Multiple sequence alignment - TraesCS4A01G194900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G194900 chr4A 100.000 4991 0 0 1 4991 477023706 477018716 0.000000e+00 9217
1 TraesCS4A01G194900 chr4D 92.026 3173 224 12 626 3783 98944660 98947818 0.000000e+00 4431
2 TraesCS4A01G194900 chr4D 92.514 1229 68 11 3781 4988 98947861 98949086 0.000000e+00 1738
3 TraesCS4A01G194900 chr4D 80.534 524 70 19 84 598 98944160 98944660 1.700000e-99 374
4 TraesCS4A01G194900 chr4B 91.351 3191 228 16 626 3783 140920990 140924165 0.000000e+00 4320
5 TraesCS4A01G194900 chr4B 85.455 550 40 17 4115 4654 140924637 140925156 2.040000e-148 536
6 TraesCS4A01G194900 chr4B 88.102 353 27 7 3781 4120 140924208 140924558 6.020000e-109 405
7 TraesCS4A01G194900 chr4B 91.398 279 23 1 4714 4991 140932626 140932904 1.010000e-101 381


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G194900 chr4A 477018716 477023706 4990 True 9217.000000 9217 100.000000 1 4991 1 chr4A.!!$R1 4990
1 TraesCS4A01G194900 chr4D 98944160 98949086 4926 False 2181.000000 4431 88.358000 84 4988 3 chr4D.!!$F1 4904
2 TraesCS4A01G194900 chr4B 140920990 140925156 4166 False 1753.666667 4320 88.302667 626 4654 3 chr4B.!!$F2 4028

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 92 0.251354 TGATTCAGACTCAGCCTGCC 59.749 55.0 0.0 0.0 0.00 4.85 F
400 401 0.253044 TTCAGCCCACATAGGACAGC 59.747 55.0 0.0 0.0 41.22 4.40 F
1549 1607 0.179032 TGGTCGGCAGAAAGAAGCAA 60.179 50.0 0.0 0.0 0.00 3.91 F
2789 2852 0.610232 ACAAGGATGAAGTGCCTGCC 60.610 55.0 0.0 0.0 34.00 4.85 F
3629 3692 0.250467 TCCTTGCCAAGCAGAGACAC 60.250 55.0 0.0 0.0 40.61 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1425 1483 0.381801 CACGCAAGAACCACAAGCTT 59.618 50.0 0.00 0.0 43.62 3.74 R
2142 2200 0.250901 AAAATGTCTCCGCTGCCTGT 60.251 50.0 0.00 0.0 0.00 4.00 R
3361 3424 0.031616 TTCAGCCAGTTTGGGGGTTT 60.032 50.0 0.00 0.0 38.19 3.27 R
3678 3741 0.036294 GGTCTTCGGGTTCCTTCAGG 60.036 60.0 0.00 0.0 0.00 3.86 R
4766 4981 0.451383 CAATTTCCGCGATGCTGGAA 59.549 50.0 8.23 0.0 38.59 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.706691 ACCTTATATTGTTATATTGTGAGACGG 57.293 33.333 0.00 0.00 0.00 4.79
46 47 9.923143 CCTTATATTGTTATATTGTGAGACGGA 57.077 33.333 0.00 0.00 0.00 4.69
48 49 9.923143 TTATATTGTTATATTGTGAGACGGAGG 57.077 33.333 0.00 0.00 0.00 4.30
49 50 4.665833 TGTTATATTGTGAGACGGAGGG 57.334 45.455 0.00 0.00 0.00 4.30
50 51 4.283337 TGTTATATTGTGAGACGGAGGGA 58.717 43.478 0.00 0.00 0.00 4.20
51 52 4.341235 TGTTATATTGTGAGACGGAGGGAG 59.659 45.833 0.00 0.00 0.00 4.30
52 53 2.526888 TATTGTGAGACGGAGGGAGT 57.473 50.000 0.00 0.00 0.00 3.85
53 54 2.526888 ATTGTGAGACGGAGGGAGTA 57.473 50.000 0.00 0.00 0.00 2.59
54 55 2.297698 TTGTGAGACGGAGGGAGTAA 57.702 50.000 0.00 0.00 0.00 2.24
55 56 1.542492 TGTGAGACGGAGGGAGTAAC 58.458 55.000 0.00 0.00 0.00 2.50
56 57 1.075050 TGTGAGACGGAGGGAGTAACT 59.925 52.381 0.00 0.00 0.00 2.24
57 58 1.473278 GTGAGACGGAGGGAGTAACTG 59.527 57.143 0.00 0.00 0.00 3.16
58 59 1.075050 TGAGACGGAGGGAGTAACTGT 59.925 52.381 0.00 0.00 0.00 3.55
59 60 2.169330 GAGACGGAGGGAGTAACTGTT 58.831 52.381 0.00 0.00 0.00 3.16
60 61 3.245016 TGAGACGGAGGGAGTAACTGTTA 60.245 47.826 0.00 0.00 0.00 2.41
61 62 3.354467 AGACGGAGGGAGTAACTGTTAG 58.646 50.000 0.00 0.00 0.00 2.34
62 63 3.087781 GACGGAGGGAGTAACTGTTAGT 58.912 50.000 7.59 7.59 0.00 2.24
63 64 4.018960 AGACGGAGGGAGTAACTGTTAGTA 60.019 45.833 7.83 0.00 0.00 1.82
64 65 4.013050 ACGGAGGGAGTAACTGTTAGTAC 58.987 47.826 8.80 8.80 0.00 2.73
65 66 4.012374 CGGAGGGAGTAACTGTTAGTACA 58.988 47.826 17.19 0.00 0.00 2.90
66 67 4.460382 CGGAGGGAGTAACTGTTAGTACAA 59.540 45.833 17.19 0.00 32.92 2.41
67 68 5.392811 CGGAGGGAGTAACTGTTAGTACAAG 60.393 48.000 17.19 4.04 32.92 3.16
68 69 5.402997 AGGGAGTAACTGTTAGTACAAGC 57.597 43.478 17.19 2.95 32.92 4.01
69 70 4.222366 AGGGAGTAACTGTTAGTACAAGCC 59.778 45.833 17.19 9.76 32.92 4.35
70 71 4.020839 GGGAGTAACTGTTAGTACAAGCCA 60.021 45.833 17.19 0.00 32.92 4.75
71 72 5.511888 GGGAGTAACTGTTAGTACAAGCCAA 60.512 44.000 17.19 0.00 32.92 4.52
72 73 6.171213 GGAGTAACTGTTAGTACAAGCCAAT 58.829 40.000 11.86 0.00 32.92 3.16
73 74 6.092259 GGAGTAACTGTTAGTACAAGCCAATG 59.908 42.308 11.86 0.00 32.92 2.82
74 75 6.765403 AGTAACTGTTAGTACAAGCCAATGA 58.235 36.000 6.11 0.00 32.92 2.57
75 76 7.394816 AGTAACTGTTAGTACAAGCCAATGAT 58.605 34.615 6.11 0.00 32.92 2.45
76 77 7.883311 AGTAACTGTTAGTACAAGCCAATGATT 59.117 33.333 6.11 0.00 32.92 2.57
77 78 6.743575 ACTGTTAGTACAAGCCAATGATTC 57.256 37.500 0.00 0.00 32.92 2.52
78 79 6.237901 ACTGTTAGTACAAGCCAATGATTCA 58.762 36.000 0.00 0.00 32.92 2.57
79 80 6.372659 ACTGTTAGTACAAGCCAATGATTCAG 59.627 38.462 0.00 0.00 32.92 3.02
80 81 6.472016 TGTTAGTACAAGCCAATGATTCAGA 58.528 36.000 0.00 0.00 0.00 3.27
81 82 6.371548 TGTTAGTACAAGCCAATGATTCAGAC 59.628 38.462 0.00 0.00 0.00 3.51
82 83 5.171339 AGTACAAGCCAATGATTCAGACT 57.829 39.130 0.00 0.00 0.00 3.24
85 86 4.008330 ACAAGCCAATGATTCAGACTCAG 58.992 43.478 0.00 0.00 0.00 3.35
91 92 0.251354 TGATTCAGACTCAGCCTGCC 59.749 55.000 0.00 0.00 0.00 4.85
97 98 0.610687 AGACTCAGCCTGCCACTAAC 59.389 55.000 0.00 0.00 0.00 2.34
101 102 2.169352 ACTCAGCCTGCCACTAACATAG 59.831 50.000 0.00 0.00 0.00 2.23
111 112 6.710295 CCTGCCACTAACATAGCATACATTAA 59.290 38.462 0.00 0.00 34.16 1.40
114 115 9.130661 TGCCACTAACATAGCATACATTAATTT 57.869 29.630 0.00 0.00 0.00 1.82
175 176 1.080025 GTCGCCGCTCTAACAACCT 60.080 57.895 0.00 0.00 0.00 3.50
179 180 1.291132 GCCGCTCTAACAACCTCATC 58.709 55.000 0.00 0.00 0.00 2.92
181 182 1.135083 CCGCTCTAACAACCTCATCGT 60.135 52.381 0.00 0.00 0.00 3.73
183 184 2.415491 CGCTCTAACAACCTCATCGTCA 60.415 50.000 0.00 0.00 0.00 4.35
187 188 5.400066 TCTAACAACCTCATCGTCATTCA 57.600 39.130 0.00 0.00 0.00 2.57
190 191 4.271696 ACAACCTCATCGTCATTCAGAA 57.728 40.909 0.00 0.00 0.00 3.02
222 223 3.732212 TGCTCCATGAACCGATAATCTG 58.268 45.455 0.00 0.00 0.00 2.90
223 224 3.134623 TGCTCCATGAACCGATAATCTGT 59.865 43.478 0.00 0.00 0.00 3.41
225 226 4.686554 GCTCCATGAACCGATAATCTGTAC 59.313 45.833 0.00 0.00 0.00 2.90
250 251 5.276440 TGTCCCCAACAAAAATATATGCCT 58.724 37.500 0.00 0.00 34.03 4.75
252 253 5.362430 GTCCCCAACAAAAATATATGCCTCA 59.638 40.000 0.00 0.00 0.00 3.86
255 256 5.697633 CCCAACAAAAATATATGCCTCATGC 59.302 40.000 0.00 0.00 41.77 4.06
257 258 4.549458 ACAAAAATATATGCCTCATGCGC 58.451 39.130 0.00 0.00 45.60 6.09
258 259 3.855689 AAAATATATGCCTCATGCGCC 57.144 42.857 4.18 0.00 45.60 6.53
259 260 2.495155 AATATATGCCTCATGCGCCA 57.505 45.000 4.18 0.00 45.60 5.69
260 261 1.742761 ATATATGCCTCATGCGCCAC 58.257 50.000 4.18 0.00 45.60 5.01
261 262 0.321564 TATATGCCTCATGCGCCACC 60.322 55.000 4.18 0.00 45.60 4.61
264 265 3.372730 GCCTCATGCGCCACCAAA 61.373 61.111 4.18 0.00 0.00 3.28
266 267 2.568090 CTCATGCGCCACCAAACC 59.432 61.111 4.18 0.00 0.00 3.27
268 269 2.049248 CATGCGCCACCAAACCAC 60.049 61.111 4.18 0.00 0.00 4.16
269 270 2.520500 ATGCGCCACCAAACCACA 60.521 55.556 4.18 0.00 0.00 4.17
270 271 1.907807 ATGCGCCACCAAACCACAT 60.908 52.632 4.18 0.00 0.00 3.21
272 273 1.664333 GCGCCACCAAACCACATTG 60.664 57.895 0.00 0.00 0.00 2.82
274 275 0.602562 CGCCACCAAACCACATTGAT 59.397 50.000 0.00 0.00 31.84 2.57
