Multiple sequence alignment - TraesCS4A01G193900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G193900 chr4A 100.000 5572 0 0 1 5572 475901731 475907302 0.000000e+00 10290.0
1 TraesCS4A01G193900 chr4A 100.000 395 0 0 5844 6238 475907574 475907968 0.000000e+00 730.0
2 TraesCS4A01G193900 chr4D 93.205 3370 141 31 718 4049 100575742 100572423 0.000000e+00 4874.0
3 TraesCS4A01G193900 chr4D 94.637 634 26 2 4872 5505 100571987 100571362 0.000000e+00 976.0
4 TraesCS4A01G193900 chr4D 95.714 140 4 2 4045 4184 294454580 294454443 2.260000e-54 224.0
5 TraesCS4A01G193900 chr4D 91.367 139 10 1 5875 6013 100571371 100571235 8.260000e-44 189.0
6 TraesCS4A01G193900 chr4D 91.964 112 6 2 4426 4536 100572137 100572028 3.010000e-33 154.0
7 TraesCS4A01G193900 chr4D 78.409 176 23 7 4689 4850 91235136 91234962 3.980000e-17 100.0
8 TraesCS4A01G193900 chr4D 85.556 90 10 3 4697 4785 91232814 91232727 2.390000e-14 91.6
9 TraesCS4A01G193900 chr4D 96.429 56 1 1 5517 5572 312943328 312943382 2.390000e-14 91.6
10 TraesCS4A01G193900 chr4D 77.500 160 27 8 4614 4766 301027497 301027340 3.100000e-13 87.9
11 TraesCS4A01G193900 chr4D 92.157 51 4 0 4800 4850 49257389 49257339 8.670000e-09 73.1
12 TraesCS4A01G193900 chr4D 92.157 51 4 0 4800 4850 437030229 437030179 8.670000e-09 73.1
13 TraesCS4A01G193900 chr4D 92.000 50 2 1 6034 6083 100571236 100571189 1.120000e-07 69.4
14 TraesCS4A01G193900 chr4B 94.613 2970 107 20 752 3695 142933066 142930124 0.000000e+00 4549.0
15 TraesCS4A01G193900 chr4B 94.623 1060 45 6 4449 5505 142929509 142928459 0.000000e+00 1631.0
16 TraesCS4A01G193900 chr4B 98.056 720 11 2 1 718 3760710 3761428 0.000000e+00 1249.0
17 TraesCS4A01G193900 chr4B 94.273 681 15 2 39 717 630631006 630631664 0.000000e+00 1020.0
18 TraesCS4A01G193900 chr4B 91.892 592 15 6 3795 4355 142930097 142929508 0.000000e+00 797.0
19 TraesCS4A01G193900 chr4B 95.714 140 4 2 4045 4184 363314906 363314769 2.260000e-54 224.0
20 TraesCS4A01G193900 chr4B 86.395 147 15 4 5875 6018 142928468 142928324 8.370000e-34 156.0
21 TraesCS4A01G193900 chr4B 75.479 261 38 11 4614 4850 42938419 42938161 3.080000e-18 104.0
22 TraesCS4A01G193900 chr4B 74.170 271 32 18 4615 4850 189738685 189738952 1.860000e-10 78.7
23 TraesCS4A01G193900 chr6A 99.443 718 3 1 1 718 466658407 466657691 0.000000e+00 1303.0
24 TraesCS4A01G193900 chr6A 97.781 721 13 2 1 719 574252516 574253235 0.000000e+00 1240.0
25 TraesCS4A01G193900 chr6A 95.714 140 5 1 4045 4184 381088705 381088843 2.260000e-54 224.0
26 TraesCS4A01G193900 chr7B 98.491 729 9 2 1 729 730110272 730109546 0.000000e+00 1284.0
27 TraesCS4A01G193900 chr7B 97.214 718 16 3 3 718 138612155 138612870 0.000000e+00 1212.0
28 TraesCS4A01G193900 chr7B 97.810 137 1 2 4049 4184 213463442 213463577 1.050000e-57 235.0
29 TraesCS4A01G193900 chr6B 98.466 717 10 1 1 717 42474186 42473471 0.000000e+00 1262.0
30 TraesCS4A01G193900 chr6B 75.197 254 38 13 4620 4850 1401267 1401016 5.150000e-16 97.1
31 TraesCS4A01G193900 chr1B 97.521 726 15 2 1 724 355681728 355681004 0.000000e+00 1238.0
32 TraesCS4A01G193900 chr1B 96.491 57 1 1 5516 5572 296806472 296806527 6.660000e-15 93.5
33 TraesCS4A01G193900 chr1B 92.727 55 3 1 4796 4850 647164879 647164826 1.860000e-10 78.7
34 TraesCS4A01G193900 chr1B 88.710 62 7 0 4789 4850 17975813 17975752 6.710000e-10 76.8
35 TraesCS4A01G193900 chr5B 80.331 1693 268 45 1649 3298 273136183 273137853 0.000000e+00 1221.0
36 TraesCS4A01G193900 chr5B 89.349 169 17 1 3813 3980 273138483 273138651 1.760000e-50 211.0
37 TraesCS4A01G193900 chr5B 79.697 330 38 24 4922 5240 273138843 273139154 1.760000e-50 211.0
38 TraesCS4A01G193900 chr5D 79.726 1677 280 43 1659 3296 232141222 232139567 0.000000e+00 1158.0
39 TraesCS4A01G193900 chr5D 95.714 140 5 1 4045 4184 360541856 360541994 2.260000e-54 224.0
40 TraesCS4A01G193900 chr5D 87.574 169 20 1 3813 3980 232138934 232138766 1.770000e-45 195.0
41 TraesCS4A01G193900 chr5D 88.710 62 7 0 4789 4850 342952094 342952155 6.710000e-10 76.8
42 TraesCS4A01G193900 chr5A 79.753 1699 265 58 1649 3298 324071227 324072895 0.000000e+00 1158.0
43 TraesCS4A01G193900 chr5A 76.128 909 186 17 1810 2700 46146914 46146019 1.230000e-121 448.0
44 TraesCS4A01G193900 chr5A 89.349 169 17 1 3813 3980 324073501 324073669 1.760000e-50 211.0
45 TraesCS4A01G193900 chr5A 78.419 329 48 18 4922 5241 324073858 324074172 6.380000e-45 193.0
46 TraesCS4A01G193900 chr5A 80.488 246 35 8 4614 4851 374897080 374897320 6.430000e-40 176.0
47 TraesCS4A01G193900 chr5A 93.137 102 5 2 4351 4452 230755592 230755691 1.400000e-31 148.0
48 TraesCS4A01G193900 chr5A 93.478 46 2 1 4649 4694 342451878 342451922 4.040000e-07 67.6
49 TraesCS4A01G193900 chr2B 85.190 709 83 16 14 714 12284527 12285221 0.000000e+00 708.0
50 TraesCS4A01G193900 chr7D 97.059 136 4 0 4049 4184 236827382 236827517 4.860000e-56 230.0
51 TraesCS4A01G193900 chr7D 87.302 63 8 0 4788 4850 84998958 84998896 8.670000e-09 73.1
52 TraesCS4A01G193900 chr1A 97.761 134 2 1 4052 4184 432978189 432978056 4.860000e-56 230.0
53 TraesCS4A01G193900 chr1A 94.059 101 6 0 4351 4451 577759894 577759794 3.010000e-33 154.0
54 TraesCS4A01G193900 chr1A 88.889 63 5 2 4789 4850 288861600 288861539 6.710000e-10 76.8
55 TraesCS4A01G193900 chr1A 88.710 62 7 0 4789 4850 575469403 575469464 6.710000e-10 76.8
56 TraesCS4A01G193900 chr6D 96.324 136 5 0 4049 4184 249987212 249987077 2.260000e-54 224.0
57 TraesCS4A01G193900 chr6D 94.949 99 5 0 4352 4450 428262139 428262041 8.370000e-34 156.0
58 TraesCS4A01G193900 chr6D 98.246 57 1 0 5516 5572 420569586 420569530 3.980000e-17 100.0
59 TraesCS4A01G193900 chr6D 92.157 51 4 0 4800 4850 143496073 143496123 8.670000e-09 73.1
60 TraesCS4A01G193900 chr6D 92.000 50 4 0 4801 4850 462491495 462491544 3.120000e-08 71.3
61 TraesCS4A01G193900 chr6D 85.714 63 9 0 4788 4850 15786467 15786405 4.040000e-07 67.6
62 TraesCS4A01G193900 chr6D 91.667 48 4 0 4804 4851 155231170 155231123 4.040000e-07 67.6
63 TraesCS4A01G193900 chr6D 90.196 51 5 0 4800 4850 245462885 245462835 4.040000e-07 67.6
64 TraesCS4A01G193900 chr3A 96.078 102 4 0 4351 4452 110715607 110715506 3.870000e-37 167.0
65 TraesCS4A01G193900 chr3B 95.918 98 4 0 4353 4450 257342287 257342190 6.470000e-35 159.0
66 TraesCS4A01G193900 chr3B 91.667 108 7 2 4353 4458 549335663 549335556 1.400000e-31 148.0
67 TraesCS4A01G193900 chr3B 90.991 111 8 2 4353 4461 714048528 714048638 1.400000e-31 148.0
68 TraesCS4A01G193900 chr3B 73.541 257 43 10 4617 4850 769406214 769406468 2.410000e-09 75.0
69 TraesCS4A01G193900 chr3B 85.333 75 6 5 4787 4858 697076920 697076848 8.670000e-09 73.1
70 TraesCS4A01G193900 chrUn 93.269 104 6 1 4354 4457 305213228 305213126 1.080000e-32 152.0
71 TraesCS4A01G193900 chrUn 92.157 51 4 0 4800 4850 40187446 40187396 8.670000e-09 73.1
72 TraesCS4A01G193900 chrUn 87.302 63 8 0 4788 4850 87230899 87230961 8.670000e-09 73.1
73 TraesCS4A01G193900 chrUn 85.484 62 9 0 4789 4850 201298192 201298253 1.450000e-06 65.8
74 TraesCS4A01G193900 chrUn 88.235 51 6 0 4800 4850 74804379 74804329 1.880000e-05 62.1
75 TraesCS4A01G193900 chrUn 88.000 50 6 0 4801 4850 136407289 136407338 6.750000e-05 60.2
76 TraesCS4A01G193900 chr3D 88.889 117 12 1 4354 4470 19269718 19269833 6.520000e-30 143.0
