Multiple sequence alignment - TraesCS4A01G194100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G194100 chr4A 100.000 6166 0 0 1 6166 475920117 475913952 0.000000e+00 11387.0
1 TraesCS4A01G194100 chr4B 92.801 3334 148 38 2886 6166 142915640 142918934 0.000000e+00 4743.0
2 TraesCS4A01G194100 chr4B 89.887 1414 91 32 131 1515 142912931 142914321 0.000000e+00 1772.0
3 TraesCS4A01G194100 chr4B 93.693 983 59 3 1587 2568 142914515 142915495 0.000000e+00 1469.0
4 TraesCS4A01G194100 chr4B 98.630 146 2 0 2647 2792 142915496 142915641 6.130000e-65 259.0
5 TraesCS4A01G194100 chr4B 92.143 140 10 1 1954 2092 535246100 535246239 4.880000e-46 196.0
6 TraesCS4A01G194100 chr4B 90.476 147 12 2 1954 2098 148644550 148644404 6.310000e-45 193.0
7 TraesCS4A01G194100 chr4B 86.228 167 20 1 1 167 142912751 142912914 1.770000e-40 178.0
8 TraesCS4A01G194100 chr4B 98.864 88 1 0 2568 2655 373351663 373351576 2.300000e-34 158.0
9 TraesCS4A01G194100 chr4D 90.824 1395 84 31 143 1515 100561268 100562640 0.000000e+00 1827.0
10 TraesCS4A01G194100 chr4D 90.459 1394 73 20 4806 6166 100565985 100567351 0.000000e+00 1783.0
11 TraesCS4A01G194100 chr4D 90.494 1357 66 20 2879 4197 100563978 100565309 0.000000e+00 1733.0
12 TraesCS4A01G194100 chr4D 92.705 1083 54 11 1501 2568 100562659 100563731 0.000000e+00 1539.0
13 TraesCS4A01G194100 chr4D 93.164 629 33 4 4179 4807 100565321 100565939 0.000000e+00 915.0
14 TraesCS4A01G194100 chr4D 92.949 156 8 2 2640 2792 100563831 100563986 2.240000e-54 224.0
15 TraesCS4A01G194100 chr4D 87.640 89 9 2 2668 2755 499301476 499301563 1.090000e-17 102.0
16 TraesCS4A01G194100 chr4D 90.141 71 7 0 2497 2567 39400875 39400945 6.580000e-15 93.5
17 TraesCS4A01G194100 chr6D 96.774 124 4 0 1954 2077 267532934 267532811 2.250000e-49 207.0
18 TraesCS4A01G194100 chr6D 94.898 98 4 1 2558 2655 468901951 468902047 1.070000e-32 152.0
19 TraesCS4A01G194100 chr6D 93.151 73 3 2 2684 2754 20790399 20790327 8.450000e-19 106.0
20 TraesCS4A01G194100 chr6A 96.774 124 4 0 1954 2077 381088827 381088704 2.250000e-49 207.0
21 TraesCS4A01G194100 chr6A 89.404 151 12 3 1957 2104 100319299 100319150 2.930000e-43 187.0
22 TraesCS4A01G194100 chr2A 92.701 137 10 0 1954 2090 5637493 5637357 1.360000e-46 198.0
23 TraesCS4A01G194100 chr5A 82.589 224 36 3 2347 2567 311987087 311986864 1.750000e-45 195.0
24 TraesCS4A01G194100 chr5A 95.000 40 2 0 2527 2566 112090586 112090625 5.160000e-06 63.9
25 TraesCS4A01G194100 chr5B 90.476 147 12 2 1954 2098 381856626 381856480 6.310000e-45 193.0
26 TraesCS4A01G194100 chr5B 92.920 113 7 1 2791 2902 300925589 300925477 4.950000e-36 163.0
27 TraesCS4A01G194100 chr5B 89.286 112 10 1 2458 2567 118626392 118626503 8.330000e-29 139.0
28 TraesCS4A01G194100 chr2D 82.488 217 29 5 2348 2555 361393344 361393560 1.370000e-41 182.0
29 TraesCS4A01G194100 chr2D 94.521 73 3 1 2685 2756 530392082 530392154 1.820000e-20 111.0
30 TraesCS4A01G194100 chr7B 97.059 102 3 0 2791 2892 747370632 747370733 8.220000e-39 172.0
31 TraesCS4A01G194100 chr7B 93.805 113 6 1 2791 2902 641705369 641705257 1.060000e-37 169.0
32 TraesCS4A01G194100 chr7B 89.247 93 8 2 2660 2751 505470164 505470255 1.400000e-21 115.0
33 TraesCS4A01G194100 chr7D 97.938 97 2 0 2791 2887 80971099 80971195 1.060000e-37 169.0
34 TraesCS4A01G194100 chr7D 80.556 108 14 6 2395 2496 620129647 620129541 6.630000e-10 76.8
35 TraesCS4A01G194100 chr3B 93.103 116 7 1 2784 2898 551006722 551006607 1.060000e-37 169.0
36 TraesCS4A01G194100 chr3B 91.525 118 8 2 2771 2888 490924540 490924655 1.780000e-35 161.0
37 TraesCS4A01G194100 chr3B 89.600 125 11 2 2783 2906 672773036 672773159 2.300000e-34 158.0
38 TraesCS4A01G194100 chr5D 82.888 187 28 3 2384 2567 242008082 242007897 1.380000e-36 165.0
39 TraesCS4A01G194100 chr5D 94.059 101 6 0 2551 2651 17391254 17391154 2.980000e-33 154.0
40 TraesCS4A01G194100 chr1D 92.174 115 8 1 2791 2905 284238327 284238214 1.780000e-35 161.0
41 TraesCS4A01G194100 chr1D 81.132 212 30 7 493 700 415192022 415191817 1.780000e-35 161.0
42 TraesCS4A01G194100 chr1A 96.875 96 3 0 2568 2663 133496469 133496564 1.780000e-35 161.0
43 TraesCS4A01G194100 chr1A 98.864 88 1 0 2568 2655 272648109 272648022 2.300000e-34 158.0
44 TraesCS4A01G194100 chrUn 98.864 88 1 0 2568 2655 325927187 325927274 2.300000e-34 158.0
45 TraesCS4A01G194100 chrUn 86.620 142 14 4 2511 2648 230602028 230602168 1.070000e-32 152.0
46 TraesCS4A01G194100 chrUn 81.667 120 11 10 2650 2760 154620068 154619951 8.510000e-14 89.8
47 TraesCS4A01G194100 chr7A 90.833 120 7 4 2772 2890 692780448 692780332 2.300000e-34 158.0
48 TraesCS4A01G194100 chr7A 87.000 100 12 1 2647 2745 532476371 532476470 1.820000e-20 111.0
49 TraesCS4A01G194100 chr3D 95.000 100 3 2 2551 2649 331018060 331017962 8.280000e-34 156.0
50 TraesCS4A01G194100 chr3A 95.789 95 4 0 2568 2662 391475393 391475487 2.980000e-33 154.0
51 TraesCS4A01G194100 chr3A 84.615 117 13 5 2645 2756 57018344 57018228 1.820000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G194100 chr4A 475913952 475920117 6165 True 11387.000000 11387 100.000000 1 6166 1 chr4A.!!$R1 6165
1 TraesCS4A01G194100 chr4B 142912751 142918934 6183 False 1684.200000 4743 92.247800 1 6166 5 chr4B.!!$F2 6165
2 TraesCS4A01G194100 chr4D 100561268 100567351 6083 False 1336.833333 1827 91.765833 143 6166 6 chr4D.!!$F3 6023

