00 37.81 5.54
120 121 1.728971 GACTCACTTGATTGTGCGGAG 59.271 52.381 0.00 0.00 37.81 4.63
121 122 1.081892 CTCACTTGATTGTGCGGAGG 58.918 55.000 0.00 0.00 37.81 4.30
122 123 0.955428 TCACTTGATTGTGCGGAGGC 60.955 55.000 0.00 0.00 37.81 4.70
123 124 2.034879 ACTTGATTGTGCGGAGGCG 61.035 57.895 0.00 0.00 44.10 5.52
124 125 2.745884 TTGATTGTGCGGAGGCGG 60.746 61.111 0.00 0.00 44.10 6.13
125 126 3.545124 TTGATTGTGCGGAGGCGGT 62.545 57.895 0.00 0.00 44.10 5.68
126 127 3.499737 GATTGTGCGGAGGCGGTG 61.500 66.667 0.00 0.00 44.10 4.94
127 128 4.329545 ATTGTGCGGAGGCGGTGT 62.330 61.111 0.00 0.00 44.10 4.16
128 129 4.980805 TTGTGCGGAGGCGGTGTC 62.981 66.667 0.00 0.00 44.10 3.67
133 134 3.770040 CGGAGGCGGTGTCCATGA 61.770 66.667 0.00 0.00 33.14 3.07
134 135 2.911143 GGAGGCGGTGTCCATGAT 59.089 61.111 0.00 0.00 33.84 2.45
135 136 1.227674 GGAGGCGGTGTCCATGATC 60.228 63.158 0.00 0.00 33.84 2.92
136 137 1.522092 GAGGCGGTGTCCATGATCA 59.478 57.895 0.00 0.00 0.00 2.92
137 138 0.811616 GAGGCGGTGTCCATGATCAC 60.812 60.000 0.00 2.90 0.00 3.06
138 139 1.078497 GGCGGTGTCCATGATCACA 60.078 57.895 17.31 5.57 36.43 3.58
139 140 1.091771 GGCGGTGTCCATGATCACAG 61.092 60.000 17.31 15.05 36.43 3.66
140 141 1.709147 GCGGTGTCCATGATCACAGC 61.709 60.000 20.91 20.91 44.73 4.40
141 142 2.387309 GGTGTCCATGATCACAGCG 58.613 57.895 17.31 0.00 36.43 5.18
142 143 1.709147 GGTGTCCATGATCACAGCGC 61.709 60.000 17.31 0.00 36.43 5.92
143 144 1.020861 GTGTCCATGATCACAGCGCA 61.021 55.000 11.47 0.00 35.04 6.09
144 145 0.321475 TGTCCATGATCACAGCGCAA 60.321 50.000 11.47 0.00 0.00 4.85
145 146 0.376152 GTCCATGATCACAGCGCAAG 59.624 55.000 11.47 3.78 43.44 4.01
146 147 0.745486 TCCATGATCACAGCGCAAGG 60.745 55.000 11.47 0.14 38.28 3.61
147 148 0.745486 CCATGATCACAGCGCAAGGA 60.745 55.000 11.47 3.34 38.28 3.36
148 149 0.376152 CATGATCACAGCGCAAGGAC 59.624 55.000 11.47 0.00 38.28 3.85
149 150 0.036105 ATGATCACAGCGCAAGGACA 60.036 50.000 11.47 2.67 38.28 4.02
150 151 0.671472 TGATCACAGCGCAAGGACAG 60.671 55.000 11.47 0.00 38.28 3.51
151 152 1.364626 GATCACAGCGCAAGGACAGG 61.365 60.000 11.47 0.00 38.28 4.00
152 153 1.830587 ATCACAGCGCAAGGACAGGA 61.831 55.000 11.47 0.00 38.28 3.86
153 154 2.031163 ACAGCGCAAGGACAGGAC 59.969 61.111 11.47 0.00 38.28 3.85
154 155 2.743928 CAGCGCAAGGACAGGACC 60.744 66.667 11.47 0.00 38.28 4.46
155 156 4.379243 AGCGCAAGGACAGGACCG 62.379 66.667 11.47 0.00 38.28 4.79
157 158 4.003788 CGCAAGGACAGGACCGGT 62.004 66.667 6.92 6.92 34.73 5.28
158 159 2.047179 GCAAGGACAGGACCGGTC 60.047 66.667 27.04 27.04 34.73 4.79
159 160 2.261671 CAAGGACAGGACCGGTCG 59.738 66.667 27.68 17.53 36.12 4.79
160 161 2.995574 AAGGACAGGACCGGTCGG 60.996 66.667 27.68 23.36 42.03 4.79
170 171 4.221422 CCGGTCGGTCCATCGCAT 62.221 66.667 0.55 0.00 35.57 4.73
171 172 2.658593 CGGTCGGTCCATCGCATC 60.659 66.667 0.00 0.00 35.57 3.91
172 173 2.658593 GGTCGGTCCATCGCATCG 60.659 66.667 0.00 0.00 35.97 3.84
173 174 2.104331 GTCGGTCCATCGCATCGT 59.896 61.111 0.00 0.00 0.00 3.73
174 175 1.518572 GTCGGTCCATCGCATCGTT 60.519 57.895 0.00 0.00 0.00 3.85
175 176 1.518352 TCGGTCCATCGCATCGTTG 60.518 57.895 0.00 0.00 0.00 4.10
176 177 1.809619 CGGTCCATCGCATCGTTGT 60.810 57.895 0.00 0.00 0.00 3.32
177 178 1.752501 CGGTCCATCGCATCGTTGTC 61.753 60.000 0.00 0.00 0.00 3.18
178 179 1.631072 GTCCATCGCATCGTTGTCG 59.369 57.895 0.00 0.30 38.55 4.35
191 192 4.092771 TCGTTGTCGAGGACATTAAGAG 57.907 45.455 0.00 0.00 42.40 2.85
192 193 3.754850 TCGTTGTCGAGGACATTAAGAGA 59.245 43.478 0.00 0.00 42.40 3.10
193 194 3.852536 CGTTGTCGAGGACATTAAGAGAC 59.147 47.826 0.00 0.00 42.40 3.36
194 195 4.379603 CGTTGTCGAGGACATTAAGAGACT 60.380 45.833 0.00 0.00 42.40 3.24
195 196 5.163784 CGTTGTCGAGGACATTAAGAGACTA 60.164 44.000 0.00 0.00 42.40 2.59
196 197 6.259638 GTTGTCGAGGACATTAAGAGACTAG 58.740 44.000 0.00 0.00 42.40 2.57
197 198 5.498393 TGTCGAGGACATTAAGAGACTAGT 58.502 41.667 0.00 0.00 37.67 2.57
198 199 6.647229 TGTCGAGGACATTAAGAGACTAGTA 58.353 40.000 0.00 0.00 37.67 1.82
199 200 6.762187 TGTCGAGGACATTAAGAGACTAGTAG 59.238 42.308 0.00 0.00 37.67 2.57
200 201 5.759273 TCGAGGACATTAAGAGACTAGTAGC 59.241 44.000 0.00 0.00 0.00 3.58
201 202 5.333492 CGAGGACATTAAGAGACTAGTAGCG 60.333 48.000 0.00 0.00 0.00 4.26
202 203 5.682659 AGGACATTAAGAGACTAGTAGCGA 58.317 41.667 0.00 0.00 0.00 4.93
203 204 5.528320 AGGACATTAAGAGACTAGTAGCGAC 59.472 44.000 0.00 0.00 0.00 5.19
204 205 5.296283 GGACATTAAGAGACTAGTAGCGACA 59.704 44.000 0.00 0.00 0.00 4.35
205 206 6.366315 ACATTAAGAGACTAGTAGCGACAG 57.634 41.667 0.00 0.00 0.00 3.51
206 207 6.114089 ACATTAAGAGACTAGTAGCGACAGA 58.886 40.000 0.00 0.00 0.00 3.41
207 208 6.259167 ACATTAAGAGACTAGTAGCGACAGAG 59.741 42.308 0.00 0.00 0.00 3.35
208 209 3.188159 AGAGACTAGTAGCGACAGAGG 57.812 52.381 0.00 0.00 0.00 3.69
209 210 2.158871 AGAGACTAGTAGCGACAGAGGG 60.159 54.545 0.00 0.00 0.00 4.30
210 211 1.134037 AGACTAGTAGCGACAGAGGGG 60.134 57.143 0.00 0.00 0.00 4.79
211 212 0.917533 ACTAGTAGCGACAGAGGGGA 59.082 55.000 0.00 0.00 0.00 4.81
212 213 1.134037 ACTAGTAGCGACAGAGGGGAG 60.134 57.143 0.00 0.00 0.00 4.30
213 214 1.141254 CTAGTAGCGACAGAGGGGAGA 59.859 57.143 0.00 0.00 0.00 3.71
214 215 0.106918 AGTAGCGACAGAGGGGAGAG 60.107 60.000 0.00 0.00 0.00 3.20
215 216 0.107116 GTAGCGACAGAGGGGAGAGA 60.107 60.000 0.00 0.00 0.00 3.10
216 217 0.181587 TAGCGACAGAGGGGAGAGAG 59.818 60.000 0.00 0.00 0.00 3.20