275 276 1.000731 CGCCACCAAACCACATTGATT 59.999 47.619 0.00 0.00 31.84 2.57
276 277 2.547642 CGCCACCAAACCACATTGATTT 60.548 45.455 0.00 0.00 31.84 2.17
277 278 3.475575 GCCACCAAACCACATTGATTTT 58.524 40.909 0.00 0.00 31.84 1.82
278 279 3.250521 GCCACCAAACCACATTGATTTTG 59.749 43.478 0.00 0.00 31.84 2.44
279 280 4.450053 CCACCAAACCACATTGATTTTGT 58.550 39.130 0.00 0.00 31.84 2.83
280 281 4.272991 CCACCAAACCACATTGATTTTGTG 59.727 41.667 0.00 0.00 43.25 3.33
281 282 5.114780 CACCAAACCACATTGATTTTGTGA 58.885 37.500 5.43 0.00 45.83 3.58
282 283 5.759273 CACCAAACCACATTGATTTTGTGAT 59.241 36.000 5.43 0.00 45.83 3.06
283 284 5.759273 ACCAAACCACATTGATTTTGTGATG 59.241 36.000 5.43 2.45 45.83 3.07
298 299 1.780860 GTGATGACACAAAACAAGCGC 59.219 47.619 0.00 0.00 45.32 5.92
308 309 0.798776 AAACAAGCGCTGATCCTTCG 59.201 50.000 12.58 0.00 0.00 3.79
328 329 7.768582 TCCTTCGCTTAATTTCTCATGACAATA 59.231 33.333 0.00 0.00 0.00 1.90
333 334 7.164826 CGCTTAATTTCTCATGACAATAGTTGC 59.835 37.037 0.00 0.00 0.00 4.17
336 337 4.952262 TTCTCATGACAATAGTTGCTGC 57.048 40.909 0.00 0.00 0.00 5.25
349 350 2.103771 AGTTGCTGCTTCTGAACAGAGA 59.896 45.455 18.02 7.43 38.88 3.10
386 387 1.852633 AGGGCCATTAACCTTTCAGC 58.147 50.000 6.18 0.00 31.68 4.26
388 389 0.824109 GGCCATTAACCTTTCAGCCC 59.176 55.000 0.00 0.00 32.68 5.19
392 393 3.099141 CCATTAACCTTTCAGCCCACAT 58.901 45.455 0.00 0.00 0.00 3.21
398 399 1.281867 CCTTTCAGCCCACATAGGACA 59.718 52.381 0.00 0.00 41.22 4.02
400 401 0.253044 TTCAGCCCACATAGGACAGC 59.747 55.000 0.00 0.00 41.22 4.40
401 402 0.618680 TCAGCCCACATAGGACAGCT 60.619 55.000 0.00 0.00 41.22 4.24
403 404 1.123928 AGCCCACATAGGACAGCTAC 58.876 55.000 0.00 0.00 41.22 3.58
406 407 2.743183 GCCCACATAGGACAGCTACAAG 60.743 54.545 0.00 0.00 41.22 3.16
407 408 2.555199 CCACATAGGACAGCTACAAGC 58.445 52.381 0.00 0.00 40.18 4.01
435 463 9.593565 ACTGACTTCACCAGATCTATATATGAA 57.406 33.333 0.00 0.95 35.69 2.57
437 465 9.813826 TGACTTCACCAGATCTATATATGAAGA 57.186 33.333 25.20 11.91 42.60 2.87
548 576 7.235606 AGGCTCACTGCTTATTAATGTATCCTA 59.764 37.037 0.00 0.00 42.39 2.94
585 613 1.056660 ACCACCCAGTTGACTACCAG 58.943 55.000 0.00 0.00 0.00 4.00
590 618 1.512926 CCAGTTGACTACCAGCACAC 58.487 55.000 0.00 0.00 0.00 3.82
609 637 2.882876 GCAGCAGGCACATCAAGG 59.117 61.111 0.00 0.00 43.97 3.61
610 638 1.676635 GCAGCAGGCACATCAAGGA 60.677 57.895 0.00 0.00 43.97 3.36
611 639 1.035932 GCAGCAGGCACATCAAGGAT 61.036 55.000 0.00 0.00 43.97 3.24
612 640 1.022735 CAGCAGGCACATCAAGGATC 58.977 55.000 0.00 0.00 0.00 3.36
613 641 0.622136 AGCAGGCACATCAAGGATCA 59.378 50.000 0.00 0.00 0.00 2.92
614 642 1.214673 AGCAGGCACATCAAGGATCAT 59.785 47.619 0.00 0.00 0.00 2.45
615 643 1.337071 GCAGGCACATCAAGGATCATG 59.663 52.381 0.00 0.00 0.00 3.07
616 644 1.954382 CAGGCACATCAAGGATCATGG 59.046 52.381 0.00 0.00 0.00 3.66
617 645 1.567649 AGGCACATCAAGGATCATGGT 59.432 47.619 0.00 0.00 0.00 3.55
618 646 2.024655 AGGCACATCAAGGATCATGGTT 60.025 45.455 0.00 0.00 0.00 3.67
619 647 3.202818 AGGCACATCAAGGATCATGGTTA 59.797 43.478 0.00 0.00 0.00 2.85
620 648 3.953612 GGCACATCAAGGATCATGGTTAA 59.046 43.478 0.00 0.00 0.00 2.01
621 649 4.202050 GGCACATCAAGGATCATGGTTAAC 60.202 45.833 0.00 0.00 0.00 2.01
622 650 4.202050 GCACATCAAGGATCATGGTTAACC 60.202 45.833 18.27 18.27 0.00 2.85
623 651 4.339247 CACATCAAGGATCATGGTTAACCC 59.661 45.833 21.97 5.75 34.29 4.11
657 685 3.448267 ACAGATGCATGTGAGTCCG 57.552 52.632 28.81 2.94 30.46 4.79
658 686 0.610174 ACAGATGCATGTGAGTCCGT 59.390 50.000 28.81 3.68 30.46 4.69
659 687 1.284657 CAGATGCATGTGAGTCCGTC 58.715 55.000 18.63 0.00 0.00 4.79
676 704 4.201657 TCCGTCGGACATTGTATCTTCTA 58.798 43.478 10.71 0.00 0.00 2.10
704 732 3.780850 GGGGGAAGAAGGTTCAGATAAGA 59.219 47.826 0.00 0.00 0.00 2.10
710 738 4.775236 AGAAGGTTCAGATAAGATGGCAC 58.225 43.478 0.00 0.00 0.00 5.01
713 741 3.776969 AGGTTCAGATAAGATGGCACTGA 59.223 43.478 0.00 0.00 36.11 3.41
729 763 4.702131 GGCACTGAATTCCTGTGTTATTCT 59.298 41.667 21.67 0.00 43.87 2.40
733 767 7.115378 GCACTGAATTCCTGTGTTATTCTTTTG 59.885 37.037 21.67 2.31 43.87 2.44
752 786 5.514500 TTTGCCCTCCTAACTAACTTGAT 57.486 39.130 0.00 0.00 0.00 2.57
757 791 5.429130 CCCTCCTAACTAACTTGATTGACC 58.571 45.833 0.00 0.00 0.00 4.02
759 793 6.109359 CCTCCTAACTAACTTGATTGACCAG 58.891 44.000 0.00 0.00 0.00 4.00
763 797 4.623932 ACTAACTTGATTGACCAGCTGA 57.376 40.909 17.39 0.00 0.00 4.26
799 833 1.840650 CCGGCCCTGGATCAGATCT 60.841 63.158 10.36 0.00 32.44 2.75
808 842 5.688500 GCCCTGGATCAGATCTTATGTTCAA 60.689 44.000 10.36 0.00 32.44 2.69
811 845 7.052873 CCTGGATCAGATCTTATGTTCAAAGT 58.947 38.462 10.36 0.00 32.44 2.66
842 876 8.568794 TGATAATAGAATAGGAACAGACAGTCG 58.431 37.037 0.00 0.00 0.00 4.18
875 910 7.333528 AGCCGCATTAAAGAATTGAGATAAA 57.666 32.000 0.00 0.00 0.00 1.40
877 912 6.972328 GCCGCATTAAAGAATTGAGATAAACA 59.028 34.615 0.00 0.00 0.00 2.83
909 944 7.201848 CCAGTTAAGCATACACCATTGATCAAT 60.202 37.037 15.36 15.36 0.00 2.57
936 971 2.623915 GCTGCCAACTGAGCTGTGG 61.624 63.158 0.00 0.00 32.12 4.17
939 974 1.072159 GCCAACTGAGCTGTGGAGT 59.928 57.895 0.00 0.00 0.00 3.85
966 1001 5.492524 TGGAAGGTTTAATCATCCTCTTCCT 59.507 40.000 16.78 0.00 45.22 3.36
1078 1114 1.898154 GCCGACCCTGTGATACAGT 59.102 57.895 8.04 0.00 44.50 3.55
1098 1134 1.821216 ATGCAAAGGACCGGTACAAG 58.179 50.000 21.66 9.30 0.00 3.16
1113 1149 4.392138 CGGTACAAGGACCAGAAGAATTTC 59.608 45.833 1.81 0.00 39.72 2.17
1117 1153 4.065088 CAAGGACCAGAAGAATTTCGTGA 58.935 43.478 0.00 0.00 38.38 4.35
1128 1164 1.956297 ATTTCGTGACCAACACCGAA 58.044 45.000 0.00 0.00 45.73 4.30
1143 1179 1.441016 CGAAAAGCTCAAGTGGCGC 60.441 57.895 0.00 0.00 34.52 6.53
1146 1182 1.109323 AAAAGCTCAAGTGGCGCCTT 61.109 50.000 29.70 12.19 34.52 4.35
1209 1245 5.933463 GGAAGTTGATGATTCCAAATTGCAA 59.067 36.000 0.00 0.00 43.75 4.08
1301 1337 1.529865 GTTGAAGCACCAGGTAACGAC 59.470 52.381 0.00 0.00 46.39 4.34
1302 1338 1.045407 TGAAGCACCAGGTAACGACT 58.955 50.000 0.00 0.00 46.39 4.18
1305 1341 1.045407 AGCACCAGGTAACGACTGAA 58.955 50.000 0.00 0.00 46.39 3.02
1307 1343 1.539496 GCACCAGGTAACGACTGAACA 60.539 52.381 0.00 0.00 46.39 3.18
1313 1355 2.159014 AGGTAACGACTGAACACAAGCA 60.159 45.455 0.00 0.00 46.39 3.91
1315 1357 3.991773 GGTAACGACTGAACACAAGCATA 59.008 43.478 0.00 0.00 0.00 3.14
1318 1360 6.479001 GGTAACGACTGAACACAAGCATATAT 59.521 38.462 0.00 0.00 0.00 0.86
1329 1371 9.547753 GAACACAAGCATATATTTTCTCCTAGA 57.452 33.333 0.00 0.00 0.00 2.43
1346 1388 7.271511 TCTCCTAGAAAAGATGCTTCTGATTC 58.728 38.462 15.27 15.27 34.90 2.52
1351 1393 7.477945 AGAAAAGATGCTTCTGATTCCATTT 57.522 32.000 17.67 8.16 32.76 2.32
1361 1419 4.996793 TCTGATTCCATTTCCCAAGACAA 58.003 39.130 0.00 0.00 0.00 3.18
1365 1423 7.016465 TCTGATTCCATTTCCCAAGACAAAAAT 59.984 33.333 0.00 0.00 0.00 1.82
1374 1432 3.057315 CCCAAGACAAAAATGACGCTGAT 60.057 43.478 0.00 0.00 0.00 2.90
1375 1433 4.155826 CCCAAGACAAAAATGACGCTGATA 59.844 41.667 0.00 0.00 0.00 2.15
1383 1441 6.305399 ACAAAAATGACGCTGATAATTTGACG 59.695 34.615 0.00 0.00 32.45 4.35
1406 1464 7.254852 ACGAAAGTCATTAAAAAGCTTGACAA 58.745 30.769 14.63 3.57 44.19 3.18
1407 1465 7.220108 ACGAAAGTCATTAAAAAGCTTGACAAC 59.780 33.333 14.63 6.08 44.19 3.32