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 92 0.108963 TCGCTAGTAGGAGAGGAGGC 59.891 60.000 0.00 0.00 0.00 4.70 F
92 93 0.179015 CGCTAGTAGGAGAGGAGGCA 60.179 60.000 0.00 0.00 0.00 4.75 F
1911 2123 0.322546 AAAGGCTGAATGGTCGTCCC 60.323 55.000 0.00 0.00 0.00 4.46 F
2804 3051 0.757512 GGAATTACTCCCTCCGTCCC 59.242 60.000 0.00 0.00 38.44 4.46 F
4050 4321 1.369692 CGGGTGACAAGCACTACCA 59.630 57.895 0.00 0.00 46.86 3.25 F
4654 4977 2.031120 AGAGTGCTCTATCCTGCAGAC 58.969 52.381 17.39 2.11 40.06 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 2057 0.618981 AGCTGGCCCCTTGTAGTTAC 59.381 55.000 0.00 0.00 0.00 2.50 R
1961 2173 3.041211 ACATGGATAGCTAGCTTCCACA 58.959 45.455 32.71 23.33 42.09 4.17 R
3220 3472 1.376812 CGGCCACCCCAGTAGAAAC 60.377 63.158 2.24 0.00 0.00 2.78 R
4654 4977 0.250901 AACAGGTGCAGCAGGTTAGG 60.251 55.000 19.63 0.88 0.00 2.69 R
4874 5247 0.107459 GAACCCATGCCAGGAGAGAC 60.107 60.000 0.00 0.00 0.00 3.36 R
5761 6165 0.874390 ATGCTGCTGTTAACCGTGTG 59.126 50.000 2.48 0.00 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 1.335496 GCAACCTCGCTAGTAGGAGAG 59.665 57.143 17.28 7.14 37.57 3.20
91 92 0.108963 TCGCTAGTAGGAGAGGAGGC 59.891 60.000 0.00 0.00 0.00 4.70
92 93 0.179015 CGCTAGTAGGAGAGGAGGCA 60.179 60.000 0.00 0.00 0.00 4.75
96 97 0.926720 AGTAGGAGAGGAGGCAGGGA 60.927 60.000 0.00 0.00 0.00 4.20
99 100 2.146061 GGAGAGGAGGCAGGGATGG 61.146 68.421 0.00 0.00 0.00 3.51
104 105 4.554036 GAGGCAGGGATGGACGGC 62.554 72.222 0.00 0.00 0.00 5.68
108 109 2.280389 CAGGGATGGACGGCATCG 60.280 66.667 0.00 0.00 43.02 3.84
109 110 4.241555 AGGGATGGACGGCATCGC 62.242 66.667 8.92 8.92 40.79 4.58
148 149 2.355837 CGTGGCGATATGGGACGG 60.356 66.667 0.00 0.00 0.00 4.79
149 150 2.819550 GTGGCGATATGGGACGGT 59.180 61.111 0.00 0.00 0.00 4.83
191 243 1.300388 GTGCGAGGGTGTACAACGT 60.300 57.895 5.66 5.66 0.00 3.99
196 248 2.409975 CGAGGGTGTACAACGTGAAAT 58.590 47.619 11.51 0.00 0.00 2.17
205 257 4.804665 TGTACAACGTGAAATTTCAGACGA 59.195 37.500 27.86 10.65 37.98 4.20
208 260 4.203828 CAACGTGAAATTTCAGACGACTG 58.796 43.478 27.86 21.26 44.66 3.51
217 269 4.057428 AGACGACTGCCCGCTCAC 62.057 66.667 0.00 0.00 0.00 3.51
224 276 1.377725 CTGCCCGCTCACCATCTTT 60.378 57.895 0.00 0.00 0.00 2.52
257 309 1.497286 GGGGCAAGGGGTGATTATACA 59.503 52.381 0.00 0.00 0.00 2.29
258 310 2.110011 GGGGCAAGGGGTGATTATACAT 59.890 50.000 0.00 0.00 0.00 2.29
294 346 6.436843 AAATATTCGGGTTTACAAGAGCTG 57.563 37.500 0.00 0.00 0.00 4.24
324 376 5.965922 GGCTATTTTTGCCTCAACTTATGT 58.034 37.500 0.00 0.00 46.38 2.29
325 377 7.095695 GGCTATTTTTGCCTCAACTTATGTA 57.904 36.000 0.00 0.00 46.38 2.29
391 444 8.865090 TGCTCTAATTTGGGAATAGAAAAACAA 58.135 29.630 0.00 0.00 0.00 2.83
409 472 9.952341 GAAAAACAAAATAGGCGAATATTCAAC 57.048 29.630 15.57 7.19 0.00 3.18
438 501 0.324368 AGACTCATCTGCACCCCGTA 60.324 55.000 0.00 0.00 32.29 4.02
441 504 1.349688 ACTCATCTGCACCCCGTAAAA 59.650 47.619 0.00 0.00 0.00 1.52
442 505 2.009774 CTCATCTGCACCCCGTAAAAG 58.990 52.381 0.00 0.00 0.00 2.27
443 506 1.626321 TCATCTGCACCCCGTAAAAGA 59.374 47.619 0.00 0.00 0.00 2.52
444 507 2.009774 CATCTGCACCCCGTAAAAGAG 58.990 52.381 0.00 0.00 0.00 2.85
445 508 1.053424 TCTGCACCCCGTAAAAGAGT 58.947 50.000 0.00 0.00 0.00 3.24
448 511 3.071312 TCTGCACCCCGTAAAAGAGTAAA 59.929 43.478 0.00 0.00 0.00 2.01
450 513 4.400120 TGCACCCCGTAAAAGAGTAAATT 58.600 39.130 0.00 0.00 0.00 1.82
451 514 4.456566 TGCACCCCGTAAAAGAGTAAATTC 59.543 41.667 0.00 0.00 0.00 2.17
452 515 4.436451 GCACCCCGTAAAAGAGTAAATTCG 60.436 45.833 0.00 0.00 0.00 3.34
456 519 6.656270 ACCCCGTAAAAGAGTAAATTCGAAAT 59.344 34.615 0.00 0.00 0.00 2.17
527 592 1.268352 GTGAGGTGCGTGCCAAATTTA 59.732 47.619 0.00 0.00 0.00 1.40
528 593 1.539388 TGAGGTGCGTGCCAAATTTAG 59.461 47.619 0.00 0.00 0.00 1.85
546 612 9.859427 CAAATTTAGAGCATTTGGACATCTAAA 57.141 29.630 7.83 7.83 43.07 1.85
552 618 7.059156 AGAGCATTTGGACATCTAAATAGCTT 58.941 34.615 18.85 11.72 39.09 3.74
610 676 5.722021 ACAACAAACTTTTTCACAGACCT 57.278 34.783 0.00 0.00 0.00 3.85
629 697 5.243954 AGACCTCAAATTAGTCCTTTTTGCC 59.756 40.000 0.00 0.00 31.88 4.52
640 708 2.038557 TCCTTTTTGCCGAGAGCTACTT 59.961 45.455 0.00 0.00 44.23 2.24
666 734 7.663827 AGACATTCAAATGCTCTGAAATTTGA 58.336 30.769 17.58 17.58 46.06 2.69
680 748 4.518590 TGAAATTTGACACGGACATCACAT 59.481 37.500 0.00 0.00 0.00 3.21
685 753 2.823154 TGACACGGACATCACATACTCA 59.177 45.455 0.00 0.00 0.00 3.41
686 754 3.119495 TGACACGGACATCACATACTCAG 60.119 47.826 0.00 0.00 0.00 3.35
844 917 1.073923 GGAGTGTTTCCCCTGTGACAT 59.926 52.381 0.00 0.00 40.37 3.06
1177 1252 0.531974 CTCTCCTCTCTCCTCGACCG 60.532 65.000 0.00 0.00 0.00 4.79
1193 1268 2.924290 CGACCGAAGCTTTCTTTCTAGG 59.076 50.000 0.00 0.00 31.48 3.02
1194 1269 2.673862 GACCGAAGCTTTCTTTCTAGGC 59.326 50.000 0.00 0.00 31.48 3.93
1263 1341 2.807676 GACATCAAGGTGGGGTTCAAT 58.192 47.619 0.00 0.00 0.00 2.57
1485 1568 5.249852 AGTTCCAAACTATGTAAGCAGGGTA 59.750 40.000 0.00 0.00 40.69 3.69
1506 1589 4.900635 AAATTTGGCACCTCGACATATC 57.099 40.909 0.00 0.00 0.00 1.63
1522 1638 5.010112 CGACATATCCCTGTGTTATCACTCT 59.990 44.000 5.57 0.00 44.14 3.24
1523 1639 6.412362 ACATATCCCTGTGTTATCACTCTC 57.588 41.667 5.57 0.00 44.14 3.20
1541 1657 5.884792 CACTCTCTAGCATTTTCCCAGAATT 59.115 40.000 0.00 0.00 0.00 2.17
1575 1776 9.363401 AGTTCTTGTTTTATAGTTTTAAGGGCT 57.637 29.630 0.00 0.00 0.00 5.19
1582 1783 8.683615 GTTTTATAGTTTTAAGGGCTATGCAGT 58.316 33.333 0.00 0.00 0.00 4.40