217 218 2.124693 GCGACAGAGGGGAGAGAGG 61.125 68.421 0.00 0.00 0.00 3.69
218 219 1.304952 CGACAGAGGGGAGAGAGGT 59.695 63.158 0.00 0.00 0.00 3.85
219 220 0.750182 CGACAGAGGGGAGAGAGGTC 60.750 65.000 0.00 0.00 0.00 3.85
220 221 0.629058 GACAGAGGGGAGAGAGGTCT 59.371 60.000 0.00 0.00 34.86 3.85
237 238 8.384607 GAGAGGTCTCTTTTAATCTTTGTTGT 57.615 34.615 1.70 0.00 40.61 3.32
238 239 8.384607 AGAGGTCTCTTTTAATCTTTGTTGTC 57.615 34.615 0.00 0.00 36.31 3.18
239 240 7.171678 AGAGGTCTCTTTTAATCTTTGTTGTCG 59.828 37.037 0.00 0.00 36.31 4.35
240 241 6.766467 AGGTCTCTTTTAATCTTTGTTGTCGT 59.234 34.615 0.00 0.00 0.00 4.34
241 242 7.282450 AGGTCTCTTTTAATCTTTGTTGTCGTT 59.718 33.333 0.00 0.00 0.00 3.85
242 243 7.586664 GGTCTCTTTTAATCTTTGTTGTCGTTC 59.413 37.037 0.00 0.00 0.00 3.95
243 244 8.120465 GTCTCTTTTAATCTTTGTTGTCGTTCA 58.880 33.333 0.00 0.00 0.00 3.18
244 245 8.120465 TCTCTTTTAATCTTTGTTGTCGTTCAC 58.880 33.333 0.00 0.00 0.00 3.18
245 246 7.753659 TCTTTTAATCTTTGTTGTCGTTCACA 58.246 30.769 0.00 0.00 0.00 3.58
246 247 7.908082 TCTTTTAATCTTTGTTGTCGTTCACAG 59.092 33.333 0.00 0.00 35.97 3.66
247 248 6.912203 TTAATCTTTGTTGTCGTTCACAGA 57.088 33.333 0.00 0.00 35.97 3.41
248 249 5.811399 AATCTTTGTTGTCGTTCACAGAA 57.189 34.783 0.00 0.00 35.97 3.02
249 250 4.593597 TCTTTGTTGTCGTTCACAGAAC 57.406 40.909 0.00 0.00 35.97 3.01
250 251 3.997681 TCTTTGTTGTCGTTCACAGAACA 59.002 39.130 10.15 0.00 35.97 3.18
251 252 4.452795 TCTTTGTTGTCGTTCACAGAACAA 59.547 37.500 10.15 0.00 35.02 2.83
252 253 4.750952 TTGTTGTCGTTCACAGAACAAA 57.249 36.364 10.15 0.00 34.26 2.83
253 254 4.335082 TGTTGTCGTTCACAGAACAAAG 57.665 40.909 10.15 0.00 35.97 2.77
254 255 3.749088 TGTTGTCGTTCACAGAACAAAGT 59.251 39.130 10.15 0.00 35.97 2.66
255 256 4.214545 TGTTGTCGTTCACAGAACAAAGTT 59.785 37.500 10.15 0.00 35.97 2.66
256 257 5.408909 TGTTGTCGTTCACAGAACAAAGTTA 59.591 36.000 10.15 0.00 35.97 2.24
257 258 5.712217 TGTCGTTCACAGAACAAAGTTAG 57.288 39.130 10.15 0.00 0.00 2.34
258 259 5.172934 TGTCGTTCACAGAACAAAGTTAGT 58.827 37.500 10.15 0.00 0.00 2.24
259 260 5.640357 TGTCGTTCACAGAACAAAGTTAGTT 59.360 36.000 10.15 0.00 0.00 2.24
260 261 6.812656 TGTCGTTCACAGAACAAAGTTAGTTA 59.187 34.615 10.15 0.00 0.00 2.24
261 262 7.493320 TGTCGTTCACAGAACAAAGTTAGTTAT 59.507 33.333 10.15 0.00 0.00 1.89
262 263 7.792508 GTCGTTCACAGAACAAAGTTAGTTATG 59.207 37.037 10.15 0.00 42.25 1.90
263 264 7.707464 TCGTTCACAGAACAAAGTTAGTTATGA 59.293 33.333 10.15 0.00 39.78 2.15
264 265 8.004344 CGTTCACAGAACAAAGTTAGTTATGAG 58.996 37.037 10.15 0.62 39.78 2.90
265 266 7.421530 TCACAGAACAAAGTTAGTTATGAGC 57.578 36.000 7.56 0.00 39.78 4.26
266 267 7.217200 TCACAGAACAAAGTTAGTTATGAGCT 58.783 34.615 7.56 0.00 39.78 4.09
267 268 7.385205 TCACAGAACAAAGTTAGTTATGAGCTC 59.615 37.037 6.82 6.82 39.78 4.09
268 269 6.366332 ACAGAACAAAGTTAGTTATGAGCTCG 59.634 38.462 9.64 0.00 39.78 5.03
269 270 5.348997 AGAACAAAGTTAGTTATGAGCTCGC 59.651 40.000 9.64 0.00 0.00 5.03
270 271 3.933332 ACAAAGTTAGTTATGAGCTCGCC 59.067 43.478 9.64 0.00 0.00 5.54
271 272 3.887621 AAGTTAGTTATGAGCTCGCCA 57.112 42.857 9.64 0.00 0.00 5.69
272 273 3.887621 AGTTAGTTATGAGCTCGCCAA 57.112 42.857 9.64 0.00 0.00 4.52
273 274 3.786635 AGTTAGTTATGAGCTCGCCAAG 58.213 45.455 9.64 0.00 0.00 3.61
274 275 3.195825 AGTTAGTTATGAGCTCGCCAAGT 59.804 43.478 9.64 8.10 0.00 3.16
275 276 4.401519 AGTTAGTTATGAGCTCGCCAAGTA 59.598 41.667 9.64 7.15 0.00 2.24
276 277 5.069251 AGTTAGTTATGAGCTCGCCAAGTAT 59.931 40.000 9.64 0.00 0.00 2.12
277 278 3.722147 AGTTATGAGCTCGCCAAGTATG 58.278 45.455 9.64 0.00 0.00 2.39
289 290 3.914426 CCAAGTATGGTAGGAGCACTT 57.086 47.619 0.00 0.00 42.18 3.16
290 291 3.798202 CCAAGTATGGTAGGAGCACTTC 58.202 50.000 0.00 0.00 42.18 3.01
291 292 3.432326 CCAAGTATGGTAGGAGCACTTCC 60.432 52.174 0.00 0.00 43.21 3.46
292 293 6.496671 CCAAGTATGGTAGGAGCACTTCCC 62.497 54.167 2.46 0.00 43.58 3.97
298 299 4.329545 GGAGCACTTCCCGCACCA 62.330 66.667 0.00 0.00 40.37 4.17
299 300 3.050275 GAGCACTTCCCGCACCAC 61.050 66.667 0.00 0.00 0.00 4.16
300 301 3.537206 GAGCACTTCCCGCACCACT 62.537 63.158 0.00 0.00 0.00 4.00
301 302 3.357079 GCACTTCCCGCACCACTG 61.357 66.667 0.00 0.00 0.00 3.66
302 303 2.111043 CACTTCCCGCACCACTGT 59.889 61.111 0.00 0.00 0.00 3.55
303 304 1.525995 CACTTCCCGCACCACTGTT 60.526 57.895 0.00 0.00 0.00 3.16
304 305 1.101049 CACTTCCCGCACCACTGTTT 61.101 55.000 0.00 0.00 0.00 2.83
305 306 0.470766 ACTTCCCGCACCACTGTTTA 59.529 50.000 0.00 0.00 0.00 2.01
306 307 1.156736 CTTCCCGCACCACTGTTTAG 58.843 55.000 0.00 0.00 0.00 1.85
307 308 0.470766 TTCCCGCACCACTGTTTAGT 59.529 50.000 0.00 0.00 37.75 2.24
308 309 0.470766 TCCCGCACCACTGTTTAGTT 59.529 50.000 0.00 0.00 34.07 2.24
309 310 0.591170 CCCGCACCACTGTTTAGTTG 59.409 55.000 0.00 0.00 34.07 3.16
310 311 0.040425 CCGCACCACTGTTTAGTTGC 60.040 55.000 0.00 0.00 37.33 4.17
311 312 0.660488 CGCACCACTGTTTAGTTGCA 59.340 50.000 0.00 0.00 39.51 4.08
312 313 1.596954 CGCACCACTGTTTAGTTGCAC 60.597 52.381 0.00 0.00 39.51 4.57
313 314 1.676006 GCACCACTGTTTAGTTGCACT 59.324 47.619 0.00 0.00 39.40 4.40
314 315 2.287009 GCACCACTGTTTAGTTGCACTC 60.287 50.000 0.00 0.00 39.40 3.51
315 316 2.032894 CACCACTGTTTAGTTGCACTCG 60.033 50.000 0.00 0.00 34.07 4.18
316 317 1.531149 CCACTGTTTAGTTGCACTCGG 59.469 52.381 0.00 0.00 34.07 4.63
317 318 1.531149 CACTGTTTAGTTGCACTCGGG 59.469 52.381 0.00 0.00 34.07 5.14
