Multiple sequence alignment - TraesCS4A01G195400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G195400 chr4A 100.000 6652 0 0 829 7480 477313281 477306630 0.000000e+00 12285.0
1 TraesCS4A01G195400 chr4A 85.654 2628 312 34 829 3418 477066998 477064398 0.000000e+00 2704.0
2 TraesCS4A01G195400 chr4A 100.000 542 0 0 1 542 477314109 477313568 0.000000e+00 1002.0
3 TraesCS4A01G195400 chr4D 98.648 3551 37 7 829 4377 98576320 98579861 0.000000e+00 6281.0
4 TraesCS4A01G195400 chr4D 95.941 2291 71 7 5203 7480 98580871 98583152 0.000000e+00 3696.0
5 TraesCS4A01G195400 chr4D 85.312 2628 322 34 829 3418 98883704 98886305 0.000000e+00 2656.0
6 TraesCS4A01G195400 chr4D 93.523 633 28 12 4376 5000 98579918 98580545 0.000000e+00 929.0
7 TraesCS4A01G195400 chr4D 92.647 544 26 8 1 542 98575718 98576249 0.000000e+00 771.0
8 TraesCS4A01G195400 chr4D 97.778 45 1 0 5165 5209 98580544 98580588 2.240000e-10 78.7
9 TraesCS4A01G195400 chr4B 96.916 3567 85 13 829 4377 140594704 140591145 0.000000e+00 5954.0
10 TraesCS4A01G195400 chr4B 94.250 1774 68 10 5306 7077 140590240 140588499 0.000000e+00 2680.0
11 TraesCS4A01G195400 chr4B 85.089 2629 325 35 829 3418 140701700 140704300 0.000000e+00 2621.0
12 TraesCS4A01G195400 chr4B 91.509 636 36 14 4376 5000 140591080 140590452 0.000000e+00 859.0
13 TraesCS4A01G195400 chr4B 98.039 255 4 1 288 542 140595028 140594775 6.890000e-120 442.0
14 TraesCS4A01G195400 chr4B 89.286 224 18 4 14 233 140601320 140601099 7.390000e-70 276.0
15 TraesCS4A01G195400 chr4B 98.529 68 1 0 5165 5232 140590453 140590386 3.670000e-23 121.0
16 TraesCS4A01G195400 chr4B 94.444 54 3 0 5230 5283 140590276 140590223 4.810000e-12 84.2
17 TraesCS4A01G195400 chr6A 93.567 171 5 3 4999 5167 33260027 33259861 4.480000e-62 250.0
18 TraesCS4A01G195400 chr3D 91.053 190 10 2 4980 5167 105119489 105119305 4.480000e-62 250.0
19 TraesCS4A01G195400 chr7A 93.064 173 6 3 4996 5166 156115836 156116004 1.610000e-61 248.0
20 TraesCS4A01G195400 chr6D 92.265 181 5 4 4996 5172 41542654 41542479 1.610000e-61 248.0
21 TraesCS4A01G195400 chr2A 92.179 179 7 4 4998 5174 469790201 469790028 5.800000e-61 246.0
22 TraesCS4A01G195400 chr3A 92.571 175 6 4 4999 5171 291796676 291796845 2.080000e-60 244.0
23 TraesCS4A01G195400 chr3B 92.529 174 6 2 4996 5167 111133822 111133654 7.500000e-60 243.0
24 TraesCS4A01G195400 chr1D 92.529 174 6 2 4995 5166 9218376 9218208 7.500000e-60 243.0
25 TraesCS4A01G195400 chr7D 91.954 174 6 3 4996 5166 517805649 517805481 3.490000e-58 237.0
26 TraesCS4A01G195400 chr2D 94.595 37 1 1 5134 5170 547680335 547680370 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G195400 chr4A 477306630 477314109 7479 True 6643.500000 12285 100.0000 1 7480 2 chr4A.!!$R2 7479
1 TraesCS4A01G195400 chr4A 477064398 477066998 2600 True 2704.000000 2704 85.6540 829 3418 1 chr4A.!!$R1 2589
2 TraesCS4A01G195400 chr4D 98883704 98886305 2601 False 2656.000000 2656 85.3120 829 3418 1 chr4D.!!$F1 2589
3 TraesCS4A01G195400 chr4D 98575718 98583152 7434 False 2351.140000 6281 95.7074 1 7480 5 chr4D.!!$F2 7479
4 TraesCS4A01G195400 chr4B 140701700 140704300 2600 False 2621.000000 2621 85.0890 829 3418 1 chr4B.!!$F1 2589
5 TraesCS4A01G195400 chr4B 140588499 140595028 6529 True 1690.033333 5954 95.6145 288 7077 6 chr4B.!!$R2 6789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
848 851 0.250597 CCGTCCGAGGGTTTCCTTTT 60.251 55.000 0.00 0.0 45.05 2.27 F
1365 1387 2.679837 CGGCAAGTTCATGTGCTCTTAT 59.320 45.455 6.05 0.0 40.70 1.73 F
2259 2284 4.283467 ACTGCAACTGACCAGAGTAATACA 59.717 41.667 3.76 0.0 33.40 2.29 F
