Multiple sequence alignment - TraesCS4A01G193800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G193800 chr4A 100.000 2802 0 0 1 2802 475580921 475578120 0.000000e+00 5175
1 TraesCS4A01G193800 chr4A 97.475 713 17 1 2090 2802 475555838 475555127 0.000000e+00 1216
2 TraesCS4A01G193800 chr4A 96.774 713 22 1 2090 2802 218941896 218941185 0.000000e+00 1188
3 TraesCS4A01G193800 chr4A 95.955 717 27 2 2086 2802 433359859 433360573 0.000000e+00 1162
4 TraesCS4A01G193800 chr4A 75.340 588 107 25 1514 2092 402926644 402927202 5.990000e-62 248
5 TraesCS4A01G193800 chr4A 82.721 272 22 14 1812 2082 440590888 440591135 4.700000e-53 219
6 TraesCS4A01G193800 chr6A 96.252 1601 58 2 491 2090 353340983 353339384 0.000000e+00 2623
7 TraesCS4A01G193800 chr6A 95.878 1601 65 1 491 2090 353348891 353347291 0.000000e+00 2590
8 TraesCS4A01G193800 chr6A 96.348 712 24 2 2086 2797 492053688 492054397 0.000000e+00 1170
9 TraesCS4A01G193800 chr1A 94.978 1613 71 4 486 2091 168235436 168237045 0.000000e+00 2521
10 TraesCS4A01G193800 chr1A 94.700 1566 65 14 489 2049 469357291 469355739 0.000000e+00 2416
11 TraesCS4A01G193800 chr1A 96.213 713 25 2 2090 2802 276236259 276236969 0.000000e+00 1166
12 TraesCS4A01G193800 chr1A 92.551 443 28 4 15 456 56344238 56344676 5.090000e-177 630
13 TraesCS4A01G193800 chr1A 91.860 430 30 4 15 443 56352160 56352585 1.860000e-166 595
14 TraesCS4A01G193800 chr3A 93.773 1606 84 12 489 2090 279045307 279043714 0.000000e+00 2398
15 TraesCS4A01G193800 chr3A 95.072 1522 60 12 489 2008 279037410 279035902 0.000000e+00 2381
16 TraesCS4A01G193800 chr3A 94.359 1560 71 13 495 2049 271847762 271846215 0.000000e+00 2377
17 TraesCS4A01G193800 chr3A 92.525 1592 99 16 502 2082 254256926 254255344 0.000000e+00 2263
18 TraesCS4A01G193800 chr3A 93.610 1471 84 8 502 1967 254286271 254284806 0.000000e+00 2187
19 TraesCS4A01G193800 chr3A 92.325 443 29 4 15 456 433896533 433896971 2.370000e-175 625
20 TraesCS4A01G193800 chr3A 92.325 443 28 5 15 456 433914097 433914534 2.370000e-175 625
21 TraesCS4A01G193800 chr3A 87.052 502 50 12 1 496 172045101 172045593 1.130000e-153 553
22 TraesCS4A01G193800 chr3A 86.706 504 56 8 1 500 177959466 177959962 1.470000e-152 549
23 TraesCS4A01G193800 chr3A 86.706 504 55 9 1 500 273099886 273100381 1.470000e-152 549
24 TraesCS4A01G193800 chr2A 96.494 713 22 3 2090 2802 493704516 493705225 0.000000e+00 1175
25 TraesCS4A01G193800 chr2A 96.353 713 23 3 2090 2802 493712758 493713467 0.000000e+00 1170
26 TraesCS4A01G193800 chr2A 92.255 439 28 5 15 451 145049508 145049074 3.970000e-173 617
27 TraesCS4A01G193800 chr2A 78.119 521 83 25 1588 2098 580606386 580605887 4.540000e-78 302
28 TraesCS4A01G193800 chr2A 80.926 367 52 13 1730 2090 199512901 199513255 9.890000e-70 274
29 TraesCS4A01G193800 chr2A 86.813 182 22 2 1902 2082 449876265 449876085 4.730000e-48 202
30 TraesCS4A01G193800 chr2A 79.231 260 36 13 1843 2090 162429997 162429744 6.210000e-37 165
31 TraesCS4A01G193800 chr5A 96.213 713 27 0 2090 2802 676027528 676028240 0.000000e+00 1168
32 TraesCS4A01G193800 chr7A 96.213 713 26 1 2090 2802 51486609 51487320 0.000000e+00 1166
33 TraesCS4A01G193800 chr7A 94.045 487 27 2 16 501 446739154 446738669 0.000000e+00 737


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G193800 chr4A 475578120 475580921 2801 True 5175 5175 100.000 1 2802 1 chr4A.!!$R3 2801
1 TraesCS4A01G193800 chr4A 475555127 475555838 711 True 1216 1216 97.475 2090 2802 1 chr4A.!!$R2 712