318 319 1.414919 ACTGTTTAGTTGCACTCGGGA 59.585 47.619 0.00 0.00 31.66 5.14
319 320 2.038557 ACTGTTTAGTTGCACTCGGGAT 59.961 45.455 0.00 0.00 31.66 3.85
320 321 3.074412 CTGTTTAGTTGCACTCGGGATT 58.926 45.455 0.00 0.00 0.00 3.01
321 322 4.250464 CTGTTTAGTTGCACTCGGGATTA 58.750 43.478 0.00 0.00 0.00 1.75
322 323 4.250464 TGTTTAGTTGCACTCGGGATTAG 58.750 43.478 0.00 0.00 0.00 1.73
323 324 4.020928 TGTTTAGTTGCACTCGGGATTAGA 60.021 41.667 0.00 0.00 0.00 2.10
324 325 2.674796 AGTTGCACTCGGGATTAGAC 57.325 50.000 0.00 0.00 0.00 2.59
325 326 1.207329 AGTTGCACTCGGGATTAGACC 59.793 52.381 0.00 0.00 0.00 3.85
326 327 1.207329 GTTGCACTCGGGATTAGACCT 59.793 52.381 0.00 0.00 0.00 3.85
327 328 1.112113 TGCACTCGGGATTAGACCTC 58.888 55.000 0.00 0.00 0.00 3.85
328 329 1.112113 GCACTCGGGATTAGACCTCA 58.888 55.000 0.00 0.00 0.00 3.86
329 330 1.689273 GCACTCGGGATTAGACCTCAT 59.311 52.381 0.00 0.00 0.00 2.90
330 331 2.103263 GCACTCGGGATTAGACCTCATT 59.897 50.000 0.00 0.00 0.00 2.57
331 332 3.722147 CACTCGGGATTAGACCTCATTG 58.278 50.000 0.00 0.00 0.00 2.82
332 333 3.133003 CACTCGGGATTAGACCTCATTGT 59.867 47.826 0.00 0.00 0.00 2.71
333 334 3.775316 ACTCGGGATTAGACCTCATTGTT 59.225 43.478 0.00 0.00 0.00 2.83
334 335 4.122776 CTCGGGATTAGACCTCATTGTTG 58.877 47.826 0.00 0.00 0.00 3.33
335 336 3.772572 TCGGGATTAGACCTCATTGTTGA 59.227 43.478 0.00 0.00 0.00 3.18
346 347 2.426522 TCATTGTTGAGAAAGCCTCCG 58.573 47.619 0.00 0.00 41.25 4.63
347 348 2.154462 CATTGTTGAGAAAGCCTCCGT 58.846 47.619 0.00 0.00 41.25 4.69
348 349 1.593196 TTGTTGAGAAAGCCTCCGTG 58.407 50.000 0.00 0.00 41.25 4.94
349 350 0.756294 TGTTGAGAAAGCCTCCGTGA 59.244 50.000 0.00 0.00 41.25 4.35
350 351 1.270305 TGTTGAGAAAGCCTCCGTGAG 60.270 52.381 0.00 0.00 41.25 3.51
351 352 1.048601 TTGAGAAAGCCTCCGTGAGT 58.951 50.000 0.00 0.00 41.25 3.41
352 353 1.919240 TGAGAAAGCCTCCGTGAGTA 58.081 50.000 0.00 0.00 41.25 2.59
353 354 2.244695 TGAGAAAGCCTCCGTGAGTAA 58.755 47.619 0.00 0.00 41.25 2.24
354 355 2.832129 TGAGAAAGCCTCCGTGAGTAAT 59.168 45.455 0.00 0.00 41.25 1.89
355 356 3.190874 GAGAAAGCCTCCGTGAGTAATG 58.809 50.000 1.12 0.00 35.87 1.90
356 357 2.832129 AGAAAGCCTCCGTGAGTAATGA 59.168 45.455 1.12 0.00 0.00 2.57
357 358 2.969628 AAGCCTCCGTGAGTAATGAG 57.030 50.000 1.12 0.00 0.00 2.90
358 359 2.145397 AGCCTCCGTGAGTAATGAGA 57.855 50.000 0.00 0.00 0.00 3.27
359 360 2.457598 AGCCTCCGTGAGTAATGAGAA 58.542 47.619 0.00 0.00 0.00 2.87
360 361 2.832129 AGCCTCCGTGAGTAATGAGAAA 59.168 45.455 0.00 0.00 0.00 2.52
361 362 3.452627 AGCCTCCGTGAGTAATGAGAAAT 59.547 43.478 0.00 0.00 0.00 2.17
362 363 3.804873 GCCTCCGTGAGTAATGAGAAATC 59.195 47.826 0.00 0.00 0.00 2.17
363 364 4.442192 GCCTCCGTGAGTAATGAGAAATCT 60.442 45.833 0.00 0.00 0.00 2.40
364 365 5.285651 CCTCCGTGAGTAATGAGAAATCTC 58.714 45.833 3.43 3.43 43.15 2.75
365 366 5.068460 CCTCCGTGAGTAATGAGAAATCTCT 59.932 44.000 11.45 0.00 43.25 3.10
366 367 6.406400 CCTCCGTGAGTAATGAGAAATCTCTT 60.406 42.308 11.45 2.78 43.25 2.85
367 368 6.936279 TCCGTGAGTAATGAGAAATCTCTTT 58.064 36.000 11.45 12.80 43.25 2.52
368 369 7.386851 TCCGTGAGTAATGAGAAATCTCTTTT 58.613 34.615 14.42 9.51 43.25 2.27
369 370 7.545965 TCCGTGAGTAATGAGAAATCTCTTTTC 59.454 37.037 14.42 10.65 43.25 2.29
370 371 7.331934 CCGTGAGTAATGAGAAATCTCTTTTCA 59.668 37.037 14.42 11.08 45.19 2.69
371 372 8.165428 CGTGAGTAATGAGAAATCTCTTTTCAC 58.835 37.037 20.58 20.58 45.19 3.18
372 373 8.447053 GTGAGTAATGAGAAATCTCTTTTCACC 58.553 37.037 20.23 12.14 45.19 4.02
373 374 8.378565 TGAGTAATGAGAAATCTCTTTTCACCT 58.621 33.333 14.42 7.80 45.19 4.00
374 375 8.558973 AGTAATGAGAAATCTCTTTTCACCTG 57.441 34.615 14.42 0.00 45.19 4.00
375 376 5.893897 ATGAGAAATCTCTTTTCACCTGC 57.106 39.130 11.45 0.00 45.19 4.85
376 377 4.717877 TGAGAAATCTCTTTTCACCTGCA 58.282 39.130 11.45 0.00 45.19 4.41
377 378 5.132502 TGAGAAATCTCTTTTCACCTGCAA 58.867 37.500 11.45 0.00 45.19 4.08
378 379 5.593909 TGAGAAATCTCTTTTCACCTGCAAA 59.406 36.000 11.45 0.00 45.19 3.68
379 380 6.096705 TGAGAAATCTCTTTTCACCTGCAAAA 59.903 34.615 11.45 0.00 45.19 2.44
380 381 6.877236 AGAAATCTCTTTTCACCTGCAAAAA 58.123 32.000 0.00 0.00 45.19 1.94
421 422 8.586570 TGAGCATTCACAAAATTTTTACGATT 57.413 26.923 0.00 0.00 0.00 3.34
422 423 9.039870 TGAGCATTCACAAAATTTTTACGATTT 57.960 25.926 0.00 0.00 0.00 2.17
423 424 9.862585 GAGCATTCACAAAATTTTTACGATTTT 57.137 25.926 0.00 0.00 37.22 1.82
468 469 5.341872 TTTTCCGAATTGGTATCGTAGGA 57.658 39.130 0.00 0.00 38.60 2.94
469 470 4.579454 TTCCGAATTGGTATCGTAGGAG 57.421 45.455 0.00 0.00 38.60 3.69
554 555 1.599047 CGTTCCTGCTCCAGTCCAT 59.401 57.895 0.00 0.00 0.00 3.41
1081 1115 2.683933 ATCCTCGCCGACAAGGGT 60.684 61.111 0.00 0.00 41.48 4.34
1111 1145 4.047059 GTCCTCGTCAACCGCCGA 62.047 66.667 0.00 0.00 36.19 5.54
1397 1439 1.811266 GGTGCGTGCAGATCATCGT 60.811 57.895 0.00 0.00 0.00 3.73
1487 1532 1.000233 CCCCTAATGGCACCTGCAA 60.000 57.895 0.00 0.00 44.36 4.08
1601 1655 0.915364 AAGGTGCCTCATCTCCCTTC 59.085 55.000 0.00 0.00 29.62 3.46
1784 1862 2.159707 CGTTTCGAAGTCCGCAATGATT 60.160 45.455 0.00 0.00 33.31 2.57
1855 1933 0.253160 ACATCAAGGTGAGGCCCCTA 60.253 55.000 0.00 0.00 38.26 3.53
1881 1959 0.177141 CCATTGGCCTCCATTTGCAG 59.823 55.000 3.32 0.00 31.53 4.41
2023 2138 1.597742 GCAAGCTGAACCTGAAGTCA 58.402 50.000 0.00 0.00 0.00 3.41
2191 2309 2.044946 GCTGCCCCCAGTTCGATT 60.045 61.111 0.00 0.00 41.26 3.34