77 TraesCS4A01G193900 chr3D 89.091 55 5 1 4796 4850 560111018 560110965 4.040000e-07 67.6
78 TraesCS4A01G193900 chr1D 92.157 51 4 0 4800 4850 36497462 36497412 8.670000e-09 73.1
79 TraesCS4A01G193900 chr1D 92.000 50 4 0 4801 4850 483256633 483256682 3.120000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G193900 chr4A 475901731 475907968 6237 False 5510.000000 10290 100.000000 1 6238 2 chr4A.!!$F1 6237
1 TraesCS4A01G193900 chr4D 100571189 100575742 4553 True 1252.480000 4874 92.634600 718 6083 5 chr4D.!!$R6 5365
2 TraesCS4A01G193900 chr4B 142928324 142933066 4742 True 1783.250000 4549 91.880750 752 6018 4 chr4B.!!$R3 5266
3 TraesCS4A01G193900 chr4B 3760710 3761428 718 False 1249.000000 1249 98.056000 1 718 1 chr4B.!!$F1 717
4 TraesCS4A01G193900 chr4B 630631006 630631664 658 False 1020.000000 1020 94.273000 39 717 1 chr4B.!!$F3 678
5 TraesCS4A01G193900 chr6A 466657691 466658407 716 True 1303.000000 1303 99.443000 1 718 1 chr6A.!!$R1 717
6 TraesCS4A01G193900 chr6A 574252516 574253235 719 False 1240.000000 1240 97.781000 1 719 1 chr6A.!!$F2 718
7 TraesCS4A01G193900 chr7B 730109546 730110272 726 True 1284.000000 1284 98.491000 1 729 1 chr7B.!!$R1 728
8 TraesCS4A01G193900 chr7B 138612155 138612870 715 False 1212.000000 1212 97.214000 3 718 1 chr7B.!!$F1 715
9 TraesCS4A01G193900 chr6B 42473471 42474186 715 True 1262.000000 1262 98.466000 1 717 1 chr6B.!!$R2 716
10 TraesCS4A01G193900 chr1B 355681004 355681728 724 True 1238.000000 1238 97.521000 1 724 1 chr1B.!!$R2 723
11 TraesCS4A01G193900 chr5B 273136183 273139154 2971 False 547.666667 1221 83.125667 1649 5240 3 chr5B.!!$F1 3591
12 TraesCS4A01G193900 chr5D 232138766 232141222 2456 True 676.500000 1158 83.650000 1659 3980 2 chr5D.!!$R1 2321
13 TraesCS4A01G193900 chr5A 324071227 324074172 2945 False 520.666667 1158 82.507000 1649 5241 3 chr5A.!!$F4 3592
14 TraesCS4A01G193900 chr5A 46146019 46146914 895 True 448.000000 448 76.128000 1810 2700 1 chr5A.!!$R1 890
15 TraesCS4A01G193900 chr2B 12284527 12285221 694 False 708.000000 708 85.190000 14 714 1 chr2B.!!$F1 700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
886 898 1.079127 AGCACCGCCATAGACACAC 60.079 57.895 0.00 0.0 0.00 3.82 F
1345 1357 0.030235 ACCGCTTCTTCGTTTTTGCC 59.970 50.000 0.00 0.0 0.00 4.52 F
1406 1418 0.248784 GAGGCTGCGCATGGAAATTC 60.249 55.000 12.24 0.0 0.00 2.17 F
1413 1425 1.141665 GCATGGAAATTCGGCCCAC 59.858 57.895 0.00 0.0 32.07 4.61 F
2041 2080 1.467920 CTTTAAAGGAGCAGCCCAGG 58.532 55.000 7.37 0.0 37.37 4.45 F
2898 2984 2.027561 TGATTTCACTACCTTCCCCACG 60.028 50.000 0.00 0.0 0.00 4.94 F
3793 4047 1.913778 ATTGCTGGTCACATTGCTGA 58.086 45.000 0.00 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1730 1769 2.535485 ATCGGCAACAAGGATCGCCA 62.535 55.000 7.66 0.0 45.14 5.69 R
3333 3438 1.537638 TGCCATGCAACGTTAAACGAT 59.462 42.857 0.00 0.0 38.83 3.73 R
3345 3450 1.849977 TTAGAAGCCAATGCCATGCA 58.150 45.000 0.00 0.0 44.86 3.96 R
3346 3451 2.965572 TTTAGAAGCCAATGCCATGC 57.034 45.000 0.00 0.0 38.69 4.06 R
3793 4047 3.012518 GCAGTTCAGCACCACATCTAAT 58.987 45.455 0.00 0.0 0.00 1.73 R
4083 4481 1.139256 GTTTCAGCTCTAGCCTACCCC 59.861 57.143 0.00 0.0 43.38 4.95 R
5506 5979 0.034477 TAAGCCACCCCTAGCAAAGC 60.034 55.000 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
886 898 1.079127 AGCACCGCCATAGACACAC 60.079 57.895 0.00 0.00 0.00 3.82
899 911 3.653009 CACACTGCACACGCCCAG 61.653 66.667 0.00 0.00 37.32 4.45
952 964 1.880340 GGATCGCGAGCTTGGACAG 60.880 63.158 24.94 0.00 0.00 3.51
978 990 1.515020 GATCAGAGCGCACCTGAGT 59.485 57.895 27.86 19.31 43.07 3.41
1248 1260 3.248043 CTGCAAGGGGTTCGATGAA 57.752 52.632 0.00 0.00 0.00 2.57
1345 1357 0.030235 ACCGCTTCTTCGTTTTTGCC 59.970 50.000 0.00 0.00 0.00 4.52
1356 1368 1.599419 CGTTTTTGCCGCTGCTAGTTT 60.599 47.619 0.70 0.00 38.71 2.66
1382 1394 0.602638 TGTGTGTCGATTGGCTGGAC 60.603 55.000 0.00 0.00 33.51 4.02
1387 1399 0.460987 GTCGATTGGCTGGACTGGAG 60.461 60.000 0.00 0.00 30.49 3.86
1396 1408 4.828925 GGACTGGAGAGGCTGCGC 62.829 72.222 0.00 0.00 0.00 6.09
1397 1409 4.074526 GACTGGAGAGGCTGCGCA 62.075 66.667 10.98 10.98 0.00 6.09
1398 1410 3.382803 GACTGGAGAGGCTGCGCAT 62.383 63.158 12.24 0.00 0.00 4.73
1399 1411 2.895865 CTGGAGAGGCTGCGCATG 60.896 66.667 12.24 6.51 0.00 4.06
1400 1412 4.478371 TGGAGAGGCTGCGCATGG 62.478 66.667 12.24 0.00 0.00 3.66
1401 1413 4.166888 GGAGAGGCTGCGCATGGA 62.167 66.667 12.24 0.00 0.00 3.41
1402 1414 2.124983 GAGAGGCTGCGCATGGAA 60.125 61.111 12.24 0.00 0.00 3.53
1403 1415 1.746615 GAGAGGCTGCGCATGGAAA 60.747 57.895 12.24 0.00 0.00 3.13
1404 1416 1.077212 AGAGGCTGCGCATGGAAAT 60.077 52.632 12.24 0.00 0.00 2.17
1405 1417 0.682209 AGAGGCTGCGCATGGAAATT 60.682 50.000 12.24 0.00 0.00 1.82
1406 1418 0.248784 GAGGCTGCGCATGGAAATTC 60.249 55.000 12.24 0.00 0.00 2.17
1407 1419 1.587088 GGCTGCGCATGGAAATTCG 60.587 57.895 12.24 0.00 0.00 3.34
1408 1420 1.587088 GCTGCGCATGGAAATTCGG 60.587 57.895 12.24 0.00 0.00 4.30
1409 1421 1.587088 CTGCGCATGGAAATTCGGC 60.587 57.895 12.24 0.00 0.00 5.54
1410 1422 2.278792 GCGCATGGAAATTCGGCC 60.279 61.111 0.30 0.00 0.00 6.13
1411 1423 2.412937 CGCATGGAAATTCGGCCC 59.587 61.111 0.00 0.00 0.00 5.80
1412 1424 2.413963 CGCATGGAAATTCGGCCCA 61.414 57.895 0.00 0.00 0.00 5.36
1413 1425 1.141665 GCATGGAAATTCGGCCCAC 59.858 57.895 0.00 0.00 32.07 4.61
1414 1426 1.603236 GCATGGAAATTCGGCCCACA 61.603 55.000 0.00 0.00 32.07 4.17
1432 1444 5.164954 CCCACACATTTTATTTAACCACGG 58.835 41.667 0.00 0.00 0.00 4.94
1436 1448 3.119424 ACATTTTATTTAACCACGGCCGG 60.119 43.478 31.76 18.27 0.00 6.13
1483 1495 6.877855 AGCGATGATGTGATTAAGCTGAATAT 59.122 34.615 0.00 0.00 32.01 1.28
1550 1588 4.752101 CCCTCACTGACTTGTTTTACTGAG 59.248 45.833 0.00 0.00 0.00 3.35
1693 1732 9.678941 TGTTGTTCTATATAGATTGCTACTTCG 57.321 33.333 13.22 0.00 31.40 3.79
1857 1896 3.560068 CGCTAATATCCAAAAGCTTCGGT 59.440 43.478 13.14 5.41 32.73 4.69
1996 2035 5.007034 ACGATGAATGTGGTCCAAAATGTA 58.993 37.500 0.00 0.00 0.00 2.29
2041 2080 1.467920 CTTTAAAGGAGCAGCCCAGG 58.532 55.000 7.37 0.00 37.37 4.45
2729 2810 7.660112 TCTTCGAAGTTGTACAATTACCAGTA 58.340 34.615 23.85 0.00 0.00 2.74
2898 2984 2.027561 TGATTTCACTACCTTCCCCACG 60.028 50.000 0.00 0.00 0.00 4.94
2911 2997 2.917933 TCCCCACGATTTATGCTCAAG 58.082 47.619 0.00 0.00 0.00 3.02
3052 3150 2.862541 ACATCACTGCTTGCAAGGTAA 58.137 42.857 27.10 4.85 0.00 2.85
3078 3177 6.325596 TCGAGTGATGTTATCTCTTTCTGTG 58.674 40.000 0.00 0.00 33.63 3.66
3096 3195 9.219603 CTTTCTGTGAATAGGTCATTGAGTTTA 57.780 33.333 0.00 0.00 38.90 2.01
3192 3295 2.033299 GTGTGTGAATGTCCAGTTGTGG 59.967 50.000 0.00 0.00 46.63 4.17
3218 3321 4.022676 GGTGTAAAATTCGTTGGTGATGGT 60.023 41.667 0.00 0.00 0.00 3.55
3224 3327 2.912690 TCGTTGGTGATGGTTACACA 57.087 45.000 0.00 0.00 39.65 3.72
3332 3437 2.877786 CTGTGTGTGTCACCTGCAAATA 59.122 45.455 0.00 0.00 45.61 1.40
3333 3438 3.282885 TGTGTGTGTCACCTGCAAATAA 58.717 40.909 0.00 0.00 45.61 1.40
3345 3450 5.854338 CACCTGCAAATAATCGTTTAACGTT 59.146 36.000 17.16 5.88 43.14 3.99
3346 3451 5.854338 ACCTGCAAATAATCGTTTAACGTTG 59.146 36.000 17.16 13.98 43.14 4.10
3380 3485 4.581824 GCTTCTAAATCATGGCATTGGAGA 59.418 41.667 0.00 0.00 0.00 3.71