1583 1784 8.817092 TTTATAGTTTTAAGGGCTATGCAGTT 57.183 30.769 0.00 0.00 0.00 3.16
1584 1785 6.944234 ATAGTTTTAAGGGCTATGCAGTTC 57.056 37.500 0.00 0.00 0.00 3.01
1590 1800 1.220749 GGCTATGCAGTTCCGACCA 59.779 57.895 0.00 0.00 0.00 4.02
1696 1908 3.067320 GCTGCATGTCCTTATTTTCCCTC 59.933 47.826 0.00 0.00 0.00 4.30
1720 1932 4.610333 TGGAGTATGTGTCACCTACTCAT 58.390 43.478 32.10 13.89 43.58 2.90
1729 1941 6.187682 TGTGTCACCTACTCATCTCTCAATA 58.812 40.000 0.00 0.00 0.00 1.90
1771 1983 6.545504 TGTTTCTTCAAATCTCTGTAGTGC 57.454 37.500 0.00 0.00 0.00 4.40
1776 1988 6.233434 TCTTCAAATCTCTGTAGTGCAATGT 58.767 36.000 0.00 0.00 0.00 2.71
1786 1998 6.230472 TCTGTAGTGCAATGTTACAAGACAT 58.770 36.000 0.00 0.00 41.83 3.06
1787 1999 6.368791 TCTGTAGTGCAATGTTACAAGACATC 59.631 38.462 0.00 0.00 39.25 3.06
1883 2095 7.126398 GCCAGCTAAAGATAATTTTCTACACG 58.874 38.462 0.00 0.00 0.00 4.49
1911 2123 0.322546 AAAGGCTGAATGGTCGTCCC 60.323 55.000 0.00 0.00 0.00 4.46
1920 2132 2.403252 ATGGTCGTCCCTTTAGCAAG 57.597 50.000 0.00 0.00 0.00 4.01
1961 2173 6.388689 TGTTCTATATTTCATACCAGGGGTGT 59.611 38.462 0.00 0.00 36.19 4.16
2240 2452 3.810386 AGTTGAGAAAACCTTTCGAGCTC 59.190 43.478 2.73 2.73 0.00 4.09
2524 2740 5.894298 AGAGTAATTGATGAGGTGGCATA 57.106 39.130 0.00 0.00 0.00 3.14
2556 2772 2.161855 GGGATGTGTGCATGTTGAGAA 58.838 47.619 0.00 0.00 35.07 2.87
2562 2778 4.862350 TGTGTGCATGTTGAGAAAGAATG 58.138 39.130 0.00 0.00 0.00 2.67
2570 2791 6.294731 GCATGTTGAGAAAGAATGTAAACCCT 60.295 38.462 0.00 0.00 0.00 4.34
2572 2793 5.768164 TGTTGAGAAAGAATGTAAACCCTCC 59.232 40.000 0.00 0.00 0.00 4.30
2575 2796 5.246656 TGAGAAAGAATGTAAACCCTCCGTA 59.753 40.000 0.00 0.00 0.00 4.02
2576 2797 6.117975 AGAAAGAATGTAAACCCTCCGTAA 57.882 37.500 0.00 0.00 0.00 3.18
2580 2801 6.610075 AGAATGTAAACCCTCCGTAAACTA 57.390 37.500 0.00 0.00 0.00 2.24
2581 2802 7.008021 AGAATGTAAACCCTCCGTAAACTAA 57.992 36.000 0.00 0.00 0.00 2.24
2590 2811 6.990798 ACCCTCCGTAAACTAATATAAGAGC 58.009 40.000 0.00 0.00 0.00 4.09
2591 2812 6.091437 CCCTCCGTAAACTAATATAAGAGCG 58.909 44.000 0.00 0.00 0.00 5.03
2684 2928 5.296151 TGTTCAGAGAAAGAATGAGTGGT 57.704 39.130 0.00 0.00 0.00 4.16
2729 2974 6.401394 CATGTTGAGAGAATTGAGTAGTGGA 58.599 40.000 0.00 0.00 0.00 4.02
2792 3039 9.330063 TCATCACTTCATCAGTTATGGAATTAC 57.670 33.333 0.00 0.00 37.61 1.89
2793 3040 9.334947 CATCACTTCATCAGTTATGGAATTACT 57.665 33.333 0.00 0.00 36.49 2.24
2794 3041 8.948631 TCACTTCATCAGTTATGGAATTACTC 57.051 34.615 0.00 0.00 33.25 2.59
2795 3042 7.987458 TCACTTCATCAGTTATGGAATTACTCC 59.013 37.037 0.00 0.00 33.25 3.85
2796 3043 7.227512 CACTTCATCAGTTATGGAATTACTCCC 59.772 40.741 0.00 0.00 33.25 4.30
2797 3044 7.127955 ACTTCATCAGTTATGGAATTACTCCCT 59.872 37.037 0.00 0.00 33.25 4.20
2798 3045 7.067496 TCATCAGTTATGGAATTACTCCCTC 57.933 40.000 0.00 0.00 44.69 4.30
2799 3046 5.888982 TCAGTTATGGAATTACTCCCTCC 57.111 43.478 0.00 0.00 44.69 4.30
2800 3047 4.344102 TCAGTTATGGAATTACTCCCTCCG 59.656 45.833 0.00 0.00 44.69 4.63
2801 3048 4.101119 CAGTTATGGAATTACTCCCTCCGT 59.899 45.833 0.00 0.00 44.69 4.69
2802 3049 4.344390 AGTTATGGAATTACTCCCTCCGTC 59.656 45.833 0.00 0.00 44.69 4.79
2803 3050 1.492764 TGGAATTACTCCCTCCGTCC 58.507 55.000 0.00 0.00 44.69 4.79
2804 3051 0.757512 GGAATTACTCCCTCCGTCCC 59.242 60.000 0.00 0.00 38.44 4.46
2805 3052 1.492764 GAATTACTCCCTCCGTCCCA 58.507 55.000 0.00 0.00 0.00 4.37
2806 3053 1.835531 GAATTACTCCCTCCGTCCCAA 59.164 52.381 0.00 0.00 0.00 4.12
2807 3054 1.961133 ATTACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2808 3055 1.732117 TTACTCCCTCCGTCCCAAAA 58.268 50.000 0.00 0.00 0.00 2.44
2809 3056 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2810 3057 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2811 3058 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2812 3059 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2813 3060 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2814 3061 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2815 3062 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2816 3063 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2817 3064 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2818 3065 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2819 3066 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2820 3067 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2821 3068 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2822 3069 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2823 3070 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2824 3071 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2825 3072 6.918022 GTCCCAAAATAAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2826 3073 6.605594 TCCCAAAATAAGTGTCTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2827 3074 7.776030 TCCCAAAATAAGTGTCTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2828 3075 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2829 3076 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2832 3079 8.535690 AATAAGTGTCTCAACTTTGTACTAGC 57.464 34.615 0.00 0.00 40.77 3.42
2833 3080 5.793030 AGTGTCTCAACTTTGTACTAGCT 57.207 39.130 0.00 0.00 0.00 3.32
2834 3081 5.774630 AGTGTCTCAACTTTGTACTAGCTC 58.225 41.667 0.00 0.00 0.00 4.09
2835 3082 5.536916 AGTGTCTCAACTTTGTACTAGCTCT 59.463 40.000 0.00 0.00 0.00 4.09
2836 3083 6.715718 AGTGTCTCAACTTTGTACTAGCTCTA 59.284 38.462 0.00 0.00 0.00 2.43