2546 2686 4.512944 CAGATTTTCACACCGGATATGGAG 59.487 45.833 9.46 0.00 0.00 3.86
2556 2696 1.942657 CGGATATGGAGTGGTGCTTTG 59.057 52.381 0.00 0.00 0.00 2.77
2589 2729 1.737838 TGGTTTCTCCAATAGCTGCG 58.262 50.000 0.00 0.00 44.12 5.18
2639 2779 3.990369 AGATAGCCACCTAGGTGTAACA 58.010 45.455 34.49 19.75 44.02 2.41
2643 2783 1.900486 GCCACCTAGGTGTAACAGTCT 59.100 52.381 34.49 0.00 44.02 3.24
2755 2896 9.981460 ATCTTGAAAGGTGTTAGATTAAATCCT 57.019 29.630 0.00 0.00 0.00 3.24
2788 2929 6.660887 AATGCAAACCCTAATTTAAATGCG 57.339 33.333 0.39 0.00 35.40 4.73
2789 2930 5.392767 TGCAAACCCTAATTTAAATGCGA 57.607 34.783 0.39 0.00 35.40 5.10
2852 2993 9.739276 ATTGAGAGACTTTAACATGGTGAAATA 57.261 29.630 0.00 0.00 0.00 1.40
2880 3021 5.630264 CGAAACCATAGTTTTAAAAACCGGG 59.370 40.000 6.32 5.46 46.25 5.73
2925 3067 0.593128 CCGAAGCCTTGTCCAGTTTG 59.407 55.000 0.00 0.00 0.00 2.93
2929 3071 3.058914 CGAAGCCTTGTCCAGTTTGTAAG 60.059 47.826 0.00 0.00 0.00 2.34
2938 3080 3.066203 GTCCAGTTTGTAAGGTGTGTTGG 59.934 47.826 0.00 0.00 0.00 3.77
2947 3089 5.991861 TGTAAGGTGTGTTGGTCTTTTAGA 58.008 37.500 0.00 0.00 0.00 2.10
2948 3090 5.818857 TGTAAGGTGTGTTGGTCTTTTAGAC 59.181 40.000 0.00 0.00 44.32 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.571792 CCCAAATTCACTATTCCTTGGGGA 60.572 45.833 9.41 0.00 37.82 4.81
7 8 3.706086 CCCAAATTCACTATTCCTTGGGG 59.294 47.826 9.41 0.00 37.82 4.96
8 9 3.706086 CCCCAAATTCACTATTCCTTGGG 59.294 47.826 10.18 10.18 39.81 4.12
9 10 4.609301 TCCCCAAATTCACTATTCCTTGG 58.391 43.478 0.00 0.00 0.00 3.61
10 11 7.896383 TTATCCCCAAATTCACTATTCCTTG 57.104 36.000 0.00 0.00 0.00 3.61
11 12 8.909423 TTTTATCCCCAAATTCACTATTCCTT 57.091 30.769 0.00 0.00 0.00 3.36
12 13 9.147732 GATTTTATCCCCAAATTCACTATTCCT 57.852 33.333 0.00 0.00 0.00 3.36
13 14 8.367911 GGATTTTATCCCCAAATTCACTATTCC 58.632 37.037 0.00 0.00 43.88 3.01
30 31 5.067805 GTGAGTTGGGGATGTGGATTTTATC 59.932 44.000 0.00 0.00 0.00 1.75
31 32 4.956075 GTGAGTTGGGGATGTGGATTTTAT 59.044 41.667 0.00 0.00 0.00 1.40
32 33 4.044065 AGTGAGTTGGGGATGTGGATTTTA 59.956 41.667 0.00 0.00 0.00 1.52
33 34 3.165071 GTGAGTTGGGGATGTGGATTTT 58.835 45.455 0.00 0.00 0.00 1.82
34 35 2.379907 AGTGAGTTGGGGATGTGGATTT 59.620 45.455 0.00 0.00 0.00 2.17
35 36 1.995542 AGTGAGTTGGGGATGTGGATT 59.004 47.619 0.00 0.00 0.00 3.01
36 37 1.673767 AGTGAGTTGGGGATGTGGAT 58.326 50.000 0.00 0.00 0.00 3.41
37 38 1.444933 AAGTGAGTTGGGGATGTGGA 58.555 50.000 0.00 0.00 0.00 4.02
38 39 3.282021 CATAAGTGAGTTGGGGATGTGG 58.718 50.000 0.00 0.00 0.00 4.17
39 40 2.684881 GCATAAGTGAGTTGGGGATGTG 59.315 50.000 0.00 0.00 0.00 3.21
40 41 2.578021 AGCATAAGTGAGTTGGGGATGT 59.422 45.455 0.00 0.00 0.00 3.06
41 42 3.287867 AGCATAAGTGAGTTGGGGATG 57.712 47.619 0.00 0.00 0.00 3.51
42 43 5.450818 TTAAGCATAAGTGAGTTGGGGAT 57.549 39.130 0.00 0.00 0.00 3.85
43 44 4.919774 TTAAGCATAAGTGAGTTGGGGA 57.080 40.909 0.00 0.00 0.00 4.81
44 45 4.580580 GGATTAAGCATAAGTGAGTTGGGG 59.419 45.833 0.00 0.00 0.00 4.96
45 46 5.440610 AGGATTAAGCATAAGTGAGTTGGG 58.559 41.667 0.00 0.00 0.00 4.12
46 47 6.038714 GGAAGGATTAAGCATAAGTGAGTTGG 59.961 42.308 0.00 0.00 0.00 3.77
47 48 6.038714 GGGAAGGATTAAGCATAAGTGAGTTG 59.961 42.308 0.00 0.00 0.00 3.16
48 49 6.122964 GGGAAGGATTAAGCATAAGTGAGTT 58.877 40.000 0.00 0.00 0.00 3.01
49 50 5.398012 GGGGAAGGATTAAGCATAAGTGAGT 60.398 44.000 0.00 0.00 0.00 3.41
50 51 5.066593 GGGGAAGGATTAAGCATAAGTGAG 58.933 45.833 0.00 0.00 0.00 3.51
51 52 4.444306 CGGGGAAGGATTAAGCATAAGTGA 60.444 45.833 0.00 0.00 0.00 3.41
52 53 3.815401 CGGGGAAGGATTAAGCATAAGTG 59.185 47.826 0.00 0.00 0.00 3.16
53 54 3.714798 TCGGGGAAGGATTAAGCATAAGT 59.285 43.478 0.00 0.00 0.00 2.24
54 55 4.065789 GTCGGGGAAGGATTAAGCATAAG 58.934 47.826 0.00 0.00 0.00 1.73
55 56 3.714798 AGTCGGGGAAGGATTAAGCATAA 59.285 43.478 0.00 0.00 0.00 1.90
56 57 3.314693 AGTCGGGGAAGGATTAAGCATA 58.685 45.455 0.00 0.00 0.00 3.14
57 58 2.104963 GAGTCGGGGAAGGATTAAGCAT 59.895 50.000 0.00 0.00 0.00 3.79
58 59 1.485066 GAGTCGGGGAAGGATTAAGCA 59.515 52.381 0.00 0.00 0.00 3.91
59 60 1.485066 TGAGTCGGGGAAGGATTAAGC 59.515 52.381 0.00 0.00 0.00 3.09
60 61 2.766828 AGTGAGTCGGGGAAGGATTAAG 59.233 50.000 0.00 0.00 0.00 1.85
61 62 2.829023 AGTGAGTCGGGGAAGGATTAA 58.171 47.619 0.00 0.00 0.00 1.40
62 63 2.544844 AGTGAGTCGGGGAAGGATTA 57.455 50.000 0.00 0.00 0.00 1.75
63 64 1.657804 AAGTGAGTCGGGGAAGGATT 58.342 50.000 0.00 0.00 0.00 3.01
64 65 2.544844 TAAGTGAGTCGGGGAAGGAT 57.455 50.000 0.00 0.00 0.00 3.24
65 66 2.544844 ATAAGTGAGTCGGGGAAGGA 57.455 50.000 0.00 0.00 0.00 3.36
66 67 3.297736 AGTATAAGTGAGTCGGGGAAGG 58.702 50.000 0.00 0.00 0.00 3.46
67 68 4.401519 TCAAGTATAAGTGAGTCGGGGAAG 59.598 45.833 0.00 0.00 0.00 3.46
68 69 4.346730 TCAAGTATAAGTGAGTCGGGGAA 58.653 43.478 0.00 0.00 0.00 3.97
69 70 3.972133 TCAAGTATAAGTGAGTCGGGGA 58.028 45.455 0.00 0.00 0.00 4.81
70 71 4.262079 GGATCAAGTATAAGTGAGTCGGGG 60.262 50.000 0.00 0.00 0.00 5.73
71 72 4.585162 AGGATCAAGTATAAGTGAGTCGGG 59.415 45.833 0.00 0.00 0.00 5.14
72 73 5.776173 AGGATCAAGTATAAGTGAGTCGG 57.224 43.478 0.00 0.00 0.00 4.79
73 74 6.210078 GGAAGGATCAAGTATAAGTGAGTCG 58.790 44.000 0.00 0.00 0.00 4.18
74 75 6.463190 GGGGAAGGATCAAGTATAAGTGAGTC 60.463 46.154 0.00 0.00 0.00 3.36
75 76 5.367060 GGGGAAGGATCAAGTATAAGTGAGT 59.633 44.000 0.00 0.00 0.00 3.41
76 77 5.509840 CGGGGAAGGATCAAGTATAAGTGAG 60.510 48.000 0.00 0.00 0.00 3.51