3554 3700 6.395629 TCCATACTGCTTCTTAGTGTGTTAC 58.604 40.000 0.00 0.00 36.07 2.50
3555 3701 6.210784 TCCATACTGCTTCTTAGTGTGTTACT 59.789 38.462 0.00 0.00 43.56 2.24
3557 3703 8.033038 CCATACTGCTTCTTAGTGTGTTACTAA 58.967 37.037 0.00 0.00 46.81 2.24
3604 3750 4.567159 GTGCTTAACTACATACAGGCTGAC 59.433 45.833 23.66 0.00 0.00 3.51
3674 3820 7.724305 TGTGAAGGTAAGTCAATTACTGAAC 57.276 36.000 0.00 0.00 42.93 3.18
3712 3858 8.862492 GTAAGTCTTTACACTGCAAAACTTGCG 61.862 40.741 6.86 4.71 46.76 4.85
3723 3977 4.787381 CAAAACTTGCGGGTTTAAAAGG 57.213 40.909 7.16 0.00 38.30 3.11
3793 4047 1.913778 ATTGCTGGTCACATTGCTGA 58.086 45.000 0.00 0.00 0.00 4.26
4083 4481 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
4099 4497 0.466124 GTTGGGGTAGGCTAGAGCTG 59.534 60.000 0.00 0.00 41.70 4.24
4101 4499 0.338467 TGGGGTAGGCTAGAGCTGAA 59.662 55.000 0.00 0.00 41.70 3.02
4102 4500 1.273609 TGGGGTAGGCTAGAGCTGAAA 60.274 52.381 0.00 0.00 41.70 2.69
4103 4501 1.139256 GGGGTAGGCTAGAGCTGAAAC 59.861 57.143 0.00 0.00 41.70 2.78
4104 4502 1.139256 GGGTAGGCTAGAGCTGAAACC 59.861 57.143 0.00 4.43 41.70 3.27
4105 4503 1.139256 GGTAGGCTAGAGCTGAAACCC 59.861 57.143 0.00 0.00 41.70 4.11
4114 4520 5.453903 GCTAGAGCTGAAACCCATAAGATCA 60.454 44.000 0.00 0.00 38.21 2.92
4115 4521 5.643421 AGAGCTGAAACCCATAAGATCAT 57.357 39.130 0.00 0.00 0.00 2.45
4139 4545 0.883833 CCAACTCATGGTTCTGGCAC 59.116 55.000 0.00 0.00 44.85 5.01
4205 4611 0.321653 CCACTTGGTACAGAGCCCAC 60.322 60.000 0.00 0.00 42.39 4.61
4213 4619 3.008157 TGGTACAGAGCCCACGAAAAATA 59.992 43.478 0.00 0.00 0.00 1.40
4334 4740 6.420008 CCTTTCTTCTTCATCAAGTTGCAAAG 59.580 38.462 0.00 2.10 0.00 2.77
4345 4751 5.815581 TCAAGTTGCAAAGGGATACACTAT 58.184 37.500 0.00 0.00 39.74 2.12
4363 4769 4.466370 CACTATTGTGTTCTACTCCCTCCA 59.534 45.833 0.00 0.00 39.24 3.86
4368 4774 2.838202 GTGTTCTACTCCCTCCATTCCA 59.162 50.000 0.00 0.00 0.00 3.53
4374 4780 6.500589 TCTACTCCCTCCATTCCAAAATAG 57.499 41.667 0.00 0.00 0.00 1.73
4378 4784 5.433051 ACTCCCTCCATTCCAAAATAGATGA 59.567 40.000 0.00 0.00 0.00 2.92
4381 4787 5.767168 CCCTCCATTCCAAAATAGATGACTC 59.233 44.000 0.00 0.00 0.00 3.36
4382 4788 6.359804 CCTCCATTCCAAAATAGATGACTCA 58.640 40.000 0.00 0.00 0.00 3.41
4383 4789 6.830324 CCTCCATTCCAAAATAGATGACTCAA 59.170 38.462 0.00 0.00 0.00 3.02
4384 4790 7.201767 CCTCCATTCCAAAATAGATGACTCAAC 60.202 40.741 0.00 0.00 0.00 3.18
4385 4791 7.405292 TCCATTCCAAAATAGATGACTCAACT 58.595 34.615 0.00 0.00 0.00 3.16
4386 4792 7.890127 TCCATTCCAAAATAGATGACTCAACTT 59.110 33.333 0.00 0.00 0.00 2.66
4387 4793 8.186821 CCATTCCAAAATAGATGACTCAACTTC 58.813 37.037 0.00 0.00 0.00 3.01
4388 4794 8.733458 CATTCCAAAATAGATGACTCAACTTCA 58.267 33.333 0.00 0.00 0.00 3.02
4389 4795 8.868522 TTCCAAAATAGATGACTCAACTTCAT 57.131 30.769 0.00 0.00 36.37 2.57
4390 4796 9.958180 TTCCAAAATAGATGACTCAACTTCATA 57.042 29.630 0.00 0.00 33.70 2.15
4391 4797 9.383519 TCCAAAATAGATGACTCAACTTCATAC 57.616 33.333 0.00 0.00 33.70 2.39
4392 4798 9.388506 CCAAAATAGATGACTCAACTTCATACT 57.611 33.333 0.00 0.00 33.70 2.12
4400 4806 9.209175 GATGACTCAACTTCATACTAACTTTGT 57.791 33.333 0.00 0.00 33.70 2.83
4436 4906 6.727824 ACGAAGTTGAGTCATCTATTTTGG 57.272 37.500 4.14 0.00 37.78 3.28
4447 4917 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4450 4920 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
4452 4922 4.748277 TTTTGGAACGGAGGGAGTATAG 57.252 45.455 0.00 0.00 0.00 1.31
4453 4923 3.675348 TTGGAACGGAGGGAGTATAGA 57.325 47.619 0.00 0.00 0.00 1.98
4456 4926 5.329191 TGGAACGGAGGGAGTATAGAATA 57.671 43.478 0.00 0.00 0.00 1.75
4504 4974 8.416329 ACTATTGATGAGAAAATATGCCAAACC 58.584 33.333 0.00 0.00 0.00 3.27
4536 5006 3.978272 CAGAGCACTGGACTTGCC 58.022 61.111 2.82 0.00 41.18 4.52
4596 5066 4.670896 AGCACAACAACAAAGCCTTAAT 57.329 36.364 0.00 0.00 0.00 1.40
4629 5099 2.445427 CACCAAGGGCATGTACAATGA 58.555 47.619 0.00 0.00 0.00 2.57
4794 5265 8.504005 TCTTAATTAAGAGAAGGCGTTTCTTTG 58.496 33.333 21.46 0.00 46.12 2.77
4870 5341 9.673454 TGTACACAGATATAGCAACGTATAAAG 57.327 33.333 0.00 0.00 0.00 1.85
5045 5517 3.832615 AAGTATTGGATCCGGGTACAC 57.167 47.619 0.00 0.00 0.00 2.90
5268 5740 0.103208 AGAGCGGCTTATGGAACGAG 59.897 55.000 2.97 0.00 0.00 4.18
5298 5770 3.244526 TGTCTGGCATGTGTGATTGTAGT 60.245 43.478 0.00 0.00 0.00 2.73
5327 5799 9.967346 TCTTATTGTACAGCATACTAAGACATC 57.033 33.333 0.00 0.00 0.00 3.06
5377 5849 0.530870 GCCAAGACATAGCGGACTCC 60.531 60.000 0.00 0.00 0.00 3.85
5378 5850 1.115467 CCAAGACATAGCGGACTCCT 58.885 55.000 0.00 0.00 0.00 3.69
5379 5851 1.482593 CCAAGACATAGCGGACTCCTT 59.517 52.381 0.00 0.00 0.00 3.36
5380 5852 2.544685 CAAGACATAGCGGACTCCTTG 58.455 52.381 0.00 0.00 0.00 3.61
5381 5853 1.853963 AGACATAGCGGACTCCTTGT 58.146 50.000 0.00 0.00 0.00 3.16
5382 5854 2.180276 AGACATAGCGGACTCCTTGTT 58.820 47.619 0.00 0.00 0.00 2.83
5383 5855 2.093973 AGACATAGCGGACTCCTTGTTG 60.094 50.000 0.00 0.00 0.00 3.33
5415 5888 4.572909 AGGATGTTTAAACCGTACAGTCC 58.427 43.478 15.59 10.62 0.00 3.85
5475 5948 2.027192 GGCGAATCATATCAGCCCCTTA 60.027 50.000 0.00 0.00 41.81 2.69
5484 5957 0.547712 TCAGCCCCTTAGACCTTGCT 60.548 55.000 0.00 0.00 0.00 3.91
5491 5964 3.456277 CCCCTTAGACCTTGCTGATAAGT 59.544 47.826 0.00 0.00 0.00 2.24
5505 5978 8.504812 TTGCTGATAAGTGCACTTAATTATGA 57.495 30.769 35.91 19.02 41.27 2.15
5506 5979 8.146479 TGCTGATAAGTGCACTTAATTATGAG 57.854 34.615 35.91 25.92 41.27 2.90
5507 5980 7.074502 GCTGATAAGTGCACTTAATTATGAGC 58.925 38.462 35.91 30.12 39.34 4.26
5508 5981 7.041508 GCTGATAAGTGCACTTAATTATGAGCT 60.042 37.037 35.91 20.26 41.38 4.09
5509 5982 8.737168 TGATAAGTGCACTTAATTATGAGCTT 57.263 30.769 35.91 19.60 41.27 3.74
5510 5983 9.177608 TGATAAGTGCACTTAATTATGAGCTTT 57.822 29.630 35.91 19.13 41.27 3.51
5511 5984 9.443283 GATAAGTGCACTTAATTATGAGCTTTG 57.557 33.333 35.91 3.14 41.27 2.77
5512 5985 5.644644 AGTGCACTTAATTATGAGCTTTGC 58.355 37.500 15.25 11.11 0.00 3.68
5513 5986 5.416952 AGTGCACTTAATTATGAGCTTTGCT 59.583 36.000 15.25 10.04 43.88 3.91
5514 5987 6.599244 AGTGCACTTAATTATGAGCTTTGCTA 59.401 34.615 15.25 0.00 39.88 3.49
5515 5988 6.909357 GTGCACTTAATTATGAGCTTTGCTAG 59.091 38.462 10.32 0.00 39.88 3.42
5516 5989 6.038603 TGCACTTAATTATGAGCTTTGCTAGG 59.961 38.462 17.39 0.00 39.88 3.02
5517 5990 6.514048 GCACTTAATTATGAGCTTTGCTAGGG 60.514 42.308 11.77 0.00 39.88 3.53
5518 5991 6.016777 CACTTAATTATGAGCTTTGCTAGGGG 60.017 42.308 5.43 0.00 39.88 4.79
5519 5992 4.526438 AATTATGAGCTTTGCTAGGGGT 57.474 40.909 0.00 0.00 39.88 4.95
5520 5993 3.281727 TTATGAGCTTTGCTAGGGGTG 57.718 47.619 0.00 0.00 39.88 4.61
5521 5994 0.257039 ATGAGCTTTGCTAGGGGTGG 59.743 55.000 0.00 0.00 39.88 4.61
5522 5995 1.750780 GAGCTTTGCTAGGGGTGGC 60.751 63.158 0.00 0.00 39.88 5.01
5523 5996 2.203549 GAGCTTTGCTAGGGGTGGCT 62.204 60.000 0.00 0.00 39.88 4.75
5524 5997 1.304464 GCTTTGCTAGGGGTGGCTT 60.304 57.895 0.00 0.00 0.00 4.35
5525 5998 0.034477 GCTTTGCTAGGGGTGGCTTA 60.034 55.000 0.00 0.00 0.00 3.09
5526 5999 2.019156 GCTTTGCTAGGGGTGGCTTAG 61.019 57.143 0.00 0.00 0.00 2.18
5527 6000 0.034477 TTTGCTAGGGGTGGCTTAGC 60.034 55.000 0.00 0.00 40.09 3.09
5528 6001 0.914417 TTGCTAGGGGTGGCTTAGCT 60.914 55.000 3.59 0.00 40.28 3.32
5529 6002 1.147153 GCTAGGGGTGGCTTAGCTG 59.853 63.158 3.59 0.00 37.43 4.24