2837 3084 7.024768 GTGTCTCAACTTTGTACTAGCTCTAG 58.975 42.308 0.00 2.55 39.04 2.43
2839 3086 7.881751 TGTCTCAACTTTGTACTAGCTCTAGTA 59.118 37.037 11.59 11.59 43.98 1.82
2874 3121 8.166422 ACTAAACTTGAGACAGTTATTTTGGG 57.834 34.615 0.00 0.00 35.87 4.12
2875 3122 7.996644 ACTAAACTTGAGACAGTTATTTTGGGA 59.003 33.333 0.00 0.00 35.87 4.37
2876 3123 6.635030 AACTTGAGACAGTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2877 3124 4.755123 ACTTGAGACAGTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2878 3125 3.670625 TGAGACAGTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2879 3126 3.325425 TGAGACAGTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2880 3127 3.933332 GAGACAGTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2881 3128 3.007635 GACAGTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2882 3129 2.290705 ACAGTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2883 3130 2.026636 CAGTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2884 3131 2.238898 AGTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2885 3132 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2886 3133 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2895 3142 4.220163 GGGACGGAGGGAGTATTATACTTG 59.780 50.000 6.33 0.00 39.59 3.16
3097 3346 8.925161 TTTTTCTCGATTCTGTTTGTTTTCAT 57.075 26.923 0.00 0.00 0.00 2.57
3228 3481 4.102681 ACTGGCTGGTACTTTGTTTCTACT 59.897 41.667 0.00 0.00 0.00 2.57
3381 3634 5.551760 AAGTGATGAGCTAATTTTGGACG 57.448 39.130 0.00 0.00 0.00 4.79
3606 3859 4.925646 GCCAGAATTTTCACAGATGTTTCC 59.074 41.667 0.00 0.00 0.00 3.13
3830 4101 6.859420 TGATTTCATATTACACATGGGTCG 57.141 37.500 2.35 0.00 0.00 4.79
3991 4262 3.770046 CCAATGGCAAGGATATCCATCA 58.230 45.455 23.81 14.89 39.51 3.07
4050 4321 1.369692 CGGGTGACAAGCACTACCA 59.630 57.895 0.00 0.00 46.86 3.25
4080 4352 2.040412 GGGATGGGTATCTTCATGGGTC 59.960 54.545 0.00 0.00 33.68 4.46
4081 4353 2.040412 GGATGGGTATCTTCATGGGTCC 59.960 54.545 0.00 0.00 33.68 4.46
4082 4354 2.587060 TGGGTATCTTCATGGGTCCT 57.413 50.000 0.00 0.00 0.00 3.85
4084 4356 2.777692 TGGGTATCTTCATGGGTCCTTC 59.222 50.000 0.00 0.00 0.00 3.46
4085 4357 2.106684 GGGTATCTTCATGGGTCCTTCC 59.893 54.545 0.00 0.00 0.00 3.46
4086 4358 2.777692 GGTATCTTCATGGGTCCTTCCA 59.222 50.000 0.00 0.00 41.60 3.53
4278 4601 5.840940 GCTTATTAGCGATCGGTATTGTT 57.159 39.130 25.94 14.21 37.71 2.83
4281 4604 6.615839 GCTTATTAGCGATCGGTATTGTTCAC 60.616 42.308 25.94 10.31 37.71 3.18
4438 4761 4.041198 TGGAATGGACGGGTATTTCCTATC 59.959 45.833 0.00 0.00 36.25 2.08
4455 4778 6.360370 TCCTATCATGTGCTATTACCTTCC 57.640 41.667 0.00 0.00 0.00 3.46
4469 4792 6.699575 ATTACCTTCCCATTCTTTTCGATG 57.300 37.500 0.00 0.00 0.00 3.84
4483 4806 3.868757 TTCGATGCTGTGCTAGTTAGT 57.131 42.857 0.00 0.00 0.00 2.24
4511 4834 4.036567 TGTATATCCGTGCACACTACAC 57.963 45.455 18.64 7.52 34.62 2.90
4518 4841 2.065993 GTGCACACTACACGATGACT 57.934 50.000 13.17 0.00 0.00 3.41
4519 4842 2.404215 GTGCACACTACACGATGACTT 58.596 47.619 13.17 0.00 0.00 3.01
4654 4977 2.031120 AGAGTGCTCTATCCTGCAGAC 58.969 52.381 17.39 2.11 40.06 3.51
4680 5003 2.550855 CCTGCTGCACCTGTTCTAAGAA 60.551 50.000 0.00 0.00 0.00 2.52
4686 5009 6.127925 TGCTGCACCTGTTCTAAGAATTTATG 60.128 38.462 0.00 0.00 0.00 1.90
4710 5033 8.577048 TGTAGCAGTATTGTAGAAGTAGAACT 57.423 34.615 0.00 0.00 0.00 3.01
4737 5060 4.910304 AGTAATCCCATTATGTCTGAGGCT 59.090 41.667 0.00 0.00 0.00 4.58
4741 5064 4.556697 TCCCATTATGTCTGAGGCTTCTA 58.443 43.478 0.00 0.00 0.00 2.10
4745 5068 5.704515 CCATTATGTCTGAGGCTTCTATTGG 59.295 44.000 0.00 0.00 0.00 3.16
4794 5117 2.423538 GGCCGCTTGTCTAAACATTGAT 59.576 45.455 0.00 0.00 34.73 2.57
4845 5218 9.467258 CAATAGCCTTTTATGTTCATGTTATGG 57.533 33.333 0.00 0.00 0.00 2.74
4846 5219 8.766994 ATAGCCTTTTATGTTCATGTTATGGT 57.233 30.769 0.00 0.00 0.00 3.55
4855 5228 7.775053 ATGTTCATGTTATGGTTGGTTAGTT 57.225 32.000 0.00 0.00 0.00 2.24
4866 5239 3.440522 GGTTGGTTAGTTGCCAAGATCTC 59.559 47.826 0.00 0.00 45.50 2.75
4867 5240 3.350219 TGGTTAGTTGCCAAGATCTCC 57.650 47.619 0.00 0.00 32.29 3.71
4874 5247 2.028420 TGCCAAGATCTCCGACAATG 57.972 50.000 0.00 0.00 0.00 2.82
4883 5256 2.095461 TCTCCGACAATGTCTCTCCTG 58.905 52.381 11.92 0.00 0.00 3.86
4885 5258 0.460987 CCGACAATGTCTCTCCTGGC 60.461 60.000 11.92 0.00 0.00 4.85
4890 5263 0.549950 AATGTCTCTCCTGGCATGGG 59.450 55.000 0.00 0.00 0.00 4.00
4918 5291 7.499232 TCCTGGTTTTTCAACTTTAGAAGAGAG 59.501 37.037 0.00 0.00 32.90 3.20
4919 5292 7.499232 CCTGGTTTTTCAACTTTAGAAGAGAGA 59.501 37.037 0.00 0.00 32.90 3.10
4920 5293 8.438676 TGGTTTTTCAACTTTAGAAGAGAGAG 57.561 34.615 0.00 0.00 32.90 3.20
4921 5294 8.265055 TGGTTTTTCAACTTTAGAAGAGAGAGA 58.735 33.333 0.00 0.00 32.90 3.10
4922 5295 8.769891 GGTTTTTCAACTTTAGAAGAGAGAGAG 58.230 37.037 0.00 0.00 32.90 3.20
4923 5296 9.535878 GTTTTTCAACTTTAGAAGAGAGAGAGA 57.464 33.333 0.00 0.00 0.00 3.10
4924 5297 9.757227 TTTTTCAACTTTAGAAGAGAGAGAGAG 57.243 33.333 0.00 0.00 0.00 3.20
4925 5298 8.698973 TTTCAACTTTAGAAGAGAGAGAGAGA 57.301 34.615 0.00 0.00 0.00 3.10
4926 5299 7.921786 TCAACTTTAGAAGAGAGAGAGAGAG 57.078 40.000 0.00 0.00 0.00 3.20
4927 5300 7.685481 TCAACTTTAGAAGAGAGAGAGAGAGA 58.315 38.462 0.00 0.00 0.00 3.10
5010 5393 6.464465 GCTTATGATCCCTAGAGCTGGTTAAA 60.464 42.308 0.00 0.00 0.00 1.52
5011 5394 4.755266 TGATCCCTAGAGCTGGTTAAAC 57.245 45.455 0.00 0.00 0.00 2.01
5012 5395 3.454812 TGATCCCTAGAGCTGGTTAAACC 59.545 47.826 0.00 0.00 39.22 3.27