1408 1466 7.449934 AAAGTCATTAAAAAGCTTGACAACG 57.550 32.000 14.63 0.00 40.69 4.10
1416 1474 0.304705 AGCTTGACAACGTTTCTGCG 59.695 50.000 0.00 0.00 37.94 5.18
1425 1483 0.888619 ACGTTTCTGCGGAGATGAGA 59.111 50.000 7.71 0.00 35.98 3.27
1434 1492 1.649664 CGGAGATGAGAAGCTTGTGG 58.350 55.000 2.10 0.00 0.00 4.17
1488 1546 0.251354 TGCCTGATCAAGCTCCTGAC 59.749 55.000 16.96 0.00 0.00 3.51
1524 1582 1.334960 GCATCCGACACACAACCAAAG 60.335 52.381 0.00 0.00 0.00 2.77
1549 1607 0.179032 TGGTCGGCAGAAAGAAGCAA 60.179 50.000 0.00 0.00 0.00 3.91
1554 1612 3.084039 TCGGCAGAAAGAAGCAAATGAT 58.916 40.909 0.00 0.00 0.00 2.45
1561 1619 6.404403 GCAGAAAGAAGCAAATGATCTCATGA 60.404 38.462 0.00 0.00 36.56 3.07
1563 1621 5.831702 AAGAAGCAAATGATCTCATGACC 57.168 39.130 0.00 0.00 36.56 4.02
1566 1624 6.656902 AGAAGCAAATGATCTCATGACCTTA 58.343 36.000 0.00 0.00 36.56 2.69
1572 1630 8.844244 GCAAATGATCTCATGACCTTATTACTT 58.156 33.333 0.00 0.00 36.56 2.24
1575 1633 9.775854 AATGATCTCATGACCTTATTACTTGAG 57.224 33.333 0.00 0.00 36.56 3.02
1577 1635 6.798427 TCTCATGACCTTATTACTTGAGCT 57.202 37.500 0.00 0.00 36.47 4.09
1585 1643 7.665559 TGACCTTATTACTTGAGCTTGAACAAT 59.334 33.333 0.00 0.00 0.00 2.71
1597 1655 6.545666 TGAGCTTGAACAATGTAAGGAGAAAA 59.454 34.615 0.00 0.00 0.00 2.29
1604 1662 7.719193 TGAACAATGTAAGGAGAAAATCTCACA 59.281 33.333 9.40 5.77 45.12 3.58
1665 1723 0.899720 TCGTCCGGGAAGCTTACAAT 59.100 50.000 11.69 0.00 0.00 2.71
1670 1728 4.448210 GTCCGGGAAGCTTACAATGATAA 58.552 43.478 11.69 0.00 0.00 1.75
1689 1747 1.972872 ACAGAACAGACTGCTTTGGG 58.027 50.000 1.25 0.00 41.06 4.12
1697 1755 1.527433 GACTGCTTTGGGGTGAAGGC 61.527 60.000 0.00 0.00 0.00 4.35
1737 1795 1.303888 AGCCAGCATCACAAGGGTG 60.304 57.895 0.00 0.00 46.66 4.61
1746 1804 3.194116 GCATCACAAGGGTGTTGATTGAT 59.806 43.478 9.41 0.00 44.04 2.57
1887 1945 5.186409 GGATGACATATGGGATTGGGATTTG 59.814 44.000 7.80 0.00 0.00 2.32
1905 1963 6.378280 GGGATTTGTCAAGAAACATACTGGAT 59.622 38.462 0.00 0.00 0.00 3.41
1908 1966 3.684305 TGTCAAGAAACATACTGGATGCG 59.316 43.478 0.00 0.00 39.39 4.73
1926 1984 3.963665 TGCGTTCAATATGCCATTTAGC 58.036 40.909 0.00 0.00 38.02 3.09
1971 2029 2.306341 TAGTCACTACTCGAGACCCG 57.694 55.000 21.68 6.46 37.15 5.28
1997 2055 5.303078 GCATAGGAGAAGGAATGAGTACAGA 59.697 44.000 0.00 0.00 0.00 3.41
2003 2061 2.839228 AGGAATGAGTACAGAAGGGCT 58.161 47.619 0.00 0.00 0.00 5.19
2023 2081 4.260784 GGCTAATTCATGTTCACGGCTTAG 60.261 45.833 0.00 0.00 0.00 2.18
2027 2085 3.678056 TCATGTTCACGGCTTAGAGTT 57.322 42.857 0.00 0.00 0.00 3.01
2028 2086 3.585862 TCATGTTCACGGCTTAGAGTTC 58.414 45.455 0.00 0.00 0.00 3.01
2029 2087 3.006430 TCATGTTCACGGCTTAGAGTTCA 59.994 43.478 0.00 0.00 0.00 3.18
2042 2100 6.036470 GCTTAGAGTTCAAACATTATTGGCC 58.964 40.000 0.00 0.00 0.00 5.36
2052 2110 5.543507 AACATTATTGGCCACTGTTCAAA 57.456 34.783 3.88 0.00 0.00 2.69
2079 2137 4.433186 TGCATTTCATAACAAAGACCCG 57.567 40.909 0.00 0.00 0.00 5.28
2085 2143 4.837093 TCATAACAAAGACCCGGAAGAT 57.163 40.909 0.73 0.00 0.00 2.40
2101 2159 6.014156 CCCGGAAGATTATCCAGAACTCTTAT 60.014 42.308 0.73 0.00 39.61 1.73
2110 2168 4.556697 TCCAGAACTCTTATCCATAGGCA 58.443 43.478 0.00 0.00 0.00 4.75
2187 2247 1.719780 GCGTTACGGTCAGACTTCAAG 59.280 52.381 6.94 0.00 0.00 3.02
2189 2249 2.030540 CGTTACGGTCAGACTTCAAGGA 60.031 50.000 0.00 0.00 0.00 3.36
2190 2250 3.576648 GTTACGGTCAGACTTCAAGGAG 58.423 50.000 0.00 0.00 0.00 3.69
2192 2252 1.614413 ACGGTCAGACTTCAAGGAGAC 59.386 52.381 0.00 0.00 0.00 3.36
2225 2285 5.867174 GGGGTATTTCGAAAAGGAAAATGTG 59.133 40.000 15.66 0.00 39.19 3.21
2245 2305 2.373169 TGTCAAATGGGAGCAGAGAAGT 59.627 45.455 0.00 0.00 0.00 3.01
2251 2311 1.372683 GGAGCAGAGAAGTGTGGCA 59.627 57.895 0.00 0.00 0.00 4.92
2274 2334 2.113860 TGGCCACACTGAGATTAAGC 57.886 50.000 0.00 0.00 0.00 3.09
2310 2370 4.829492 CCAAGAGACCTCAAGGAATGTTTT 59.171 41.667 2.30 0.00 38.94 2.43
2338 2398 2.783510 TGTTCTCTCTTCCCAAAAGGGT 59.216 45.455 0.00 0.00 35.67 4.34
2348 2408 2.110899 TCCCAAAAGGGTATGCCTTTCA 59.889 45.455 0.00 0.00 36.61 2.69
2359 2419 6.015095 AGGGTATGCCTTTCAAAAAGAAGAAG 60.015 38.462 0.00 0.00 37.57 2.85
2382 2442 1.496060 TCCGTGTATGGATGGCTCTT 58.504 50.000 0.00 0.00 31.53 2.85
2422 2482 2.430465 GAGCTGGAGTGCAAAGAATGA 58.570 47.619 0.00 0.00 34.99 2.57
2429 2489 6.183360 GCTGGAGTGCAAAGAATGAAAGATAT 60.183 38.462 0.00 0.00 0.00 1.63
2433 2493 7.040823 GGAGTGCAAAGAATGAAAGATATAGGG 60.041 40.741 0.00 0.00 0.00 3.53
2436 2496 8.686334 GTGCAAAGAATGAAAGATATAGGGAAA 58.314 33.333 0.00 0.00 0.00 3.13
2599 2662 5.240183 AGCGAATTTGATGATGGACCAATAG 59.760 40.000 0.00 0.00 0.00 1.73
2668 2731 1.134551 CAAGGGCCTCTAGAAGACTGC 60.135 57.143 6.46 0.00 0.00 4.40
2672 2735 0.811915 GCCTCTAGAAGACTGCGTCA 59.188 55.000 10.52 0.00 34.60 4.35
2732 2795 5.428131 AGATATCCTCTGGCTCAAAGAAGTT 59.572 40.000 0.00 0.00 31.12 2.66
2749 2812 4.103153 AGAAGTTGGACTTGATTCAGACCA 59.897 41.667 0.00 5.03 38.80 4.02
2750 2813 4.437682 AGTTGGACTTGATTCAGACCAA 57.562 40.909 13.40 13.40 43.55 3.67
2751 2814 4.392940 AGTTGGACTTGATTCAGACCAAG 58.607 43.478 16.07 9.24 45.44 3.61
2752 2815 4.103153 AGTTGGACTTGATTCAGACCAAGA 59.897 41.667 15.31 1.26 45.44 3.02
2753 2816 4.008074 TGGACTTGATTCAGACCAAGAC 57.992 45.455 15.31 10.50 41.56 3.01
2754 2817 3.339141 GGACTTGATTCAGACCAAGACC 58.661 50.000 15.31 14.39 43.67 3.85
2758 2821 3.703001 TGATTCAGACCAAGACCCTTC 57.297 47.619 0.00 0.00 0.00 3.46
2761 2824 3.943671 TTCAGACCAAGACCCTTCAAA 57.056 42.857 0.00 0.00 0.00 2.69
2771 2834 6.096423 ACCAAGACCCTTCAAAAACTTCTTAC 59.904 38.462 0.00 0.00 0.00 2.34
2773 2836 7.363443 CCAAGACCCTTCAAAAACTTCTTACAA 60.363 37.037 0.00 0.00 0.00 2.41
2789 2852 0.610232 ACAAGGATGAAGTGCCTGCC 60.610 55.000 0.00 0.00 34.00 4.85
2808 2871 1.215382 CGTGCTGATGGTCTCCGAA 59.785 57.895 0.00 0.00 0.00 4.30
2829 2892 2.247358 CCTCTCCTAGCAGATCTTCCC 58.753 57.143 0.00 0.00 0.00 3.97
2830 2893 1.885887 CTCTCCTAGCAGATCTTCCCG 59.114 57.143 0.00 0.00 0.00 5.14
2875 2938 4.520179 TGAGATCCATGTTGAGGACAATG 58.480 43.478 0.00 0.00 42.62 2.82
2935 2998 1.648504 TCAGCTGCAGACATTGATCG 58.351 50.000 20.43 0.00 0.00 3.69
2968 3031 2.351350 GGCAACAAGTTGTCAATACCGG 60.351 50.000 9.40 0.00 44.08 5.28
2979 3042 5.873179 TGTCAATACCGGAGAATTTCAAC 57.127 39.130 9.46 4.13 0.00 3.18
3003 3066 2.408271 TAATCAGCCTGCAGTTCCTG 57.592 50.000 13.81 15.17 34.12 3.86
3009 3072 0.823356 GCCTGCAGTTCCTGGAAACA 60.823 55.000 11.40 9.05 39.59 2.83
3069 3132 3.823304 AGTTGACTTCCCTGCAAGAAATC 59.177 43.478 1.68 1.68 34.07 2.17
3127 3190 6.096705 TGGCATTAGTCAACTGGAAAATATGG 59.903 38.462 0.00 0.00 0.00 2.74
3159 3222 5.105228 CCATGGTAATCTTTGCATCAAAGGT 60.105 40.000 16.41 8.93 45.33 3.50
3168 3231 6.748333 CTTTGCATCAAAGGTCTTGAGATA 57.252 37.500 10.54 0.00 44.75 1.98
3171 3234 6.544928 TGCATCAAAGGTCTTGAGATAGTA 57.455 37.500 0.00 0.00 0.00 1.82
3175 3238 7.201866 GCATCAAAGGTCTTGAGATAGTAGAGA 60.202 40.741 0.00 0.00 0.00 3.10
3176 3239 8.690884 CATCAAAGGTCTTGAGATAGTAGAGAA 58.309 37.037 0.00 0.00 0.00 2.87
3181 3244 7.406916 AGGTCTTGAGATAGTAGAGAACAAGA 58.593 38.462 0.00 0.00 39.46 3.02
3195 3258 5.829924 AGAGAACAAGAATGAGGCTTTGAAA 59.170 36.000 3.04 0.00 0.00 2.69