5530 6003 1.832912 CTAGGGGTGGCTTAGCTGG 59.167 63.158 3.59 0.00 0.00 4.85
5531 6004 0.691078 CTAGGGGTGGCTTAGCTGGA 60.691 60.000 3.59 0.00 0.00 3.86
5532 6005 0.252974 TAGGGGTGGCTTAGCTGGAA 60.253 55.000 3.59 0.00 0.00 3.53
5533 6006 0.921256 AGGGGTGGCTTAGCTGGAAT 60.921 55.000 3.59 0.00 0.00 3.01
5534 6007 0.843984 GGGGTGGCTTAGCTGGAATA 59.156 55.000 3.59 0.00 0.00 1.75
5535 6008 1.214424 GGGGTGGCTTAGCTGGAATAA 59.786 52.381 3.59 0.00 0.00 1.40
5536 6009 2.298610 GGGTGGCTTAGCTGGAATAAC 58.701 52.381 3.59 0.00 0.00 1.89
5537 6010 2.356741 GGGTGGCTTAGCTGGAATAACA 60.357 50.000 3.59 0.00 0.00 2.41
5538 6011 3.555966 GGTGGCTTAGCTGGAATAACAT 58.444 45.455 3.59 0.00 0.00 2.71
5539 6012 3.316308 GGTGGCTTAGCTGGAATAACATG 59.684 47.826 3.59 0.00 0.00 3.21
5540 6013 4.199310 GTGGCTTAGCTGGAATAACATGA 58.801 43.478 3.59 0.00 0.00 3.07
5541 6014 4.823989 GTGGCTTAGCTGGAATAACATGAT 59.176 41.667 3.59 0.00 0.00 2.45
5542 6015 5.300286 GTGGCTTAGCTGGAATAACATGATT 59.700 40.000 3.59 0.00 0.00 2.57
5543 6016 5.300034 TGGCTTAGCTGGAATAACATGATTG 59.700 40.000 3.59 0.00 0.00 2.67
5544 6017 5.278660 GGCTTAGCTGGAATAACATGATTGG 60.279 44.000 3.59 0.00 0.00 3.16
5545 6018 5.278660 GCTTAGCTGGAATAACATGATTGGG 60.279 44.000 0.00 0.00 0.00 4.12
5546 6019 4.524802 AGCTGGAATAACATGATTGGGA 57.475 40.909 0.00 0.00 0.00 4.37
5547 6020 4.467769 AGCTGGAATAACATGATTGGGAG 58.532 43.478 0.00 0.00 0.00 4.30
5548 6021 4.166725 AGCTGGAATAACATGATTGGGAGA 59.833 41.667 0.00 0.00 0.00 3.71
5549 6022 4.889409 GCTGGAATAACATGATTGGGAGAA 59.111 41.667 0.00 0.00 0.00 2.87
5550 6023 5.360714 GCTGGAATAACATGATTGGGAGAAA 59.639 40.000 0.00 0.00 0.00 2.52
5551 6024 6.041296 GCTGGAATAACATGATTGGGAGAAAT 59.959 38.462 0.00 0.00 0.00 2.17
5552 6025 7.231317 GCTGGAATAACATGATTGGGAGAAATA 59.769 37.037 0.00 0.00 0.00 1.40
5553 6026 9.135189 CTGGAATAACATGATTGGGAGAAATAA 57.865 33.333 0.00 0.00 0.00 1.40
5554 6027 9.135189 TGGAATAACATGATTGGGAGAAATAAG 57.865 33.333 0.00 0.00 0.00 1.73
5555 6028 9.136323 GGAATAACATGATTGGGAGAAATAAGT 57.864 33.333 0.00 0.00 0.00 2.24
5556 6029 9.956720 GAATAACATGATTGGGAGAAATAAGTG 57.043 33.333 0.00 0.00 0.00 3.16
5557 6030 9.479549 AATAACATGATTGGGAGAAATAAGTGT 57.520 29.630 0.00 0.00 0.00 3.55
5558 6031 6.764308 ACATGATTGGGAGAAATAAGTGTG 57.236 37.500 0.00 0.00 0.00 3.82
5559 6032 6.484288 ACATGATTGGGAGAAATAAGTGTGA 58.516 36.000 0.00 0.00 0.00 3.58
5560 6033 6.600822 ACATGATTGGGAGAAATAAGTGTGAG 59.399 38.462 0.00 0.00 0.00 3.51
5561 6034 5.500234 TGATTGGGAGAAATAAGTGTGAGG 58.500 41.667 0.00 0.00 0.00 3.86
5562 6035 4.301072 TTGGGAGAAATAAGTGTGAGGG 57.699 45.455 0.00 0.00 0.00 4.30
5563 6036 2.576191 TGGGAGAAATAAGTGTGAGGGG 59.424 50.000 0.00 0.00 0.00 4.79
5564 6037 2.644676 GGAGAAATAAGTGTGAGGGGC 58.355 52.381 0.00 0.00 0.00 5.80
5565 6038 2.644676 GAGAAATAAGTGTGAGGGGCC 58.355 52.381 0.00 0.00 0.00 5.80
5566 6039 1.285078 AGAAATAAGTGTGAGGGGCCC 59.715 52.381 17.12 17.12 0.00 5.80
5567 6040 0.335019 AAATAAGTGTGAGGGGCCCC 59.665 55.000 35.90 35.90 0.00 5.80
5568 6041 0.849094 AATAAGTGTGAGGGGCCCCA 60.849 55.000 42.48 21.63 38.92 4.96
5569 6042 1.571773 ATAAGTGTGAGGGGCCCCAC 61.572 60.000 42.48 36.28 38.92 4.61
5570 6043 2.993038 TAAGTGTGAGGGGCCCCACA 62.993 60.000 42.48 38.60 40.56 4.17
5860 6333 4.924019 TCCGTATTTGTCAGGGCG 57.076 55.556 0.00 0.00 0.00 6.13
5861 6334 1.976898 TCCGTATTTGTCAGGGCGT 59.023 52.632 0.00 0.00 0.00 5.68
5862 6335 0.322322 TCCGTATTTGTCAGGGCGTT 59.678 50.000 0.00 0.00 0.00 4.84
5863 6336 1.161843 CCGTATTTGTCAGGGCGTTT 58.838 50.000 0.00 0.00 0.00 3.60
5864 6337 2.028294 TCCGTATTTGTCAGGGCGTTTA 60.028 45.455 0.00 0.00 0.00 2.01
5865 6338 2.350498 CCGTATTTGTCAGGGCGTTTAG 59.650 50.000 0.00 0.00 0.00 1.85
5866 6339 3.255725 CGTATTTGTCAGGGCGTTTAGA 58.744 45.455 0.00 0.00 0.00 2.10
5867 6340 3.680937 CGTATTTGTCAGGGCGTTTAGAA 59.319 43.478 0.00 0.00 0.00 2.10
5868 6341 4.331717 CGTATTTGTCAGGGCGTTTAGAAT 59.668 41.667 0.00 0.00 0.00 2.40
5869 6342 5.163794 CGTATTTGTCAGGGCGTTTAGAATT 60.164 40.000 0.00 0.00 0.00 2.17
5870 6343 5.722021 ATTTGTCAGGGCGTTTAGAATTT 57.278 34.783 0.00 0.00 0.00 1.82
5871 6344 5.523438 TTTGTCAGGGCGTTTAGAATTTT 57.477 34.783 0.00 0.00 0.00 1.82
5872 6345 4.759516 TGTCAGGGCGTTTAGAATTTTC 57.240 40.909 0.00 0.00 0.00 2.29
5873 6346 3.187637 TGTCAGGGCGTTTAGAATTTTCG 59.812 43.478 0.00 0.00 0.00 3.46
5874 6347 2.160813 TCAGGGCGTTTAGAATTTTCGC 59.839 45.455 0.00 0.00 44.95 4.70
5875 6348 2.161609 CAGGGCGTTTAGAATTTTCGCT 59.838 45.455 7.69 0.00 45.01 4.93
5876 6349 2.817844 AGGGCGTTTAGAATTTTCGCTT 59.182 40.909 7.69 0.00 45.01 4.68
5877 6350 4.004982 AGGGCGTTTAGAATTTTCGCTTA 58.995 39.130 7.69 0.00 45.01 3.09
5878 6351 4.094442 AGGGCGTTTAGAATTTTCGCTTAG 59.906 41.667 7.69 0.00 45.01 2.18
5879 6352 4.142752 GGGCGTTTAGAATTTTCGCTTAGT 60.143 41.667 7.69 0.00 45.01 2.24
5880 6353 5.388111 GGCGTTTAGAATTTTCGCTTAGTT 58.612 37.500 7.69 0.00 45.01 2.24
5881 6354 6.402442 GGGCGTTTAGAATTTTCGCTTAGTTA 60.402 38.462 7.69 0.00 45.01 2.24
5882 6355 7.184779 GGCGTTTAGAATTTTCGCTTAGTTAT 58.815 34.615 7.69 0.00 45.01 1.89
5883 6356 7.163682 GGCGTTTAGAATTTTCGCTTAGTTATG 59.836 37.037 7.69 0.00 45.01 1.90
5884 6357 7.691050 GCGTTTAGAATTTTCGCTTAGTTATGT 59.309 33.333 0.00 0.00 42.88 2.29
5921 6394 7.885297 TCTAGCTGCATATTTTCAACTGTTTT 58.115 30.769 1.02 0.00 0.00 2.43
5954 6427 2.093500 TGTTAGCTCCACATCGAAGCAT 60.093 45.455 8.64 0.00 38.51 3.79
6000 6473 7.701539 TTAAATCAAATTTGCTCAGCTAGGA 57.298 32.000 13.54 0.00 33.82 2.94
6005 6478 9.578576 AATCAAATTTGCTCAGCTAGGAATATA 57.421 29.630 13.54 0.00 35.22 0.86
6075 6548 3.308053 CGAGCTATCACAGACACCAATTG 59.692 47.826 0.00 0.00 0.00 2.32
6080 6553 4.640771 ATCACAGACACCAATTGTAGGT 57.359 40.909 4.43 0.00 39.17 3.08
6083 6556 4.591498 TCACAGACACCAATTGTAGGTAGT 59.409 41.667 4.43 0.00 39.17 2.73
6084 6557 5.776208 TCACAGACACCAATTGTAGGTAGTA 59.224 40.000 4.43 0.00 39.17 1.82
6085 6558 5.867716 CACAGACACCAATTGTAGGTAGTAC 59.132 44.000 4.43 0.00 39.17 2.73
6086 6559 5.541101 ACAGACACCAATTGTAGGTAGTACA 59.459 40.000 4.43 0.00 39.17 2.90
6087 6560 6.100004 CAGACACCAATTGTAGGTAGTACAG 58.900 44.000 4.43 0.00 42.75 2.74
6088 6561 5.778750 AGACACCAATTGTAGGTAGTACAGT 59.221 40.000 4.43 0.00 42.75 3.55
6089 6562 6.950041 AGACACCAATTGTAGGTAGTACAGTA 59.050 38.462 4.43 0.00 42.75 2.74
6090 6563 6.928520 ACACCAATTGTAGGTAGTACAGTAC 58.071 40.000 4.43 2.05 42.75 2.73
6091 6564 6.723052 ACACCAATTGTAGGTAGTACAGTACT 59.277 38.462 17.51 17.51 42.75 2.73
6092 6565 7.890127 ACACCAATTGTAGGTAGTACAGTACTA 59.110 37.037 15.43 15.43 42.75 1.82
6093 6566 8.404000 CACCAATTGTAGGTAGTACAGTACTAG 58.596 40.741 19.16 7.51 42.75 2.57
6104 6577 8.546597 GTAGTACAGTACTAGCTTATAGTCCC 57.453 42.308 19.16 1.64 41.59 4.46
6105 6578 6.541907 AGTACAGTACTAGCTTATAGTCCCC 58.458 44.000 11.84 0.00 37.23 4.81
6106 6579 4.396522 ACAGTACTAGCTTATAGTCCCCG 58.603 47.826 0.00 0.00 0.00 5.73
6107 6580 3.190953 CAGTACTAGCTTATAGTCCCCGC 59.809 52.174 0.00 0.00 0.00 6.13
6108 6581 1.245732 ACTAGCTTATAGTCCCCGCG 58.754 55.000 0.00 0.00 0.00 6.46
6109 6582 1.202855 ACTAGCTTATAGTCCCCGCGA 60.203 52.381 8.23 0.00 0.00 5.87
6110 6583 1.884579 CTAGCTTATAGTCCCCGCGAA 59.115 52.381 8.23 0.00 0.00 4.70
6111 6584 1.117150 AGCTTATAGTCCCCGCGAAA 58.883 50.000 8.23 0.00 0.00 3.46