5017 5400 4.080299 CCCTAGAGCTGGTTAAACCTCATT 60.080 45.833 0.00 0.00 39.58 2.57
5038 5423 8.579850 TCATTTGAATTATCTGCTTACCTTGT 57.420 30.769 0.00 0.00 0.00 3.16
5066 5451 0.315251 GAGGAACAAAGCCTGCAACC 59.685 55.000 0.00 0.00 35.44 3.77
5072 5457 1.228675 AAAGCCTGCAACCCTGGAG 60.229 57.895 0.00 0.00 40.56 3.86
5096 5481 0.242017 GAGCTGTTGTCAATGTGCCC 59.758 55.000 0.00 0.00 0.00 5.36
5179 5570 3.570125 CGAGCATAGAGTGGATACCAGAA 59.430 47.826 0.00 0.00 32.34 3.02
5181 5572 3.900601 AGCATAGAGTGGATACCAGAAGG 59.099 47.826 0.00 0.00 42.21 3.46
5182 5573 3.556004 GCATAGAGTGGATACCAGAAGGC 60.556 52.174 0.00 0.00 39.06 4.35
5213 5604 6.116126 ACAGTGAAGAGCTAGTTTTCTTGTT 58.884 36.000 0.00 0.00 33.97 2.83
5252 5643 8.624028 GTTTAATTATCCGTTGAAAAGTTCACG 58.376 33.333 0.00 0.00 39.87 4.35
5257 5648 3.246699 TCCGTTGAAAAGTTCACGACATC 59.753 43.478 11.75 0.00 39.87 3.06
5289 5683 5.825593 TCTCATTTATCATACTGGGACCC 57.174 43.478 2.45 2.45 0.00 4.46
5291 5685 5.544176 TCTCATTTATCATACTGGGACCCTC 59.456 44.000 13.00 0.00 0.00 4.30
5292 5686 5.476983 TCATTTATCATACTGGGACCCTCT 58.523 41.667 13.00 0.00 0.00 3.69
5293 5687 6.630131 TCATTTATCATACTGGGACCCTCTA 58.370 40.000 13.00 0.88 0.00 2.43
5294 5688 6.497259 TCATTTATCATACTGGGACCCTCTAC 59.503 42.308 13.00 0.00 0.00 2.59
5295 5689 3.993658 ATCATACTGGGACCCTCTACA 57.006 47.619 13.00 0.00 0.00 2.74
5319 5713 1.597663 CACCGGGCGTGAAATTCTATC 59.402 52.381 6.32 0.00 46.20 2.08
5324 5718 3.247648 CGGGCGTGAAATTCTATCGAAAT 59.752 43.478 0.00 0.00 31.91 2.17
5330 5724 7.484959 GGCGTGAAATTCTATCGAAATTTTCTT 59.515 33.333 7.52 0.00 32.90 2.52
5331 5725 8.516268 GCGTGAAATTCTATCGAAATTTTCTTC 58.484 33.333 7.52 2.96 32.90 2.87
5334 5728 9.840427 TGAAATTCTATCGAAATTTTCTTCACC 57.160 29.630 7.52 0.00 32.90 4.02
5338 5732 5.880332 TCTATCGAAATTTTCTTCACCTGGG 59.120 40.000 7.50 0.00 0.00 4.45
5339 5733 3.827722 TCGAAATTTTCTTCACCTGGGT 58.172 40.909 7.50 0.00 0.00 4.51
5366 5760 1.467734 CTCCTTGAGCTGACAATGTGC 59.532 52.381 0.00 0.00 0.00 4.57
5383 5777 6.658816 ACAATGTGCAGTCTTAACATGGAATA 59.341 34.615 0.00 0.00 34.82 1.75
5444 5844 2.711885 GTGGAACAAAGTACACGTTGC 58.288 47.619 7.77 1.23 44.16 4.17
5450 5850 5.972382 GGAACAAAGTACACGTTGCAAAATA 59.028 36.000 0.00 0.00 38.59 1.40
5459 5859 9.104965 AGTACACGTTGCAAAATATATATGTGT 57.895 29.630 0.00 7.35 38.72 3.72
5460 5860 9.153952 GTACACGTTGCAAAATATATATGTGTG 57.846 33.333 15.58 8.47 36.66 3.82
5475 5875 3.971702 GTGGCCTGAGCTGGGGTT 61.972 66.667 3.32 0.00 39.73 4.11
5638 6042 3.843240 GCGCGCCAGAAGAACTCG 61.843 66.667 23.24 0.00 0.00 4.18
5722 6126 1.139989 CGTGCGTGTTCTTCATCACT 58.860 50.000 0.00 0.00 33.49 3.41
5761 6165 4.152625 GTCGCGACCTGCATGCAC 62.153 66.667 28.61 6.49 46.97 4.57
5813 6220 0.505655 GTCCAAGTCGAAACCGAACG 59.494 55.000 0.00 0.00 37.85 3.95
5856 6263 1.187087 CGAGAAGGTTCCTACAGGCT 58.813 55.000 0.00 0.00 34.44 4.58
5931 6340 2.045242 TCGTAGCTCGGCAGGTCT 60.045 61.111 0.00 0.00 40.32 3.85
5937 6346 2.997315 CTCGGCAGGTCTCCCACA 60.997 66.667 0.00 0.00 0.00 4.17
6000 6409 2.687566 TTCCCGGCTCCCTTCTCC 60.688 66.667 0.00 0.00 0.00 3.71
6024 6433 4.396790 TGCTTGTTTAGGTTCACGAACTTT 59.603 37.500 9.63 2.16 40.94 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 0.179015 TGCCTCCTCTCCTACTAGCG 60.179 60.000 0.00 0.00 0.00 4.26
77 78 0.926720 TCCCTGCCTCCTCTCCTACT 60.927 60.000 0.00 0.00 0.00 2.57
86 87 3.866582 CCGTCCATCCCTGCCTCC 61.867 72.222 0.00 0.00 0.00 4.30
91 92 2.280389 CGATGCCGTCCATCCCTG 60.280 66.667 7.48 0.00 46.17 4.45
92 93 4.241555 GCGATGCCGTCCATCCCT 62.242 66.667 7.48 0.00 46.17 4.20
127 128 2.122797 TCCCATATCGCCACGTCGT 61.123 57.895 0.00 0.00 0.00 4.34
148 149 4.722855 GCCATGTTGTGCCGCCAC 62.723 66.667 0.00 0.00 42.40 5.01
174 226 1.300311 CACGTTGTACACCCTCGCA 60.300 57.895 0.00 0.00 0.00 5.10
191 243 2.151202 GGGCAGTCGTCTGAAATTTCA 58.849 47.619 19.45 19.45 43.76 2.69
196 248 2.357034 GCGGGCAGTCGTCTGAAA 60.357 61.111 14.02 0.00 43.76 2.69
205 257 2.129555 AAAGATGGTGAGCGGGCAGT 62.130 55.000 0.00 0.00 0.00 4.40
208 260 1.803289 GAAAAGATGGTGAGCGGGC 59.197 57.895 0.00 0.00 0.00 6.13
217 269 4.093850 CCCCTTACGTTTACGAAAAGATGG 59.906 45.833 9.53 10.96 43.02 3.51
224 276 2.415776 CTTGCCCCTTACGTTTACGAA 58.584 47.619 9.53 0.00 43.02 3.85
274 326 4.546829 ACAGCTCTTGTAAACCCGAATA 57.453 40.909 0.00 0.00 38.56 1.75
275 327 3.418684 ACAGCTCTTGTAAACCCGAAT 57.581 42.857 0.00 0.00 38.56 3.34
294 346 1.725641 GGCAAAAATAGCCCTGCAAC 58.274 50.000 0.00 0.00 46.50 4.17
375 428 6.434652 TCGCCTATTTTGTTTTTCTATTCCCA 59.565 34.615 0.00 0.00 0.00 4.37
391 444 6.203723 GCTCAGAGTTGAATATTCGCCTATTT 59.796 38.462 10.80 0.00 31.69 1.40
486 550 8.450964 CCTCACACATTAAAATATCTTTCACGT 58.549 33.333 0.00 0.00 0.00 4.49
503 568 2.669569 GGCACGCACCTCACACAT 60.670 61.111 0.00 0.00 0.00 3.21
506 571 1.106351 AATTTGGCACGCACCTCACA 61.106 50.000 0.00 0.00 0.00 3.58
527 592 6.599445 AGCTATTTAGATGTCCAAATGCTCT 58.401 36.000 0.00 0.00 30.08 4.09
528 593 6.874288 AGCTATTTAGATGTCCAAATGCTC 57.126 37.500 0.00 0.00 30.08 4.26
573 639 6.896969 AGTTTGTTGTTTTGTCCAATGTTTG 58.103 32.000 0.00 0.00 0.00 2.93
574 640 7.503521 AAGTTTGTTGTTTTGTCCAATGTTT 57.496 28.000 0.00 0.00 0.00 2.83
575 641 7.503521 AAAGTTTGTTGTTTTGTCCAATGTT 57.496 28.000 0.00 0.00 0.00 2.71
576 642 7.503521 AAAAGTTTGTTGTTTTGTCCAATGT 57.496 28.000 0.00 0.00 0.00 2.71
577 643 8.072567 TGAAAAAGTTTGTTGTTTTGTCCAATG 58.927 29.630 0.00 0.00 0.00 2.82