77 78 4.344102 CGGGGAAGGATCAAGTATAAGTGA 59.656 45.833 0.00 0.00 0.00 3.41
78 79 4.344102 TCGGGGAAGGATCAAGTATAAGTG 59.656 45.833 0.00 0.00 0.00 3.16
79 80 4.344390 GTCGGGGAAGGATCAAGTATAAGT 59.656 45.833 0.00 0.00 0.00 2.24
80 81 4.589374 AGTCGGGGAAGGATCAAGTATAAG 59.411 45.833 0.00 0.00 0.00 1.73
81 82 4.553678 AGTCGGGGAAGGATCAAGTATAA 58.446 43.478 0.00 0.00 0.00 0.98
82 83 4.150359 GAGTCGGGGAAGGATCAAGTATA 58.850 47.826 0.00 0.00 0.00 1.47
83 84 2.966516 GAGTCGGGGAAGGATCAAGTAT 59.033 50.000 0.00 0.00 0.00 2.12
84 85 2.291996 TGAGTCGGGGAAGGATCAAGTA 60.292 50.000 0.00 0.00 0.00 2.24
85 86 1.196012 GAGTCGGGGAAGGATCAAGT 58.804 55.000 0.00 0.00 0.00 3.16
86 87 1.134670 GTGAGTCGGGGAAGGATCAAG 60.135 57.143 0.00 0.00 0.00 3.02
87 88 0.902531 GTGAGTCGGGGAAGGATCAA 59.097 55.000 0.00 0.00 0.00 2.57
88 89 0.041238 AGTGAGTCGGGGAAGGATCA 59.959 55.000 0.00 0.00 0.00 2.92
89 90 1.134670 CAAGTGAGTCGGGGAAGGATC 60.135 57.143 0.00 0.00 0.00 3.36
90 91 0.905357 CAAGTGAGTCGGGGAAGGAT 59.095 55.000 0.00 0.00 0.00 3.24
91 92 0.178944 TCAAGTGAGTCGGGGAAGGA 60.179 55.000 0.00 0.00 0.00 3.36
92 93 0.905357 ATCAAGTGAGTCGGGGAAGG 59.095 55.000 0.00 0.00 0.00 3.46
93 94 2.289694 ACAATCAAGTGAGTCGGGGAAG 60.290 50.000 0.00 0.00 0.00 3.46
94 95 1.697432 ACAATCAAGTGAGTCGGGGAA 59.303 47.619 0.00 0.00 0.00 3.97
95 96 1.001974 CACAATCAAGTGAGTCGGGGA 59.998 52.381 0.00 0.00 42.05 4.81
96 97 1.442769 CACAATCAAGTGAGTCGGGG 58.557 55.000 0.00 0.00 42.05 5.73
97 98 0.798776 GCACAATCAAGTGAGTCGGG 59.201 55.000 0.00 0.00 42.05 5.14
98 99 0.439985 CGCACAATCAAGTGAGTCGG 59.560 55.000 0.00 0.00 42.05 4.79
99 100 0.439985 CCGCACAATCAAGTGAGTCG 59.560 55.000 0.00 0.00 42.05 4.18
100 101 1.728971 CTCCGCACAATCAAGTGAGTC 59.271 52.381 0.00 0.00 42.05 3.36
101 102 1.609061 CCTCCGCACAATCAAGTGAGT 60.609 52.381 0.00 0.00 42.05 3.41
102 103 1.081892 CCTCCGCACAATCAAGTGAG 58.918 55.000 0.00 0.00 42.05 3.51
103 104 0.955428 GCCTCCGCACAATCAAGTGA 60.955 55.000 0.00 0.00 42.05 3.41
104 105 1.503542 GCCTCCGCACAATCAAGTG 59.496 57.895 0.00 0.00 42.37 3.16
105 106 2.034879 CGCCTCCGCACAATCAAGT 61.035 57.895 0.00 0.00 34.03 3.16
106 107 2.753966 CCGCCTCCGCACAATCAAG 61.754 63.158 0.00 0.00 34.03 3.02
107 108 2.745884 CCGCCTCCGCACAATCAA 60.746 61.111 0.00 0.00 34.03 2.57
108 109 4.015406 ACCGCCTCCGCACAATCA 62.015 61.111 0.00 0.00 34.03 2.57
109 110 3.499737 CACCGCCTCCGCACAATC 61.500 66.667 0.00 0.00 34.03 2.67
110 111 4.329545 ACACCGCCTCCGCACAAT 62.330 61.111 0.00 0.00 34.03 2.71
111 112 4.980805 GACACCGCCTCCGCACAA 62.981 66.667 0.00 0.00 34.03 3.33
116 117 2.978452 GATCATGGACACCGCCTCCG 62.978 65.000 0.00 0.00 0.00 4.63
117 118 1.227674 GATCATGGACACCGCCTCC 60.228 63.158 0.00 0.00 0.00 4.30
118 119 0.811616 GTGATCATGGACACCGCCTC 60.812 60.000 0.00 0.00 0.00 4.70
119 120 1.221840 GTGATCATGGACACCGCCT 59.778 57.895 0.00 0.00 0.00 5.52
120 121 1.078497 TGTGATCATGGACACCGCC 60.078 57.895 16.23 0.00 36.35 6.13
121 122 1.709147 GCTGTGATCATGGACACCGC 61.709 60.000 17.41 17.41 39.20 5.68
122 123 1.423721 CGCTGTGATCATGGACACCG 61.424 60.000 16.23 12.59 36.35 4.94
123 124 1.709147 GCGCTGTGATCATGGACACC 61.709 60.000 16.23 5.55 36.35 4.16
124 125 1.020861 TGCGCTGTGATCATGGACAC 61.021 55.000 9.73 13.47 37.51 3.67
125 126 0.321475 TTGCGCTGTGATCATGGACA 60.321 50.000 9.73 0.00 0.00 4.02
126 127 0.376152 CTTGCGCTGTGATCATGGAC 59.624 55.000 9.73 0.00 0.00 4.02
127 128 0.745486 CCTTGCGCTGTGATCATGGA 60.745 55.000 9.73 0.00 0.00 3.41
128 129 0.745486 TCCTTGCGCTGTGATCATGG 60.745 55.000 9.73 0.00 0.00 3.66
129 130 0.376152 GTCCTTGCGCTGTGATCATG 59.624 55.000 9.73 0.00 0.00 3.07
130 131 0.036105 TGTCCTTGCGCTGTGATCAT 60.036 50.000 9.73 0.00 0.00 2.45
131 132 0.671472 CTGTCCTTGCGCTGTGATCA 60.671 55.000 9.73 0.00 0.00 2.92
132 133 1.364626 CCTGTCCTTGCGCTGTGATC 61.365 60.000 9.73 0.00 0.00 2.92
133 134 1.376424 CCTGTCCTTGCGCTGTGAT 60.376 57.895 9.73 0.00 0.00 3.06
134 135 2.031012 CCTGTCCTTGCGCTGTGA 59.969 61.111 9.73 0.00 0.00 3.58
135 136 2.031012 TCCTGTCCTTGCGCTGTG 59.969 61.111 9.73 0.00 0.00 3.66
136 137 2.031163 GTCCTGTCCTTGCGCTGT 59.969 61.111 9.73 0.00 0.00 4.40
137 138 2.743928 GGTCCTGTCCTTGCGCTG 60.744 66.667 9.73 0.76 0.00 5.18
138 139 4.379243 CGGTCCTGTCCTTGCGCT 62.379 66.667 9.73 0.00 0.00 5.92
140 141 3.934391 GACCGGTCCTGTCCTTGCG 62.934 68.421 24.75 0.00 0.00 4.85
141 142 2.047179 GACCGGTCCTGTCCTTGC 60.047 66.667 24.75 0.00 0.00 4.01
142 143 2.261671 CGACCGGTCCTGTCCTTG 59.738 66.667 28.52 8.24 0.00 3.61
143 144 2.995574 CCGACCGGTCCTGTCCTT 60.996 66.667 28.52 0.00 0.00 3.36
153 154 4.221422 ATGCGATGGACCGACCGG 62.221 66.667 6.94 6.94 42.61 5.28
154 155 2.658593 GATGCGATGGACCGACCG 60.659 66.667 0.00 0.00 42.61 4.79
155 156 2.658593 CGATGCGATGGACCGACC 60.659 66.667 0.00 0.00 39.54 4.79
156 157 1.518572 AACGATGCGATGGACCGAC 60.519 57.895 0.00 0.00 0.00 4.79
157 158 1.518352 CAACGATGCGATGGACCGA 60.518 57.895 0.00 0.00 0.00 4.69
158 159 1.752501 GACAACGATGCGATGGACCG 61.753 60.000 0.00 0.00 34.07 4.79
159 160 1.752501 CGACAACGATGCGATGGACC 61.753 60.000 4.07 0.00 42.66 4.46
160 161 0.800683 TCGACAACGATGCGATGGAC 60.801 55.000 7.80 0.00 43.81 4.02
161 162 1.509004 TCGACAACGATGCGATGGA 59.491 52.632 7.80 0.00 43.81 3.41
162 163 4.086860 TCGACAACGATGCGATGG 57.913 55.556 7.80 0.00 43.81 3.51
164 165 4.409261 ATGTCCTCGACAACGATGCGAT 62.409 50.000 11.22 0.00 45.96 4.58