6112 6585 1.483415 AGCTTATAGTCCCCGCGAAAA 59.517 47.619 8.23 0.00 0.00 2.29
6113 6586 2.093341 AGCTTATAGTCCCCGCGAAAAA 60.093 45.455 8.23 0.00 0.00 1.94
6151 6624 9.439500 ACTAGCTTATAGTATTAGAGAAGGACG 57.561 37.037 0.00 0.00 0.00 4.79
6152 6625 7.148355 AGCTTATAGTATTAGAGAAGGACGC 57.852 40.000 0.29 0.00 0.00 5.19
6153 6626 6.022821 GCTTATAGTATTAGAGAAGGACGCG 58.977 44.000 3.53 3.53 0.00 6.01
6154 6627 6.128336 GCTTATAGTATTAGAGAAGGACGCGA 60.128 42.308 15.93 0.00 0.00 5.87
6155 6628 3.967203 AGTATTAGAGAAGGACGCGAC 57.033 47.619 15.93 6.56 0.00 5.19
6156 6629 3.543665 AGTATTAGAGAAGGACGCGACT 58.456 45.455 15.93 7.85 0.00 4.18
6157 6630 4.701765 AGTATTAGAGAAGGACGCGACTA 58.298 43.478 15.93 1.79 0.00 2.59
6158 6631 5.121811 AGTATTAGAGAAGGACGCGACTAA 58.878 41.667 15.93 10.51 0.00 2.24
6159 6632 3.754188 TTAGAGAAGGACGCGACTAAC 57.246 47.619 15.93 8.63 0.00 2.34
6160 6633 0.447011 AGAGAAGGACGCGACTAACG 59.553 55.000 15.93 0.00 45.66 3.18
6168 6641 0.302890 ACGCGACTAACGTCCTATCG 59.697 55.000 15.93 6.99 40.28 2.92
6169 6642 0.302890 CGCGACTAACGTCCTATCGT 59.697 55.000 0.00 0.00 46.19 3.73
6170 6643 1.739618 GCGACTAACGTCCTATCGTG 58.260 55.000 11.47 0.00 43.38 4.35
6171 6644 1.739618 CGACTAACGTCCTATCGTGC 58.260 55.000 0.00 0.00 43.38 5.34
6172 6645 1.739618 GACTAACGTCCTATCGTGCG 58.260 55.000 0.00 0.00 43.38 5.34
6173 6646 0.379669 ACTAACGTCCTATCGTGCGG 59.620 55.000 0.00 0.00 43.38 5.69
6174 6647 0.379669 CTAACGTCCTATCGTGCGGT 59.620 55.000 0.00 0.00 43.38 5.68
6175 6648 0.378257 TAACGTCCTATCGTGCGGTC 59.622 55.000 0.00 0.00 43.38 4.79
6176 6649 1.310933 AACGTCCTATCGTGCGGTCT 61.311 55.000 0.00 0.00 43.38 3.85
6177 6650 1.310933 ACGTCCTATCGTGCGGTCTT 61.311 55.000 0.00 0.00 42.56 3.01
6178 6651 0.179145 CGTCCTATCGTGCGGTCTTT 60.179 55.000 0.00 0.00 0.00 2.52
6179 6652 1.064505 CGTCCTATCGTGCGGTCTTTA 59.935 52.381 0.00 0.00 0.00 1.85
6180 6653 2.728922 GTCCTATCGTGCGGTCTTTAG 58.271 52.381 0.00 0.00 0.00 1.85
6181 6654 2.098770 GTCCTATCGTGCGGTCTTTAGT 59.901 50.000 0.00 0.00 0.00 2.24
6182 6655 3.313526 GTCCTATCGTGCGGTCTTTAGTA 59.686 47.826 0.00 0.00 0.00 1.82
6183 6656 3.947196 TCCTATCGTGCGGTCTTTAGTAA 59.053 43.478 0.00 0.00 0.00 2.24
6184 6657 4.040376 CCTATCGTGCGGTCTTTAGTAAC 58.960 47.826 0.00 0.00 0.00 2.50
6185 6658 3.581024 ATCGTGCGGTCTTTAGTAACA 57.419 42.857 0.00 0.00 0.00 2.41
6186 6659 2.937591 TCGTGCGGTCTTTAGTAACAG 58.062 47.619 0.00 0.00 0.00 3.16
6187 6660 2.553602 TCGTGCGGTCTTTAGTAACAGA 59.446 45.455 0.00 0.00 0.00 3.41
6188 6661 3.192001 TCGTGCGGTCTTTAGTAACAGAT 59.808 43.478 0.00 0.00 0.00 2.90
6189 6662 3.546670 CGTGCGGTCTTTAGTAACAGATC 59.453 47.826 0.00 0.00 0.00 2.75
6190 6663 3.864003 GTGCGGTCTTTAGTAACAGATCC 59.136 47.826 0.00 0.00 0.00 3.36
6191 6664 3.114065 GCGGTCTTTAGTAACAGATCCG 58.886 50.000 18.27 18.27 37.06 4.18
6192 6665 3.114065 CGGTCTTTAGTAACAGATCCGC 58.886 50.000 14.74 0.00 31.55 5.54
6193 6666 3.428452 CGGTCTTTAGTAACAGATCCGCA 60.428 47.826 14.74 0.00 31.55 5.69
6194 6667 3.864003 GGTCTTTAGTAACAGATCCGCAC 59.136 47.826 0.00 0.00 0.00 5.34
6195 6668 3.546670 GTCTTTAGTAACAGATCCGCACG 59.453 47.826 0.00 0.00 0.00 5.34
6196 6669 3.441222 TCTTTAGTAACAGATCCGCACGA 59.559 43.478 0.00 0.00 0.00 4.35
6197 6670 4.097437 TCTTTAGTAACAGATCCGCACGAT 59.903 41.667 0.00 0.00 0.00 3.73
6198 6671 2.961526 AGTAACAGATCCGCACGATT 57.038 45.000 0.00 0.00 0.00 3.34
6199 6672 2.810650 AGTAACAGATCCGCACGATTC 58.189 47.619 0.00 0.00 0.00 2.52
6200 6673 1.859080 GTAACAGATCCGCACGATTCC 59.141 52.381 0.00 0.00 0.00 3.01
6201 6674 0.249120 AACAGATCCGCACGATTCCA 59.751 50.000 0.00 0.00 0.00 3.53
6202 6675 0.249120 ACAGATCCGCACGATTCCAA 59.751 50.000 0.00 0.00 0.00 3.53
6203 6676 1.134401 ACAGATCCGCACGATTCCAAT 60.134 47.619 0.00 0.00 0.00 3.16
6204 6677 2.102420 ACAGATCCGCACGATTCCAATA 59.898 45.455 0.00 0.00 0.00 1.90
6205 6678 3.244215 ACAGATCCGCACGATTCCAATAT 60.244 43.478 0.00 0.00 0.00 1.28
6206 6679 3.748048 CAGATCCGCACGATTCCAATATT 59.252 43.478 0.00 0.00 0.00 1.28
6207 6680 4.214119 CAGATCCGCACGATTCCAATATTT 59.786 41.667 0.00 0.00 0.00 1.40
6208 6681 4.452455 AGATCCGCACGATTCCAATATTTC 59.548 41.667 0.00 0.00 0.00 2.17
6209 6682 3.536570 TCCGCACGATTCCAATATTTCA 58.463 40.909 0.00 0.00 0.00 2.69
6210 6683 4.133820 TCCGCACGATTCCAATATTTCAT 58.866 39.130 0.00 0.00 0.00 2.57
6211 6684 4.213270 TCCGCACGATTCCAATATTTCATC 59.787 41.667 0.00 0.00 0.00 2.92
6212 6685 4.143835 CGCACGATTCCAATATTTCATCG 58.856 43.478 14.74 14.74 41.97 3.84
6213 6686 4.084589 CGCACGATTCCAATATTTCATCGA 60.085 41.667 20.01 0.00 39.26 3.59
6214 6687 5.389830 CGCACGATTCCAATATTTCATCGAT 60.390 40.000 20.01 0.00 39.26 3.59
6215 6688 6.017933 GCACGATTCCAATATTTCATCGATC 58.982 40.000 20.01 11.24 39.26 3.69
6216 6689 6.128445 GCACGATTCCAATATTTCATCGATCT 60.128 38.462 20.01 3.52 39.26 2.75
6217 6690 7.451429 CACGATTCCAATATTTCATCGATCTC 58.549 38.462 20.01 0.00 39.26 2.75
6218 6691 7.330454 CACGATTCCAATATTTCATCGATCTCT 59.670 37.037 20.01 3.00 39.26 3.10
6219 6692 7.543868 ACGATTCCAATATTTCATCGATCTCTC 59.456 37.037 20.01 0.00 39.26 3.20
6220 6693 7.758980 CGATTCCAATATTTCATCGATCTCTCT 59.241 37.037 12.37 0.00 39.26 3.10
6221 6694 9.086336 GATTCCAATATTTCATCGATCTCTCTC 57.914 37.037 0.00 0.00 0.00 3.20
6222 6695 6.616017 TCCAATATTTCATCGATCTCTCTCG 58.384 40.000 0.00 0.00 39.99 4.04
6223 6696 6.207614 TCCAATATTTCATCGATCTCTCTCGT 59.792 38.462 0.00 0.00 39.62 4.18
6224 6697 6.865726 CCAATATTTCATCGATCTCTCTCGTT 59.134 38.462 0.00 0.00 39.62 3.85
6225 6698 7.383572 CCAATATTTCATCGATCTCTCTCGTTT 59.616 37.037 0.00 0.00 39.62 3.60
6226 6699 9.399403 CAATATTTCATCGATCTCTCTCGTTTA 57.601 33.333 0.00 0.00 39.62 2.01
6227 6700 9.619316 AATATTTCATCGATCTCTCTCGTTTAG 57.381 33.333 0.00 0.00 39.62 1.85
6228 6701 6.679327 TTTCATCGATCTCTCTCGTTTAGA 57.321 37.500 0.00 0.00 39.62 2.10
6229 6702 6.679327 TTCATCGATCTCTCTCGTTTAGAA 57.321 37.500 0.00 0.00 39.62 2.10
6230 6703 6.293713 TCATCGATCTCTCTCGTTTAGAAG 57.706 41.667 0.00 0.00 39.62 2.85
6231 6704 6.049790 TCATCGATCTCTCTCGTTTAGAAGA 58.950 40.000 0.00 0.00 39.62 2.87
6232 6705 5.721876 TCGATCTCTCTCGTTTAGAAGAC 57.278 43.478 0.00 0.00 39.62 3.01
6233 6706 4.571580 TCGATCTCTCTCGTTTAGAAGACC 59.428 45.833 0.00 0.00 39.62 3.85
6234 6707 4.573201 CGATCTCTCTCGTTTAGAAGACCT 59.427 45.833 0.00 0.00 32.46 3.85
6235 6708 5.277154 CGATCTCTCTCGTTTAGAAGACCTC 60.277 48.000 0.00 0.00 32.46 3.85
6236 6709 5.168647 TCTCTCTCGTTTAGAAGACCTCT 57.831 43.478 0.00 0.00 38.28 3.69
6237 6710 5.562635 TCTCTCTCGTTTAGAAGACCTCTT 58.437 41.667 0.00 0.00 39.23 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.430632 GAGTTATGACCCGCGACGA 59.569 57.895 8.23 0.00 0.00 4.20
628 637 2.835895 ACGCAAACAACCACCCCC 60.836 61.111 0.00 0.00 0.00 5.40
756 768 7.396419 CGTTTTCTTCTTCTTTCTCGTTTGTA 58.604 34.615 0.00 0.00 0.00 2.41
886 898 4.624364 TGGTCTGGGCGTGTGCAG 62.624 66.667 0.00 0.00 45.35 4.41
899 911 1.372087 CCGGAAGCAGCAGATTGGTC 61.372 60.000 0.00 0.00 0.00 4.02
978 990 4.323477 CGGGGGCAGAAACGGTGA 62.323 66.667 0.00 0.00 0.00 4.02
1248 1260 2.755103 GGCCTTGAAGGAAACATCGAAT 59.245 45.455 16.93 0.00 37.67 3.34
1345 1357 1.069022 ACACATGCAAAACTAGCAGCG 60.069 47.619 0.00 0.00 46.36 5.18
1356 1368 1.266446 CCAATCGACACACACATGCAA 59.734 47.619 0.00 0.00 0.00 4.08