3366 3401 0.389025 CTCCAAACAAAGTGGCCCAC 59.611 55.000 5.50 5.5 35.99 4.61 F
5008 5139 0.247736 GCTGGCATATACTCCCTCCG 59.752 60.000 0.00 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2259 2284 3.041508 GACTGGGCGTCTCTTTTAACT 57.958 47.619 0.00 0.0 39.61 2.24 R
2499 2525 3.191371 GCCATGACTTTTTAGGACCTGTG 59.809 47.826 3.53 0.0 0.00 3.66 R
3648 3700 0.392595 TACACACACAAACACGGGCA 60.393 50.000 0.00 0.0 0.00 5.36 R
5150 5281 0.041386 AAGCTACTCCCTCCGTTCCT 59.959 55.000 0.00 0.0 0.00 3.36 R
6679 7215 0.317160 TCTCACTGAATTCACGCCGT 59.683 50.000 3.38 0.0 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 27 8.638685 CCTCACTTGCAAATCCTAAATTATTG 57.361 34.615 0.00 0.00 0.00 1.90
44 46 3.276281 GGACACCCCCAATAACCAC 57.724 57.895 0.00 0.00 0.00 4.16
113 115 8.786826 TTTTTATGAGAATACGTTGGAGATGT 57.213 30.769 0.00 0.00 0.00 3.06
137 139 5.067273 TCTAAAACACCCTAACCACACATG 58.933 41.667 0.00 0.00 0.00 3.21
150 152 7.822334 CCTAACCACACATGTAGAAGAAACATA 59.178 37.037 0.00 0.00 35.82 2.29
205 207 8.924511 TTCCAACTTCAATCAGAGTAGAAAAT 57.075 30.769 0.00 0.00 0.00 1.82
206 208 8.924511 TCCAACTTCAATCAGAGTAGAAAATT 57.075 30.769 0.00 0.00 0.00 1.82
242 244 3.147553 TGTGCCTTTATGCAAGTACCA 57.852 42.857 0.00 0.00 44.11 3.25
243 245 3.491342 TGTGCCTTTATGCAAGTACCAA 58.509 40.909 0.00 0.00 44.11 3.67
264 266 3.559238 ACTGGAACAAAATAGCAAGCG 57.441 42.857 0.00 0.00 38.70 4.68
267 269 4.083484 ACTGGAACAAAATAGCAAGCGTAC 60.083 41.667 0.00 0.00 38.70 3.67
269 271 4.457603 TGGAACAAAATAGCAAGCGTACAT 59.542 37.500 0.00 0.00 31.92 2.29
271 273 6.317642 TGGAACAAAATAGCAAGCGTACATAT 59.682 34.615 0.00 0.00 31.92 1.78
272 274 7.496263 TGGAACAAAATAGCAAGCGTACATATA 59.504 33.333 0.00 0.00 31.92 0.86
848 851 0.250597 CCGTCCGAGGGTTTCCTTTT 60.251 55.000 0.00 0.00 45.05 2.27
1365 1387 2.679837 CGGCAAGTTCATGTGCTCTTAT 59.320 45.455 6.05 0.00 40.70 1.73
1956 1981 6.551385 AATTCAGATTGCGAGGATATTGAC 57.449 37.500 0.00 0.00 0.00 3.18
2259 2284 4.283467 ACTGCAACTGACCAGAGTAATACA 59.717 41.667 3.76 0.00 33.40 2.29
2446 2472 6.791887 ACATCCATTTGCTATCTTACATCG 57.208 37.500 0.00 0.00 0.00 3.84
2499 2525 1.342174 CCAAATATGCAGGCACATCCC 59.658 52.381 0.00 0.00 34.51 3.85
3366 3401 0.389025 CTCCAAACAAAGTGGCCCAC 59.611 55.000 5.50 5.50 35.99 4.61
3459 3494 9.739276 TTTAATTCTCTTCTAAATCTTCTGCCA 57.261 29.630 0.00 0.00 0.00 4.92
3612 3662 9.608617 GTGCTGAAAACTCATATGATATTGATG 57.391 33.333 5.72 0.00 0.00 3.07
3793 3847 0.308993 GTGCAACCAAGTCTGAGTGC 59.691 55.000 0.00 0.00 34.48 4.40
3835 3889 7.872113 AATATGTGGAAGATCTTTTGGTCTC 57.128 36.000 9.87 0.00 0.00 3.36
3843 3897 5.815233 AGATCTTTTGGTCTCTGAACTGA 57.185 39.130 0.00 0.00 0.00 3.41
3970 4024 3.690628 TGTGTGACGAATCAATCATGCAT 59.309 39.130 0.00 0.00 36.31 3.96
3983 4037 5.469760 TCAATCATGCATTTCGATCGGTTAT 59.530 36.000 16.41 3.54 0.00 1.89
4362 4417 1.001764 TCCTGCCAGCCATCAAGTG 60.002 57.895 0.00 0.00 0.00 3.16
4425 4546 2.780065 TGTGCATTTCTGTGTCTTGC 57.220 45.000 0.00 0.00 0.00 4.01
4436 4557 2.327081 GTGTCTTGCACATGCTGAAG 57.673 50.000 5.31 1.72 46.91 3.02
4437 4558 1.605710 GTGTCTTGCACATGCTGAAGT 59.394 47.619 5.31 0.00 46.91 3.01
4438 4559 1.605232 TGTCTTGCACATGCTGAAGTG 59.395 47.619 5.31 0.00 42.66 3.16
4440 4561 1.605232 TCTTGCACATGCTGAAGTGTG 59.395 47.619 5.31 1.38 46.42 3.82
4441 4562 1.335810 CTTGCACATGCTGAAGTGTGT 59.664 47.619 5.31 0.00 45.66 3.72
4442 4563 2.252976 TGCACATGCTGAAGTGTGTA 57.747 45.000 5.31 0.25 45.66 2.90
4444 4565 3.936564 TGCACATGCTGAAGTGTGTATA 58.063 40.909 5.31 0.00 45.66 1.47
4445 4566 4.516323 TGCACATGCTGAAGTGTGTATAT 58.484 39.130 5.31 0.00 45.66 0.86
4446 4567 5.669477 TGCACATGCTGAAGTGTGTATATA 58.331 37.500 5.31 0.00 45.66 0.86