165 166 3.145480 ATGTCCTCGACAACGATGCGA 62.145 52.381 10.56 10.56 45.96 5.10
166 167 0.802222 ATGTCCTCGACAACGATGCG 60.802 55.000 0.00 0.00 45.96 4.73
167 168 1.359848 AATGTCCTCGACAACGATGC 58.640 50.000 0.00 0.00 45.96 3.91
168 169 4.421058 TCTTAATGTCCTCGACAACGATG 58.579 43.478 0.00 0.00 45.96 3.84
169 170 4.398358 TCTCTTAATGTCCTCGACAACGAT 59.602 41.667 0.00 0.00 45.96 3.73
170 171 3.754850 TCTCTTAATGTCCTCGACAACGA 59.245 43.478 0.00 0.00 45.96 3.85
171 172 3.852536 GTCTCTTAATGTCCTCGACAACG 59.147 47.826 0.00 0.00 45.96 4.10
172 173 5.061920 AGTCTCTTAATGTCCTCGACAAC 57.938 43.478 0.00 0.00 45.96 3.32
173 174 5.944599 ACTAGTCTCTTAATGTCCTCGACAA 59.055 40.000 0.00 0.00 45.96 3.18
174 175 5.498393 ACTAGTCTCTTAATGTCCTCGACA 58.502 41.667 0.00 0.00 46.90 4.35
175 176 6.293027 GCTACTAGTCTCTTAATGTCCTCGAC 60.293 46.154 0.00 0.00 0.00 4.20
176 177 5.759273 GCTACTAGTCTCTTAATGTCCTCGA 59.241 44.000 0.00 0.00 0.00 4.04
177 178 5.333492 CGCTACTAGTCTCTTAATGTCCTCG 60.333 48.000 0.00 0.00 0.00 4.63
178 179 5.759273 TCGCTACTAGTCTCTTAATGTCCTC 59.241 44.000 0.00 0.00 0.00 3.71
179 180 5.528320 GTCGCTACTAGTCTCTTAATGTCCT 59.472 44.000 0.00 0.00 0.00 3.85
180 181 5.296283 TGTCGCTACTAGTCTCTTAATGTCC 59.704 44.000 0.00 0.00 0.00 4.02
181 182 6.258287 TCTGTCGCTACTAGTCTCTTAATGTC 59.742 42.308 0.00 0.00 0.00 3.06
182 183 6.114089 TCTGTCGCTACTAGTCTCTTAATGT 58.886 40.000 0.00 0.00 0.00 2.71
183 184 6.293190 CCTCTGTCGCTACTAGTCTCTTAATG 60.293 46.154 0.00 0.00 0.00 1.90
184 185 5.761234 CCTCTGTCGCTACTAGTCTCTTAAT 59.239 44.000 0.00 0.00 0.00 1.40
185 186 5.117584 CCTCTGTCGCTACTAGTCTCTTAA 58.882 45.833 0.00 0.00 0.00 1.85
186 187 4.443175 CCCTCTGTCGCTACTAGTCTCTTA 60.443 50.000 0.00 0.00 0.00 2.10
187 188 3.537580 CCTCTGTCGCTACTAGTCTCTT 58.462 50.000 0.00 0.00 0.00 2.85
188 189 2.158871 CCCTCTGTCGCTACTAGTCTCT 60.159 54.545 0.00 0.00 0.00 3.10
189 190 2.215196 CCCTCTGTCGCTACTAGTCTC 58.785 57.143 0.00 0.00 0.00 3.36
190 191 1.134037 CCCCTCTGTCGCTACTAGTCT 60.134 57.143 0.00 0.00 0.00 3.24
191 192 1.134159 TCCCCTCTGTCGCTACTAGTC 60.134 57.143 0.00 0.00 0.00 2.59
192 193 0.917533 TCCCCTCTGTCGCTACTAGT 59.082 55.000 0.00 0.00 0.00 2.57
193 194 1.141254 TCTCCCCTCTGTCGCTACTAG 59.859 57.143 0.00 0.00 0.00 2.57
194 195 1.141254 CTCTCCCCTCTGTCGCTACTA 59.859 57.143 0.00 0.00 0.00 1.82
195 196 0.106918 CTCTCCCCTCTGTCGCTACT 60.107 60.000 0.00 0.00 0.00 2.57
196 197 0.107116 TCTCTCCCCTCTGTCGCTAC 60.107 60.000 0.00 0.00 0.00 3.58
197 198 0.181587 CTCTCTCCCCTCTGTCGCTA 59.818 60.000 0.00 0.00 0.00 4.26
198 199 1.077068 CTCTCTCCCCTCTGTCGCT 60.077 63.158 0.00 0.00 0.00 4.93
199 200 2.124693 CCTCTCTCCCCTCTGTCGC 61.125 68.421 0.00 0.00 0.00 5.19
200 201 0.750182 GACCTCTCTCCCCTCTGTCG 60.750 65.000 0.00 0.00 0.00 4.35
201 202 0.629058 AGACCTCTCTCCCCTCTGTC 59.371 60.000 0.00 0.00 0.00 3.51
202 203 0.629058 GAGACCTCTCTCCCCTCTGT 59.371 60.000 0.00 0.00 37.56 3.41
203 204 3.513209 GAGACCTCTCTCCCCTCTG 57.487 63.158 0.00 0.00 37.56 3.35
212 213 8.384607 ACAACAAAGATTAAAAGAGACCTCTC 57.615 34.615 0.00 0.00 39.39 3.20
213 214 7.171678 CGACAACAAAGATTAAAAGAGACCTCT 59.828 37.037 0.00 0.00 42.75 3.69
214 215 7.041984 ACGACAACAAAGATTAAAAGAGACCTC 60.042 37.037 0.00 0.00 0.00 3.85
215 216 6.766467 ACGACAACAAAGATTAAAAGAGACCT 59.234 34.615 0.00 0.00 0.00 3.85
216 217 6.956047 ACGACAACAAAGATTAAAAGAGACC 58.044 36.000 0.00 0.00 0.00 3.85
217 218 8.120465 TGAACGACAACAAAGATTAAAAGAGAC 58.880 33.333 0.00 0.00 0.00 3.36
218 219 8.120465 GTGAACGACAACAAAGATTAAAAGAGA 58.880 33.333 0.00 0.00 0.00 3.10
219 220 7.908082 TGTGAACGACAACAAAGATTAAAAGAG 59.092 33.333 0.00 0.00 0.00 2.85
220 221 7.753659 TGTGAACGACAACAAAGATTAAAAGA 58.246 30.769 0.00 0.00 0.00 2.52
221 222 7.908082 TCTGTGAACGACAACAAAGATTAAAAG 59.092 33.333 0.00 0.00 32.80 2.27
222 223 7.753659 TCTGTGAACGACAACAAAGATTAAAA 58.246 30.769 0.00 0.00 32.80 1.52
223 224 7.310072 TCTGTGAACGACAACAAAGATTAAA 57.690 32.000 0.00 0.00 32.80 1.52
224 225 6.912203 TCTGTGAACGACAACAAAGATTAA 57.088 33.333 0.00 0.00 32.80 1.40
225 226 6.314152 TGTTCTGTGAACGACAACAAAGATTA 59.686 34.615 6.05 0.00 32.80 1.75
226 227 5.123186 TGTTCTGTGAACGACAACAAAGATT 59.877 36.000 6.05 0.00 32.80 2.40
227 228 4.634004 TGTTCTGTGAACGACAACAAAGAT 59.366 37.500 6.05 0.00 32.80 2.40
228 229 3.997681 TGTTCTGTGAACGACAACAAAGA 59.002 39.130 6.05 0.00 32.80 2.52
229 230 4.335082 TGTTCTGTGAACGACAACAAAG 57.665 40.909 6.05 0.00 32.80 2.77
230 231 4.750952 TTGTTCTGTGAACGACAACAAA 57.249 36.364 6.05 0.00 34.00 2.83
231 232 4.214545 ACTTTGTTCTGTGAACGACAACAA 59.785 37.500 6.05 0.00 34.75 2.83
232 233 3.749088 ACTTTGTTCTGTGAACGACAACA 59.251 39.130 6.05 0.00 32.80 3.33
233 234 4.336532 ACTTTGTTCTGTGAACGACAAC 57.663 40.909 6.05 0.00 32.80 3.32
234 235 5.640357 ACTAACTTTGTTCTGTGAACGACAA 59.360 36.000 6.05 0.00 32.80 3.18
235 236 5.172934 ACTAACTTTGTTCTGTGAACGACA 58.827 37.500 6.05 0.00 0.00 4.35
236 237 5.713822 ACTAACTTTGTTCTGTGAACGAC 57.286 39.130 6.05 0.00 0.00 4.34
237 238 7.707464 TCATAACTAACTTTGTTCTGTGAACGA 59.293 33.333 6.05 1.68 0.00 3.85
238 239 7.847487 TCATAACTAACTTTGTTCTGTGAACG 58.153 34.615 6.05 0.00 0.00 3.95
239 240 7.798982 GCTCATAACTAACTTTGTTCTGTGAAC 59.201 37.037 3.74 3.74 0.00 3.18
240 241 7.715249 AGCTCATAACTAACTTTGTTCTGTGAA 59.285 33.333 7.32 0.00 0.00 3.18