578 644 8.073167 GTGAAAAAGTTTGTTGTTTTGTCCAAT 58.927 29.630 0.00 0.00 0.00 3.16
579 645 7.065803 TGTGAAAAAGTTTGTTGTTTTGTCCAA 59.934 29.630 0.00 0.00 0.00 3.53
580 646 6.538742 TGTGAAAAAGTTTGTTGTTTTGTCCA 59.461 30.769 0.00 0.00 0.00 4.02
581 647 6.949449 TGTGAAAAAGTTTGTTGTTTTGTCC 58.051 32.000 0.00 0.00 0.00 4.02
582 648 7.792048 GTCTGTGAAAAAGTTTGTTGTTTTGTC 59.208 33.333 0.00 0.00 0.00 3.18
583 649 7.254624 GGTCTGTGAAAAAGTTTGTTGTTTTGT 60.255 33.333 0.00 0.00 0.00 2.83
584 650 7.042119 AGGTCTGTGAAAAAGTTTGTTGTTTTG 60.042 33.333 0.00 0.00 0.00 2.44
585 651 6.989759 AGGTCTGTGAAAAAGTTTGTTGTTTT 59.010 30.769 0.00 0.00 0.00 2.43
592 658 7.832503 AATTTGAGGTCTGTGAAAAAGTTTG 57.167 32.000 0.00 0.00 0.00 2.93
610 676 5.067273 TCTCGGCAAAAAGGACTAATTTGA 58.933 37.500 12.12 0.00 36.41 2.69
629 697 6.292061 GCATTTGAATGTCTAAGTAGCTCTCG 60.292 42.308 0.00 0.00 38.65 4.04
640 708 8.795513 TCAAATTTCAGAGCATTTGAATGTCTA 58.204 29.630 13.77 0.00 43.32 2.59
666 734 2.826128 ACTGAGTATGTGATGTCCGTGT 59.174 45.455 0.00 0.00 0.00 4.49
746 816 0.613572 TCACATGAGCCGGGAGTGTA 60.614 55.000 2.18 0.00 0.00 2.90
800 873 3.859411 TGGGATGGCACGAAATTTAAC 57.141 42.857 0.00 0.00 0.00 2.01
802 875 4.382470 CCATTTGGGATGGCACGAAATTTA 60.382 41.667 0.00 0.00 40.01 1.40
1055 1128 1.076632 TCGAAGAGGGAGGAGGAGC 60.077 63.158 0.00 0.00 0.00 4.70
1177 1252 2.701107 ACCGCCTAGAAAGAAAGCTTC 58.299 47.619 0.00 0.00 31.82 3.86
1193 1268 2.124903 CGGAACACACTATGATACCGC 58.875 52.381 0.00 0.00 36.05 5.68
1194 1269 2.124903 GCGGAACACACTATGATACCG 58.875 52.381 0.00 0.00 41.13 4.02
1236 1314 0.798776 CCACCTTGATGTCGTTGCTC 59.201 55.000 0.00 0.00 0.00 4.26
1316 1394 5.453903 CCAGAACCAACCATATGTAGAGGAG 60.454 48.000 1.24 0.00 0.00 3.69
1472 1555 4.081697 GTGCCAAATTTACCCTGCTTACAT 60.082 41.667 0.00 0.00 0.00 2.29
1485 1568 3.632145 GGATATGTCGAGGTGCCAAATTT 59.368 43.478 0.00 0.00 0.00 1.82
1522 1638 6.764308 CAGAAATTCTGGGAAAATGCTAGA 57.236 37.500 14.85 0.00 40.71 2.43
1575 1776 0.981183 AAGGTGGTCGGAACTGCATA 59.019 50.000 0.00 0.00 0.00 3.14
1582 1783 1.042229 TCTCGAAAAGGTGGTCGGAA 58.958 50.000 0.00 0.00 37.84 4.30
1583 1784 1.263356 ATCTCGAAAAGGTGGTCGGA 58.737 50.000 0.00 0.00 37.84 4.55
1584 1785 2.094762 AATCTCGAAAAGGTGGTCGG 57.905 50.000 0.00 0.00 37.84 4.79
1677 1889 3.633986 CAGGAGGGAAAATAAGGACATGC 59.366 47.826 0.00 0.00 0.00 4.06
1696 1908 3.366396 AGTAGGTGACACATACTCCAGG 58.634 50.000 23.57 0.00 41.25 4.45
1720 1932 2.497675 GCACTGAGGGTGTATTGAGAGA 59.502 50.000 0.00 0.00 46.86 3.10
1729 1941 1.759445 CATAGCTAGCACTGAGGGTGT 59.241 52.381 18.83 0.00 46.86 4.16
1771 1983 4.695455 AGGGTTCGATGTCTTGTAACATTG 59.305 41.667 0.00 0.00 39.93 2.82
1776 1988 4.062293 CACAAGGGTTCGATGTCTTGTAA 58.938 43.478 19.92 0.00 45.26 2.41
1786 1998 1.540363 GCTCAGTTCACAAGGGTTCGA 60.540 52.381 0.00 0.00 0.00 3.71
1787 1999 0.868406 GCTCAGTTCACAAGGGTTCG 59.132 55.000 0.00 0.00 0.00 3.95
1838 2050 4.902448 TGGCCCCTTGTAGTTACAATTTTT 59.098 37.500 0.00 0.00 44.34 1.94
1845 2057 0.618981 AGCTGGCCCCTTGTAGTTAC 59.381 55.000 0.00 0.00 0.00 2.50
1961 2173 3.041211 ACATGGATAGCTAGCTTCCACA 58.959 45.455 32.71 23.33 42.09 4.17
2240 2452 3.064958 TCTGCTCAGATTACCGTACTTCG 59.935 47.826 0.00 0.00 34.17 3.79
2467 2681 4.644103 AACATGCATGAGAAATGCTACC 57.356 40.909 32.75 0.00 44.79 3.18
2504 2720 5.766670 CACATATGCCACCTCATCAATTACT 59.233 40.000 1.58 0.00 0.00 2.24
2524 2740 1.425066 ACACATCCCAACTCACCACAT 59.575 47.619 0.00 0.00 0.00 3.21
2556 2772 5.872963 AGTTTACGGAGGGTTTACATTCTT 58.127 37.500 0.00 0.00 0.00 2.52
2570 2791 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2620 2841 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2624 2845 9.940974 TGGTACTCCCTCTGTAAACTAATATAA 57.059 33.333 0.00 0.00 0.00 0.98
2627 2848 8.849543 AATGGTACTCCCTCTGTAAACTAATA 57.150 34.615 0.00 0.00 0.00 0.98
2630 2851 7.124750 GGTAAATGGTACTCCCTCTGTAAACTA 59.875 40.741 0.00 0.00 0.00 2.24
2633 2854 5.786457 TGGTAAATGGTACTCCCTCTGTAAA 59.214 40.000 0.00 0.00 0.00 2.01
2635 2856 4.950361 TGGTAAATGGTACTCCCTCTGTA 58.050 43.478 0.00 0.00 0.00 2.74
2636 2857 3.798515 TGGTAAATGGTACTCCCTCTGT 58.201 45.455 0.00 0.00 0.00 3.41
2638 2859 3.136626 GCATGGTAAATGGTACTCCCTCT 59.863 47.826 0.00 0.00 0.00 3.69
2684 2928 0.401356 ACACATGCCACCTCATCACA 59.599 50.000 0.00 0.00 0.00 3.58
2792 3039 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2793 3040 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2794 3041 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2795 3042 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2796 3043 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2797 3044 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2798 3045 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2799 3046 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2800 3047 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2801 3048 6.605594 ACAAAGTTGAGACACTTATTTTGGGA 59.394 34.615 0.00 0.00 35.87 4.37
2802 3049 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
2803 3050 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
2806 3053 8.989980 GCTAGTACAAAGTTGAGACACTTATTT 58.010 33.333 0.00 0.00 35.87 1.40
2807 3054 8.368668 AGCTAGTACAAAGTTGAGACACTTATT 58.631 33.333 0.00 0.00 35.87 1.40
2808 3055 7.897864 AGCTAGTACAAAGTTGAGACACTTAT 58.102 34.615 0.00 0.00 35.87 1.73