1396 1408 0.173255 GTGTGGGCCGAATTTCCATG 59.827 55.000 0.00 0.00 32.71 3.66
1397 1409 0.251564 TGTGTGGGCCGAATTTCCAT 60.252 50.000 0.00 0.00 32.71 3.41
1398 1410 0.251564 ATGTGTGGGCCGAATTTCCA 60.252 50.000 0.00 0.00 0.00 3.53
1399 1411 0.894835 AATGTGTGGGCCGAATTTCC 59.105 50.000 0.00 0.00 0.00 3.13
1400 1412 2.741759 AAATGTGTGGGCCGAATTTC 57.258 45.000 0.00 0.00 0.00 2.17
1401 1413 4.817318 ATAAAATGTGTGGGCCGAATTT 57.183 36.364 0.00 0.00 0.00 1.82
1402 1414 4.817318 AATAAAATGTGTGGGCCGAATT 57.183 36.364 0.00 0.00 0.00 2.17
1403 1415 4.817318 AAATAAAATGTGTGGGCCGAAT 57.183 36.364 0.00 0.00 0.00 3.34
1404 1416 5.471257 GTTAAATAAAATGTGTGGGCCGAA 58.529 37.500 0.00 0.00 0.00 4.30
1405 1417 4.082136 GGTTAAATAAAATGTGTGGGCCGA 60.082 41.667 0.00 0.00 0.00 5.54
1406 1418 4.177783 GGTTAAATAAAATGTGTGGGCCG 58.822 43.478 0.00 0.00 0.00 6.13
1407 1419 4.932799 GTGGTTAAATAAAATGTGTGGGCC 59.067 41.667 0.00 0.00 0.00 5.80
1408 1420 4.623595 CGTGGTTAAATAAAATGTGTGGGC 59.376 41.667 0.00 0.00 0.00 5.36
1409 1421 5.164954 CCGTGGTTAAATAAAATGTGTGGG 58.835 41.667 0.00 0.00 0.00 4.61
1410 1422 4.623595 GCCGTGGTTAAATAAAATGTGTGG 59.376 41.667 0.00 0.00 0.00 4.17
1411 1423 4.623595 GGCCGTGGTTAAATAAAATGTGTG 59.376 41.667 0.00 0.00 0.00 3.82
1412 1424 4.616373 CGGCCGTGGTTAAATAAAATGTGT 60.616 41.667 19.50 0.00 0.00 3.72
1413 1425 3.854809 CGGCCGTGGTTAAATAAAATGTG 59.145 43.478 19.50 0.00 0.00 3.21
1414 1426 3.119424 CCGGCCGTGGTTAAATAAAATGT 60.119 43.478 26.12 0.00 0.00 2.71
1432 1444 4.298332 CAAGATGCAATAATTAACCCGGC 58.702 43.478 0.00 0.00 0.00 6.13
1550 1588 6.146021 CCAACAATAATTGGCTGAGAACAAAC 59.854 38.462 0.00 0.00 42.69 2.93
1730 1769 2.535485 ATCGGCAACAAGGATCGCCA 62.535 55.000 7.66 0.00 45.14 5.69
1857 1896 4.584743 TCGATAGCTTTCTTGAGCCTATCA 59.415 41.667 0.00 0.00 43.74 2.15
1996 2035 6.115446 TCTTGACGAAATCAATCTGGCTATT 58.885 36.000 0.00 0.00 46.37 1.73
2041 2080 6.100668 GTGTGTATCCCTTCTTCTCAAGTAC 58.899 44.000 0.00 0.00 0.00 2.73
2898 2984 5.975939 GCAAGTCAATCCTTGAGCATAAATC 59.024 40.000 5.17 0.00 43.65 2.17
2911 2997 3.365767 GCAAGAGACAAGCAAGTCAATCC 60.366 47.826 10.60 0.00 40.98 3.01
3052 3150 6.151985 ACAGAAAGAGATAACATCACTCGAGT 59.848 38.462 13.58 13.58 36.03 4.18
3078 3177 8.841300 GGGAGAAATAAACTCAATGACCTATTC 58.159 37.037 0.00 0.00 36.26 1.75
3096 3195 6.382087 AGGGTAAAACAGAAAAGGGAGAAAT 58.618 36.000 0.00 0.00 0.00 2.17
3192 3295 5.427036 TCACCAACGAATTTTACACCTTC 57.573 39.130 0.00 0.00 0.00 3.46
3224 3327 7.787904 TCCTGGTACTATATACCTTCACAATGT 59.212 37.037 4.81 0.00 38.39 2.71
3242 3345 8.753497 AAAGAAATATTCCTGATTCCTGGTAC 57.247 34.615 0.00 0.00 33.58 3.34
3332 3437 2.030717 TGCCATGCAACGTTAAACGATT 60.031 40.909 0.00 0.00 38.83 3.34
3333 3438 1.537638 TGCCATGCAACGTTAAACGAT 59.462 42.857 0.00 0.00 38.83 3.73
3345 3450 1.849977 TTAGAAGCCAATGCCATGCA 58.150 45.000 0.00 0.00 44.86 3.96
3346 3451 2.965572 TTTAGAAGCCAATGCCATGC 57.034 45.000 0.00 0.00 38.69 4.06
3446 3585 4.142315 CCAACAGCCTCCATTGTTAATCTG 60.142 45.833 0.00 0.00 35.86 2.90
3490 3629 7.698506 ACTTACAGTACAAGCAGAGTATGTA 57.301 36.000 0.00 0.00 0.00 2.29
3557 3703 8.253113 CACCAAGAATATGCTTTTAGGTCATTT 58.747 33.333 1.63 0.00 0.00 2.32
3560 3706 5.125417 GCACCAAGAATATGCTTTTAGGTCA 59.875 40.000 1.63 0.00 36.40 4.02
3561 3707 5.582550 GCACCAAGAATATGCTTTTAGGTC 58.417 41.667 1.63 0.00 36.40 3.85
3674 3820 5.640357 TGTAAAGACTTACAATGGCCTAACG 59.360 40.000 3.32 0.00 43.50 3.18
3712 3858 9.797556 GTACATATTCACATTCCTTTTAAACCC 57.202 33.333 0.00 0.00 0.00 4.11
3723 3977 8.621286 CCAACCCTAAAGTACATATTCACATTC 58.379 37.037 0.00 0.00 0.00 2.67
3793 4047 3.012518 GCAGTTCAGCACCACATCTAAT 58.987 45.455 0.00 0.00 0.00 1.73
4083 4481 1.139256 GTTTCAGCTCTAGCCTACCCC 59.861 57.143 0.00 0.00 43.38 4.95
4099 4497 6.773976 TGGTTTCATGATCTTATGGGTTTC 57.226 37.500 0.00 0.00 0.00 2.78
4101 4499 6.256053 AGTTGGTTTCATGATCTTATGGGTT 58.744 36.000 0.00 0.00 0.00 4.11
4102 4500 5.831103 AGTTGGTTTCATGATCTTATGGGT 58.169 37.500 0.00 0.00 0.00 4.51
4103 4501 5.887598 TGAGTTGGTTTCATGATCTTATGGG 59.112 40.000 0.00 0.00 0.00 4.00
4104 4502 7.578310 ATGAGTTGGTTTCATGATCTTATGG 57.422 36.000 0.00 0.00 34.14 2.74
4345 4751 3.263425 GGAATGGAGGGAGTAGAACACAA 59.737 47.826 0.00 0.00 0.00 3.33
4363 4769 8.868522 TGAAGTTGAGTCATCTATTTTGGAAT 57.131 30.769 4.14 0.00 0.00 3.01
4374 4780 9.209175 ACAAAGTTAGTATGAAGTTGAGTCATC 57.791 33.333 0.00 0.00 37.01 2.92
4409 4815 9.569167 CAAAATAGATGACTCAACTTCGTACTA 57.431 33.333 0.00 0.00 0.00 1.82
4412 4818 7.608153 TCCAAAATAGATGACTCAACTTCGTA 58.392 34.615 0.00 0.00 0.00 3.43
4413 4819 6.464222 TCCAAAATAGATGACTCAACTTCGT 58.536 36.000 0.00 0.00 0.00 3.85
4415 4821 7.237173 CGTTCCAAAATAGATGACTCAACTTC 58.763 38.462 0.00 0.00 0.00 3.01
4418 4824 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
4420 4826 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
4421 4827 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
4424 4894 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
4428 4898 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4434 4904 3.675348 TTCTATACTCCCTCCGTTCCA 57.325 47.619 0.00 0.00 0.00 3.53
4436 4906 7.614974 ACCTATTATTCTATACTCCCTCCGTTC 59.385 40.741 0.00 0.00 0.00 3.95
4536 5006 4.241590 TGCTCATTTTAAAGCTGGTGTG 57.758 40.909 0.00 0.00 39.31 3.82
4596 5066 1.678728 CCTTGGTGCGCCTCAAATAGA 60.679 52.381 18.96 0.00 35.27 1.98
4657 5127 4.466827 TGGTATCTCTAGATTACGTGGCA 58.533 43.478 0.00 0.00 36.05 4.92
4786 5257 2.291741 CTGAGGTGGCAGACAAAGAAAC 59.708 50.000 0.00 0.00 38.14 2.78
4794 5265 2.113860 TAAATGCTGAGGTGGCAGAC 57.886 50.000 0.00 0.00 43.15 3.51
4870 5341 4.937620 TCATGTCCAATGCTTAGACTTCAC 59.062 41.667 0.00 0.00 0.00 3.18
4895 5367 3.483808 TGTCAATTCAGTGTAGTGCCA 57.516 42.857 0.00 0.00 0.00 4.92
5031 5503 1.890489 CATATCGTGTACCCGGATCCA 59.110 52.381 13.41 0.00 0.00 3.41
5045 5517 7.539712 AACATGTAAGAGGTTGTTCATATCG 57.460 36.000 0.00 0.00 0.00 2.92
5298 5770 9.967346 GTCTTAGTATGCTGTACAATAAGATCA 57.033 33.333 0.00 0.00 35.80 2.92
5354 5826 0.108186 TCCGCTATGTCTTGGCACTG 60.108 55.000 0.00 0.00 0.00 3.66
5377 5849 0.662619 TCCTCGCAACAAGCAACAAG 59.337 50.000 0.00 0.00 46.13 3.16
5378 5850 1.001487 CATCCTCGCAACAAGCAACAA 60.001 47.619 0.00 0.00 46.13 2.83
5379 5851 0.592637 CATCCTCGCAACAAGCAACA 59.407 50.000 0.00 0.00 46.13 3.33
5380 5852 0.593128 ACATCCTCGCAACAAGCAAC 59.407 50.000 0.00 0.00 46.13 4.17
5381 5853 1.317613 AACATCCTCGCAACAAGCAA 58.682 45.000 0.00 0.00 46.13 3.91
5382 5854 1.317613 AAACATCCTCGCAACAAGCA 58.682 45.000 0.00 0.00 46.13 3.91
5383 5855 3.552604 TTAAACATCCTCGCAACAAGC 57.447 42.857 0.00 0.00 40.87 4.01
5475 5948 2.304180 AGTGCACTTATCAGCAAGGTCT 59.696 45.455 15.25 0.00 43.20 3.85
5484 5957 8.737168 AAGCTCATAATTAAGTGCACTTATCA 57.263 30.769 33.72 23.08 38.16 2.15
5491 5964 5.902613 AGCAAAGCTCATAATTAAGTGCA 57.097 34.783 14.87 0.00 30.62 4.57
5505 5978 1.793820 AAGCCACCCCTAGCAAAGCT 61.794 55.000 0.00 0.00 43.41 3.74
5506 5979 0.034477 TAAGCCACCCCTAGCAAAGC 60.034 55.000 0.00 0.00 0.00 3.51
5507 5980 2.019156 GCTAAGCCACCCCTAGCAAAG 61.019 57.143 0.00 0.00 34.22 2.77
5508 5981 0.034477 GCTAAGCCACCCCTAGCAAA 60.034 55.000 0.00 0.00 34.22 3.68
5509 5982 0.914417 AGCTAAGCCACCCCTAGCAA 60.914 55.000 3.41 0.00 36.33 3.91