4448 4569 7.441017 TGCACATGCTGAAGTGTGTATATATA 58.559 34.615 5.31 0.00 45.66 0.86
4449 4570 8.096414 TGCACATGCTGAAGTGTGTATATATAT 58.904 33.333 5.31 0.00 45.66 0.86
4450 4571 8.598924 GCACATGCTGAAGTGTGTATATATATC 58.401 37.037 0.00 0.00 45.66 1.63
4527 4648 3.646491 GACGGAAGGCGTATTTTACAC 57.354 47.619 0.00 0.00 0.00 2.90
4529 4650 3.602483 ACGGAAGGCGTATTTTACACAT 58.398 40.909 0.00 0.00 0.00 3.21
4530 4651 4.757594 ACGGAAGGCGTATTTTACACATA 58.242 39.130 0.00 0.00 0.00 2.29
4640 4768 9.573133 CTTTCTTATGATTGTGATTTAACCACC 57.427 33.333 5.12 0.00 33.80 4.61
4936 5067 5.508567 TGAATGATGGCTTGAGGATTGTTA 58.491 37.500 0.00 0.00 0.00 2.41
4998 5129 7.592885 AAGAATTGATAGTTTGCTGGCATAT 57.407 32.000 0.00 0.00 0.00 1.78
4999 5130 8.696043 AAGAATTGATAGTTTGCTGGCATATA 57.304 30.769 0.00 0.00 0.00 0.86
5000 5131 8.103948 AGAATTGATAGTTTGCTGGCATATAC 57.896 34.615 0.00 0.00 0.00 1.47
5001 5132 7.941238 AGAATTGATAGTTTGCTGGCATATACT 59.059 33.333 0.00 3.88 0.00 2.12
5002 5133 7.678947 ATTGATAGTTTGCTGGCATATACTC 57.321 36.000 0.00 0.00 0.00 2.59
5003 5134 5.551233 TGATAGTTTGCTGGCATATACTCC 58.449 41.667 0.00 0.00 0.00 3.85
5004 5135 3.214696 AGTTTGCTGGCATATACTCCC 57.785 47.619 0.00 0.00 0.00 4.30
5005 5136 2.780010 AGTTTGCTGGCATATACTCCCT 59.220 45.455 0.00 0.00 0.00 4.20
5006 5137 3.142174 GTTTGCTGGCATATACTCCCTC 58.858 50.000 0.00 0.00 0.00 4.30
5007 5138 1.352083 TGCTGGCATATACTCCCTCC 58.648 55.000 0.00 0.00 0.00 4.30
5008 5139 0.247736 GCTGGCATATACTCCCTCCG 59.752 60.000 0.00 0.00 0.00 4.63
5009 5140 1.633774 CTGGCATATACTCCCTCCGT 58.366 55.000 0.00 0.00 0.00 4.69
5010 5141 1.971357 CTGGCATATACTCCCTCCGTT 59.029 52.381 0.00 0.00 0.00 4.44
5011 5142 1.968493 TGGCATATACTCCCTCCGTTC 59.032 52.381 0.00 0.00 0.00 3.95
5012 5143 1.275573 GGCATATACTCCCTCCGTTCC 59.724 57.143 0.00 0.00 0.00 3.62
5013 5144 1.275573 GCATATACTCCCTCCGTTCCC 59.724 57.143 0.00 0.00 0.00 3.97
5014 5145 2.605257 CATATACTCCCTCCGTTCCCA 58.395 52.381 0.00 0.00 0.00 4.37
5015 5146 2.852714 TATACTCCCTCCGTTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
5016 5147 1.961133 ATACTCCCTCCGTTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
5017 5148 1.961133 TACTCCCTCCGTTCCCAAAT 58.039 50.000 0.00 0.00 0.00 2.32
5018 5149 1.961133 ACTCCCTCCGTTCCCAAATA 58.039 50.000 0.00 0.00 0.00 1.40
5019 5150 2.488836 ACTCCCTCCGTTCCCAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
5020 5151 3.660959 ACTCCCTCCGTTCCCAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
5021 5152 4.042174 ACTCCCTCCGTTCCCAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
5022 5153 4.102681 ACTCCCTCCGTTCCCAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
5023 5154 4.042174 TCCCTCCGTTCCCAAATATAAGT 58.958 43.478 0.00 0.00 0.00 2.24
5024 5155 4.102054 TCCCTCCGTTCCCAAATATAAGTC 59.898 45.833 0.00 0.00 0.00 3.01
5025 5156 4.102681 CCCTCCGTTCCCAAATATAAGTCT 59.897 45.833 0.00 0.00 0.00 3.24
5026 5157 5.397559 CCCTCCGTTCCCAAATATAAGTCTT 60.398 44.000 0.00 0.00 0.00 3.01
5027 5158 6.120220 CCTCCGTTCCCAAATATAAGTCTTT 58.880 40.000 0.00 0.00 0.00 2.52
5028 5159 6.260271 CCTCCGTTCCCAAATATAAGTCTTTC 59.740 42.308 0.00 0.00 0.00 2.62
5029 5160 6.954232 TCCGTTCCCAAATATAAGTCTTTCT 58.046 36.000 0.00 0.00 0.00 2.52
5030 5161 8.081517 TCCGTTCCCAAATATAAGTCTTTCTA 57.918 34.615 0.00 0.00 0.00 2.10
5031 5162 8.711170 TCCGTTCCCAAATATAAGTCTTTCTAT 58.289 33.333 0.00 0.00 0.00 1.98
5032 5163 9.338622 CCGTTCCCAAATATAAGTCTTTCTATT 57.661 33.333 0.00 0.00 0.00 1.73
5047 5178 9.261035 AGTCTTTCTATTCTAGAGATTCCAACA 57.739 33.333 0.00 0.00 35.96 3.33