2809 3056 7.230913 AGAGCTAGTACAAAGTTGAGACACTTA 59.769 37.037 0.00 0.00 35.87 2.24
2810 3057 6.041069 AGAGCTAGTACAAAGTTGAGACACTT 59.959 38.462 0.00 0.00 38.74 3.16
2811 3058 5.536916 AGAGCTAGTACAAAGTTGAGACACT 59.463 40.000 0.00 0.00 0.00 3.55
2812 3059 5.774630 AGAGCTAGTACAAAGTTGAGACAC 58.225 41.667 0.00 0.00 0.00 3.67
2813 3060 6.715718 ACTAGAGCTAGTACAAAGTTGAGACA 59.284 38.462 8.35 0.00 43.98 3.41
2814 3061 7.148355 ACTAGAGCTAGTACAAAGTTGAGAC 57.852 40.000 8.35 0.00 43.98 3.36
2838 3085 9.309516 CTGTCTCAAGTTTAGTACAACTTTGTA 57.690 33.333 8.25 0.00 43.17 2.41
2839 3086 7.822822 ACTGTCTCAAGTTTAGTACAACTTTGT 59.177 33.333 8.25 0.00 43.17 2.83
2840 3087 8.197988 ACTGTCTCAAGTTTAGTACAACTTTG 57.802 34.615 8.25 5.77 43.17 2.77
2841 3088 8.788325 AACTGTCTCAAGTTTAGTACAACTTT 57.212 30.769 8.25 0.00 43.17 2.66
2848 3095 9.280174 CCCAAAATAACTGTCTCAAGTTTAGTA 57.720 33.333 0.00 0.00 40.77 1.82
2849 3096 7.996644 TCCCAAAATAACTGTCTCAAGTTTAGT 59.003 33.333 0.00 0.00 40.77 2.24
2850 3097 8.290325 GTCCCAAAATAACTGTCTCAAGTTTAG 58.710 37.037 0.00 0.00 40.77 1.85
2851 3098 7.041644 CGTCCCAAAATAACTGTCTCAAGTTTA 60.042 37.037 0.00 0.00 40.77 2.01
2852 3099 6.238648 CGTCCCAAAATAACTGTCTCAAGTTT 60.239 38.462 0.00 0.00 40.77 2.66
2853 3100 5.238650 CGTCCCAAAATAACTGTCTCAAGTT 59.761 40.000 0.00 0.00 42.89 2.66
2854 3101 4.755123 CGTCCCAAAATAACTGTCTCAAGT 59.245 41.667 0.00 0.00 0.00 3.16
2855 3102 4.154195 CCGTCCCAAAATAACTGTCTCAAG 59.846 45.833 0.00 0.00 0.00 3.02
2856 3103 4.069304 CCGTCCCAAAATAACTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2857 3104 3.325425 TCCGTCCCAAAATAACTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2858 3105 3.933332 CTCCGTCCCAAAATAACTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2859 3106 3.307480 CCTCCGTCCCAAAATAACTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2860 3107 3.007635 CCTCCGTCCCAAAATAACTGTC 58.992 50.000 0.00 0.00 0.00 3.51
2861 3108 2.290705 CCCTCCGTCCCAAAATAACTGT 60.291 50.000 0.00 0.00 0.00 3.55
2862 3109 2.026636 TCCCTCCGTCCCAAAATAACTG 60.027 50.000 0.00 0.00 0.00 3.16
2863 3110 2.238898 CTCCCTCCGTCCCAAAATAACT 59.761 50.000 0.00 0.00 0.00 2.24
2864 3111 2.026542 ACTCCCTCCGTCCCAAAATAAC 60.027 50.000 0.00 0.00 0.00 1.89
2865 3112 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2866 3113 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2867 3114 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2868 3115 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2869 3116 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2870 3117 2.852714 TAATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
2871 3118 3.400322 AGTATAATACTCCCTCCGTCCCA 59.600 47.826 0.00 0.00 32.47 4.37
2872 3119 4.044946 AGTATAATACTCCCTCCGTCCC 57.955 50.000 0.00 0.00 32.47 4.46
2873 3120 4.831710 ACAAGTATAATACTCCCTCCGTCC 59.168 45.833 0.00 0.00 38.26 4.79
2874 3121 5.533903 TGACAAGTATAATACTCCCTCCGTC 59.466 44.000 0.00 0.00 38.26 4.79
2875 3122 5.452255 TGACAAGTATAATACTCCCTCCGT 58.548 41.667 0.00 0.00 38.26 4.69
2876 3123 6.591750 ATGACAAGTATAATACTCCCTCCG 57.408 41.667 0.00 0.00 38.26 4.63
2895 3142 9.265901 ACTACAATGCTCTGTGATATAAATGAC 57.734 33.333 1.97 0.00 0.00 3.06
2911 3158 7.848128 AGTGGTAAGTGTATAACTACAATGCT 58.152 34.615 0.00 0.00 39.51 3.79
3072 3321 8.806634 CATGAAAACAAACAGAATCGAGAAAAA 58.193 29.630 0.00 0.00 0.00 1.94
3073 3322 7.043458 GCATGAAAACAAACAGAATCGAGAAAA 60.043 33.333 0.00 0.00 0.00 2.29
3220 3472 1.376812 CGGCCACCCCAGTAGAAAC 60.377 63.158 2.24 0.00 0.00 2.78
3228 3481 2.114411 GTTCTTTCGGCCACCCCA 59.886 61.111 2.24 0.00 0.00 4.96
3284 3537 2.033372 TGTGTCGTGACCAAGGTTCTA 58.967 47.619 0.00 0.00 0.00 2.10
3381 3634 3.705072 TGGCTTACTCTAGCTTCCTAACC 59.295 47.826 0.00 0.00 40.99 2.85
3484 3737 8.707938 TTCATCATCATCTAATAATAGTGCCG 57.292 34.615 0.00 0.00 0.00 5.69
3578 3831 5.105877 ACATCTGTGAAAATTCTGGCTCATG 60.106 40.000 0.00 0.00 0.00 3.07
3606 3859 6.401047 AGACCAGAATTGCATTATTGGATG 57.599 37.500 14.66 1.44 33.59 3.51
3822 4093 5.183904 TGTGATATATCTCTGACGACCCATG 59.816 44.000 13.79 0.00 0.00 3.66
3823 4094 5.325239 TGTGATATATCTCTGACGACCCAT 58.675 41.667 13.79 0.00 0.00 4.00
3864 4135 4.286297 ACATATTATGATGACGGGGGTG 57.714 45.455 10.62 0.00 0.00 4.61
3991 4262 4.165950 TGTTAGACAATCATGCCCATACCT 59.834 41.667 0.00 0.00 0.00 3.08
4050 4321 0.781303 ATACCCATCCCCATGCCCAT 60.781 55.000 0.00 0.00 0.00 4.00
4281 4604 3.624861 AGAACAGTTGCACACTTGAAGAG 59.375 43.478 0.00 0.00 30.92 2.85
4438 4761 5.380043 AGAATGGGAAGGTAATAGCACATG 58.620 41.667 0.00 0.00 0.00 3.21
4455 4778 2.163010 AGCACAGCATCGAAAAGAATGG 59.837 45.455 0.00 0.00 0.00 3.16
4488 4811 3.949113 TGTAGTGTGCACGGATATACAGA 59.051 43.478 13.13 0.00 36.20 3.41
4511 4834 2.155732 CGTCAGTGTCCAAAAGTCATCG 59.844 50.000 0.00 0.00 0.00 3.84
4512 4835 2.480419 CCGTCAGTGTCCAAAAGTCATC 59.520 50.000 0.00 0.00 0.00 2.92
4514 4837 1.208535 ACCGTCAGTGTCCAAAAGTCA 59.791 47.619 0.00 0.00 0.00 3.41
4515 4838 1.949465 ACCGTCAGTGTCCAAAAGTC 58.051 50.000 0.00 0.00 0.00 3.01
4516 4839 3.764237 ATACCGTCAGTGTCCAAAAGT 57.236 42.857 0.00 0.00 0.00 2.66
4517 4840 6.548441 TTTAATACCGTCAGTGTCCAAAAG 57.452 37.500 0.00 0.00 0.00 2.27
4518 4841 7.513371 AATTTAATACCGTCAGTGTCCAAAA 57.487 32.000 0.00 0.00 0.00 2.44
4519 4842 7.513371 AAATTTAATACCGTCAGTGTCCAAA 57.487 32.000 0.00 0.00 0.00 3.28
4654 4977 0.250901 AACAGGTGCAGCAGGTTAGG 60.251 55.000 19.63 0.88 0.00 2.69