241 242 7.217200 AGCTCATAACTAACTTTGTTCTGTGA 58.783 34.615 7.32 4.46 0.00 3.58
242 243 7.426929 AGCTCATAACTAACTTTGTTCTGTG 57.573 36.000 0.00 0.00 0.00 3.66
243 244 6.366332 CGAGCTCATAACTAACTTTGTTCTGT 59.634 38.462 15.40 0.00 0.00 3.41
244 245 6.670927 GCGAGCTCATAACTAACTTTGTTCTG 60.671 42.308 15.40 0.00 0.00 3.02
245 246 5.348997 GCGAGCTCATAACTAACTTTGTTCT 59.651 40.000 15.40 0.00 0.00 3.01
246 247 5.446073 GGCGAGCTCATAACTAACTTTGTTC 60.446 44.000 15.40 0.00 0.00 3.18
247 248 4.392138 GGCGAGCTCATAACTAACTTTGTT 59.608 41.667 15.40 0.00 0.00 2.83
248 249 3.933332 GGCGAGCTCATAACTAACTTTGT 59.067 43.478 15.40 0.00 0.00 2.83
249 250 3.932710 TGGCGAGCTCATAACTAACTTTG 59.067 43.478 15.40 0.00 0.00 2.77
250 251 4.202245 TGGCGAGCTCATAACTAACTTT 57.798 40.909 15.40 0.00 0.00 2.66
251 252 3.887621 TGGCGAGCTCATAACTAACTT 57.112 42.857 15.40 0.00 0.00 2.66
252 253 3.195825 ACTTGGCGAGCTCATAACTAACT 59.804 43.478 15.40 0.00 0.00 2.24
253 254 3.522553 ACTTGGCGAGCTCATAACTAAC 58.477 45.455 15.40 0.00 0.00 2.34
254 255 3.887621 ACTTGGCGAGCTCATAACTAA 57.112 42.857 15.40 3.33 0.00 2.24
255 256 4.262036 CCATACTTGGCGAGCTCATAACTA 60.262 45.833 15.40 0.00 35.85 2.24
256 257 3.493350 CCATACTTGGCGAGCTCATAACT 60.493 47.826 15.40 0.00 35.85 2.24
257 258 2.802816 CCATACTTGGCGAGCTCATAAC 59.197 50.000 15.40 0.67 35.85 1.89
258 259 3.111853 CCATACTTGGCGAGCTCATAA 57.888 47.619 15.40 4.40 35.85 1.90
259 260 2.820059 CCATACTTGGCGAGCTCATA 57.180 50.000 15.40 0.00 35.85 2.15
260 261 3.694364 CCATACTTGGCGAGCTCAT 57.306 52.632 15.40 0.00 35.85 2.90
269 270 3.432326 GGAAGTGCTCCTACCATACTTGG 60.432 52.174 0.00 0.00 44.20 3.61
270 271 3.432326 GGGAAGTGCTCCTACCATACTTG 60.432 52.174 0.00 0.00 44.68 3.16
271 272 2.772515 GGGAAGTGCTCCTACCATACTT 59.227 50.000 0.00 0.00 44.68 2.24
272 273 2.399580 GGGAAGTGCTCCTACCATACT 58.600 52.381 0.00 0.00 44.68 2.12
273 274 1.068741 CGGGAAGTGCTCCTACCATAC 59.931 57.143 0.00 0.00 44.68 2.39
274 275 1.410004 CGGGAAGTGCTCCTACCATA 58.590 55.000 0.00 0.00 44.68 2.74
275 276 1.972660 GCGGGAAGTGCTCCTACCAT 61.973 60.000 0.00 0.00 44.68 3.55
276 277 2.656069 GCGGGAAGTGCTCCTACCA 61.656 63.158 0.00 0.00 44.68 3.25
277 278 2.187163 GCGGGAAGTGCTCCTACC 59.813 66.667 0.00 0.00 44.68 3.18
278 279 1.448013 GTGCGGGAAGTGCTCCTAC 60.448 63.158 0.00 0.00 44.68 3.18
279 280 2.656069 GGTGCGGGAAGTGCTCCTA 61.656 63.158 0.00 0.00 44.68 2.94
280 281 4.021925 GGTGCGGGAAGTGCTCCT 62.022 66.667 0.00 0.00 44.68 3.69
281 282 4.329545 TGGTGCGGGAAGTGCTCC 62.330 66.667 0.00 0.00 44.26 4.70
282 283 3.050275 GTGGTGCGGGAAGTGCTC 61.050 66.667 0.00 0.00 0.00 4.26
283 284 3.560251 AGTGGTGCGGGAAGTGCT 61.560 61.111 0.00 0.00 0.00 4.40
284 285 3.357079 CAGTGGTGCGGGAAGTGC 61.357 66.667 0.00 0.00 0.00 4.40
285 286 1.101049 AAACAGTGGTGCGGGAAGTG 61.101 55.000 0.00 0.00 0.00 3.16
286 287 0.470766 TAAACAGTGGTGCGGGAAGT 59.529 50.000 0.00 0.00 0.00 3.01
287 288 1.156736 CTAAACAGTGGTGCGGGAAG 58.843 55.000 0.00 0.00 0.00 3.46
288 289 0.470766 ACTAAACAGTGGTGCGGGAA 59.529 50.000 0.00 0.00 0.00 3.97
289 290 0.470766 AACTAAACAGTGGTGCGGGA 59.529 50.000 0.00 0.00 0.00 5.14
290 291 0.591170 CAACTAAACAGTGGTGCGGG 59.409 55.000 0.00 0.00 0.00 6.13
291 292 0.040425 GCAACTAAACAGTGGTGCGG 60.040 55.000 0.00 0.00 0.00 5.69
292 293 0.660488 TGCAACTAAACAGTGGTGCG 59.340 50.000 0.00 0.00 0.00 5.34
293 294 2.119671 GTGCAACTAAACAGTGGTGC 57.880 50.000 0.00 0.00 0.00 5.01
306 307 1.207329 AGGTCTAATCCCGAGTGCAAC 59.793 52.381 0.00 0.00 0.00 4.17
307 308 1.480954 GAGGTCTAATCCCGAGTGCAA 59.519 52.381 0.00 0.00 0.00 4.08
308 309 1.112113 GAGGTCTAATCCCGAGTGCA 58.888 55.000 0.00 0.00 0.00 4.57
309 310 1.112113 TGAGGTCTAATCCCGAGTGC 58.888 55.000 0.00 0.00 0.00 4.40
310 311 3.133003 ACAATGAGGTCTAATCCCGAGTG 59.867 47.826 0.00 0.00 0.00 3.51
311 312 3.375699 ACAATGAGGTCTAATCCCGAGT 58.624 45.455 0.00 0.00 0.00 4.18
312 313 4.122776 CAACAATGAGGTCTAATCCCGAG 58.877 47.826 0.00 0.00 0.00 4.63
313 314 3.772572 TCAACAATGAGGTCTAATCCCGA 59.227 43.478 0.00 0.00 0.00 5.14
314 315 4.137116 TCAACAATGAGGTCTAATCCCG 57.863 45.455 0.00 0.00 0.00 5.14
326 327 2.224523 ACGGAGGCTTTCTCAACAATGA 60.225 45.455 0.00 0.00 44.19 2.57
327 328 2.095567 CACGGAGGCTTTCTCAACAATG 60.096 50.000 0.00 0.00 44.19 2.82
328 329 2.154462 CACGGAGGCTTTCTCAACAAT 58.846 47.619 0.00 0.00 44.19 2.71
329 330 1.140052 TCACGGAGGCTTTCTCAACAA 59.860 47.619 0.00 0.00 44.19 2.83
330 331 0.756294 TCACGGAGGCTTTCTCAACA 59.244 50.000 0.00 0.00 44.19 3.33
331 332 1.270358 ACTCACGGAGGCTTTCTCAAC 60.270 52.381 5.98 0.00 44.19 3.18
332 333 1.048601 ACTCACGGAGGCTTTCTCAA 58.951 50.000 5.98 0.00 44.19 3.02
333 334 1.919240 TACTCACGGAGGCTTTCTCA 58.081 50.000 5.98 0.00 44.19 3.27
334 335 3.119101 TCATTACTCACGGAGGCTTTCTC 60.119 47.826 5.98 0.00 41.71 2.87
335 336 2.832129 TCATTACTCACGGAGGCTTTCT 59.168 45.455 5.98 0.00 33.35 2.52
336 337 3.119101 TCTCATTACTCACGGAGGCTTTC 60.119 47.826 5.98 0.00 33.35 2.62
337 338 2.832129 TCTCATTACTCACGGAGGCTTT 59.168 45.455 5.98 0.00 33.35 3.51
338 339 2.457598 TCTCATTACTCACGGAGGCTT 58.542 47.619 5.98 0.00 33.35 4.35
339 340 2.145397 TCTCATTACTCACGGAGGCT 57.855 50.000 5.98 0.00 33.35 4.58
340 341 2.961526 TTCTCATTACTCACGGAGGC 57.038 50.000 5.98 0.00 33.35 4.70
341 342 5.068460 AGAGATTTCTCATTACTCACGGAGG 59.932 44.000 10.07 0.00 45.21 4.30
342 343 6.142818 AGAGATTTCTCATTACTCACGGAG 57.857 41.667 10.07 0.03 45.21 4.63