5048 5179 9.877178 GTCTTTCTATTCTAGAGATTCCAACAA 57.123 33.333 0.00 0.00 35.96 2.83
5050 5181 9.883142 CTTTCTATTCTAGAGATTCCAACAAGT 57.117 33.333 0.00 0.00 35.96 3.16
5051 5182 9.658799 TTTCTATTCTAGAGATTCCAACAAGTG 57.341 33.333 0.00 0.00 35.96 3.16
5052 5183 8.595362 TCTATTCTAGAGATTCCAACAAGTGA 57.405 34.615 0.00 0.00 0.00 3.41
5053 5184 8.470805 TCTATTCTAGAGATTCCAACAAGTGAC 58.529 37.037 0.00 0.00 0.00 3.67
5054 5185 6.672266 TTCTAGAGATTCCAACAAGTGACT 57.328 37.500 0.00 0.00 0.00 3.41
5055 5186 7.776618 TTCTAGAGATTCCAACAAGTGACTA 57.223 36.000 0.00 0.00 0.00 2.59
5056 5187 7.159322 TCTAGAGATTCCAACAAGTGACTAC 57.841 40.000 0.00 0.00 0.00 2.73
5057 5188 5.808366 AGAGATTCCAACAAGTGACTACA 57.192 39.130 0.00 0.00 0.00 2.74
5058 5189 6.365970 AGAGATTCCAACAAGTGACTACAT 57.634 37.500 0.00 0.00 0.00 2.29
5059 5190 7.482169 AGAGATTCCAACAAGTGACTACATA 57.518 36.000 0.00 0.00 0.00 2.29
5060 5191 7.324178 AGAGATTCCAACAAGTGACTACATAC 58.676 38.462 0.00 0.00 0.00 2.39
5061 5192 6.100004 AGATTCCAACAAGTGACTACATACG 58.900 40.000 0.00 0.00 0.00 3.06
5062 5193 5.456548 TTCCAACAAGTGACTACATACGA 57.543 39.130 0.00 0.00 0.00 3.43
5063 5194 5.456548 TCCAACAAGTGACTACATACGAA 57.543 39.130 0.00 0.00 0.00 3.85
5064 5195 5.466819 TCCAACAAGTGACTACATACGAAG 58.533 41.667 0.00 0.00 0.00 3.79
5065 5196 4.091509 CCAACAAGTGACTACATACGAAGC 59.908 45.833 0.00 0.00 0.00 3.86
5066 5197 4.785511 ACAAGTGACTACATACGAAGCT 57.214 40.909 0.00 0.00 0.00 3.74
5067 5198 5.892160 ACAAGTGACTACATACGAAGCTA 57.108 39.130 0.00 0.00 0.00 3.32
5068 5199 6.263516 ACAAGTGACTACATACGAAGCTAA 57.736 37.500 0.00 0.00 0.00 3.09
5069 5200 6.684686 ACAAGTGACTACATACGAAGCTAAA 58.315 36.000 0.00 0.00 0.00 1.85
5070 5201 7.321153 ACAAGTGACTACATACGAAGCTAAAT 58.679 34.615 0.00 0.00 0.00 1.40
5071 5202 7.275779 ACAAGTGACTACATACGAAGCTAAATG 59.724 37.037 0.00 0.00 0.00 2.32
5072 5203 7.096884 AGTGACTACATACGAAGCTAAATGA 57.903 36.000 0.00 0.00 0.00 2.57
5073 5204 7.197017 AGTGACTACATACGAAGCTAAATGAG 58.803 38.462 0.00 0.00 0.00 2.90
5074 5205 6.973474 GTGACTACATACGAAGCTAAATGAGT 59.027 38.462 0.00 0.00 0.00 3.41
5075 5206 6.972901 TGACTACATACGAAGCTAAATGAGTG 59.027 38.462 0.00 0.00 0.00 3.51
5076 5207 7.096884 ACTACATACGAAGCTAAATGAGTGA 57.903 36.000 0.00 0.00 0.00 3.41
5077 5208 7.717568 ACTACATACGAAGCTAAATGAGTGAT 58.282 34.615 0.00 0.00 0.00 3.06
5078 5209 8.198109 ACTACATACGAAGCTAAATGAGTGATT 58.802 33.333 0.00 0.00 0.00 2.57
5079 5210 7.470289 ACATACGAAGCTAAATGAGTGATTC 57.530 36.000 0.00 0.00 0.00 2.52
5080 5211 7.268586 ACATACGAAGCTAAATGAGTGATTCT 58.731 34.615 0.00 0.00 0.00 2.40
5081 5212 8.414003 ACATACGAAGCTAAATGAGTGATTCTA 58.586 33.333 0.00 0.00 0.00 2.10
5082 5213 8.695284 CATACGAAGCTAAATGAGTGATTCTAC 58.305 37.037 0.00 0.00 0.00 2.59
5083 5214 6.631016 ACGAAGCTAAATGAGTGATTCTACA 58.369 36.000 0.00 0.00 0.00 2.74
5084 5215 6.531948 ACGAAGCTAAATGAGTGATTCTACAC 59.468 38.462 0.00 0.00 40.60 2.90
5123 5254 5.838529 CATACATCCGTATGTTGTAGTCCA 58.161 41.667 0.00 0.00 46.70 4.02
5124 5255 6.455647 CATACATCCGTATGTTGTAGTCCAT 58.544 40.000 0.00 0.00 46.70 3.41
5125 5256 5.353394 ACATCCGTATGTTGTAGTCCATT 57.647 39.130 0.00 0.00 44.07 3.16
5126 5257 5.741011 ACATCCGTATGTTGTAGTCCATTT 58.259 37.500 0.00 0.00 44.07 2.32
5127 5258 5.584649 ACATCCGTATGTTGTAGTCCATTTG 59.415 40.000 0.00 0.00 44.07 2.32
5128 5259 5.408880 TCCGTATGTTGTAGTCCATTTGA 57.591 39.130 0.00 0.00 0.00 2.69
5129 5260 5.795972 TCCGTATGTTGTAGTCCATTTGAA 58.204 37.500 0.00 0.00 0.00 2.69
5130 5261 6.231951 TCCGTATGTTGTAGTCCATTTGAAA 58.768 36.000 0.00 0.00 0.00 2.69
5131 5262 6.882140 TCCGTATGTTGTAGTCCATTTGAAAT 59.118 34.615 0.00 0.00 0.00 2.17