2 TraesCS4A01G193800 chr4A 218941185 218941896 711 True 1188 1188 96.774 2090 2802 1 chr4A.!!$R1 712
3 TraesCS4A01G193800 chr4A 433359859 433360573 714 False 1162 1162 95.955 2086 2802 1 chr4A.!!$F2 716
4 TraesCS4A01G193800 chr4A 402926644 402927202 558 False 248 248 75.340 1514 2092 1 chr4A.!!$F1 578
5 TraesCS4A01G193800 chr6A 353339384 353340983 1599 True 2623 2623 96.252 491 2090 1 chr6A.!!$R1 1599
6 TraesCS4A01G193800 chr6A 353347291 353348891 1600 True 2590 2590 95.878 491 2090 1 chr6A.!!$R2 1599
7 TraesCS4A01G193800 chr6A 492053688 492054397 709 False 1170 1170 96.348 2086 2797 1 chr6A.!!$F1 711
8 TraesCS4A01G193800 chr1A 168235436 168237045 1609 False 2521 2521 94.978 486 2091 1 chr1A.!!$F3 1605
9 TraesCS4A01G193800 chr1A 469355739 469357291 1552 True 2416 2416 94.700 489 2049 1 chr1A.!!$R1 1560
10 TraesCS4A01G193800 chr1A 276236259 276236969 710 False 1166 1166 96.213 2090 2802 1 chr1A.!!$F4 712
11 TraesCS4A01G193800 chr3A 279043714 279045307 1593 True 2398 2398 93.773 489 2090 1 chr3A.!!$R5 1601
12 TraesCS4A01G193800 chr3A 279035902 279037410 1508 True 2381 2381 95.072 489 2008 1 chr3A.!!$R4 1519
13 TraesCS4A01G193800 chr3A 271846215 271847762 1547 True 2377 2377 94.359 495 2049 1 chr3A.!!$R3 1554
14 TraesCS4A01G193800 chr3A 254255344 254256926 1582 True 2263 2263 92.525 502 2082 1 chr3A.!!$R1 1580
15 TraesCS4A01G193800 chr3A 254284806 254286271 1465 True 2187 2187 93.610 502 1967 1 chr3A.!!$R2 1465
16 TraesCS4A01G193800 chr2A 493704516 493705225 709 False 1175 1175 96.494 2090 2802 1 chr2A.!!$F2 712
17 TraesCS4A01G193800 chr2A 493712758 493713467 709 False 1170 1170 96.353 2090 2802 1 chr2A.!!$F3 712
18 TraesCS4A01G193800 chr5A 676027528 676028240 712 False 1168 1168 96.213 2090 2802 1 chr5A.!!$F1 712
19 TraesCS4A01G193800 chr7A 51486609 51487320 711 False 1166 1166 96.213 2090 2802 1 chr7A.!!$F1 712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.038983 AATAAAAACGGTGCCACGGC 60.039 50.0 0.0 0.0 42.35 5.68 F
343 344 0.111061 TGCAGACAAAGGGTGCATCT 59.889 50.0 0.0 0.0 42.20 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1305 1310 0.119155 ACCCCAATCTCTCACTCCCA 59.881 55.000 0.00 0.00 0.00 4.37 R
2082 2121 1.208052 CTGTCCCCATAGGTGTGACAG 59.792 57.143 10.93 10.93 42.12 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 9.911138 ATTTAAATGTTATTATCATGATGCGCA 57.089 25.926 14.96 14.96 0.00 6.09
58 59 9.911138 TTTAAATGTTATTATCATGATGCGCAT 57.089 25.926 25.66 25.66 37.85 4.73
67 68 2.768833 ATGATGCGCATGACATGAAC 57.231 45.000 30.76 11.23 35.42 3.18
68 69 1.451067 TGATGCGCATGACATGAACA 58.549 45.000 30.76 14.03 0.00 3.18
69 70 1.811359 TGATGCGCATGACATGAACAA 59.189 42.857 30.76 1.60 0.00 2.83
70 71 2.159490 TGATGCGCATGACATGAACAAG 60.159 45.455 30.76 5.46 0.00 3.16
71 72 1.237533 TGCGCATGACATGAACAAGT 58.762 45.000 19.76 0.00 0.00 3.16
72 73 1.608109 TGCGCATGACATGAACAAGTT 59.392 42.857 19.76 0.00 0.00 2.66
73 74 2.034432 TGCGCATGACATGAACAAGTTT 59.966 40.909 19.76 0.00 0.00 2.66
74 75 3.251972 TGCGCATGACATGAACAAGTTTA 59.748 39.130 19.76 0.00 0.00 2.01
75 76 4.082841 TGCGCATGACATGAACAAGTTTAT 60.083 37.500 19.76 0.00 0.00 1.40
76 77 4.263677 GCGCATGACATGAACAAGTTTATG 59.736 41.667 19.76 13.98 40.88 1.90
77 78 4.263677 CGCATGACATGAACAAGTTTATGC 59.736 41.667 19.76 15.85 39.34 3.14
78 79 5.162794 GCATGACATGAACAAGTTTATGCA 58.837 37.500 19.76 13.90 39.34 3.96
79 80 5.634439 GCATGACATGAACAAGTTTATGCAA 59.366 36.000 19.76 6.53 39.34 4.08