343 344 6.531503 AAGAGATTTCTCATTACTCACGGA 57.468 37.500 10.07 0.00 45.21 4.69
344 345 7.331934 TGAAAAGAGATTTCTCATTACTCACGG 59.668 37.037 10.07 0.00 46.27 4.94
345 346 8.165428 GTGAAAAGAGATTTCTCATTACTCACG 58.835 37.037 10.07 0.00 46.27 4.35
346 347 8.447053 GGTGAAAAGAGATTTCTCATTACTCAC 58.553 37.037 15.44 15.44 46.27 3.51
347 348 8.378565 AGGTGAAAAGAGATTTCTCATTACTCA 58.621 33.333 10.07 3.75 46.27 3.41
348 349 8.663911 CAGGTGAAAAGAGATTTCTCATTACTC 58.336 37.037 10.07 1.44 46.27 2.59
349 350 7.120432 GCAGGTGAAAAGAGATTTCTCATTACT 59.880 37.037 10.07 0.11 46.27 2.24
350 351 7.094634 TGCAGGTGAAAAGAGATTTCTCATTAC 60.095 37.037 10.07 1.24 46.27 1.89
351 352 6.942005 TGCAGGTGAAAAGAGATTTCTCATTA 59.058 34.615 10.07 0.00 46.27 1.90
352 353 5.771666 TGCAGGTGAAAAGAGATTTCTCATT 59.228 36.000 10.07 1.54 46.27 2.57
353 354 5.319453 TGCAGGTGAAAAGAGATTTCTCAT 58.681 37.500 10.07 0.00 46.27 2.90
354 355 4.717877 TGCAGGTGAAAAGAGATTTCTCA 58.282 39.130 10.07 0.00 46.27 3.27
355 356 5.695851 TTGCAGGTGAAAAGAGATTTCTC 57.304 39.130 0.00 0.00 46.27 2.87
356 357 6.469782 TTTTGCAGGTGAAAAGAGATTTCT 57.530 33.333 2.98 0.00 46.27 2.52
396 397 8.586570 AATCGTAAAAATTTTGTGAATGCTCA 57.413 26.923 3.73 0.00 0.00 4.26
397 398 9.862585 AAAATCGTAAAAATTTTGTGAATGCTC 57.137 25.926 3.73 0.00 35.54 4.26
445 446 5.732633 TCCTACGATACCAATTCGGAAAAA 58.267 37.500 0.00 0.00 40.83 1.94
446 447 5.127519 TCTCCTACGATACCAATTCGGAAAA 59.872 40.000 0.00 0.00 40.83 2.29
447 448 4.646040 TCTCCTACGATACCAATTCGGAAA 59.354 41.667 0.00 0.00 40.83 3.13
448 449 4.209538 TCTCCTACGATACCAATTCGGAA 58.790 43.478 0.00 0.00 40.83 4.30
449 450 3.824133 TCTCCTACGATACCAATTCGGA 58.176 45.455 0.00 0.00 40.83 4.55
450 451 4.672024 CGATCTCCTACGATACCAATTCGG 60.672 50.000 0.00 0.00 40.83 4.30
451 452 4.404324 CGATCTCCTACGATACCAATTCG 58.596 47.826 0.00 0.00 42.20 3.34
452 453 4.734917 CCGATCTCCTACGATACCAATTC 58.265 47.826 0.00 0.00 0.00 2.17
453 454 3.056749 GCCGATCTCCTACGATACCAATT 60.057 47.826 0.00 0.00 0.00 2.32
454 455 2.492484 GCCGATCTCCTACGATACCAAT 59.508 50.000 0.00 0.00 0.00 3.16
455 456 1.884579 GCCGATCTCCTACGATACCAA 59.115 52.381 0.00 0.00 0.00 3.67
456 457 1.531423 GCCGATCTCCTACGATACCA 58.469 55.000 0.00 0.00 0.00 3.25
457 458 0.810016 GGCCGATCTCCTACGATACC 59.190 60.000 0.00 0.00 0.00 2.73
458 459 0.810016 GGGCCGATCTCCTACGATAC 59.190 60.000 0.00 0.00 0.00 2.24
459 460 0.675837 CGGGCCGATCTCCTACGATA 60.676 60.000 24.41 0.00 0.00 2.92
460 461 1.972223 CGGGCCGATCTCCTACGAT 60.972 63.158 24.41 0.00 0.00 3.73
461 462 2.593725 CGGGCCGATCTCCTACGA 60.594 66.667 24.41 0.00 0.00 3.43
462 463 3.671411 CCGGGCCGATCTCCTACG 61.671 72.222 30.79 2.47 0.00 3.51
463 464 2.085042 GAACCGGGCCGATCTCCTAC 62.085 65.000 30.79 5.81 0.00 3.18
464 465 1.831286 GAACCGGGCCGATCTCCTA 60.831 63.158 30.79 0.00 0.00 2.94
465 466 3.155167 GAACCGGGCCGATCTCCT 61.155 66.667 30.79 0.00 0.00 3.69
466 467 4.237207 GGAACCGGGCCGATCTCC 62.237 72.222 30.79 24.29 0.00 3.71
467 468 2.717139 GATGGAACCGGGCCGATCTC 62.717 65.000 30.79 19.46 0.00 2.75
468 469 2.768344 ATGGAACCGGGCCGATCT 60.768 61.111 30.79 11.21 0.00 2.75
469 470 2.280865 GATGGAACCGGGCCGATC 60.281 66.667 30.79 23.95 0.00 3.69
554 555 0.670546 GGCTTTGAGCGCTGTGTCTA 60.671 55.000 18.48 0.00 43.62 2.59
821 849 2.029288 CGATGTTGTGCAGGAGCGT 61.029 57.895 0.00 0.00 46.23 5.07
995 1029 1.613317 TTGAGGTGGACGCATCGGAT 61.613 55.000 0.00 0.00 0.00 4.18
1260 1301 0.835276 CCCTGCTCTCCATGATGACA 59.165 55.000 0.00 0.00 0.00 3.58
1487 1532 2.173519 CATGGCCAATCTTCACCTTGT 58.826 47.619 10.96 0.00 0.00 3.16
1855 1933 0.041535 TGGAGGCCAATGGAAGCATT 59.958 50.000 5.01 0.00 0.00 3.56
1881 1959 8.724229 TCAAAATATGATGCTAGTACATGATGC 58.276 33.333 0.00 0.00 31.50 3.91
2023 2138 2.046892 GTGCCAGACTCGTGCCAT 60.047 61.111 0.00 0.00 0.00 4.40
2191 2309 3.258872 CCAATTTGGATTGCACCTCTTCA 59.741 43.478 10.03 0.00 40.96 3.02
2517 2657 2.415893 CCGGTGTGAAAATCTGCATTCC 60.416 50.000 0.00 0.00 0.00 3.01
2546 2686 5.472148 TCAAAATGATGATCAAAGCACCAC 58.528 37.500 0.00 0.00 0.00 4.16
2589 2729 2.260247 TTGCTGAGCAATGAGTGGC 58.740 52.632 17.04 0.00 43.99 5.01
2627 2767 1.831736 CCCCAGACTGTTACACCTAGG 59.168 57.143 7.41 7.41 0.00 3.02
2628 2768 2.537143 ACCCCAGACTGTTACACCTAG 58.463 52.381 0.93 0.00 0.00 3.02
2629 2769 2.708037 ACCCCAGACTGTTACACCTA 57.292 50.000 0.93 0.00 0.00 3.08
2672 2812 8.133627 CCATGGTGATGCAAAAACAAAAATAAA 58.866 29.630 2.57 0.00 0.00 1.40
2716 2856 6.755141 CACCTTTCAAGATTAAAGCATGATGG 59.245 38.462 0.00 0.00 33.48 3.51
2852 2993 7.592164 CGGTTTTTAAAACTATGGTTTCGACAT 59.408 33.333 18.31 0.00 43.90 3.06
2880 3021 3.030415 TTTTTCCCTTCAGTCCGGC 57.970 52.632 0.00 0.00 0.00 6.13
2925 3067 6.296365 GTCTAAAAGACCAACACACCTTAC 57.704 41.667 0.00 0.00 39.28 2.34
2947 3089 5.324409 TCTTGATATTTTGCTGGTCTTGGT 58.676 37.500 0.00 0.00 0.00 3.67
2948 3090 5.902613 TCTTGATATTTTGCTGGTCTTGG 57.097 39.130 0.00 0.00 0.00 3.61
2949 3091 8.767478 ATTTTCTTGATATTTTGCTGGTCTTG 57.233 30.769 0.00 0.00 0.00 3.02
2952 3094 7.029563 ACGATTTTCTTGATATTTTGCTGGTC 58.970 34.615 0.00 0.00 0.00 4.02
2994 3136 3.964031 TGGTGGCTCAAGGTTAAATGTTT 59.036 39.130 0.00 0.00 0.00 2.83
2998 3140 2.890945 GTGTGGTGGCTCAAGGTTAAAT 59.109 45.455 0.00 0.00 0.00 1.40
3005 3147 3.357079 GGCGTGTGGTGGCTCAAG 61.357 66.667 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.