5132 5263 8.041919 TCCGTATGTTGTAGTCCATTTGAAATA 58.958 33.333 0.00 0.00 0.00 1.40
5133 5264 8.836413 CCGTATGTTGTAGTCCATTTGAAATAT 58.164 33.333 0.00 0.00 0.00 1.28
5160 5291 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
5161 5292 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5162 5293 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
5163 5294 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
5238 5770 7.961827 CACTAGTCGTAGTTAGTTACCTTCTTG 59.038 40.741 0.00 0.00 37.40 3.02
5245 5777 6.803154 AGTTAGTTACCTTCTTGCATGTTC 57.197 37.500 0.00 0.00 0.00 3.18
5246 5778 6.296026 AGTTAGTTACCTTCTTGCATGTTCA 58.704 36.000 0.00 0.00 0.00 3.18
5283 5815 4.040339 TGTGAGTGAGGCATCTTTGAACTA 59.960 41.667 0.00 0.00 0.00 2.24
5284 5816 4.390297 GTGAGTGAGGCATCTTTGAACTAC 59.610 45.833 0.00 0.00 0.00 2.73
5285 5817 4.284490 TGAGTGAGGCATCTTTGAACTACT 59.716 41.667 0.00 0.00 0.00 2.57
5286 5818 4.826556 AGTGAGGCATCTTTGAACTACTC 58.173 43.478 0.00 0.00 0.00 2.59
5287 5819 4.530161 AGTGAGGCATCTTTGAACTACTCT 59.470 41.667 0.00 0.00 0.00 3.24
5288 5820 5.012561 AGTGAGGCATCTTTGAACTACTCTT 59.987 40.000 0.00 0.00 0.00 2.85
5289 5821 5.703130 GTGAGGCATCTTTGAACTACTCTTT 59.297 40.000 0.00 0.00 0.00 2.52
5290 5822 5.934625 TGAGGCATCTTTGAACTACTCTTTC 59.065 40.000 0.00 0.00 0.00 2.62
5539 6074 4.466726 AGTCCTTTAGCCAACGATAACTCT 59.533 41.667 0.00 0.00 0.00 3.24
5547 6082 4.117685 GCCAACGATAACTCTAATTCGGT 58.882 43.478 0.00 0.00 35.98 4.69
5640 6175 3.745975 TGGCAATCTGTAGTTGTCTTTCG 59.254 43.478 0.00 0.00 32.59 3.46
5665 6200 6.687105 GTGTTAAACTAGTTTCTGTGTGCAAG 59.313 38.462 23.76 0.00 34.23 4.01
6075 6610 8.695456 GGGTTTAAGTTAATCATTCACCATCAT 58.305 33.333 11.99 0.00 0.00 2.45
6096 6631 9.613428 CATCATTTTACAGTACCTGGAGATTAA 57.387 33.333 0.00 0.00 35.51 1.40
6216 6751 8.926715 AATGCCGAGAAAATTATCTTAAAACC 57.073 30.769 0.00 0.00 0.00 3.27
6258 6794 5.867174 GGACCATTTAATTGTTTACCTGTGC 59.133 40.000 0.00 0.00 0.00 4.57
6392 6928 2.574018 CCACTCACCGACTGGAGCA 61.574 63.158 0.00 0.00 39.21 4.26
6678 7214 9.076596 GTATCTCTTGTGGATTTAATGCAAAAC 57.923 33.333 0.00 0.00 30.45 2.43
6679 7215 7.048629 TCTCTTGTGGATTTAATGCAAAACA 57.951 32.000 0.00 0.00 30.45 2.83
6797 7333 2.330216 AGACTTGTAGGTCACTTGCCT 58.670 47.619 0.00 0.00 38.57 4.75
6914 7450 9.729281 AGATGATCCTGCAAATTTTGTTTAATT 57.271 25.926 10.65 0.00 0.00 1.40
7095 7631 5.831997 CATATGTGCTAAAGGCCCTTTTAC 58.168 41.667 15.13 11.71 40.92 2.01
7157 7693 3.155167 GGAGTACCCGCCTCCTGG 61.155 72.222 0.00 0.00 44.29 4.45
7204 7740 1.053424 TGTGCTTTCCGTTCCTAGGT 58.947 50.000 9.08 0.00 0.00 3.08
7206 7742 1.001633 GTGCTTTCCGTTCCTAGGTGA 59.998 52.381 9.08 0.00 0.00 4.02
7237 7778 1.594310 GCCTCTCCTCTTTGCGTCT 59.406 57.895 0.00 0.00 0.00 4.18
7248 7789 3.380142 TCTTTGCGTCTTTTGATTTGCC 58.620 40.909 0.00 0.00 0.00 4.52
7256 7797 1.613437 CTTTTGATTTGCCTGGACGGT 59.387 47.619 0.00 0.00 34.25 4.83
7257 7798 0.958091 TTTGATTTGCCTGGACGGTG 59.042 50.000 0.00 0.00 34.25 4.94
7293 7834 2.603473 CTCACGGTCCAGGGTGGA 60.603 66.667 0.00 0.00 45.98 4.02
7388 7933 2.935955 CGTCACGCTGGTTTGGTC 59.064 61.111 0.00 0.00 0.00 4.02
7395 7940 2.539338 GCTGGTTTGGTCGCGACAA 61.539 57.895 37.26 27.39 0.00 3.18
7415 7960 4.961511 GAGGTGTGTGTCGCGCCA 62.962 66.667 0.00 0.00 45.75 5.69
7421 7966 2.125310 TGTGTCGCGCCAATAGGG 60.125 61.111 0.00 0.00 40.85 3.53
7430 7975 1.301795 GCCAATAGGGTCGGCTAGC 60.302 63.158 6.04 6.04 42.78 3.42
7437 7982 4.814294 GGTCGGCTAGCGTGTGGG 62.814 72.222 9.00 0.00 0.00 4.61
7447 7992 3.322466 CGTGTGGGGCTCCCTCTT 61.322 66.667 0.00 0.00 45.70 2.85