80 81 6.311935 GCATGACATGAACAAGTTTATGCAAT 59.688 34.615 19.76 8.15 39.34 3.56
81 82 7.148540 GCATGACATGAACAAGTTTATGCAATT 60.149 33.333 19.76 0.00 39.34 2.32
82 83 9.356433 CATGACATGAACAAGTTTATGCAATTA 57.644 29.630 10.03 1.83 39.34 1.40
84 85 9.926158 TGACATGAACAAGTTTATGCAATTATT 57.074 25.926 15.10 0.00 39.34 1.40
116 117 7.701445 AGTTGACAAGAGCATTATTATGAAGC 58.299 34.615 0.00 0.00 33.37 3.86
117 118 7.337689 AGTTGACAAGAGCATTATTATGAAGCA 59.662 33.333 0.00 0.00 33.37 3.91
118 119 7.812690 TGACAAGAGCATTATTATGAAGCAT 57.187 32.000 0.00 0.00 33.37 3.79
119 120 8.229253 TGACAAGAGCATTATTATGAAGCATT 57.771 30.769 0.00 0.00 33.37 3.56
120 121 8.689061 TGACAAGAGCATTATTATGAAGCATTT 58.311 29.630 0.00 0.00 33.37 2.32
121 122 8.867112 ACAAGAGCATTATTATGAAGCATTTG 57.133 30.769 0.00 0.00 33.37 2.32
122 123 8.689061 ACAAGAGCATTATTATGAAGCATTTGA 58.311 29.630 0.00 0.00 33.37 2.69
123 124 8.965172 CAAGAGCATTATTATGAAGCATTTGAC 58.035 33.333 0.00 0.00 33.37 3.18
124 125 8.229253 AGAGCATTATTATGAAGCATTTGACA 57.771 30.769 0.00 0.00 33.37 3.58
125 126 8.857098 AGAGCATTATTATGAAGCATTTGACAT 58.143 29.630 0.00 0.00 33.37 3.06
126 127 9.125906 GAGCATTATTATGAAGCATTTGACATC 57.874 33.333 0.00 0.00 33.37 3.06
127 128 7.806487 AGCATTATTATGAAGCATTTGACATCG 59.194 33.333 0.00 0.00 33.37 3.84
128 129 7.592533 GCATTATTATGAAGCATTTGACATCGT 59.407 33.333 0.00 0.00 33.37 3.73
129 130 8.898792 CATTATTATGAAGCATTTGACATCGTG 58.101 33.333 0.00 0.00 33.37 4.35
130 131 3.770263 ATGAAGCATTTGACATCGTGG 57.230 42.857 0.00 0.00 0.00 4.94
131 132 1.199789 TGAAGCATTTGACATCGTGGC 59.800 47.619 0.00 0.00 0.00 5.01
132 133 0.168788 AAGCATTTGACATCGTGGCG 59.831 50.000 0.00 0.00 0.00 5.69
133 134 1.226379 GCATTTGACATCGTGGCGG 60.226 57.895 0.00 0.00 0.00 6.13
134 135 1.643868 GCATTTGACATCGTGGCGGA 61.644 55.000 0.00 0.00 0.00 5.54
135 136 0.801872 CATTTGACATCGTGGCGGAA 59.198 50.000 0.00 0.00 0.00 4.30
136 137 1.198867 CATTTGACATCGTGGCGGAAA 59.801 47.619 0.00 0.00 0.00 3.13
137 138 0.589223 TTTGACATCGTGGCGGAAAC 59.411 50.000 0.00 0.00 0.00 2.78
138 139 0.533085 TTGACATCGTGGCGGAAACA 60.533 50.000 0.00 0.00 0.00 2.83
139 140 0.533085 TGACATCGTGGCGGAAACAA 60.533 50.000 0.00 0.00 0.00 2.83
140 141 0.589223 GACATCGTGGCGGAAACAAA 59.411 50.000 0.00 0.00 0.00 2.83
141 142 1.002251 GACATCGTGGCGGAAACAAAA 60.002 47.619 0.00 0.00 0.00 2.44
142 143 1.001815 ACATCGTGGCGGAAACAAAAG 60.002 47.619 0.00 0.00 0.00 2.27
143 144 0.596082 ATCGTGGCGGAAACAAAAGG 59.404 50.000 0.00 0.00 0.00 3.11
144 145 1.007849 CGTGGCGGAAACAAAAGGG 60.008 57.895 0.00 0.00 0.00 3.95
145 146 1.365999 GTGGCGGAAACAAAAGGGG 59.634 57.895 0.00 0.00 0.00 4.79
146 147 2.342279 GGCGGAAACAAAAGGGGC 59.658 61.111 0.00 0.00 0.00 5.80
147 148 2.049526 GCGGAAACAAAAGGGGCG 60.050 61.111 0.00 0.00 0.00 6.13
148 149 2.049526 CGGAAACAAAAGGGGCGC 60.050 61.111 0.00 0.00 0.00 6.53
149 150 2.342279 GGAAACAAAAGGGGCGCC 59.658 61.111 21.18 21.18 0.00 6.53
150 151 2.503382 GGAAACAAAAGGGGCGCCA 61.503 57.895 30.85 0.00 0.00 5.69
151 152 1.300620 GAAACAAAAGGGGCGCCAC 60.301 57.895 30.85 28.13 0.00 5.01
152 153 3.145422 AAACAAAAGGGGCGCCACG 62.145 57.895 30.85 14.97 0.00 4.94
176 177 4.724303 CAACGATAATAAAAACGGTGCCA 58.276 39.130 0.00 0.00 36.71 4.92
177 178 4.345271 ACGATAATAAAAACGGTGCCAC 57.655 40.909 0.00 0.00 0.00 5.01
178 179 3.181518 ACGATAATAAAAACGGTGCCACG 60.182 43.478 0.00 0.00 40.31 4.94
179 180 3.687200 GATAATAAAAACGGTGCCACGG 58.313 45.455 0.27 0.27 38.39 4.94