3224 3287 5.934625 AGCTATGCAAAAAGGAGTATATCGG 59.065 40.000 0.00 0.00 0.00 4.18
3238 3301 7.891183 AGGAGTATATCGGAACATTAGATCTGT 59.109 37.037 5.18 0.00 0.00 3.41
3246 3309 4.333926 GGAACATTAGATCTGTGCTGGAAC 59.666 45.833 5.18 0.00 0.00 3.62
3247 3310 4.558226 ACATTAGATCTGTGCTGGAACA 57.442 40.909 5.18 0.00 0.00 3.18
3251 3314 2.719739 AGATCTGTGCTGGAACATTGG 58.280 47.619 0.00 0.00 38.20 3.16
3268 3331 2.623418 TGGGAGCAAGGAGAGAACTA 57.377 50.000 0.00 0.00 0.00 2.24
3285 3348 4.223700 AGAACTAAGTCCATGATGACTGCA 59.776 41.667 5.51 0.00 44.68 4.41
3287 3350 2.865119 AAGTCCATGATGACTGCACA 57.135 45.000 5.51 0.00 44.68 4.57
3288 3351 2.105006 AGTCCATGATGACTGCACAC 57.895 50.000 4.06 0.00 43.80 3.82
3289 3352 1.627329 AGTCCATGATGACTGCACACT 59.373 47.619 4.06 0.00 43.80 3.55
3291 3354 3.453717 AGTCCATGATGACTGCACACTAT 59.546 43.478 4.06 0.00 43.80 2.12
3306 3369 3.616956 CACTATGAAGTGCTGGAAGGA 57.383 47.619 0.00 0.00 46.28 3.36
3438 3501 1.023513 AGCTCTCGAATTGCAGTGGC 61.024 55.000 6.70 0.00 41.68 5.01
3442 3505 1.651240 CTCGAATTGCAGTGGCTGGG 61.651 60.000 0.00 0.00 41.91 4.45
3516 3579 0.821301 AGATGAGATCTCTGCGGCGA 60.821 55.000 22.95 1.64 33.42 5.54
3521 3584 1.008424 GATCTCTGCGGCGAATCGA 60.008 57.895 12.98 0.00 0.00 3.59
3523 3586 1.448119 ATCTCTGCGGCGAATCGAGA 61.448 55.000 12.98 10.57 35.46 4.04
3629 3692 0.250467 TCCTTGCCAAGCAGAGACAC 60.250 55.000 0.00 0.00 40.61 3.67
3634 3697 1.002868 CCAAGCAGAGACACCCAGG 60.003 63.158 0.00 0.00 0.00 4.45
3637 3700 1.556911 CAAGCAGAGACACCCAGGTAT 59.443 52.381 0.00 0.00 0.00 2.73
3654 3717 1.401905 GTATTTCCCAAGCTTCGCAGG 59.598 52.381 0.00 0.00 0.00 4.85
3672 3735 3.091545 CAGGCTGTCCATAACCAATTGT 58.908 45.455 6.28 0.00 33.74 2.71
3674 3737 3.088532 GGCTGTCCATAACCAATTGTGA 58.911 45.455 4.43 0.00 0.00 3.58
3678 3741 5.446143 TGTCCATAACCAATTGTGACAAC 57.554 39.130 0.00 0.00 0.00 3.32
3686 3749 3.221771 CCAATTGTGACAACCTGAAGGA 58.778 45.455 0.00 0.00 38.94 3.36
3691 3754 0.107831 TGACAACCTGAAGGAACCCG 59.892 55.000 2.62 0.00 38.94 5.28
3695 3758 1.071699 CAACCTGAAGGAACCCGAAGA 59.928 52.381 2.62 0.00 38.94 2.87
3712 3775 7.808218 ACCCGAAGACCTTCCATATTTATTAA 58.192 34.615 4.36 0.00 36.27 1.40
3744 3807 3.228188 TCTTTGGCCATCAAGAACTGT 57.772 42.857 16.03 0.00 36.62 3.55
3755 3818 2.367241 TCAAGAACTGTCCCAACATCGA 59.633 45.455 0.00 0.00 34.13 3.59
3762 3825 4.759782 ACTGTCCCAACATCGATAAAGAG 58.240 43.478 0.00 0.00 34.13 2.85
3783 3846 5.489637 AGAGTATATCCGTCCCTCTATGACT 59.510 44.000 0.00 0.00 30.98 3.41
3785 3848 6.891388 AGTATATCCGTCCCTCTATGACTAG 58.109 44.000 0.00 0.00 0.00 2.57
3786 3849 2.953284 TCCGTCCCTCTATGACTAGG 57.047 55.000 0.00 0.00 0.00 3.02
3787 3850 1.202903 TCCGTCCCTCTATGACTAGGC 60.203 57.143 0.00 0.00 0.00 3.93
3788 3851 1.249407 CGTCCCTCTATGACTAGGCC 58.751 60.000 0.00 0.00 0.00 5.19
3789 3852 1.202952 CGTCCCTCTATGACTAGGCCT 60.203 57.143 11.78 11.78 0.00 5.19
3790 3853 2.243810 GTCCCTCTATGACTAGGCCTG 58.756 57.143 17.99 8.18 0.00 4.85
3791 3854 1.860240 TCCCTCTATGACTAGGCCTGT 59.140 52.381 17.99 11.84 0.00 4.00
3792 3855 2.158445 TCCCTCTATGACTAGGCCTGTC 60.158 54.545 17.99 20.32 35.21 3.51
3815 3923 2.079170 TGTCAAAAACCTGCATCCCA 57.921 45.000 0.00 0.00 0.00 4.37
3826 3934 1.470098 CTGCATCCCAGAAACGGAAAG 59.530 52.381 0.00 0.00 44.64 2.62
3836 3944 3.013921 AGAAACGGAAAGTTGCTGACAA 58.986 40.909 0.00 0.00 46.79 3.18
3839 3947 3.626028 ACGGAAAGTTGCTGACAAATC 57.374 42.857 0.00 0.00 37.58 2.17
3858 3966 6.127083 ACAAATCCATGGTGAAGAAACTTGTT 60.127 34.615 12.58 0.00 0.00 2.83
3871 3979 9.487790 TGAAGAAACTTGTTTTGTCTCATTTTT 57.512 25.926 0.06 0.00 0.00 1.94
3886 3994 7.721842 TGTCTCATTTTTCCTTTATGGTGTGTA 59.278 33.333 0.00 0.00 37.07 2.90
3957 4067 4.260985 TGCAGAGAAATATTCGCCAGAAA 58.739 39.130 0.00 0.00 40.15 2.52
3960 4070 5.731686 GCAGAGAAATATTCGCCAGAAAAGG 60.732 44.000 0.00 0.00 40.15 3.11
3961 4071 4.884164 AGAGAAATATTCGCCAGAAAAGGG 59.116 41.667 0.00 0.00 40.15 3.95
3970 4092 2.205022 CCAGAAAAGGGCAGATGTCA 57.795 50.000 0.00 0.00 0.00 3.58
3978 4100 2.194859 AGGGCAGATGTCAAGACAGAT 58.805 47.619 8.99 0.00 45.48 2.90
3989 4111 7.663081 AGATGTCAAGACAGATGAAAAGCTTTA 59.337 33.333 13.10 0.00 45.48 1.85
3998 4120 6.424812 ACAGATGAAAAGCTTTAAATGTTGCC 59.575 34.615 13.10 0.00 0.00 4.52
4008 4130 5.870978 GCTTTAAATGTTGCCTCATGATGTT 59.129 36.000 0.00 0.00 0.00 2.71
4021 4143 1.067295 TGATGTTGGACTGCCTTCCT 58.933 50.000 2.58 0.00 36.51 3.36
4024 4146 0.823356 TGTTGGACTGCCTTCCTTGC 60.823 55.000 2.58 0.00 36.51 4.01
4034 4156 1.755179 CCTTCCTTGCCATCGACAAT 58.245 50.000 0.00 0.00 0.00 2.71
4035 4157 1.402968 CCTTCCTTGCCATCGACAATG 59.597 52.381 0.00 0.00 34.93 2.82
4108 4230 7.807907 AGTGTATTTTTCTATTGTGCCTTTTCG 59.192 33.333 0.00 0.00 0.00 3.46
4111 4233 7.637709 ATTTTTCTATTGTGCCTTTTCGAAC 57.362 32.000 0.00 0.00 0.00 3.95
4330 4537 3.071892 TGGTTCCTGTCGAGTAAACCATT 59.928 43.478 14.36 0.00 43.23 3.16
4367 4574 6.761242 TGGTCAACATGCATAGTAGTTACATC 59.239 38.462 0.00 0.00 0.00 3.06
4468 4681 6.350445 GGTGAACTAAACCATGCTCAATGATT 60.350 38.462 0.00 0.00 38.72 2.57
4472 4685 8.757982 AACTAAACCATGCTCAATGATTCTAT 57.242 30.769 0.00 0.00 38.72 1.98
4614 4829 1.061485 GAAGACGTCCTTGTTCTCGC 58.939 55.000 13.01 0.00 34.68 5.03
4678 4893 4.453136 TCCACCTGCATAAACGAGTTTTAC 59.547 41.667 6.53 0.00 32.29 2.01
4685 4900 8.188139 CCTGCATAAACGAGTTTTACCATATTT 58.812 33.333 6.53 0.00 32.29 1.40
4693 4908 6.655848 ACGAGTTTTACCATATTTGCTGGTTA 59.344 34.615 0.00 0.00 44.67 2.85
4700 4915 4.949856 ACCATATTTGCTGGTTAGACAAGG 59.050 41.667 0.00 0.00 44.67 3.61
4709 4924 2.708861 TGGTTAGACAAGGCAGAAGGAA 59.291 45.455 0.00 0.00 0.00 3.36
4719 4934 5.163550 ACAAGGCAGAAGGAAACAACTTAAC 60.164 40.000 0.00 0.00 0.00 2.01
4782 4997 0.521291 CTTTTCCAGCATCGCGGAAA 59.479 50.000 6.13 15.87 43.44 3.13
4783 4998 1.133025 CTTTTCCAGCATCGCGGAAAT 59.867 47.619 18.63 0.00 43.98 2.17
4785 5000 0.451383 TTCCAGCATCGCGGAAATTG 59.549 50.000 6.13 0.00 37.90 2.32
4792 5007 2.354074 ATCGCGGAAATTGGGCATGC 62.354 55.000 9.90 9.90 0.00 4.06
4795 5010 2.578128 GGAAATTGGGCATGCGCA 59.422 55.556 31.24 31.24 41.24 6.09
4828 5044 1.423845 CGCACACTCATAAACGGGC 59.576 57.895 0.00 0.00 0.00 6.13
4834 5050 3.190327 CACACTCATAAACGGGCAAATCA 59.810 43.478 0.00 0.00 0.00 2.57
4880 5096 3.577805 ATACCAGCAGATTACAACCCC 57.422 47.619 0.00 0.00 0.00 4.95
4916 5132 0.826715 CCGTGGGATCACTCACTCAT 59.173 55.000 0.00 0.00 44.55 2.90
4957 5173 1.685180 CGGTCCTGTGACAGATCCCTA 60.685 57.143 15.33 0.00 43.65 3.53
4958 5174 1.757699 GGTCCTGTGACAGATCCCTAC 59.242 57.143 15.33 2.36 43.65 3.18
4964 5180 1.134670 GTGACAGATCCCTACTGGTGC 60.135 57.143 0.00 0.00 39.38 5.01
4965 5181 0.103208 GACAGATCCCTACTGGTGCG 59.897 60.000 0.00 0.00 39.38 5.34
4977 5193 0.523072 CTGGTGCGAGGTGAAATTGG 59.477 55.000 0.00 0.00 0.00 3.16
4988 5204 5.010708 AGGTGAAATTGGTGGGTAAGAAT 57.989 39.130 0.00 0.00 0.00 2.40
4989 5205 5.402630 AGGTGAAATTGGTGGGTAAGAATT 58.597 37.500 0.00 0.00 0.00 2.17
4990 5206 5.245977 AGGTGAAATTGGTGGGTAAGAATTG 59.754 40.000 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.706691 CCGTCTCACAATATAACAATATAAGGT 57.293 33.333 0.00 0.00 0.00 3.50