5510 5983 1.306997 AGCTAAGCCACCCCTAGCA 60.307 57.895 3.41 0.00 36.33 3.49
5511 5984 1.147153 CAGCTAAGCCACCCCTAGC 59.853 63.158 0.00 0.00 0.00 3.42
5512 5985 0.691078 TCCAGCTAAGCCACCCCTAG 60.691 60.000 0.00 0.00 0.00 3.02
5513 5986 0.252974 TTCCAGCTAAGCCACCCCTA 60.253 55.000 0.00 0.00 0.00 3.53
5514 5987 0.921256 ATTCCAGCTAAGCCACCCCT 60.921 55.000 0.00 0.00 0.00 4.79
5515 5988 0.843984 TATTCCAGCTAAGCCACCCC 59.156 55.000 0.00 0.00 0.00 4.95
5516 5989 2.298610 GTTATTCCAGCTAAGCCACCC 58.701 52.381 0.00 0.00 0.00 4.61
5517 5990 2.999331 TGTTATTCCAGCTAAGCCACC 58.001 47.619 0.00 0.00 0.00 4.61
5518 5991 4.199310 TCATGTTATTCCAGCTAAGCCAC 58.801 43.478 0.00 0.00 0.00 5.01
5519 5992 4.502105 TCATGTTATTCCAGCTAAGCCA 57.498 40.909 0.00 0.00 0.00 4.75
5520 5993 5.278660 CCAATCATGTTATTCCAGCTAAGCC 60.279 44.000 0.00 0.00 0.00 4.35
5521 5994 5.278660 CCCAATCATGTTATTCCAGCTAAGC 60.279 44.000 0.00 0.00 0.00 3.09
5522 5995 6.064060 TCCCAATCATGTTATTCCAGCTAAG 58.936 40.000 0.00 0.00 0.00 2.18
5523 5996 6.012337 TCCCAATCATGTTATTCCAGCTAA 57.988 37.500 0.00 0.00 0.00 3.09
5524 5997 5.369404 TCTCCCAATCATGTTATTCCAGCTA 59.631 40.000 0.00 0.00 0.00 3.32
5525 5998 4.166725 TCTCCCAATCATGTTATTCCAGCT 59.833 41.667 0.00 0.00 0.00 4.24
5526 5999 4.464008 TCTCCCAATCATGTTATTCCAGC 58.536 43.478 0.00 0.00 0.00 4.85
5527 6000 7.592885 ATTTCTCCCAATCATGTTATTCCAG 57.407 36.000 0.00 0.00 0.00 3.86
5528 6001 9.135189 CTTATTTCTCCCAATCATGTTATTCCA 57.865 33.333 0.00 0.00 0.00 3.53
5529 6002 9.136323 ACTTATTTCTCCCAATCATGTTATTCC 57.864 33.333 0.00 0.00 0.00 3.01
5530 6003 9.956720 CACTTATTTCTCCCAATCATGTTATTC 57.043 33.333 0.00 0.00 0.00 1.75
5531 6004 9.479549 ACACTTATTTCTCCCAATCATGTTATT 57.520 29.630 0.00 0.00 0.00 1.40
5532 6005 8.906867 CACACTTATTTCTCCCAATCATGTTAT 58.093 33.333 0.00 0.00 0.00 1.89
5533 6006 8.106462 TCACACTTATTTCTCCCAATCATGTTA 58.894 33.333 0.00 0.00 0.00 2.41
5534 6007 6.947733 TCACACTTATTTCTCCCAATCATGTT 59.052 34.615 0.00 0.00 0.00 2.71
5535 6008 6.484288 TCACACTTATTTCTCCCAATCATGT 58.516 36.000 0.00 0.00 0.00 3.21
5536 6009 6.039047 CCTCACACTTATTTCTCCCAATCATG 59.961 42.308 0.00 0.00 0.00 3.07
5537 6010 6.125029 CCTCACACTTATTTCTCCCAATCAT 58.875 40.000 0.00 0.00 0.00 2.45
5538 6011 5.500234 CCTCACACTTATTTCTCCCAATCA 58.500 41.667 0.00 0.00 0.00 2.57
5539 6012 4.884164 CCCTCACACTTATTTCTCCCAATC 59.116 45.833 0.00 0.00 0.00 2.67
5540 6013 4.325344 CCCCTCACACTTATTTCTCCCAAT 60.325 45.833 0.00 0.00 0.00 3.16
5541 6014 3.010138 CCCCTCACACTTATTTCTCCCAA 59.990 47.826 0.00 0.00 0.00 4.12
5542 6015 2.576191 CCCCTCACACTTATTTCTCCCA 59.424 50.000 0.00 0.00 0.00 4.37
5543 6016 2.684038 GCCCCTCACACTTATTTCTCCC 60.684 54.545 0.00 0.00 0.00 4.30
5544 6017 2.644676 GCCCCTCACACTTATTTCTCC 58.355 52.381 0.00 0.00 0.00 3.71
5545 6018 2.644676 GGCCCCTCACACTTATTTCTC 58.355 52.381 0.00 0.00 0.00 2.87
5546 6019 1.285078 GGGCCCCTCACACTTATTTCT 59.715 52.381 12.23 0.00 0.00 2.52
5547 6020 1.685180 GGGGCCCCTCACACTTATTTC 60.685 57.143 35.49 0.42 0.00 2.17
5548 6021 0.335019 GGGGCCCCTCACACTTATTT 59.665 55.000 35.49 0.00 0.00 1.40
5549 6022 0.849094 TGGGGCCCCTCACACTTATT 60.849 55.000 40.66 0.00 36.94 1.40
5550 6023 1.230149 TGGGGCCCCTCACACTTAT 60.230 57.895 40.66 0.00 36.94 1.73
5551 6024 2.208640 TGGGGCCCCTCACACTTA 59.791 61.111 40.66 16.48 36.94 2.24
5552 6025 3.580319 GTGGGGCCCCTCACACTT 61.580 66.667 40.66 0.00 36.94 3.16
5553 6026 4.918360 TGTGGGGCCCCTCACACT 62.918 66.667 40.66 0.00 38.75 3.55
5843 6316 0.322322 AACGCCCTGACAAATACGGA 59.678 50.000 0.00 0.00 0.00 4.69
5844 6317 1.161843 AAACGCCCTGACAAATACGG 58.838 50.000 0.00 0.00 0.00 4.02
5845 6318 3.255725 TCTAAACGCCCTGACAAATACG 58.744 45.455 0.00 0.00 0.00 3.06
5846 6319 5.813080 ATTCTAAACGCCCTGACAAATAC 57.187 39.130 0.00 0.00 0.00 1.89
5847 6320 6.827586 AAATTCTAAACGCCCTGACAAATA 57.172 33.333 0.00 0.00 0.00 1.40
5848 6321 5.722021 AAATTCTAAACGCCCTGACAAAT 57.278 34.783 0.00 0.00 0.00 2.32
5849 6322 5.523438 AAAATTCTAAACGCCCTGACAAA 57.477 34.783 0.00 0.00 0.00 2.83
5850 6323 4.319911 CGAAAATTCTAAACGCCCTGACAA 60.320 41.667 0.00 0.00 0.00 3.18
5851 6324 3.187637 CGAAAATTCTAAACGCCCTGACA 59.812 43.478 0.00 0.00 0.00 3.58
5852 6325 3.743886 CGAAAATTCTAAACGCCCTGAC 58.256 45.455 0.00 0.00 0.00 3.51
5853 6326 2.160813 GCGAAAATTCTAAACGCCCTGA 59.839 45.455 0.00 0.00 42.79 3.86
5854 6327 2.515912 GCGAAAATTCTAAACGCCCTG 58.484 47.619 0.00 0.00 42.79 4.45
5855 6328 2.913777 GCGAAAATTCTAAACGCCCT 57.086 45.000 0.00 0.00 42.79 5.19
5859 6332 9.537848 AACATAACTAAGCGAAAATTCTAAACG 57.462 29.630 0.00 0.00 0.00 3.60
5864 6337 9.180678 CAAACAACATAACTAAGCGAAAATTCT 57.819 29.630 0.00 0.00 0.00 2.40
5865 6338 9.176181 TCAAACAACATAACTAAGCGAAAATTC 57.824 29.630 0.00 0.00 0.00 2.17
5866 6339 9.691362 ATCAAACAACATAACTAAGCGAAAATT 57.309 25.926 0.00 0.00 0.00 1.82
5867 6340 9.691362 AATCAAACAACATAACTAAGCGAAAAT 57.309 25.926 0.00 0.00 0.00 1.82
5868 6341 9.176181 GAATCAAACAACATAACTAAGCGAAAA 57.824 29.630 0.00 0.00 0.00 2.29
5869 6342 8.346300 TGAATCAAACAACATAACTAAGCGAAA 58.654 29.630 0.00 0.00 0.00 3.46
5870 6343 7.866729 TGAATCAAACAACATAACTAAGCGAA 58.133 30.769 0.00 0.00 0.00 4.70
5871 6344 7.428282 TGAATCAAACAACATAACTAAGCGA 57.572 32.000 0.00 0.00 0.00 4.93
5872 6345 8.177663 AGATGAATCAAACAACATAACTAAGCG 58.822 33.333 0.00 0.00 0.00 4.68
5876 6349 9.890629 AGCTAGATGAATCAAACAACATAACTA 57.109 29.630 0.00 0.00 0.00 2.24
5877 6350 8.671921 CAGCTAGATGAATCAAACAACATAACT 58.328 33.333 0.40 0.00 0.00 2.24
5878 6351 7.430502 GCAGCTAGATGAATCAAACAACATAAC 59.569 37.037 13.26 0.00 0.00 1.89
5879 6352 7.121020 TGCAGCTAGATGAATCAAACAACATAA 59.879 33.333 13.26 0.00 0.00 1.90
5880 6353 6.598850 TGCAGCTAGATGAATCAAACAACATA 59.401 34.615 13.26 0.00 0.00 2.29
5881 6354 5.416639 TGCAGCTAGATGAATCAAACAACAT 59.583 36.000 13.26 0.00 0.00 2.71
5882 6355 4.761227 TGCAGCTAGATGAATCAAACAACA 59.239 37.500 13.26 0.00 0.00 3.33
5883 6356 5.300969 TGCAGCTAGATGAATCAAACAAC 57.699 39.130 13.26 0.00 0.00 3.32
5884 6357 7.812690 ATATGCAGCTAGATGAATCAAACAA 57.187 32.000 13.26 0.00 0.00 2.83
5921 6394 2.124411 GAGCTAACACCCCTTCCCATA 58.876 52.381 0.00 0.00 0.00 2.74
5972 6445 7.109006 AGCTGAGCAAATTTGATTTAAAACG 57.891 32.000 22.31 2.08 0.00 3.60
6018 6491 5.997746 AGCATAGCAAATATGTCCGTATGTT 59.002 36.000 0.00 0.00 42.89 2.71
6019 6492 5.551233 AGCATAGCAAATATGTCCGTATGT 58.449 37.500 0.00 0.00 42.89 2.29
6020 6493 6.486253 AAGCATAGCAAATATGTCCGTATG 57.514 37.500 0.00 0.00 42.89 2.39
6021 6494 7.158697 TGTAAGCATAGCAAATATGTCCGTAT 58.841 34.615 0.00 0.00 42.89 3.06
6022 6495 6.517605 TGTAAGCATAGCAAATATGTCCGTA 58.482 36.000 0.00 0.00 42.89 4.02
6023 6496 5.364778 TGTAAGCATAGCAAATATGTCCGT 58.635 37.500 0.00 0.00 42.89 4.69
6024 6497 5.922739 TGTAAGCATAGCAAATATGTCCG 57.077 39.130 0.00 0.00 42.89 4.79
6063 6536 6.032956 TGTACTACCTACAATTGGTGTCTG 57.967 41.667 10.83 3.72 41.98 3.51
6064 6537 5.778750 ACTGTACTACCTACAATTGGTGTCT 59.221 40.000 10.83 0.00 41.98 3.41
6080 6553 7.526192 CGGGGACTATAAGCTAGTACTGTACTA 60.526 44.444 22.54 22.54 40.14 1.82
6083 6556 5.555017 CGGGGACTATAAGCTAGTACTGTA 58.445 45.833 5.39 0.00 0.00 2.74
6084 6557 4.396522 CGGGGACTATAAGCTAGTACTGT 58.603 47.826 5.39 0.00 0.00 3.55
6085 6558 3.190953 GCGGGGACTATAAGCTAGTACTG 59.809 52.174 5.39 0.00 0.00 2.74