180 181 0.038983 AATAAAAACGGTGCCACGGC 60.039 50.000 0.00 0.00 42.35 5.68
191 192 4.988598 CCACGGCAGCGTTCCAGT 62.989 66.667 0.00 0.00 0.00 4.00
192 193 2.972505 CACGGCAGCGTTCCAGTT 60.973 61.111 0.00 0.00 0.00 3.16
193 194 2.665185 ACGGCAGCGTTCCAGTTC 60.665 61.111 0.00 0.00 0.00 3.01
194 195 3.423154 CGGCAGCGTTCCAGTTCC 61.423 66.667 0.00 0.00 0.00 3.62
195 196 3.423154 GGCAGCGTTCCAGTTCCG 61.423 66.667 0.00 0.00 0.00 4.30
196 197 3.423154 GCAGCGTTCCAGTTCCGG 61.423 66.667 0.00 0.00 0.00 5.14
197 198 2.030562 CAGCGTTCCAGTTCCGGT 59.969 61.111 0.00 0.00 0.00 5.28
198 199 1.290955 CAGCGTTCCAGTTCCGGTA 59.709 57.895 0.00 0.00 0.00 4.02
199 200 0.320073 CAGCGTTCCAGTTCCGGTAA 60.320 55.000 0.00 0.00 0.00 2.85
200 201 0.320160 AGCGTTCCAGTTCCGGTAAC 60.320 55.000 0.00 4.94 38.46 2.50
202 203 1.706443 CGTTCCAGTTCCGGTAACTC 58.294 55.000 14.09 5.25 45.64 3.01
203 204 1.706443 GTTCCAGTTCCGGTAACTCG 58.294 55.000 14.09 9.67 45.64 4.18
204 205 1.270550 GTTCCAGTTCCGGTAACTCGA 59.729 52.381 14.09 11.45 45.64 4.04
205 206 1.843368 TCCAGTTCCGGTAACTCGAT 58.157 50.000 14.09 0.00 45.64 3.59
206 207 2.173519 TCCAGTTCCGGTAACTCGATT 58.826 47.619 14.09 0.00 45.64 3.34
207 208 2.094390 TCCAGTTCCGGTAACTCGATTG 60.094 50.000 14.09 6.28 45.64 2.67
208 209 2.094390 CCAGTTCCGGTAACTCGATTGA 60.094 50.000 14.09 0.00 45.64 2.57
209 210 3.179830 CAGTTCCGGTAACTCGATTGAG 58.820 50.000 14.09 8.54 45.64 3.02
210 211 3.087031 AGTTCCGGTAACTCGATTGAGA 58.913 45.455 17.27 0.00 45.64 3.27
211 212 3.700038 AGTTCCGGTAACTCGATTGAGAT 59.300 43.478 17.27 7.49 45.64 2.75
212 213 4.885907 AGTTCCGGTAACTCGATTGAGATA 59.114 41.667 17.27 6.41 45.64 1.98
213 214 4.825546 TCCGGTAACTCGATTGAGATAC 57.174 45.455 17.27 17.67 45.57 2.24
219 220 3.290308 ACTCGATTGAGATACCGATGC 57.710 47.619 17.27 0.00 45.57 3.91
220 221 2.623416 ACTCGATTGAGATACCGATGCA 59.377 45.455 17.27 0.00 45.57 3.96
221 222 3.068165 ACTCGATTGAGATACCGATGCAA 59.932 43.478 17.27 0.00 45.57 4.08
222 223 4.051237 CTCGATTGAGATACCGATGCAAA 58.949 43.478 3.60 0.00 45.57 3.68
223 224 4.051237 TCGATTGAGATACCGATGCAAAG 58.949 43.478 0.00 0.00 0.00 2.77
224 225 3.185188 CGATTGAGATACCGATGCAAAGG 59.815 47.826 9.03 9.03 0.00 3.11
225 226 3.904800 TTGAGATACCGATGCAAAGGA 57.095 42.857 16.49 2.45 0.00 3.36
226 227 3.459232 TGAGATACCGATGCAAAGGAG 57.541 47.619 16.49 0.00 0.00 3.69
227 228 3.031013 TGAGATACCGATGCAAAGGAGA 58.969 45.455 16.49 5.48 0.00 3.71
228 229 3.450817 TGAGATACCGATGCAAAGGAGAA 59.549 43.478 16.49 3.50 0.00 2.87
229 230 4.054671 GAGATACCGATGCAAAGGAGAAG 58.945 47.826 16.49 0.00 0.00 2.85
230 231 3.452627 AGATACCGATGCAAAGGAGAAGT 59.547 43.478 16.49 0.00 0.00 3.01
231 232 1.813513 ACCGATGCAAAGGAGAAGTG 58.186 50.000 16.49 0.00 0.00 3.16
232 233 1.072331 ACCGATGCAAAGGAGAAGTGT 59.928 47.619 16.49 0.00 0.00 3.55
233 234 1.466167 CCGATGCAAAGGAGAAGTGTG 59.534 52.381 4.96 0.00 0.00 3.82
234 235 1.135859 CGATGCAAAGGAGAAGTGTGC 60.136 52.381 0.00 0.00 35.75 4.57
235 236 0.877071 ATGCAAAGGAGAAGTGTGCG 59.123 50.000 0.00 0.00 38.05 5.34
236 237 1.165907 TGCAAAGGAGAAGTGTGCGG 61.166 55.000 0.00 0.00 38.05 5.69
237 238 0.884704 GCAAAGGAGAAGTGTGCGGA 60.885 55.000 0.00 0.00 0.00 5.54
238 239 1.813513 CAAAGGAGAAGTGTGCGGAT 58.186 50.000 0.00 0.00 0.00 4.18
239 240 1.466167 CAAAGGAGAAGTGTGCGGATG 59.534 52.381 0.00 0.00 0.00 3.51
240 241 0.674895 AAGGAGAAGTGTGCGGATGC 60.675 55.000 0.00 0.00 43.20 3.91
264 265 2.758648 AAAAATGGTGGGGTGCTCC 58.241 52.632 0.00 0.00 0.00 4.70