20 21 9.923143 TCCGTCTCACAATATAACAATATAAGG 57.077 33.333 0.00 0.00 0.00 2.69
22 23 9.923143 CCTCCGTCTCACAATATAACAATATAA 57.077 33.333 0.00 0.00 0.00 0.98
23 24 8.528643 CCCTCCGTCTCACAATATAACAATATA 58.471 37.037 0.00 0.00 0.00 0.86
24 25 7.234782 TCCCTCCGTCTCACAATATAACAATAT 59.765 37.037 0.00 0.00 0.00 1.28
25 26 6.551975 TCCCTCCGTCTCACAATATAACAATA 59.448 38.462 0.00 0.00 0.00 1.90
26 27 5.365605 TCCCTCCGTCTCACAATATAACAAT 59.634 40.000 0.00 0.00 0.00 2.71
27 28 4.712829 TCCCTCCGTCTCACAATATAACAA 59.287 41.667 0.00 0.00 0.00 2.83
28 29 4.283337 TCCCTCCGTCTCACAATATAACA 58.717 43.478 0.00 0.00 0.00 2.41
29 30 4.341520 ACTCCCTCCGTCTCACAATATAAC 59.658 45.833 0.00 0.00 0.00 1.89
30 31 4.543689 ACTCCCTCCGTCTCACAATATAA 58.456 43.478 0.00 0.00 0.00 0.98
31 32 4.180377 ACTCCCTCCGTCTCACAATATA 57.820 45.455 0.00 0.00 0.00 0.86
32 33 3.033659 ACTCCCTCCGTCTCACAATAT 57.966 47.619 0.00 0.00 0.00 1.28
33 34 2.526888 ACTCCCTCCGTCTCACAATA 57.473 50.000 0.00 0.00 0.00 1.90
34 35 2.496470 GTTACTCCCTCCGTCTCACAAT 59.504 50.000 0.00 0.00 0.00 2.71
35 36 1.891150 GTTACTCCCTCCGTCTCACAA 59.109 52.381 0.00 0.00 0.00 3.33
36 37 1.075050 AGTTACTCCCTCCGTCTCACA 59.925 52.381 0.00 0.00 0.00 3.58
37 38 1.473278 CAGTTACTCCCTCCGTCTCAC 59.527 57.143 0.00 0.00 0.00 3.51
38 39 1.075050 ACAGTTACTCCCTCCGTCTCA 59.925 52.381 0.00 0.00 0.00 3.27
39 40 1.836802 ACAGTTACTCCCTCCGTCTC 58.163 55.000 0.00 0.00 0.00 3.36
40 41 2.305858 AACAGTTACTCCCTCCGTCT 57.694 50.000 0.00 0.00 0.00 4.18
41 42 3.087781 ACTAACAGTTACTCCCTCCGTC 58.912 50.000 0.00 0.00 0.00 4.79
42 43 3.166560 ACTAACAGTTACTCCCTCCGT 57.833 47.619 0.00 0.00 0.00 4.69
43 44 4.012374 TGTACTAACAGTTACTCCCTCCG 58.988 47.826 0.00 0.00 0.00 4.63
44 45 5.624052 GCTTGTACTAACAGTTACTCCCTCC 60.624 48.000 0.00 0.00 36.83 4.30
45 46 5.409211 GCTTGTACTAACAGTTACTCCCTC 58.591 45.833 0.00 0.00 36.83 4.30
46 47 4.222366 GGCTTGTACTAACAGTTACTCCCT 59.778 45.833 0.00 0.00 36.83 4.20
47 48 4.020839 TGGCTTGTACTAACAGTTACTCCC 60.021 45.833 0.00 0.00 36.83 4.30
48 49 5.143376 TGGCTTGTACTAACAGTTACTCC 57.857 43.478 0.00 0.00 36.83 3.85
49 50 6.872020 TCATTGGCTTGTACTAACAGTTACTC 59.128 38.462 0.00 0.00 36.83 2.59
50 51 6.765403 TCATTGGCTTGTACTAACAGTTACT 58.235 36.000 0.00 0.00 36.83 2.24
51 52 7.611213 ATCATTGGCTTGTACTAACAGTTAC 57.389 36.000 0.00 0.00 36.83 2.50
52 53 7.880713 TGAATCATTGGCTTGTACTAACAGTTA 59.119 33.333 0.00 0.00 36.83 2.24
53 54 6.714810 TGAATCATTGGCTTGTACTAACAGTT 59.285 34.615 0.00 0.00 36.83 3.16
54 55 6.237901 TGAATCATTGGCTTGTACTAACAGT 58.762 36.000 0.00 0.00 36.83 3.55
55 56 6.595326 TCTGAATCATTGGCTTGTACTAACAG 59.405 38.462 0.00 0.00 36.83 3.16
56 57 6.371548 GTCTGAATCATTGGCTTGTACTAACA 59.628 38.462 0.00 0.00 0.00 2.41
57 58 6.595716 AGTCTGAATCATTGGCTTGTACTAAC 59.404 38.462 0.00 0.00 0.00 2.34
58 59 6.711277 AGTCTGAATCATTGGCTTGTACTAA 58.289 36.000 0.00 0.00 0.00 2.24
59 60 6.070824 TGAGTCTGAATCATTGGCTTGTACTA 60.071 38.462 3.33 0.00 0.00 1.82
60 61 5.171339 AGTCTGAATCATTGGCTTGTACT 57.829 39.130 0.00 0.00 0.00 2.73
61 62 4.937620 TGAGTCTGAATCATTGGCTTGTAC 59.062 41.667 3.33 0.00 0.00 2.90
62 63 5.164620 TGAGTCTGAATCATTGGCTTGTA 57.835 39.130 3.33 0.00 0.00 2.41
63 64 4.008330 CTGAGTCTGAATCATTGGCTTGT 58.992 43.478 8.37 0.00 0.00 3.16
64 65 3.181499 GCTGAGTCTGAATCATTGGCTTG 60.181 47.826 8.37 0.00 0.00 4.01
65 66 3.015327 GCTGAGTCTGAATCATTGGCTT 58.985 45.455 8.37 0.00 0.00 4.35
66 67 2.641305 GCTGAGTCTGAATCATTGGCT 58.359 47.619 8.37 0.00 0.00 4.75
67 68 1.674962 GGCTGAGTCTGAATCATTGGC 59.325 52.381 8.37 8.56 0.00 4.52
68 69 2.943690 CAGGCTGAGTCTGAATCATTGG 59.056 50.000 8.71 0.00 37.47 3.16
69 70 2.355132 GCAGGCTGAGTCTGAATCATTG 59.645 50.000 19.71 8.69 37.47 2.82
70 71 2.641305 GCAGGCTGAGTCTGAATCATT 58.359 47.619 19.71 0.00 37.47 2.57
71 72 1.134159 GGCAGGCTGAGTCTGAATCAT 60.134 52.381 19.71 0.00 37.47 2.45
72 73 0.251354 GGCAGGCTGAGTCTGAATCA 59.749 55.000 19.71 7.64 37.47 2.57
73 74 0.251354 TGGCAGGCTGAGTCTGAATC 59.749 55.000 19.71 6.89 37.47 2.52
74 75 0.035630 GTGGCAGGCTGAGTCTGAAT 60.036 55.000 19.71 0.00 37.47 2.57
75 76 1.123861 AGTGGCAGGCTGAGTCTGAA 61.124 55.000 19.71 1.54 37.47 3.02
76 77 0.251787 TAGTGGCAGGCTGAGTCTGA 60.252 55.000 19.71 0.00 37.47 3.27
77 78 0.610174 TTAGTGGCAGGCTGAGTCTG 59.390 55.000 20.86 10.22 38.44 3.51
78 79 0.610687 GTTAGTGGCAGGCTGAGTCT 59.389 55.000 20.86 13.97 0.00 3.24
79 80 0.321671 TGTTAGTGGCAGGCTGAGTC 59.678 55.000 20.86 7.33 0.00 3.36
80 81 0.987294 ATGTTAGTGGCAGGCTGAGT 59.013 50.000 20.86 3.49 0.00 3.41
81 82 2.831333 CTATGTTAGTGGCAGGCTGAG 58.169 52.381 20.86 0.00 0.00 3.35
82 83 1.134401 GCTATGTTAGTGGCAGGCTGA 60.134 52.381 20.86 0.00 0.00 4.26
85 86 1.972872 ATGCTATGTTAGTGGCAGGC 58.027 50.000 0.00 0.00 39.01 4.85
125 126 9.875708 AGTTCAGATCATCTTACCTCTAGTATT 57.124 33.333 0.00 0.00 0.00 1.89
127 128 8.719596 AGAGTTCAGATCATCTTACCTCTAGTA 58.280 37.037 0.00 0.00 0.00 1.82
129 130 9.567776 TTAGAGTTCAGATCATCTTACCTCTAG 57.432 37.037 3.98 0.00 0.00 2.43
130 131 9.922477 TTTAGAGTTCAGATCATCTTACCTCTA 57.078 33.333 0.13 0.13 0.00 2.43
131 132 8.830915 TTTAGAGTTCAGATCATCTTACCTCT 57.169 34.615 1.87 1.87 0.00 3.69
132 133 8.691797 ACTTTAGAGTTCAGATCATCTTACCTC 58.308 37.037 0.00 0.00 29.87 3.85
133 134 8.602472 ACTTTAGAGTTCAGATCATCTTACCT 57.398 34.615 0.00 0.00 29.87 3.08
134 135 7.646130 CGACTTTAGAGTTCAGATCATCTTACC 59.354 40.741 0.00 0.00 35.88 2.85
135 136 7.166804 GCGACTTTAGAGTTCAGATCATCTTAC 59.833 40.741 0.00 0.00 35.88 2.34
136 137 7.197017 GCGACTTTAGAGTTCAGATCATCTTA 58.803 38.462 0.00 0.00 35.88 2.10
137 138 6.039616 GCGACTTTAGAGTTCAGATCATCTT 58.960 40.000 0.00 0.00 35.88 2.40
138 139 5.451242 GGCGACTTTAGAGTTCAGATCATCT 60.451 44.000 0.00 0.00 35.88 2.90
154 155 1.145803 GTTGTTAGAGCGGCGACTTT 58.854 50.000 12.98 5.29 0.00 2.66
175 176 2.029380 ACACCGTTCTGAATGACGATGA 60.029 45.455 11.11 0.00 0.00 2.92
179 180 4.718858 TTTTACACCGTTCTGAATGACG 57.281 40.909 11.11 2.36 0.00 4.35
181 182 4.759693 AGCATTTTACACCGTTCTGAATGA 59.240 37.500 11.11 0.00 0.00 2.57
183 184 4.156008 GGAGCATTTTACACCGTTCTGAAT 59.844 41.667 0.00 0.00 0.00 2.57
187 188 3.134574 TGGAGCATTTTACACCGTTCT 57.865 42.857 0.00 0.00 0.00 3.01
190 191 3.066291 TCATGGAGCATTTTACACCGT 57.934 42.857 0.00 0.00 0.00 4.83
250 251 2.203408 TGGTTTGGTGGCGCATGA 60.203 55.556 10.83 0.00 0.00 3.07
252 253 1.470996 AATGTGGTTTGGTGGCGCAT 61.471 50.000 10.83 0.00 0.00 4.73
255 256 0.602562 ATCAATGTGGTTTGGTGGCG 59.397 50.000 0.00 0.00 0.00 5.69
257 258 4.272991 CACAAAATCAATGTGGTTTGGTGG 59.727 41.667 11.98 0.00 44.64 4.61
258 259 5.406767 CACAAAATCAATGTGGTTTGGTG 57.593 39.130 7.02 7.02 43.50 4.17
259 260 5.350504 TCACAAAATCAATGTGGTTTGGT 57.649 34.783 6.80 0.76 46.37 3.67
260 261 5.990386 TCATCACAAAATCAATGTGGTTTGG 59.010 36.000 6.80 0.24 46.37 3.28
261 262 6.479331 TGTCATCACAAAATCAATGTGGTTTG 59.521 34.615 6.80 0.00 46.37 2.93
264 265 5.531634 GTGTCATCACAAAATCAATGTGGT 58.468 37.500 6.80 0.00 46.37 4.16
278 279 1.780860 GCGCTTGTTTTGTGTCATCAC 59.219 47.619 0.00 0.00 44.08 3.06
279 280 1.675483 AGCGCTTGTTTTGTGTCATCA 59.325 42.857 2.64 0.00 0.00 3.07
280 281 2.046313 CAGCGCTTGTTTTGTGTCATC 58.954 47.619 7.50 0.00 0.00 2.92