6086 6559 3.419943 GCGGGGACTATAAGCTAGTACT 58.580 50.000 0.00 0.00 0.00 2.73
6087 6560 2.161211 CGCGGGGACTATAAGCTAGTAC 59.839 54.545 0.00 0.00 0.00 2.73
6088 6561 2.038952 TCGCGGGGACTATAAGCTAGTA 59.961 50.000 6.13 0.00 0.00 1.82
6089 6562 1.202855 TCGCGGGGACTATAAGCTAGT 60.203 52.381 6.13 0.00 0.00 2.57
6090 6563 1.531423 TCGCGGGGACTATAAGCTAG 58.469 55.000 6.13 0.00 0.00 3.42
6091 6564 1.985473 TTCGCGGGGACTATAAGCTA 58.015 50.000 6.13 0.00 0.00 3.32
6092 6565 1.117150 TTTCGCGGGGACTATAAGCT 58.883 50.000 6.13 0.00 0.00 3.74
6093 6566 1.944032 TTTTCGCGGGGACTATAAGC 58.056 50.000 6.13 0.00 0.00 3.09
6125 6598 9.439500 CGTCCTTCTCTAATACTATAAGCTAGT 57.561 37.037 0.00 0.00 0.00 2.57
6126 6599 8.392612 GCGTCCTTCTCTAATACTATAAGCTAG 58.607 40.741 0.00 0.00 0.00 3.42
6127 6600 7.064371 CGCGTCCTTCTCTAATACTATAAGCTA 59.936 40.741 0.00 0.00 0.00 3.32
6128 6601 6.128227 CGCGTCCTTCTCTAATACTATAAGCT 60.128 42.308 0.00 0.00 0.00 3.74
6129 6602 6.022821 CGCGTCCTTCTCTAATACTATAAGC 58.977 44.000 0.00 0.00 0.00 3.09
6130 6603 7.118101 AGTCGCGTCCTTCTCTAATACTATAAG 59.882 40.741 5.77 0.00 0.00 1.73
6131 6604 6.933521 AGTCGCGTCCTTCTCTAATACTATAA 59.066 38.462 5.77 0.00 0.00 0.98
6132 6605 6.462500 AGTCGCGTCCTTCTCTAATACTATA 58.538 40.000 5.77 0.00 0.00 1.31
6133 6606 5.307204 AGTCGCGTCCTTCTCTAATACTAT 58.693 41.667 5.77 0.00 0.00 2.12
6134 6607 4.701765 AGTCGCGTCCTTCTCTAATACTA 58.298 43.478 5.77 0.00 0.00 1.82
6135 6608 3.543665 AGTCGCGTCCTTCTCTAATACT 58.456 45.455 5.77 0.00 0.00 2.12
6136 6609 3.967203 AGTCGCGTCCTTCTCTAATAC 57.033 47.619 5.77 0.00 0.00 1.89
6137 6610 4.025396 CGTTAGTCGCGTCCTTCTCTAATA 60.025 45.833 5.77 0.00 0.00 0.98
6138 6611 3.242673 CGTTAGTCGCGTCCTTCTCTAAT 60.243 47.826 5.77 0.00 0.00 1.73
6139 6612 2.094894 CGTTAGTCGCGTCCTTCTCTAA 59.905 50.000 5.77 2.91 0.00 2.10
6140 6613 1.662629 CGTTAGTCGCGTCCTTCTCTA 59.337 52.381 5.77 0.00 0.00 2.43
6141 6614 0.447011 CGTTAGTCGCGTCCTTCTCT 59.553 55.000 5.77 0.00 0.00 3.10
6142 6615 0.167689 ACGTTAGTCGCGTCCTTCTC 59.832 55.000 5.77 0.00 44.19 2.87
6143 6616 2.251600 ACGTTAGTCGCGTCCTTCT 58.748 52.632 5.77 1.03 44.19 2.85
6144 6617 4.855596 ACGTTAGTCGCGTCCTTC 57.144 55.556 5.77 0.40 44.19 3.46
6153 6626 1.596464 CCGCACGATAGGACGTTAGTC 60.596 57.143 0.00 0.00 44.76 2.59
6154 6627 0.379669 CCGCACGATAGGACGTTAGT 59.620 55.000 0.00 0.00 44.76 2.24
6155 6628 0.379669 ACCGCACGATAGGACGTTAG 59.620 55.000 0.00 0.00 44.76 2.34
6156 6629 0.378257 GACCGCACGATAGGACGTTA 59.622 55.000 0.00 0.00 44.76 3.18
6157 6630 1.138247 GACCGCACGATAGGACGTT 59.862 57.895 0.00 0.00 44.76 3.99
6159 6632 0.179145 AAAGACCGCACGATAGGACG 60.179 55.000 0.00 0.00 43.77 4.79
6160 6633 2.098770 ACTAAAGACCGCACGATAGGAC 59.901 50.000 0.00 0.00 43.77 3.85
6161 6634 2.372264 ACTAAAGACCGCACGATAGGA 58.628 47.619 0.00 0.00 43.77 2.94
6162 6635 2.865343 ACTAAAGACCGCACGATAGG 57.135 50.000 0.00 0.00 43.77 2.57
6163 6636 4.665212 TGTTACTAAAGACCGCACGATAG 58.335 43.478 0.00 0.00 46.19 2.08
6164 6637 4.395854 TCTGTTACTAAAGACCGCACGATA 59.604 41.667 0.00 0.00 0.00 2.92
6165 6638 3.192001 TCTGTTACTAAAGACCGCACGAT 59.808 43.478 0.00 0.00 0.00 3.73
6166 6639 2.553602 TCTGTTACTAAAGACCGCACGA 59.446 45.455 0.00 0.00 0.00 4.35
6167 6640 2.937591 TCTGTTACTAAAGACCGCACG 58.062 47.619 0.00 0.00 0.00 5.34
6168 6641 3.864003 GGATCTGTTACTAAAGACCGCAC 59.136 47.826 0.00 0.00 0.00 5.34
6169 6642 3.428452 CGGATCTGTTACTAAAGACCGCA 60.428 47.826 0.00 0.00 33.55 5.69
6170 6643 3.114065 CGGATCTGTTACTAAAGACCGC 58.886 50.000 0.00 0.00 33.55 5.68
6171 6644 3.114065 GCGGATCTGTTACTAAAGACCG 58.886 50.000 2.89 0.00 38.75 4.79
6172 6645 3.864003 GTGCGGATCTGTTACTAAAGACC 59.136 47.826 2.89 0.00 0.00 3.85
6173 6646 3.546670 CGTGCGGATCTGTTACTAAAGAC 59.453 47.826 2.89 0.00 0.00 3.01
6174 6647 3.441222 TCGTGCGGATCTGTTACTAAAGA 59.559 43.478 2.89 0.00 0.00 2.52
6175 6648 3.766151 TCGTGCGGATCTGTTACTAAAG 58.234 45.455 2.89 0.00 0.00 1.85
6176 6649 3.853831 TCGTGCGGATCTGTTACTAAA 57.146 42.857 2.89 0.00 0.00 1.85
6177 6650 4.357142 GAATCGTGCGGATCTGTTACTAA 58.643 43.478 2.89 0.00 33.02 2.24
6178 6651 3.243301 GGAATCGTGCGGATCTGTTACTA 60.243 47.826 2.89 0.00 33.02 1.82
6179 6652 2.481449 GGAATCGTGCGGATCTGTTACT 60.481 50.000 2.89 0.00 33.02 2.24
6180 6653 1.859080 GGAATCGTGCGGATCTGTTAC 59.141 52.381 2.89 2.45 33.02 2.50
6181 6654 1.478916 TGGAATCGTGCGGATCTGTTA 59.521 47.619 2.89 0.00 33.02 2.41
6182 6655 0.249120 TGGAATCGTGCGGATCTGTT 59.751 50.000 2.89 0.00 33.02 3.16
6183 6656 0.249120 TTGGAATCGTGCGGATCTGT 59.751 50.000 2.89 0.00 33.02 3.41
6184 6657 1.586422 ATTGGAATCGTGCGGATCTG 58.414 50.000 0.00 0.00 33.02 2.90
6185 6658 3.685139 ATATTGGAATCGTGCGGATCT 57.315 42.857 0.00 0.00 33.02 2.75
6186 6659 4.213270 TGAAATATTGGAATCGTGCGGATC 59.787 41.667 0.00 0.00 33.02 3.36
6187 6660 4.133820 TGAAATATTGGAATCGTGCGGAT 58.866 39.130 0.00 0.00 36.78 4.18
6188 6661 3.536570 TGAAATATTGGAATCGTGCGGA 58.463 40.909 0.00 0.00 0.00 5.54
6189 6662 3.961477 TGAAATATTGGAATCGTGCGG 57.039 42.857 0.00 0.00 0.00 5.69
6190 6663 4.084589 TCGATGAAATATTGGAATCGTGCG 60.085 41.667 19.12 8.71 40.65 5.34
6191 6664 5.342806 TCGATGAAATATTGGAATCGTGC 57.657 39.130 19.12 0.00 40.65 5.34
6192 6665 7.330454 AGAGATCGATGAAATATTGGAATCGTG 59.670 37.037 19.12 2.78 40.65 4.35
6193 6666 7.382110 AGAGATCGATGAAATATTGGAATCGT 58.618 34.615 19.12 11.54 40.65 3.73
6194 6667 7.758980 AGAGAGATCGATGAAATATTGGAATCG 59.241 37.037 0.54 16.02 41.04 3.34
6195 6668 9.086336 GAGAGAGATCGATGAAATATTGGAATC 57.914 37.037 0.54 0.00 0.00 2.52
6196 6669 7.758980 CGAGAGAGATCGATGAAATATTGGAAT 59.241 37.037 0.54 0.00 45.56 3.01
6197 6670 7.087007 CGAGAGAGATCGATGAAATATTGGAA 58.913 38.462 0.54 0.00 45.56 3.53
6198 6671 6.207614 ACGAGAGAGATCGATGAAATATTGGA 59.792 38.462 0.54 0.00 45.56 3.53
6199 6672 6.385843 ACGAGAGAGATCGATGAAATATTGG 58.614 40.000 0.54 0.00 45.56 3.16
6200 6673 7.865875 AACGAGAGAGATCGATGAAATATTG 57.134 36.000 0.54 0.00 45.56 1.90
6201 6674 9.619316 CTAAACGAGAGAGATCGATGAAATATT 57.381 33.333 0.54 0.00 45.56 1.28
6202 6675 9.004717 TCTAAACGAGAGAGATCGATGAAATAT 57.995 33.333 0.54 0.00 45.56 1.28
6203 6676 8.379457 TCTAAACGAGAGAGATCGATGAAATA 57.621 34.615 0.54 0.00 45.56 1.40
6204 6677 7.265647 TCTAAACGAGAGAGATCGATGAAAT 57.734 36.000 0.54 0.00 45.56 2.17
6205 6678 6.679327 TCTAAACGAGAGAGATCGATGAAA 57.321 37.500 0.54 0.00 45.56 2.69
6206 6679 6.539103 TCTTCTAAACGAGAGAGATCGATGAA 59.461 38.462 0.54 0.00 45.56 2.57
6207 6680 6.018588 GTCTTCTAAACGAGAGAGATCGATGA 60.019 42.308 0.54 0.00 45.56 2.92
6208 6681 6.133392 GTCTTCTAAACGAGAGAGATCGATG 58.867 44.000 0.54 0.00 45.56 3.84
6209 6682 5.237779 GGTCTTCTAAACGAGAGAGATCGAT 59.762 44.000 0.00 0.00 45.56 3.59
6210 6683 4.571580 GGTCTTCTAAACGAGAGAGATCGA 59.428 45.833 2.78 0.00 45.56 3.59
6211 6684 7.398494 AGAGGTCTTCTAAACGAGAGAGATCG 61.398 46.154 0.00 0.00 40.58 3.69
6212 6685 5.820947 AGAGGTCTTCTAAACGAGAGAGATC 59.179 44.000 0.00 0.00 34.93 2.75
6213 6686 5.751586 AGAGGTCTTCTAAACGAGAGAGAT 58.248 41.667 0.00 0.00 34.93 2.75
6214 6687 5.168647 AGAGGTCTTCTAAACGAGAGAGA 57.831 43.478 0.00 0.00 34.93 3.10
6215 6688 5.890424 AAGAGGTCTTCTAAACGAGAGAG 57.110 43.478 0.00 0.00 34.14 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.