282 283 3.395702 CGGATTCCGGGTGTCCCA 61.396 66.667 17.53 0.00 45.83 4.37
283 284 2.271173 GGATTCCGGGTGTCCCAC 59.729 66.667 0.00 0.00 45.83 4.61
284 285 2.125269 GATTCCGGGTGTCCCACG 60.125 66.667 0.00 0.00 45.83 4.94
285 286 3.675619 GATTCCGGGTGTCCCACGG 62.676 68.421 0.00 0.00 45.83 4.94
289 290 3.312718 CGGGTGTCCCACGGGTTA 61.313 66.667 1.07 0.00 45.83 2.85
290 291 2.666812 GGGTGTCCCACGGGTTAG 59.333 66.667 1.07 0.00 44.65 2.34
291 292 2.219164 GGGTGTCCCACGGGTTAGT 61.219 63.158 1.07 0.00 44.65 2.24
292 293 1.004200 GGTGTCCCACGGGTTAGTG 60.004 63.158 1.07 0.00 41.53 2.74
298 299 3.903783 CACGGGTTAGTGGCATGG 58.096 61.111 0.00 0.00 38.40 3.66
299 300 1.298340 CACGGGTTAGTGGCATGGA 59.702 57.895 0.00 0.00 38.40 3.41
300 301 0.322098 CACGGGTTAGTGGCATGGAA 60.322 55.000 0.00 0.00 38.40 3.53
301 302 0.402504 ACGGGTTAGTGGCATGGAAA 59.597 50.000 0.00 0.00 0.00 3.13
302 303 1.202952 ACGGGTTAGTGGCATGGAAAA 60.203 47.619 0.00 0.00 0.00 2.29
303 304 1.201414 CGGGTTAGTGGCATGGAAAAC 59.799 52.381 0.00 0.00 0.00 2.43
304 305 1.201414 GGGTTAGTGGCATGGAAAACG 59.799 52.381 0.00 0.00 0.00 3.60
305 306 2.156098 GGTTAGTGGCATGGAAAACGA 58.844 47.619 0.00 0.00 0.00 3.85
306 307 2.161609 GGTTAGTGGCATGGAAAACGAG 59.838 50.000 0.00 0.00 0.00 4.18
307 308 2.812011 GTTAGTGGCATGGAAAACGAGT 59.188 45.455 0.00 0.00 0.00 4.18
308 309 1.238439 AGTGGCATGGAAAACGAGTG 58.762 50.000 0.00 0.00 0.00 3.51
309 310 1.202758 AGTGGCATGGAAAACGAGTGA 60.203 47.619 0.00 0.00 0.00 3.41
310 311 1.069227 GTGGCATGGAAAACGAGTGAC 60.069 52.381 0.00 0.00 0.00 3.67
311 312 1.234821 GGCATGGAAAACGAGTGACA 58.765 50.000 0.00 0.00 0.00 3.58
312 313 1.606668 GGCATGGAAAACGAGTGACAA 59.393 47.619 0.00 0.00 0.00 3.18
313 314 2.228822 GGCATGGAAAACGAGTGACAAT 59.771 45.455 0.00 0.00 0.00 2.71
314 315 3.438781 GGCATGGAAAACGAGTGACAATA 59.561 43.478 0.00 0.00 0.00 1.90
315 316 4.096382 GGCATGGAAAACGAGTGACAATAT 59.904 41.667 0.00 0.00 0.00 1.28
316 317 5.030295 GCATGGAAAACGAGTGACAATATG 58.970 41.667 0.00 0.00 0.00 1.78
317 318 5.572211 CATGGAAAACGAGTGACAATATGG 58.428 41.667 0.00 0.00 0.00 2.74
318 319 4.900684 TGGAAAACGAGTGACAATATGGA 58.099 39.130 0.00 0.00 0.00 3.41
319 320 4.693566 TGGAAAACGAGTGACAATATGGAC 59.306 41.667 0.00 0.00 0.00 4.02
320 321 4.693566 GGAAAACGAGTGACAATATGGACA 59.306 41.667 0.00 0.00 0.00 4.02
321 322 5.390567 GGAAAACGAGTGACAATATGGACAC 60.391 44.000 4.71 4.71 32.21 3.67
322 323 2.876091 ACGAGTGACAATATGGACACG 58.124 47.619 7.00 0.14 35.29 4.49
323 324 2.193447 CGAGTGACAATATGGACACGG 58.807 52.381 7.00 0.97 35.29 4.94
324 325 2.416836 CGAGTGACAATATGGACACGGT 60.417 50.000 7.00 0.00 35.29 4.83
325 326 2.930040 GAGTGACAATATGGACACGGTG 59.070 50.000 6.58 6.58 35.29 4.94
326 327 1.396996 GTGACAATATGGACACGGTGC 59.603 52.381 8.30 0.93 0.00 5.01
327 328 1.002544 TGACAATATGGACACGGTGCA 59.997 47.619 8.30 0.00 38.41 4.57
328 329 1.665679 GACAATATGGACACGGTGCAG 59.334 52.381 8.30 0.00 37.30 4.41
329 330 1.277842 ACAATATGGACACGGTGCAGA 59.722 47.619 8.30 0.00 37.30 4.26
330 331 1.665679 CAATATGGACACGGTGCAGAC 59.334 52.381 8.30 0.00 37.30 3.51
331 332 0.901827 ATATGGACACGGTGCAGACA 59.098 50.000 8.30 2.69 37.30 3.41
332 333 0.682292 TATGGACACGGTGCAGACAA 59.318 50.000 8.30 0.00 37.30 3.18
333 334 0.179032 ATGGACACGGTGCAGACAAA 60.179 50.000 8.30 0.00 37.30 2.83
334 335 0.813610 TGGACACGGTGCAGACAAAG 60.814 55.000 8.30 0.00 29.02 2.77
335 336 1.507141 GGACACGGTGCAGACAAAGG 61.507 60.000 8.30 0.00 0.00 3.11
336 337 1.507141 GACACGGTGCAGACAAAGGG 61.507 60.000 8.30 0.00 0.00 3.95