281 282 1.675483 TCAGCGCTTGTTTTGTGTCAT 59.325 42.857 7.50 0.00 0.00 3.06
282 283 1.090728 TCAGCGCTTGTTTTGTGTCA 58.909 45.000 7.50 0.00 0.00 3.58
283 284 2.310577 GATCAGCGCTTGTTTTGTGTC 58.689 47.619 7.50 0.00 0.00 3.67
298 299 6.481313 TCATGAGAAATTAAGCGAAGGATCAG 59.519 38.462 0.00 0.00 0.00 2.90
308 309 8.186821 AGCAACTATTGTCATGAGAAATTAAGC 58.813 33.333 9.61 11.04 0.00 3.09
328 329 2.103771 TCTCTGTTCAGAAGCAGCAACT 59.896 45.455 4.09 0.00 33.09 3.16
333 334 3.383620 ACAGTCTCTGTTCAGAAGCAG 57.616 47.619 4.09 6.46 42.59 4.24
349 350 3.747708 GCCCTTCCAGTTAGTTCAACAGT 60.748 47.826 0.00 0.00 39.81 3.55
375 376 3.054655 GTCCTATGTGGGCTGAAAGGTTA 60.055 47.826 0.00 0.00 37.49 2.85
386 387 2.743183 GCTTGTAGCTGTCCTATGTGGG 60.743 54.545 0.00 0.00 38.45 4.61
388 389 3.251479 TGCTTGTAGCTGTCCTATGTG 57.749 47.619 0.00 0.00 42.97 3.21
392 393 2.897326 TCAGTTGCTTGTAGCTGTCCTA 59.103 45.455 0.00 0.00 42.97 2.94
398 399 3.134458 GTGAAGTCAGTTGCTTGTAGCT 58.866 45.455 0.00 0.00 42.97 3.32
400 401 3.466836 TGGTGAAGTCAGTTGCTTGTAG 58.533 45.455 0.00 0.00 0.00 2.74
401 402 3.133901 TCTGGTGAAGTCAGTTGCTTGTA 59.866 43.478 0.00 0.00 34.15 2.41
403 404 2.564771 TCTGGTGAAGTCAGTTGCTTG 58.435 47.619 0.00 0.00 34.15 4.01
406 407 3.051081 AGATCTGGTGAAGTCAGTTGC 57.949 47.619 0.00 0.00 34.15 4.17
407 408 9.636879 CATATATAGATCTGGTGAAGTCAGTTG 57.363 37.037 5.18 0.00 34.15 3.16
466 494 9.950496 GAGGATGAACTGGTATTTCATATATGT 57.050 33.333 12.42 0.00 42.53 2.29
467 495 9.948964 TGAGGATGAACTGGTATTTCATATATG 57.051 33.333 6.36 6.36 42.53 1.78
470 498 9.125026 GTTTGAGGATGAACTGGTATTTCATAT 57.875 33.333 0.00 0.00 42.53 1.78
479 507 4.392940 CTTGAGTTTGAGGATGAACTGGT 58.607 43.478 0.00 0.00 36.31 4.00
548 576 6.849697 TGGGTGGTTCAGATATCCTAAACTAT 59.150 38.462 0.00 0.00 0.00 2.12
556 584 3.199946 TCAACTGGGTGGTTCAGATATCC 59.800 47.826 0.00 0.00 36.22 2.59
557 585 4.080863 AGTCAACTGGGTGGTTCAGATATC 60.081 45.833 0.00 0.00 36.22 1.63
597 625 1.567649 ACCATGATCCTTGATGTGCCT 59.432 47.619 0.00 0.00 0.00 4.75
598 626 2.062971 ACCATGATCCTTGATGTGCC 57.937 50.000 0.00 0.00 0.00 5.01
599 627 4.202050 GGTTAACCATGATCCTTGATGTGC 60.202 45.833 20.12 0.00 35.64 4.57
600 628 4.339247 GGGTTAACCATGATCCTTGATGTG 59.661 45.833 25.71 0.00 39.85 3.21
601 629 4.017591 TGGGTTAACCATGATCCTTGATGT 60.018 41.667 25.71 0.00 46.80 3.06
602 630 4.535781 TGGGTTAACCATGATCCTTGATG 58.464 43.478 25.71 0.00 46.80 3.07
603 631 4.879295 TGGGTTAACCATGATCCTTGAT 57.121 40.909 25.71 0.00 46.80 2.57
615 643 3.018149 TGCCGTTCATATTGGGTTAACC 58.982 45.455 16.85 16.85 40.81 2.85
616 644 3.488553 GCTGCCGTTCATATTGGGTTAAC 60.489 47.826 0.00 0.00 0.00 2.01
617 645 2.685897 GCTGCCGTTCATATTGGGTTAA 59.314 45.455 0.00 0.00 0.00 2.01
618 646 2.294074 GCTGCCGTTCATATTGGGTTA 58.706 47.619 0.00 0.00 0.00 2.85
619 647 1.102978 GCTGCCGTTCATATTGGGTT 58.897 50.000 0.00 0.00 0.00 4.11
620 648 0.034574 TGCTGCCGTTCATATTGGGT 60.035 50.000 0.00 0.00 0.00 4.51
621 649 0.381801 GTGCTGCCGTTCATATTGGG 59.618 55.000 0.00 0.00 0.00 4.12
622 650 1.064505 CTGTGCTGCCGTTCATATTGG 59.935 52.381 0.00 0.00 0.00 3.16
623 651 2.009051 TCTGTGCTGCCGTTCATATTG 58.991 47.619 0.00 0.00 0.00 1.90
624 652 2.401583 TCTGTGCTGCCGTTCATATT 57.598 45.000 0.00 0.00 0.00 1.28
657 685 5.647589 TGTGTAGAAGATACAATGTCCGAC 58.352 41.667 0.00 0.00 0.00 4.79
658 686 5.907866 TGTGTAGAAGATACAATGTCCGA 57.092 39.130 0.00 0.00 0.00 4.55
659 687 5.463392 CCATGTGTAGAAGATACAATGTCCG 59.537 44.000 0.00 0.00 32.29 4.79
667 695 4.654262 TCTTCCCCCATGTGTAGAAGATAC 59.346 45.833 9.42 0.00 38.36 2.24
676 704 1.075536 GAACCTTCTTCCCCCATGTGT 59.924 52.381 0.00 0.00 0.00 3.72
704 732 2.592102 ACACAGGAATTCAGTGCCAT 57.408 45.000 22.68 7.70 36.76 4.40
710 738 6.587608 GGCAAAAGAATAACACAGGAATTCAG 59.412 38.462 7.93 1.58 33.06 3.02
713 741 5.543790 AGGGCAAAAGAATAACACAGGAATT 59.456 36.000 0.00 0.00 0.00 2.17
729 763 5.313280 TCAAGTTAGTTAGGAGGGCAAAA 57.687 39.130 0.00 0.00 0.00 2.44
733 767 4.876679 GTCAATCAAGTTAGTTAGGAGGGC 59.123 45.833 0.00 0.00 0.00 5.19
763 797 0.835941 GGTGGGTCTGAGCTGATGAT 59.164 55.000 6.83 0.00 0.00 2.45
850 884 4.882671 TCTCAATTCTTTAATGCGGCTC 57.117 40.909 0.00 0.00 0.00 4.70
853 887 7.967854 TGTGTTTATCTCAATTCTTTAATGCGG 59.032 33.333 0.00 0.00 0.00 5.69
875 910 4.876107 GTGTATGCTTAACTGGCTATGTGT 59.124 41.667 0.00 0.00 0.00 3.72
877 912 4.080582 TGGTGTATGCTTAACTGGCTATGT 60.081 41.667 0.00 0.00 0.00 2.29
909 944 3.076621 CTCAGTTGGCAGCTTATGTTGA 58.923 45.455 0.00 0.00 0.00 3.18
932 967 1.518367 AAACCTTCCAGGACTCCACA 58.482 50.000 0.00 0.00 37.67 4.17
936 971 5.104318 AGGATGATTAAACCTTCCAGGACTC 60.104 44.000 12.53 0.00 37.67 3.36
939 974 5.039645 AGAGGATGATTAAACCTTCCAGGA 58.960 41.667 12.53 0.00 37.67 3.86
950 985 3.716872 GGGTCCAGGAAGAGGATGATTAA 59.283 47.826 0.00 0.00 37.52 1.40
952 987 2.131023 GGGTCCAGGAAGAGGATGATT 58.869 52.381 0.00 0.00 37.52 2.57
956 991 1.004891 GGGGGTCCAGGAAGAGGAT 59.995 63.158 0.00 0.00 37.52 3.24
966 1001 1.003442 CTGGATCTCAGGGGGTCCA 59.997 63.158 0.37 0.37 39.76 4.02
1012 1048 2.964310 ATCCAGCCACAGCGAGCTT 61.964 57.895 0.00 0.00 46.67 3.74
1078 1114 2.355310 CCTTGTACCGGTCCTTTGCATA 60.355 50.000 12.40 0.00 0.00 3.14
1098 1134 2.742589 GGTCACGAAATTCTTCTGGTCC 59.257 50.000 0.00 0.00 0.00 4.46
1117 1153 1.676006 CTTGAGCTTTTCGGTGTTGGT 59.324 47.619 0.00 0.00 0.00 3.67
1128 1164 1.529244 AAGGCGCCACTTGAGCTTT 60.529 52.632 31.54 7.70 0.00 3.51
1143 1179 3.079578 TGCTTCTGAAATCTGCTCAAGG 58.920 45.455 0.00 0.00 0.00 3.61
1146 1182 4.329392 TGATTGCTTCTGAAATCTGCTCA 58.671 39.130 0.00 0.00 38.69 4.26
1178 1214 3.701542 GGAATCATCAACTTCCCTTTCCC 59.298 47.826 0.00 0.00 35.83 3.97
1209 1245 2.092158 TCTGAGTCTCTGGATCCACGAT 60.092 50.000 11.44 0.00 0.00 3.73
1301 1337 8.218338 AGGAGAAAATATATGCTTGTGTTCAG 57.782 34.615 0.00 0.00 0.00 3.02
1302 1338 9.330063 CTAGGAGAAAATATATGCTTGTGTTCA 57.670 33.333 0.00 0.00 0.00 3.18
1305 1341 9.905713 TTTCTAGGAGAAAATATATGCTTGTGT 57.094 29.630 0.00 0.00 40.89 3.72
1329 1371 6.351626 GGGAAATGGAATCAGAAGCATCTTTT 60.352 38.462 0.00 0.00 32.03 2.27
1346 1388 4.685628 CGTCATTTTTGTCTTGGGAAATGG 59.314 41.667 7.54 0.00 39.03 3.16
1351 1393 2.293122 CAGCGTCATTTTTGTCTTGGGA 59.707 45.455 0.00 0.00 0.00 4.37
1361 1419 6.176975 TCGTCAAATTATCAGCGTCATTTT 57.823 33.333 0.00 0.00 0.00 1.82
1365 1423 4.688879 ACTTTCGTCAAATTATCAGCGTCA 59.311 37.500 0.00 0.00 0.00 4.35
1383 1441 7.220108 ACGTTGTCAAGCTTTTTAATGACTTTC 59.780 33.333 13.56 5.16 42.03 2.62
1392 1450 4.796312 GCAGAAACGTTGTCAAGCTTTTTA 59.204 37.500 0.00 0.00 0.00 1.52
1406 1464 0.888619 TCTCATCTCCGCAGAAACGT 59.111 50.000 0.00 0.00 30.24 3.99
1407 1465 1.923204 CTTCTCATCTCCGCAGAAACG 59.077 52.381 0.00 0.00 30.24 3.60
1408 1466 1.663135 GCTTCTCATCTCCGCAGAAAC 59.337 52.381 0.00 0.00 30.24 2.78
1416 1474 2.777832 ACCACAAGCTTCTCATCTCC 57.222 50.000 0.00 0.00 0.00 3.71
1425 1483 0.381801 CACGCAAGAACCACAAGCTT 59.618 50.000 0.00 0.00 43.62 3.74
1441 1499 0.673333 TGTGTAGCATCTTGCCCACG 60.673 55.000 12.39 0.00 46.52 4.94
1488 1546 4.767255 GCAGTGGTCTCCCGCCAG 62.767 72.222 0.00 0.00 42.59 4.85
1496 1554 1.293498 GTGTCGGATGCAGTGGTCT 59.707 57.895 0.00 0.00 0.00 3.85