7462 8007 1.897398 CTCTTTCGGGTTGGTTCGCG 61.897 60.000 0.00 0.00 43.33 5.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 7.492344 GTCCCAATAATTTAGGATTTGCAAGTG 59.508 37.037 0.00 0.00 0.00 3.16
6 7 7.327214 GTGTCCCAATAATTTAGGATTTGCAA 58.673 34.615 0.00 0.00 0.00 4.08
92 94 7.348080 AGAACATCTCCAACGTATTCTCATA 57.652 36.000 0.00 0.00 0.00 2.15
96 98 7.876068 TGTTTTAGAACATCTCCAACGTATTCT 59.124 33.333 0.00 0.00 40.71 2.40
113 115 5.113446 TGTGTGGTTAGGGTGTTTTAGAA 57.887 39.130 0.00 0.00 0.00 2.10
124 126 5.995282 TGTTTCTTCTACATGTGTGGTTAGG 59.005 40.000 9.11 0.00 0.00 2.69
150 152 5.580022 ACCACCCTTGCAAAGTATCTAAAT 58.420 37.500 0.00 0.00 44.25 1.40
155 157 5.914898 ATTTACCACCCTTGCAAAGTATC 57.085 39.130 0.00 0.00 44.25 2.24
160 162 5.544176 TGGAAATATTTACCACCCTTGCAAA 59.456 36.000 7.97 0.00 0.00 3.68
207 209 9.494271 CATAAAGGCACATGATAACTACAGTAT 57.506 33.333 0.00 0.00 0.00 2.12
208 210 7.441157 GCATAAAGGCACATGATAACTACAGTA 59.559 37.037 0.00 0.00 0.00 2.74
209 211 6.260936 GCATAAAGGCACATGATAACTACAGT 59.739 38.462 0.00 0.00 0.00 3.55
210 212 6.260714 TGCATAAAGGCACATGATAACTACAG 59.739 38.462 0.00 0.00 39.25 2.74
216 218 6.039270 GGTACTTGCATAAAGGCACATGATAA 59.961 38.462 0.00 0.00 44.86 1.75
230 232 4.720046 TGTTCCAGTTTGGTACTTGCATA 58.280 39.130 6.46 0.00 38.46 3.14
242 244 4.202111 ACGCTTGCTATTTTGTTCCAGTTT 60.202 37.500 0.00 0.00 0.00 2.66
243 245 3.317993 ACGCTTGCTATTTTGTTCCAGTT 59.682 39.130 0.00 0.00 0.00 3.16
848 851 1.841334 TTGAGGGAAAGGGAAAGGGA 58.159 50.000 0.00 0.00 0.00 4.20
1365 1387 0.958382 GCTTGGATACGTGGCCACAA 60.958 55.000 34.16 22.33 42.51 3.33
1956 1981 3.096092 ACCCTCTCTGCTTACTCTTCTG 58.904 50.000 0.00 0.00 0.00 3.02
2259 2284 3.041508 GACTGGGCGTCTCTTTTAACT 57.958 47.619 0.00 0.00 39.61 2.24
2499 2525 3.191371 GCCATGACTTTTTAGGACCTGTG 59.809 47.826 3.53 0.00 0.00 3.66
3459 3494 5.582269 CGATGATGACACAAGACCTTAATGT 59.418 40.000 0.00 0.00 0.00 2.71
3612 3662 6.520272 ACTCTGTAAATGTCCATATGAGAGC 58.480 40.000 3.65 0.00 0.00 4.09
3647 3699 1.034838 ACACACACAAACACGGGCAT 61.035 50.000 0.00 0.00 0.00 4.40
3648 3700 0.392595 TACACACACAAACACGGGCA 60.393 50.000 0.00 0.00 0.00 5.36
3741 3794 7.305474 CGACAATGCCTTTTACTTCTAATTGT 58.695 34.615 0.00 0.00 39.12 2.71
3835 3889 8.668510 ATTTACTGGTGCTTATATCAGTTCAG 57.331 34.615 0.00 0.00 38.87 3.02
3970 4024 3.899052 AACCCAGATAACCGATCGAAA 57.101 42.857 18.66 1.12 39.80 3.46
3983 4037 8.674925 TTCTATTTTCCTACTAGAAACCCAGA 57.325 34.615 0.00 0.00 35.53 3.86
4362 4417 8.911247 AAAGACACTGAATTCAAAGTACAAAC 57.089 30.769 9.88 0.00 0.00 2.93
4524 4645 8.731275 TGGATATTTCTTCGTCAAATATGTGT 57.269 30.769 11.27 0.00 36.82 3.72
4640 4768 9.533253 ACAAATTTCTTGTAGAATCCTTTGTTG 57.467 29.630 13.60 0.00 37.84 3.33
4992 5123 1.275573 GGAACGGAGGGAGTATATGCC 59.724 57.143 0.00 0.00 40.48 4.40
4998 5129 1.961133 ATTTGGGAACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
4999 5130 1.961133 TATTTGGGAACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
5000 5131 4.102681 ACTTATATTTGGGAACGGAGGGAG 59.897 45.833 0.00 0.00 0.00 4.30
5001 5132 4.042174 ACTTATATTTGGGAACGGAGGGA 58.958 43.478 0.00 0.00 0.00 4.20
5002 5133 4.102681 AGACTTATATTTGGGAACGGAGGG 59.897 45.833 0.00 0.00 0.00 4.30
5003 5134 5.291905 AGACTTATATTTGGGAACGGAGG 57.708 43.478 0.00 0.00 0.00 4.30
5004 5135 7.048512 AGAAAGACTTATATTTGGGAACGGAG 58.951 38.462 0.00 0.00 0.00 4.63
5005 5136 6.954232 AGAAAGACTTATATTTGGGAACGGA 58.046 36.000 0.00 0.00 0.00 4.69
5006 5137 8.904099 ATAGAAAGACTTATATTTGGGAACGG 57.096 34.615 0.00 0.00 0.00 4.44
5028 5159 8.474025 AGTCACTTGTTGGAATCTCTAGAATAG 58.526 37.037 0.00 0.00 41.04 1.73
5029 5160 8.367660 AGTCACTTGTTGGAATCTCTAGAATA 57.632 34.615 0.00 0.00 0.00 1.75