337 338 1.525995 CACGGTGCAGACAAAGGGT 60.526 57.895 0.00 0.00 0.00 4.34
338 339 1.525995 ACGGTGCAGACAAAGGGTG 60.526 57.895 0.00 0.00 0.00 4.61
339 340 2.908073 CGGTGCAGACAAAGGGTGC 61.908 63.158 0.00 0.00 37.73 5.01
340 341 1.827789 GGTGCAGACAAAGGGTGCA 60.828 57.895 0.00 0.00 44.80 4.57
341 342 4.927557 TGCAGACAAAGGGTGCAT 57.072 50.000 0.00 0.00 42.20 3.96
342 343 2.644887 TGCAGACAAAGGGTGCATC 58.355 52.632 0.00 0.00 42.20 3.91
343 344 0.111061 TGCAGACAAAGGGTGCATCT 59.889 50.000 0.00 0.00 42.20 2.90
344 345 0.807496 GCAGACAAAGGGTGCATCTC 59.193 55.000 0.00 0.00 37.16 2.75
345 346 1.883638 GCAGACAAAGGGTGCATCTCA 60.884 52.381 0.00 0.00 37.16 3.27
346 347 2.719739 CAGACAAAGGGTGCATCTCAT 58.280 47.619 0.00 0.00 0.00 2.90
347 348 2.681848 CAGACAAAGGGTGCATCTCATC 59.318 50.000 0.00 0.00 0.00 2.92
348 349 2.019984 GACAAAGGGTGCATCTCATCC 58.980 52.381 0.00 0.00 46.71 3.51
352 353 3.575506 GGGTGCATCTCATCCAACA 57.424 52.632 0.00 0.00 45.60 3.33
353 354 2.062971 GGGTGCATCTCATCCAACAT 57.937 50.000 0.00 0.00 45.60 2.71
354 355 1.679680 GGGTGCATCTCATCCAACATG 59.320 52.381 0.00 0.00 45.60 3.21
355 356 1.066605 GGTGCATCTCATCCAACATGC 59.933 52.381 0.00 0.00 41.75 4.06
357 358 2.661718 TGCATCTCATCCAACATGCAT 58.338 42.857 0.00 0.00 45.19 3.96
358 359 3.028130 TGCATCTCATCCAACATGCATT 58.972 40.909 0.00 0.00 45.19 3.56
359 360 3.067601 TGCATCTCATCCAACATGCATTC 59.932 43.478 0.00 0.00 45.19 2.67
360 361 3.067601 GCATCTCATCCAACATGCATTCA 59.932 43.478 0.00 0.00 41.16 2.57
361 362 4.262036 GCATCTCATCCAACATGCATTCAT 60.262 41.667 0.00 0.00 41.16 2.57
371 372 4.365287 GCATTCATGCGTTCACGG 57.635 55.556 0.81 0.00 44.67 4.94
372 373 1.226379 GCATTCATGCGTTCACGGG 60.226 57.895 0.81 0.00 44.67 5.28
373 374 1.922135 GCATTCATGCGTTCACGGGT 61.922 55.000 0.81 0.00 44.67 5.28
374 375 0.179192 CATTCATGCGTTCACGGGTG 60.179 55.000 0.81 0.00 40.23 4.61
375 376 0.605319 ATTCATGCGTTCACGGGTGT 60.605 50.000 0.81 0.00 40.23 4.16
376 377 1.225376 TTCATGCGTTCACGGGTGTC 61.225 55.000 0.81 0.00 40.23 3.67
377 378 2.736995 ATGCGTTCACGGGTGTCG 60.737 61.111 0.81 12.00 45.88 4.35
387 388 3.308705 GGGTGTCGTCTCGGGGTT 61.309 66.667 0.00 0.00 0.00 4.11
388 389 1.978617 GGGTGTCGTCTCGGGGTTA 60.979 63.158 0.00 0.00 0.00 2.85
389 390 1.325476 GGGTGTCGTCTCGGGGTTAT 61.325 60.000 0.00 0.00 0.00 1.89
390 391 1.392589 GGTGTCGTCTCGGGGTTATA 58.607 55.000 0.00 0.00 0.00 0.98
391 392 1.066152 GGTGTCGTCTCGGGGTTATAC 59.934 57.143 0.00 0.00 0.00 1.47
392 393 1.066152 GTGTCGTCTCGGGGTTATACC 59.934 57.143 0.00 0.00 37.60 2.73
393 394 1.064463 TGTCGTCTCGGGGTTATACCT 60.064 52.381 0.00 0.00 38.64 3.08
394 395 2.027385 GTCGTCTCGGGGTTATACCTT 58.973 52.381 0.00 0.00 38.64 3.50
395 396 2.428530 GTCGTCTCGGGGTTATACCTTT 59.571 50.000 0.00 0.00 38.64 3.11
396 397 2.428171 TCGTCTCGGGGTTATACCTTTG 59.572 50.000 0.00 0.00 38.64 2.77
397 398 2.428171 CGTCTCGGGGTTATACCTTTGA 59.572 50.000 0.00 0.00 38.64 2.69
398 399 3.119029 CGTCTCGGGGTTATACCTTTGAA 60.119 47.826 0.00 0.00 38.64 2.69
399 400 4.439968 GTCTCGGGGTTATACCTTTGAAG 58.560 47.826 0.00 0.00 38.64 3.02
400 401 3.118519 TCTCGGGGTTATACCTTTGAAGC 60.119 47.826 0.00 0.00 38.64 3.86
401 402 1.937899 CGGGGTTATACCTTTGAAGCG 59.062 52.381 0.00 0.00 38.64 4.68
402 403 2.678769 CGGGGTTATACCTTTGAAGCGT 60.679 50.000 0.00 0.00 38.64 5.07
403 404 2.941064 GGGGTTATACCTTTGAAGCGTC 59.059 50.000 0.00 0.00 38.64 5.19
404 405 2.941064 GGGTTATACCTTTGAAGCGTCC 59.059 50.000 0.00 0.00 38.64 4.79