1506 1564 0.951558 GCTTTGGTTGTGTGTCGGAT 59.048 50.000 0.00 0.00 0.00 4.18
1524 1582 1.856265 CTTTCTGCCGACCAACCAGC 61.856 60.000 0.00 0.00 0.00 4.85
1549 1607 9.775854 CTCAAGTAATAAGGTCATGAGATCATT 57.224 33.333 0.00 0.00 35.91 2.57
1554 1612 6.798427 AGCTCAAGTAATAAGGTCATGAGA 57.202 37.500 0.00 0.00 35.91 3.27
1561 1619 7.448469 ACATTGTTCAAGCTCAAGTAATAAGGT 59.552 33.333 0.00 0.00 0.00 3.50
1566 1624 7.665559 TCCTTACATTGTTCAAGCTCAAGTAAT 59.334 33.333 0.00 0.00 0.00 1.89
1572 1630 5.227569 TCTCCTTACATTGTTCAAGCTCA 57.772 39.130 0.00 0.00 0.00 4.26
1573 1631 6.560253 TTTCTCCTTACATTGTTCAAGCTC 57.440 37.500 0.00 0.00 0.00 4.09
1575 1633 7.597386 AGATTTTCTCCTTACATTGTTCAAGC 58.403 34.615 0.00 0.00 0.00 4.01
1577 1635 8.567948 GTGAGATTTTCTCCTTACATTGTTCAA 58.432 33.333 0.00 0.00 42.73 2.69
1590 1648 8.734386 ACAACAGAAATATGTGAGATTTTCTCC 58.266 33.333 2.26 0.00 42.73 3.71
1597 1655 5.977635 TCCGACAACAGAAATATGTGAGAT 58.022 37.500 0.00 0.00 32.52 2.75
1604 1662 4.640201 CACCCATTCCGACAACAGAAATAT 59.360 41.667 0.00 0.00 0.00 1.28
1665 1723 4.756642 CCAAAGCAGTCTGTTCTGTTATCA 59.243 41.667 0.93 0.00 37.70 2.15
1670 1728 1.477558 CCCCAAAGCAGTCTGTTCTGT 60.478 52.381 0.93 0.00 37.70 3.41
1689 1747 0.393537 CACAGATCCAGGCCTTCACC 60.394 60.000 0.00 0.00 0.00 4.02
1887 1945 3.684788 ACGCATCCAGTATGTTTCTTGAC 59.315 43.478 0.00 0.00 37.93 3.18
1905 1963 3.243367 GGCTAAATGGCATATTGAACGCA 60.243 43.478 0.00 0.00 41.37 5.24
1926 1984 2.163818 TACTTCCTTCACGTGCTTGG 57.836 50.000 11.67 12.42 0.00 3.61
1971 2029 4.953940 ACTCATTCCTTCTCCTATGCTC 57.046 45.455 0.00 0.00 0.00 4.26
1997 2055 3.016736 CCGTGAACATGAATTAGCCCTT 58.983 45.455 0.00 0.00 0.00 3.95
2003 2061 5.730550 ACTCTAAGCCGTGAACATGAATTA 58.269 37.500 0.00 0.00 0.00 1.40
2023 2081 5.163513 CAGTGGCCAATAATGTTTGAACTC 58.836 41.667 7.24 0.00 0.00 3.01
2027 2085 4.586421 TGAACAGTGGCCAATAATGTTTGA 59.414 37.500 21.15 12.41 34.41 2.69
2028 2086 4.880759 TGAACAGTGGCCAATAATGTTTG 58.119 39.130 21.15 5.77 34.41 2.93
2029 2087 5.543507 TTGAACAGTGGCCAATAATGTTT 57.456 34.783 21.15 10.29 34.41 2.83
2042 2100 5.806502 TGAAATGCAAGTTCTTTGAACAGTG 59.193 36.000 12.16 10.23 42.30 3.66
2052 2110 7.147976 GGTCTTTGTTATGAAATGCAAGTTCT 58.852 34.615 13.02 3.93 42.30 3.01
2079 2137 7.967908 TGGATAAGAGTTCTGGATAATCTTCC 58.032 38.462 0.00 0.00 36.24 3.46
2085 2143 6.787458 TGCCTATGGATAAGAGTTCTGGATAA 59.213 38.462 0.00 0.00 0.00 1.75
2101 2159 3.974719 TGGCTATGTTTTTGCCTATGGA 58.025 40.909 0.00 0.00 46.23 3.41
2122 2180 2.768253 GGCAAGCCATTTAGCCTTTT 57.232 45.000 6.14 0.00 43.70 2.27
2142 2200 0.250901 AAAATGTCTCCGCTGCCTGT 60.251 50.000 0.00 0.00 0.00 4.00
2187 2247 2.689034 CCCCTCCAGTGGGTCTCC 60.689 72.222 9.92 0.00 45.70 3.71
2225 2285 2.746362 CACTTCTCTGCTCCCATTTGAC 59.254 50.000 0.00 0.00 0.00 3.18
2251 2311 4.458397 CTTAATCTCAGTGTGGCCATGAT 58.542 43.478 9.72 3.67 0.00 2.45
2274 2334 0.809385 CTCTTGGCAGCTGTTCATGG 59.191 55.000 16.64 10.04 0.00 3.66
2310 2370 4.771114 TGGGAAGAGAGAACAAGAAACA 57.229 40.909 0.00 0.00 0.00 2.83
2348 2408 7.881232 TCCATACACGGATAACTTCTTCTTTTT 59.119 33.333 0.00 0.00 0.00 1.94
2359 2419 3.006967 AGAGCCATCCATACACGGATAAC 59.993 47.826 0.00 0.00 44.28 1.89
2382 2442 1.706866 CCAGGGCCATCAAGATATCCA 59.293 52.381 6.18 0.00 0.00 3.41
2429 2489 8.789762 GCAACTGAGTAAAAATACTTTTCCCTA 58.210 33.333 0.00 0.00 36.20 3.53
2433 2493 9.730420 TTCAGCAACTGAGTAAAAATACTTTTC 57.270 29.630 0.00 0.00 41.75 2.29
2436 2496 8.677148 TCTTCAGCAACTGAGTAAAAATACTT 57.323 30.769 0.00 0.00 41.75 2.24
2478 2538 4.046286 TGTTCCTGGTGCCTCATTATTT 57.954 40.909 0.00 0.00 0.00 1.40
2481 2541 3.521531 TGTATGTTCCTGGTGCCTCATTA 59.478 43.478 0.00 0.00 0.00 1.90
2617 2680 6.265196 TCATTGATATCAAGGTAAACATGGCC 59.735 38.462 24.85 0.00 39.47 5.36
2619 2682 9.293404 AGATCATTGATATCAAGGTAAACATGG 57.707 33.333 24.85 5.85 39.47 3.66
2668 2731 4.032900 ACTGCGCAGATTAGTAATTTGACG 59.967 41.667 42.03 16.87 0.00 4.35
2672 2735 5.643777 ACAAGACTGCGCAGATTAGTAATTT 59.356 36.000 42.03 17.10 0.00 1.82
2725 2788 5.066593 GGTCTGAATCAAGTCCAACTTCTT 58.933 41.667 0.00 0.00 36.03 2.52
2732 2795 3.244561 GGTCTTGGTCTGAATCAAGTCCA 60.245 47.826 21.35 5.50 43.56 4.02
2749 2812 7.147897 CCTTGTAAGAAGTTTTTGAAGGGTCTT 60.148 37.037 9.36 0.00 0.00 3.01
2750 2813 6.321435 CCTTGTAAGAAGTTTTTGAAGGGTCT 59.679 38.462 9.36 0.00 0.00 3.85
2751 2814 6.320418 TCCTTGTAAGAAGTTTTTGAAGGGTC 59.680 38.462 14.11 0.00 31.43 4.46
2752 2815 6.192044 TCCTTGTAAGAAGTTTTTGAAGGGT 58.808 36.000 14.11 0.00 31.43 4.34
2753 2816 6.709018 TCCTTGTAAGAAGTTTTTGAAGGG 57.291 37.500 14.11 3.32 31.43 3.95
2754 2817 7.940850 TCATCCTTGTAAGAAGTTTTTGAAGG 58.059 34.615 10.37 10.37 0.00 3.46
2758 2821 7.168135 GCACTTCATCCTTGTAAGAAGTTTTTG 59.832 37.037 4.11 0.00 46.02 2.44
2761 2824 5.241728 GGCACTTCATCCTTGTAAGAAGTTT 59.758 40.000 4.11 0.00 46.02 2.66
2771 2834 1.318158 GGGCAGGCACTTCATCCTTG 61.318 60.000 0.00 0.00 34.60 3.61
2773 2836 2.679716 GGGCAGGCACTTCATCCT 59.320 61.111 0.00 0.00 34.60 3.24
2789 2852 2.202797 CGGAGACCATCAGCACGG 60.203 66.667 0.00 0.00 0.00 4.94
2808 2871 2.425683 GGGAAGATCTGCTAGGAGAGGT 60.426 54.545 19.37 3.47 0.00 3.85
2829 2892 0.600255 AACGGAGGTGCTTCAGTTCG 60.600 55.000 0.00 0.00 31.27 3.95
2830 2893 2.067013 GTAACGGAGGTGCTTCAGTTC 58.933 52.381 3.53 0.00 36.91 3.01
2875 2938 2.611292 CTGGAAGAGACGCATTTCCATC 59.389 50.000 10.48 0.00 46.64 3.51
2935 2998 0.459489 TTGTTGCCACAGAACCTTGC 59.541 50.000 0.00 0.00 33.22 4.01
2955 3018 5.873179 TGAAATTCTCCGGTATTGACAAC 57.127 39.130 0.00 0.00 0.00 3.32
2964 3027 6.435904 TGATTAATTGGTTGAAATTCTCCGGT 59.564 34.615 0.00 0.00 32.16 5.28
2968 3031 7.490402 CAGGCTGATTAATTGGTTGAAATTCTC 59.510 37.037 9.42 0.00 32.16 2.87
2979 3042 3.181483 GGAACTGCAGGCTGATTAATTGG 60.181 47.826 20.86 0.68 0.00 3.16
3003 3066 0.875059 CTGCTTCCGGTTCTGTTTCC 59.125 55.000 0.00 0.00 0.00 3.13
3009 3072 0.613260 TGCATACTGCTTCCGGTTCT 59.387 50.000 0.00 0.00 45.31 3.01
3127 3190 3.933861 AAGATTACCATGGACCTGGTC 57.066 47.619 21.47 18.65 46.79 4.02
3159 3222 9.467796 TCATTCTTGTTCTCTACTATCTCAAGA 57.532 33.333 0.00 0.00 38.23 3.02
3168 3231 5.753721 AAGCCTCATTCTTGTTCTCTACT 57.246 39.130 0.00 0.00 0.00 2.57
3171 3234 4.978099 TCAAAGCCTCATTCTTGTTCTCT 58.022 39.130 0.00 0.00 0.00 3.10
3195 3258 3.575687 ACTCCTTTTTGCATAGCTTTGCT 59.424 39.130 26.18 3.64 43.18 3.91
3205 3268 5.492895 TGTTCCGATATACTCCTTTTTGCA 58.507 37.500 0.00 0.00 0.00 4.08
3224 3287 4.937620 TGTTCCAGCACAGATCTAATGTTC 59.062 41.667 0.00 0.00 0.00 3.18
3238 3301 0.178967 TTGCTCCCAATGTTCCAGCA 60.179 50.000 0.00 0.00 38.32 4.41
3246 3309 2.026449 AGTTCTCTCCTTGCTCCCAATG 60.026 50.000 0.00 0.00 0.00 2.82
3247 3310 2.273619 AGTTCTCTCCTTGCTCCCAAT 58.726 47.619 0.00 0.00 0.00 3.16
3251 3314 3.118920 GGACTTAGTTCTCTCCTTGCTCC 60.119 52.174 0.00 0.00 0.00 4.70
3268 3331 2.039480 AGTGTGCAGTCATCATGGACTT 59.961 45.455 2.21 0.00 45.59 3.01
3285 3348 8.690883 GAAGTCCTTCCAGCACTTCATAGTGT 62.691 46.154 3.16 0.00 43.72 3.55
3287 3350 3.177228 AGTCCTTCCAGCACTTCATAGT 58.823 45.455 0.00 0.00 34.00 2.12
3288 3351 3.902881 AGTCCTTCCAGCACTTCATAG 57.097 47.619 0.00 0.00 0.00 2.23