4686 5009 9.934190 GTAGTTCTACTTCTACAATACTGCTAC 57.066 37.037 3.09 0.00 37.19 3.58
4696 5019 8.964772 GGGATTACTTGTAGTTCTACTTCTACA 58.035 37.037 10.65 0.00 42.80 2.74
4697 5020 8.964772 TGGGATTACTTGTAGTTCTACTTCTAC 58.035 37.037 10.65 0.00 37.58 2.59
4698 5021 9.710818 ATGGGATTACTTGTAGTTCTACTTCTA 57.289 33.333 10.65 0.00 0.00 2.10
4699 5022 8.611051 ATGGGATTACTTGTAGTTCTACTTCT 57.389 34.615 10.65 0.00 0.00 2.85
4706 5029 9.046296 CAGACATAATGGGATTACTTGTAGTTC 57.954 37.037 0.00 0.00 0.00 3.01
4710 5033 7.689313 GCCTCAGACATAATGGGATTACTTGTA 60.689 40.741 0.00 0.00 0.00 2.41
4737 5060 1.137086 GCTCGCCTGAGTCCAATAGAA 59.863 52.381 0.00 0.00 44.48 2.10
4741 5064 1.123077 TATGCTCGCCTGAGTCCAAT 58.877 50.000 0.00 0.00 44.48 3.16
4745 5068 2.739885 ATGATATGCTCGCCTGAGTC 57.260 50.000 0.00 0.00 44.48 3.36
4815 5185 8.757982 ACATGAACATAAAAGGCTATTGAGAT 57.242 30.769 0.00 0.00 0.00 2.75
4822 5192 8.465999 CAACCATAACATGAACATAAAAGGCTA 58.534 33.333 0.00 0.00 0.00 3.93
4844 5217 3.421844 AGATCTTGGCAACTAACCAACC 58.578 45.455 0.00 0.00 42.23 3.77
4845 5218 3.440522 GGAGATCTTGGCAACTAACCAAC 59.559 47.826 0.00 0.00 42.23 3.77
4846 5219 3.686016 GGAGATCTTGGCAACTAACCAA 58.314 45.455 0.00 0.00 44.86 3.67
4855 5228 1.278985 ACATTGTCGGAGATCTTGGCA 59.721 47.619 0.00 0.00 40.67 4.92
4866 5239 0.460987 GCCAGGAGAGACATTGTCGG 60.461 60.000 11.01 6.49 37.67 4.79
4867 5240 0.247460 TGCCAGGAGAGACATTGTCG 59.753 55.000 11.01 0.00 37.67 4.35
4874 5247 0.107459 GAACCCATGCCAGGAGAGAC 60.107 60.000 0.00 0.00 0.00 3.36
4883 5256 1.001974 GAAAAACCAGGAACCCATGCC 59.998 52.381 0.00 0.00 0.00 4.40
4885 5258 3.387699 AGTTGAAAAACCAGGAACCCATG 59.612 43.478 0.00 0.00 0.00 3.66
4890 5263 7.768240 TCTTCTAAAGTTGAAAAACCAGGAAC 58.232 34.615 0.00 0.00 0.00 3.62
4922 5295 9.449719 CTATAAGATAGAAGGAAGAGGTCTCTC 57.550 40.741 0.51 0.00 39.39 3.20
4923 5296 9.177927 TCTATAAGATAGAAGGAAGAGGTCTCT 57.822 37.037 0.00 0.00 42.75 3.10
4924 5297 9.802039 TTCTATAAGATAGAAGGAAGAGGTCTC 57.198 37.037 5.07 0.00 0.00 3.36
4972 5345 5.045724 GGGATCATAAGCCAGAATCTGAGAT 60.046 44.000 12.53 5.15 32.44 2.75
5010 5393 7.349598 AGGTAAGCAGATAATTCAAATGAGGT 58.650 34.615 0.00 0.00 0.00 3.85
5011 5394 7.814264 AGGTAAGCAGATAATTCAAATGAGG 57.186 36.000 0.00 0.00 0.00 3.86
5012 5395 8.680903 ACAAGGTAAGCAGATAATTCAAATGAG 58.319 33.333 0.00 0.00 0.00 2.90
5017 5400 8.020819 CGAAAACAAGGTAAGCAGATAATTCAA 58.979 33.333 0.00 0.00 0.00 2.69
5038 5423 1.336755 GCTTTGTTCCTCCTGCGAAAA 59.663 47.619 0.00 0.00 0.00 2.29
5072 5457 2.225019 CACATTGACAACAGCTCCTGTC 59.775 50.000 15.05 15.05 44.62 3.51
5096 5481 2.876091 TCGCCTACATCAACGAAAGAG 58.124 47.619 0.00 0.00 0.00 2.85
5159 5544 3.900601 CCTTCTGGTATCCACTCTATGCT 59.099 47.826 0.00 0.00 0.00 3.79
5179 5570 0.111061 TCTTCACTGTTGGCATGCCT 59.889 50.000 35.53 14.23 36.94 4.75
5181 5572 0.109412 GCTCTTCACTGTTGGCATGC 60.109 55.000 9.90 9.90 0.00 4.06
5182 5573 1.531423 AGCTCTTCACTGTTGGCATG 58.469 50.000 0.00 0.00 0.00 4.06
5213 5604 6.127026 CGGATAATTAAACCAAAAATGGGGGA 60.127 38.462 11.02 0.00 0.00 4.81
5260 5651 9.973661 TCCCAGTATGATAAATGAGAAGAAAAA 57.026 29.630 0.00 0.00 39.69 1.94
5265 5658 6.043706 AGGGTCCCAGTATGATAAATGAGAAG 59.956 42.308 11.55 0.00 39.69 2.85
5289 5683 1.310933 ACGCCCGGTGTAGTGTAGAG 61.311 60.000 0.40 0.00 0.00 2.43
5291 5685 1.153901 CACGCCCGGTGTAGTGTAG 60.154 63.158 2.54 0.00 41.89 2.74
5292 5686 2.964174 CACGCCCGGTGTAGTGTA 59.036 61.111 2.54 0.00 41.89 2.90
5319 5713 3.057526 GGACCCAGGTGAAGAAAATTTCG 60.058 47.826 0.00 0.00 34.02 3.46
5324 5718 1.529744 AGGGACCCAGGTGAAGAAAA 58.470 50.000 14.60 0.00 0.00 2.29
5330 5724 0.840722 GGAGAAAGGGACCCAGGTGA 60.841 60.000 14.60 0.00 0.00 4.02
5331 5725 0.842467 AGGAGAAAGGGACCCAGGTG 60.842 60.000 14.60 0.00 0.00 4.00
5334 5728 1.280421 CTCAAGGAGAAAGGGACCCAG 59.720 57.143 14.60 0.00 0.00 4.45
5335 5729 1.362224 CTCAAGGAGAAAGGGACCCA 58.638 55.000 14.60 0.00 0.00 4.51
5338 5732 1.625818 TCAGCTCAAGGAGAAAGGGAC 59.374 52.381 0.00 0.00 0.00 4.46
5339 5733 1.625818 GTCAGCTCAAGGAGAAAGGGA 59.374 52.381 0.00 0.00 0.00 4.20
5366 5760 7.495606 TGCACTGTATATTCCATGTTAAGACTG 59.504 37.037 0.00 0.00 0.00 3.51
5383 5777 4.408921 TGCTAAGGTATTCCTGCACTGTAT 59.591 41.667 0.00 0.00 44.35 2.29
5444 5844 6.432162 AGCTCAGGCCACACATATATATTTTG 59.568 38.462 5.01 0.00 39.73 2.44
5450 5850 2.039480 CCAGCTCAGGCCACACATATAT 59.961 50.000 5.01 0.00 39.73 0.86
5459 5859 3.970410 CAACCCCAGCTCAGGCCA 61.970 66.667 5.01 0.00 39.73 5.36
5460 5860 4.748144 CCAACCCCAGCTCAGGCC 62.748 72.222 0.00 0.00 39.73 5.19
5493 5893 2.557490 GACAGGTTCTAGACTGGACGTT 59.443 50.000 13.33 0.00 39.00 3.99
5494 5894 2.161030 GACAGGTTCTAGACTGGACGT 58.839 52.381 13.33 0.00 39.00 4.34
5628 6032 2.177734 GGAACCCTACCGAGTTCTTCT 58.822 52.381 3.22 0.00 41.69 2.85
5722 6126 4.408821 GTGCGCATCCCTGTCCCA 62.409 66.667 15.91 0.00 0.00 4.37
5761 6165 0.874390 ATGCTGCTGTTAACCGTGTG 59.126 50.000 2.48 0.00 0.00 3.82
5813 6220 2.161211 GTCAGCTGCTGAATCTGTTTCC 59.839 50.000 31.88 13.78 42.46 3.13
5856 6263 4.467084 GGCATGGGCGAACTCGGA 62.467 66.667 0.69 0.00 42.47 4.55
5931 6340 2.524640 TACGCAGGGTGTGTGGGA 60.525 61.111 0.00 0.00 41.73 4.37
6000 6409 3.560068 AGTTCGTGAACCTAAACAAGCAG 59.440 43.478 9.03 0.00 42.06 4.24
6024 6433 1.293179 CCATCAGCTGACGGTCACA 59.707 57.895 20.74 0.00 0.00 3.58
6095 6504 4.321230 CCAACCAAGTAAATCCTCTTGTGC 60.321 45.833 0.00 0.00 39.25 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.