405 406 2.606272 GGTTATACCTTTGAAGCGTCCG 59.394 50.000 0.00 0.00 34.73 4.79
406 407 3.256558 GTTATACCTTTGAAGCGTCCGT 58.743 45.455 0.00 0.00 0.00 4.69
407 408 2.467566 ATACCTTTGAAGCGTCCGTT 57.532 45.000 0.00 0.00 0.00 4.44
408 409 2.243602 TACCTTTGAAGCGTCCGTTT 57.756 45.000 0.00 0.00 0.00 3.60
409 410 1.385528 ACCTTTGAAGCGTCCGTTTT 58.614 45.000 0.00 0.00 0.00 2.43
410 411 1.332686 ACCTTTGAAGCGTCCGTTTTC 59.667 47.619 0.00 0.00 0.00 2.29
411 412 1.658968 CTTTGAAGCGTCCGTTTTCG 58.341 50.000 0.00 0.00 43.67 3.46
428 429 1.730501 TCGAAGTGTATCGAGTCGGT 58.269 50.000 13.54 8.42 46.12 4.69
429 430 1.395954 TCGAAGTGTATCGAGTCGGTG 59.604 52.381 13.54 0.00 46.12 4.94
430 431 1.129998 CGAAGTGTATCGAGTCGGTGT 59.870 52.381 13.54 2.00 45.48 4.16
431 432 2.349580 CGAAGTGTATCGAGTCGGTGTA 59.650 50.000 13.54 0.99 45.48 2.90
432 433 3.543656 CGAAGTGTATCGAGTCGGTGTAG 60.544 52.174 13.54 0.00 45.48 2.74
433 434 3.257469 AGTGTATCGAGTCGGTGTAGA 57.743 47.619 13.54 0.00 0.00 2.59
434 435 3.196463 AGTGTATCGAGTCGGTGTAGAG 58.804 50.000 13.54 0.00 0.00 2.43
435 436 2.287373 GTGTATCGAGTCGGTGTAGAGG 59.713 54.545 13.54 0.00 0.00 3.69
436 437 2.169144 TGTATCGAGTCGGTGTAGAGGA 59.831 50.000 13.54 0.00 0.00 3.71
437 438 2.414994 ATCGAGTCGGTGTAGAGGAA 57.585 50.000 13.54 0.00 0.00 3.36
438 439 1.735386 TCGAGTCGGTGTAGAGGAAG 58.265 55.000 13.54 0.00 0.00 3.46
439 440 1.002888 TCGAGTCGGTGTAGAGGAAGT 59.997 52.381 13.54 0.00 0.00 3.01
440 441 2.234661 TCGAGTCGGTGTAGAGGAAGTA 59.765 50.000 13.54 0.00 0.00 2.24
441 442 2.608546 CGAGTCGGTGTAGAGGAAGTAG 59.391 54.545 4.10 0.00 0.00 2.57
442 443 3.608796 GAGTCGGTGTAGAGGAAGTAGT 58.391 50.000 0.00 0.00 0.00 2.73
443 444 3.345414 AGTCGGTGTAGAGGAAGTAGTG 58.655 50.000 0.00 0.00 0.00 2.74
444 445 2.422832 GTCGGTGTAGAGGAAGTAGTGG 59.577 54.545 0.00 0.00 0.00 4.00
445 446 2.306805 TCGGTGTAGAGGAAGTAGTGGA 59.693 50.000 0.00 0.00 0.00 4.02
446 447 3.087031 CGGTGTAGAGGAAGTAGTGGAA 58.913 50.000 0.00 0.00 0.00 3.53
447 448 3.128938 CGGTGTAGAGGAAGTAGTGGAAG 59.871 52.174 0.00 0.00 0.00 3.46
448 449 4.087907 GGTGTAGAGGAAGTAGTGGAAGT 58.912 47.826 0.00 0.00 0.00 3.01
449 450 5.259632 GGTGTAGAGGAAGTAGTGGAAGTA 58.740 45.833 0.00 0.00 0.00 2.24
450 451 5.357596 GGTGTAGAGGAAGTAGTGGAAGTAG 59.642 48.000 0.00 0.00 0.00 2.57
451 452 6.179040 GTGTAGAGGAAGTAGTGGAAGTAGA 58.821 44.000 0.00 0.00 0.00 2.59
452 453 6.093909 GTGTAGAGGAAGTAGTGGAAGTAGAC 59.906 46.154 0.00 0.00 0.00 2.59
453 454 4.263435 AGAGGAAGTAGTGGAAGTAGACG 58.737 47.826 0.00 0.00 0.00 4.18
454 455 4.009002 GAGGAAGTAGTGGAAGTAGACGT 58.991 47.826 0.00 0.00 0.00 4.34
455 456 4.405548 AGGAAGTAGTGGAAGTAGACGTT 58.594 43.478 0.00 0.00 0.00 3.99
456 457 5.564550 AGGAAGTAGTGGAAGTAGACGTTA 58.435 41.667 0.00 0.00 0.00 3.18
457 458 6.186234 AGGAAGTAGTGGAAGTAGACGTTAT 58.814 40.000 0.00 0.00 0.00 1.89
458 459 6.318396 AGGAAGTAGTGGAAGTAGACGTTATC 59.682 42.308 0.00 0.00 0.00 1.75
459 460 5.731599 AGTAGTGGAAGTAGACGTTATCG 57.268 43.478 0.00 0.00 43.34 2.92
460 461 4.574013 AGTAGTGGAAGTAGACGTTATCGG 59.426 45.833 0.00 0.00 41.85 4.18
461 462 3.614092 AGTGGAAGTAGACGTTATCGGA 58.386 45.455 0.00 0.00 41.85 4.55
462 463 3.376546 AGTGGAAGTAGACGTTATCGGAC 59.623 47.826 0.00 0.00 41.85 4.79
474 475 2.033141 TCGGACGTCGAGGGAAGT 59.967 61.111 9.92 0.00 43.74 3.01
475 476 1.296392 TCGGACGTCGAGGGAAGTA 59.704 57.895 9.92 0.00 43.74 2.24
476 477 0.742281 TCGGACGTCGAGGGAAGTAG 60.742 60.000 9.92 0.00 43.74 2.57