3289 3352 4.207891 GAAGTCCTTCCAGCACTTCATA 57.792 45.455 3.16 0.00 43.72 2.15
3291 3354 2.550830 GAAGTCCTTCCAGCACTTCA 57.449 50.000 3.16 0.00 43.72 3.02
3306 3369 2.522185 AGATTGCAATGTGGCTGAAGT 58.478 42.857 18.59 0.00 34.04 3.01
3360 3423 0.758685 TCAGCCAGTTTGGGGGTTTG 60.759 55.000 0.00 0.00 38.19 2.93
3361 3424 0.031616 TTCAGCCAGTTTGGGGGTTT 60.032 50.000 0.00 0.00 38.19 3.27
3426 3489 1.318158 CCTCCCAGCCACTGCAATTC 61.318 60.000 0.00 0.00 41.13 2.17
3438 3501 3.404773 GGTGGAAGGTCCTCCCAG 58.595 66.667 0.00 0.00 42.82 4.45
3516 3579 6.611613 TGGCCATATATCTCTTTCTCGATT 57.388 37.500 0.00 0.00 0.00 3.34
3521 3584 6.753913 TGTCTTGGCCATATATCTCTTTCT 57.246 37.500 6.09 0.00 0.00 2.52
3523 3586 6.479884 GGATGTCTTGGCCATATATCTCTTT 58.520 40.000 6.09 0.00 0.00 2.52
3611 3674 1.239968 GGTGTCTCTGCTTGGCAAGG 61.240 60.000 27.25 12.75 38.41 3.61
3618 3681 1.958288 ATACCTGGGTGTCTCTGCTT 58.042 50.000 2.07 0.00 0.00 3.91
3620 3683 2.633488 GAAATACCTGGGTGTCTCTGC 58.367 52.381 2.07 0.00 0.00 4.26
3629 3692 2.379005 GAAGCTTGGGAAATACCTGGG 58.621 52.381 2.10 0.00 38.98 4.45
3654 3717 3.505680 TGTCACAATTGGTTATGGACAGC 59.494 43.478 10.83 0.00 30.99 4.40
3672 3735 0.107831 CGGGTTCCTTCAGGTTGTCA 59.892 55.000 0.00 0.00 36.34 3.58
3674 3737 0.841289 TTCGGGTTCCTTCAGGTTGT 59.159 50.000 0.00 0.00 36.34 3.32
3678 3741 0.036294 GGTCTTCGGGTTCCTTCAGG 60.036 60.000 0.00 0.00 0.00 3.86
3686 3749 4.586306 AAATATGGAAGGTCTTCGGGTT 57.414 40.909 4.84 0.00 40.37 4.11
3712 3775 5.248934 TGATGGCCAAAGATTCCAATTTCTT 59.751 36.000 10.96 0.00 33.69 2.52
3717 3780 4.355549 TCTTGATGGCCAAAGATTCCAAT 58.644 39.130 10.96 0.00 33.76 3.16
3721 3784 4.219288 ACAGTTCTTGATGGCCAAAGATTC 59.781 41.667 18.44 14.54 33.76 2.52
3722 3785 4.154942 ACAGTTCTTGATGGCCAAAGATT 58.845 39.130 18.44 9.10 33.76 2.40
3727 3790 1.909700 GGACAGTTCTTGATGGCCAA 58.090 50.000 10.96 0.00 44.69 4.52
3731 3794 2.862541 TGTTGGGACAGTTCTTGATGG 58.137 47.619 0.00 0.00 42.39 3.51
3744 3807 7.362660 CGGATATACTCTTTATCGATGTTGGGA 60.363 40.741 8.54 0.00 0.00 4.37
3755 3818 8.558312 TCATAGAGGGACGGATATACTCTTTAT 58.442 37.037 0.00 0.00 39.15 1.40
3762 3825 6.056884 CCTAGTCATAGAGGGACGGATATAC 58.943 48.000 0.00 0.00 40.20 1.47
3783 3846 5.007682 GGTTTTTGACAATAGACAGGCCTA 58.992 41.667 3.98 0.00 0.00 3.93
3785 3848 3.826729 AGGTTTTTGACAATAGACAGGCC 59.173 43.478 0.00 0.00 0.00 5.19
3786 3849 4.798574 CAGGTTTTTGACAATAGACAGGC 58.201 43.478 0.00 0.00 0.00 4.85
3787 3850 4.278170 TGCAGGTTTTTGACAATAGACAGG 59.722 41.667 0.00 0.00 0.00 4.00
3788 3851 5.437289 TGCAGGTTTTTGACAATAGACAG 57.563 39.130 0.00 0.00 0.00 3.51
3789 3852 5.048083 GGATGCAGGTTTTTGACAATAGACA 60.048 40.000 0.00 0.00 0.00 3.41
3790 3853 5.402398 GGATGCAGGTTTTTGACAATAGAC 58.598 41.667 0.00 0.00 0.00 2.59
3791 3854 4.462483 GGGATGCAGGTTTTTGACAATAGA 59.538 41.667 0.00 0.00 0.00 1.98
3792 3855 4.220382 TGGGATGCAGGTTTTTGACAATAG 59.780 41.667 0.00 0.00 0.00 1.73
3815 3923 2.639065 TGTCAGCAACTTTCCGTTTCT 58.361 42.857 0.00 0.00 32.27 2.52
3826 3934 2.557924 TCACCATGGATTTGTCAGCAAC 59.442 45.455 21.47 0.00 33.82 4.17
3834 3942 5.846203 ACAAGTTTCTTCACCATGGATTTG 58.154 37.500 21.47 6.62 0.00 2.32
3836 3944 6.484364 AAACAAGTTTCTTCACCATGGATT 57.516 33.333 21.47 0.00 0.00 3.01
3839 3947 5.418676 ACAAAACAAGTTTCTTCACCATGG 58.581 37.500 11.19 11.19 31.45 3.66
3858 3966 7.925483 CACACCATAAAGGAAAAATGAGACAAA 59.075 33.333 0.00 0.00 41.22 2.83
3893 4001 7.537596 TGTCAGGAACAAAACATGGAAATAT 57.462 32.000 0.00 0.00 34.03 1.28
3894 4002 6.968263 TGTCAGGAACAAAACATGGAAATA 57.032 33.333 0.00 0.00 34.03 1.40
3895 4003 5.867903 TGTCAGGAACAAAACATGGAAAT 57.132 34.783 0.00 0.00 34.03 2.17
3957 4067 1.980765 TCTGTCTTGACATCTGCCCTT 59.019 47.619 3.79 0.00 0.00 3.95
3960 4070 3.257469 TCATCTGTCTTGACATCTGCC 57.743 47.619 3.79 0.00 0.00 4.85
3961 4071 5.618056 TTTTCATCTGTCTTGACATCTGC 57.382 39.130 3.79 0.00 0.00 4.26
3967 4089 8.909671 CATTTAAAGCTTTTCATCTGTCTTGAC 58.090 33.333 18.47 0.00 0.00 3.18
3970 4092 9.252962 CAACATTTAAAGCTTTTCATCTGTCTT 57.747 29.630 18.47 0.00 0.00 3.01
3978 4100 5.911752 TGAGGCAACATTTAAAGCTTTTCA 58.088 33.333 18.47 7.86 41.41 2.69
3989 4111 3.833650 TCCAACATCATGAGGCAACATTT 59.166 39.130 7.40 0.00 41.41 2.32
3998 4120 2.414994 AGGCAGTCCAACATCATGAG 57.585 50.000 0.09 0.00 33.74 2.90
4008 4130 2.436109 GGCAAGGAAGGCAGTCCA 59.564 61.111 9.61 0.00 40.48 4.02
4034 4156 5.114764 TGTATTCCAATGATGCTCTTCCA 57.885 39.130 0.00 0.00 0.00 3.53
4035 4157 5.182760 GGATGTATTCCAATGATGCTCTTCC 59.817 44.000 0.00 0.00 44.74 3.46
4108 4230 5.526111 TGTAGAGCAAACAAGTACTTGGTTC 59.474 40.000 31.34 24.58 46.56 3.62
4111 4233 5.057149 ACTGTAGAGCAAACAAGTACTTGG 58.943 41.667 33.11 19.78 44.45 3.61
4169 4375 9.613428 CATAATGGTTATGATATAACATCCGGT 57.387 33.333 0.00 0.00 44.52 5.28
4170 4376 9.613428 ACATAATGGTTATGATATAACATCCGG 57.387 33.333 14.66 0.00 44.52 5.14
4203 4410 5.067273 TGTCTGTTAAATGAAACGTGGGAT 58.933 37.500 0.00 0.00 31.76 3.85
4330 4537 7.878547 TGCATGTTGACCATAATCAATAAGA 57.121 32.000 0.00 0.00 40.60 2.10
4367 4574 2.235650 TGATCTTCCTCACTTGCCTGAG 59.764 50.000 0.00 0.00 37.94 3.35
4468 4681 5.221382 GGAACTGCCGTCACCTTATTATAGA 60.221 44.000 0.00 0.00 0.00 1.98
4472 4685 2.835764 AGGAACTGCCGTCACCTTATTA 59.164 45.455 2.15 0.00 43.43 0.98
4568 4781 6.493802 CCCTGTCTACTATGGCACTTCTATAA 59.506 42.308 0.00 0.00 0.00 0.98
4614 4829 1.349282 GCCGCCGTACATTTTACCG 59.651 57.895 0.00 0.00 0.00 4.02
4678 4893 4.202050 GCCTTGTCTAACCAGCAAATATGG 60.202 45.833 0.00 0.00 43.87 2.74
4685 4900 1.055849 TCTGCCTTGTCTAACCAGCA 58.944 50.000 0.00 0.00 0.00 4.41
4693 4908 2.952310 GTTGTTTCCTTCTGCCTTGTCT 59.048 45.455 0.00 0.00 0.00 3.41
4700 4915 4.034742 TCACGTTAAGTTGTTTCCTTCTGC 59.965 41.667 0.00 0.00 0.00 4.26
4709 4924 4.688511 TTTGCACTCACGTTAAGTTGTT 57.311 36.364 0.00 0.00 0.00 2.83
4719 4934 4.214980 AGATCTTTGTTTTGCACTCACG 57.785 40.909 0.00 0.00 0.00 4.35
4764 4979 1.173043 ATTTCCGCGATGCTGGAAAA 58.827 45.000 22.00 12.05 45.70 2.29
4765 4980 1.135431 CAATTTCCGCGATGCTGGAAA 60.135 47.619 21.09 21.09 46.16 3.13
4766 4981 0.451383 CAATTTCCGCGATGCTGGAA 59.549 50.000 8.23 0.00 38.59 3.53
4774 4989 3.062500 GCATGCCCAATTTCCGCGA 62.063 57.895 8.23 0.00 0.00 5.87
4775 4990 2.583045 GCATGCCCAATTTCCGCG 60.583 61.111 6.36 0.00 0.00 6.46
4778 4993 1.519898 CTGCGCATGCCCAATTTCC 60.520 57.895 12.24 0.00 41.78 3.13
4782 4997 3.454573 CACCTGCGCATGCCCAAT 61.455 61.111 12.24 0.00 41.78 3.16
4807 5022 1.058748 CGTTTATGAGTGTGCGCCG 59.941 57.895 4.18 0.00 0.00 6.46
4808 5023 1.423845 CCGTTTATGAGTGTGCGCC 59.576 57.895 4.18 0.00 0.00 6.53
4812 5027 3.190327 TGATTTGCCCGTTTATGAGTGTG 59.810 43.478 0.00 0.00 0.00 3.82
4813 5028 3.417101 TGATTTGCCCGTTTATGAGTGT 58.583 40.909 0.00 0.00 0.00 3.55
4916 5132 7.309621 GGACCGCATAATTTACTCCACTCTATA 60.310 40.741 0.00 0.00 0.00 1.31
4957 5173 1.238439 CAATTTCACCTCGCACCAGT 58.762 50.000 0.00 0.00 0.00 4.00
4958 5174 0.523072 CCAATTTCACCTCGCACCAG 59.477 55.000 0.00 0.00 0.00 4.00
4964 5180 2.483014 TACCCACCAATTTCACCTCG 57.517 50.000 0.00 0.00 0.00 4.63
4965 5181 4.028993 TCTTACCCACCAATTTCACCTC 57.971 45.455 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.