5030 5161 7.251321 AGTCACTTGTTGGAATCTCTAGAAT 57.749 36.000 0.00 0.00 0.00 2.40
5031 5162 6.672266 AGTCACTTGTTGGAATCTCTAGAA 57.328 37.500 0.00 0.00 0.00 2.10
5032 5163 6.719829 TGTAGTCACTTGTTGGAATCTCTAGA 59.280 38.462 0.00 0.00 0.00 2.43
5033 5164 6.925211 TGTAGTCACTTGTTGGAATCTCTAG 58.075 40.000 0.00 0.00 0.00 2.43
5034 5165 6.911250 TGTAGTCACTTGTTGGAATCTCTA 57.089 37.500 0.00 0.00 0.00 2.43
5035 5166 5.808366 TGTAGTCACTTGTTGGAATCTCT 57.192 39.130 0.00 0.00 0.00 3.10
5036 5167 6.253727 CGTATGTAGTCACTTGTTGGAATCTC 59.746 42.308 0.00 0.00 0.00 2.75
5037 5168 6.071560 TCGTATGTAGTCACTTGTTGGAATCT 60.072 38.462 0.00 0.00 0.00 2.40
5038 5169 6.097356 TCGTATGTAGTCACTTGTTGGAATC 58.903 40.000 0.00 0.00 0.00 2.52
5039 5170 6.032956 TCGTATGTAGTCACTTGTTGGAAT 57.967 37.500 0.00 0.00 0.00 3.01
5040 5171 5.456548 TCGTATGTAGTCACTTGTTGGAA 57.543 39.130 0.00 0.00 0.00 3.53
5041 5172 5.456548 TTCGTATGTAGTCACTTGTTGGA 57.543 39.130 0.00 0.00 0.00 3.53
5042 5173 4.091509 GCTTCGTATGTAGTCACTTGTTGG 59.908 45.833 0.00 0.00 0.00 3.77
5043 5174 4.923871 AGCTTCGTATGTAGTCACTTGTTG 59.076 41.667 0.00 0.00 0.00 3.33
5044 5175 5.135508 AGCTTCGTATGTAGTCACTTGTT 57.864 39.130 0.00 0.00 0.00 2.83
5045 5176 4.785511 AGCTTCGTATGTAGTCACTTGT 57.214 40.909 0.00 0.00 0.00 3.16
5046 5177 7.488150 TCATTTAGCTTCGTATGTAGTCACTTG 59.512 37.037 0.00 0.00 0.00 3.16
5047 5178 7.544622 TCATTTAGCTTCGTATGTAGTCACTT 58.455 34.615 0.00 0.00 0.00 3.16
5048 5179 7.096884 TCATTTAGCTTCGTATGTAGTCACT 57.903 36.000 0.00 0.00 0.00 3.41
5049 5180 6.973474 ACTCATTTAGCTTCGTATGTAGTCAC 59.027 38.462 0.00 0.00 0.00 3.67
5050 5181 6.972901 CACTCATTTAGCTTCGTATGTAGTCA 59.027 38.462 0.00 0.00 0.00 3.41
5051 5182 7.194278 TCACTCATTTAGCTTCGTATGTAGTC 58.806 38.462 0.00 0.00 0.00 2.59
5052 5183 7.096884 TCACTCATTTAGCTTCGTATGTAGT 57.903 36.000 0.00 0.00 0.00 2.73
5053 5184 8.581057 AATCACTCATTTAGCTTCGTATGTAG 57.419 34.615 0.00 0.00 0.00 2.74
5054 5185 8.414003 AGAATCACTCATTTAGCTTCGTATGTA 58.586 33.333 0.00 0.00 0.00 2.29
5055 5186 7.268586 AGAATCACTCATTTAGCTTCGTATGT 58.731 34.615 0.00 0.00 0.00 2.29
5056 5187 7.706281 AGAATCACTCATTTAGCTTCGTATG 57.294 36.000 0.00 0.00 0.00 2.39
5057 5188 8.414003 TGTAGAATCACTCATTTAGCTTCGTAT 58.586 33.333 0.00 0.00 0.00 3.06
5058 5189 7.701078 GTGTAGAATCACTCATTTAGCTTCGTA 59.299 37.037 0.00 0.00 35.68 3.43
5059 5190 6.531948 GTGTAGAATCACTCATTTAGCTTCGT 59.468 38.462 0.00 0.00 35.68 3.85
5060 5191 6.754209 AGTGTAGAATCACTCATTTAGCTTCG 59.246 38.462 0.00 0.00 44.07 3.79
5101 5232 6.665992 ATGGACTACAACATACGGATGTAT 57.334 37.500 15.10 8.21 45.93 2.29
5102 5233 6.474140 AATGGACTACAACATACGGATGTA 57.526 37.500 15.10 0.00 45.93 2.29
5104 5235 5.815222 TCAAATGGACTACAACATACGGATG 59.185 40.000 5.94 5.94 39.16 3.51
5105 5236 5.984725 TCAAATGGACTACAACATACGGAT 58.015 37.500 0.00 0.00 0.00 4.18
5106 5237 5.408880 TCAAATGGACTACAACATACGGA 57.591 39.130 0.00 0.00 0.00 4.69
5107 5238 6.489127 TTTCAAATGGACTACAACATACGG 57.511 37.500 0.00 0.00 0.00 4.02
5134 5265 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
5135 5266 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
5136 5267 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5137 5268 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5138 5269 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5139 5270 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
5140 5271 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
5141 5272 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
5142 5273 6.210185 GCTACTCCCTCCGTTCCTAAATATAA 59.790 42.308 0.00 0.00 0.00 0.98
5143 5274 5.713861 GCTACTCCCTCCGTTCCTAAATATA 59.286 44.000 0.00 0.00 0.00 0.86
5144 5275 4.527427 GCTACTCCCTCCGTTCCTAAATAT 59.473 45.833 0.00 0.00 0.00 1.28
5145 5276 3.893813 GCTACTCCCTCCGTTCCTAAATA 59.106 47.826 0.00 0.00 0.00 1.40
5146 5277 2.699321 GCTACTCCCTCCGTTCCTAAAT 59.301 50.000 0.00 0.00 0.00 1.40
5147 5278 2.105766 GCTACTCCCTCCGTTCCTAAA 58.894 52.381 0.00 0.00 0.00 1.85
5148 5279 1.287146 AGCTACTCCCTCCGTTCCTAA 59.713 52.381 0.00 0.00 0.00 2.69
5149 5280 0.924823 AGCTACTCCCTCCGTTCCTA 59.075 55.000 0.00 0.00 0.00 2.94
5150 5281 0.041386 AAGCTACTCCCTCCGTTCCT 59.959 55.000 0.00 0.00 0.00 3.36
5151 5282 0.903236 AAAGCTACTCCCTCCGTTCC 59.097 55.000 0.00 0.00 0.00 3.62
5152 5283 2.028385 TCAAAAGCTACTCCCTCCGTTC 60.028 50.000 0.00 0.00 0.00 3.95
5153 5284 1.975680 TCAAAAGCTACTCCCTCCGTT 59.024 47.619 0.00 0.00 0.00 4.44
5154 5285 1.275573 GTCAAAAGCTACTCCCTCCGT 59.724 52.381 0.00 0.00 0.00 4.69
5155 5286 1.275291 TGTCAAAAGCTACTCCCTCCG 59.725 52.381 0.00 0.00 0.00 4.63
5156 5287 3.636153 ATGTCAAAAGCTACTCCCTCC 57.364 47.619 0.00 0.00 0.00 4.30
5157 5288 4.633565 CAGAATGTCAAAAGCTACTCCCTC 59.366 45.833 0.00 0.00 0.00 4.30
5158 5289 4.566488 CCAGAATGTCAAAAGCTACTCCCT 60.566 45.833 0.00 0.00 0.00 4.20
5159 5290 3.691609 CCAGAATGTCAAAAGCTACTCCC 59.308 47.826 0.00 0.00 0.00 4.30
5160 5291 3.691609 CCCAGAATGTCAAAAGCTACTCC 59.308 47.826 0.00 0.00 0.00 3.85
5161 5292 4.154918 CACCCAGAATGTCAAAAGCTACTC 59.845 45.833 0.00 0.00 0.00 2.59
5162 5293 4.074970 CACCCAGAATGTCAAAAGCTACT 58.925 43.478 0.00 0.00 0.00 2.57
5163 5294 3.821033 ACACCCAGAATGTCAAAAGCTAC 59.179 43.478 0.00 0.00 0.00 3.58
5245 5777 3.009723 ACTCACAAGTCACAACAAGGTG 58.990 45.455 0.00 0.00 40.16 4.00
5246 5778 3.009723 CACTCACAAGTCACAACAAGGT 58.990 45.455 0.00 0.00 31.71 3.50
5301 5833 0.960364 TTCAAAGATGCCTCACCCGC 60.960 55.000 0.00 0.00 0.00 6.13
5388 5923 1.201647 TGTTTCTAGAAGTCGCCTCCG 59.798 52.381 5.12 0.00 0.00 4.63
5539 6074 7.440255 GGTATAAAAGCTAGCTTCACCGAATTA 59.560 37.037 29.42 20.90 34.84 1.40
5547 6082 6.049955 ACACAGGTATAAAAGCTAGCTTCA 57.950 37.500 29.42 20.24 34.84 3.02
5640 6175 6.114221 TGCACACAGAAACTAGTTTAACAC 57.886 37.500 20.58 8.58 32.11 3.32
5665 6200 3.496155 CCGAAAATCTGAGCTGAAAAGC 58.504 45.455 0.00 0.00 0.00 3.51
6019 6554 1.143684 ACCTGGTCAATGCAGACAACT 59.856 47.619 8.22 0.00 40.29 3.16
6236 6772 5.305644 TGGCACAGGTAAACAATTAAATGGT 59.694 36.000 0.00 0.00 0.00 3.55
6258 6794 6.313905 GCATAACACTCCTAATAATCCGATGG 59.686 42.308 0.00 0.00 0.00 3.51
6392 6928 3.434309 AGTTGGAAATAAGCCAGCATGT 58.566 40.909 0.00 0.00 38.88 3.21
6678 7214 0.439985 CTCACTGAATTCACGCCGTG 59.560 55.000 11.80 11.80 34.45 4.94
6679 7215 0.317160 TCTCACTGAATTCACGCCGT 59.683 50.000 3.38 0.00 0.00 5.68
6914 7450 6.320926 TGTTAAATAAGCTAGGATGCATGCAA 59.679 34.615 26.68 7.10 34.99 4.08
7141 7677 3.155167 CCCAGGAGGCGGGTACTC 61.155 72.222 0.00 0.00 39.05 2.59
7223 7759 4.756084 AATCAAAAGACGCAAAGAGGAG 57.244 40.909 0.00 0.00 0.00 3.69
7225 7761 3.426525 GCAAATCAAAAGACGCAAAGAGG 59.573 43.478 0.00 0.00 0.00 3.69
7237 7778 1.339610 CACCGTCCAGGCAAATCAAAA 59.660 47.619 0.00 0.00 46.52 2.44
7302 7847 0.034574 AAACCCGCCACATGATAGCA 60.035 50.000 0.00 0.00 0.00 3.49
7402 7947 1.739929 CCTATTGGCGCGACACACA 60.740 57.895 18.02 0.00 0.00 3.72
7415 7960 1.041447 ACACGCTAGCCGACCCTATT 61.041 55.000 9.66 0.00 41.02 1.73
7421 7966 4.814294 CCCCACACGCTAGCCGAC 62.814 72.222 9.66 0.00 41.02 4.79
7447 7992 4.912485 TGCGCGAACCAACCCGAA 62.912 61.111 12.10 0.00 0.00 4.30
7462 8007 3.807538 CACACCTGGCTCGCATGC 61.808 66.667 7.91 7.91 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.