477 478 1.023513 CGGACGTCGAGGGAAGTAGT 61.024 60.000 9.92 0.00 42.43 2.73
478 479 0.450983 GGACGTCGAGGGAAGTAGTG 59.549 60.000 9.92 0.00 34.93 2.74
479 480 0.450983 GACGTCGAGGGAAGTAGTGG 59.549 60.000 10.27 0.00 34.93 4.00
480 481 0.251077 ACGTCGAGGGAAGTAGTGGT 60.251 55.000 10.27 0.00 32.93 4.16
481 482 0.886563 CGTCGAGGGAAGTAGTGGTT 59.113 55.000 0.00 0.00 0.00 3.67
482 483 1.135460 CGTCGAGGGAAGTAGTGGTTC 60.135 57.143 0.00 0.00 0.00 3.62
483 484 1.891150 GTCGAGGGAAGTAGTGGTTCA 59.109 52.381 0.00 0.00 0.00 3.18
484 485 2.496470 GTCGAGGGAAGTAGTGGTTCAT 59.504 50.000 0.00 0.00 0.00 2.57
487 488 1.985159 AGGGAAGTAGTGGTTCATGCA 59.015 47.619 0.00 0.00 0.00 3.96
545 546 5.766174 GGGTGTAATGGTACTTGAAGAAACA 59.234 40.000 0.00 0.00 0.00 2.83
642 643 2.174319 GGATTTGACGAGCTCGGGC 61.174 63.158 36.93 27.96 44.95 6.13
666 667 5.182570 CAGATGATGGAGAAAGAAAACAGCA 59.817 40.000 0.00 0.00 31.68 4.41
818 819 0.963856 AGGTCATCCGCTGTCGTACA 60.964 55.000 0.00 0.00 39.05 2.90
1005 1010 2.817834 GCAAGACGCGCCATGGTA 60.818 61.111 14.67 0.00 0.00 3.25
1037 1042 2.747855 CTGCGCAAGGGGAAGGAC 60.748 66.667 13.05 0.00 38.28 3.85
1070 1075 3.654021 TGGTGCTGGAGGAACACA 58.346 55.556 0.00 0.00 36.00 3.72
1131 1136 1.338337 CGGAGATACCAGAGACGCATT 59.662 52.381 0.00 0.00 38.90 3.56
1305 1310 1.005275 CGCTGGATCGATCAGGCAT 60.005 57.895 28.34 0.00 33.16 4.40
1311 1316 0.683973 GATCGATCAGGCATGGGAGT 59.316 55.000 20.52 0.00 0.00 3.85
1317 1322 0.041684 TCAGGCATGGGAGTGAGAGA 59.958 55.000 0.00 0.00 0.00 3.10
1337 1342 1.496060 TTGGGGTATCGAGCAGTGAT 58.504 50.000 0.00 0.00 0.00 3.06
1399 1407 1.000233 TCGCTAGGTTTACGGGGGA 60.000 57.895 0.00 0.00 0.00 4.81
1442 1450 3.071206 GGACGAGGCTGCTGGAGA 61.071 66.667 0.00 0.00 0.00 3.71
1487 1495 0.043485 GGGGTTCTCCTCTCTCCCTT 59.957 60.000 0.00 0.00 38.31 3.95
1978 2001 8.295288 AGTTGAGTTGCAAAAGATTTATGAGAG 58.705 33.333 0.00 0.00 38.44 3.20
2068 2107 4.385754 GGAAACCCTAGAAGGCATCTGAAT 60.386 45.833 1.83 0.00 39.30 2.57
2082 2121 0.462759 CTGAATCTCCGGTCTTGGGC 60.463 60.000 0.00 0.00 0.00 5.36
2275 2314 3.541632 AGGAACGAAGTGAAACACATGT 58.458 40.909 0.00 0.00 45.00 3.21
2437 2476 1.909986 TCGGATCCCACACATACCAAA 59.090 47.619 6.06 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.930693 TGTTTAAAATTCTTGTTGTACCAAGTT 57.069 25.926 10.48 2.75 42.01 2.66
31 32 9.911138 TGCGCATCATGATAATAACATTTAAAT 57.089 25.926 5.66 0.00 0.00 1.40
32 33 9.911138 ATGCGCATCATGATAATAACATTTAAA 57.089 25.926 19.28 0.00 33.26 1.52
48 49 2.018515 TGTTCATGTCATGCGCATCAT 58.981 42.857 22.51 18.93 35.31 2.45
49 50 1.451067 TGTTCATGTCATGCGCATCA 58.549 45.000 22.51 17.34 0.00 3.07
50 51 2.159476 ACTTGTTCATGTCATGCGCATC 60.159 45.455 22.51 11.35 0.00 3.91
51 52 1.814394 ACTTGTTCATGTCATGCGCAT 59.186 42.857 19.28 19.28 0.00 4.73
52 53 1.237533 ACTTGTTCATGTCATGCGCA 58.762 45.000 14.96 14.96 0.00 6.09
53 54 2.336554 AACTTGTTCATGTCATGCGC 57.663 45.000 8.03 0.00 0.00 6.09
54 55 4.263677 GCATAAACTTGTTCATGTCATGCG 59.736 41.667 8.03 0.00 0.00 4.73
55 56 5.162794 TGCATAAACTTGTTCATGTCATGC 58.837 37.500 8.03 19.33 37.39 4.06
56 57 7.821595 ATTGCATAAACTTGTTCATGTCATG 57.178 32.000 6.47 6.47 0.00 3.07
58 59 9.926158 AATAATTGCATAAACTTGTTCATGTCA 57.074 25.926 0.00 0.00 0.00 3.58
90 91 8.186821 GCTTCATAATAATGCTCTTGTCAACTT 58.813 33.333 0.00 0.00 32.76 2.66
91 92 7.337689 TGCTTCATAATAATGCTCTTGTCAACT 59.662 33.333 0.00 0.00 32.76 3.16
92 93 7.475015 TGCTTCATAATAATGCTCTTGTCAAC 58.525 34.615 0.00 0.00 32.76 3.18
93 94 7.628769 TGCTTCATAATAATGCTCTTGTCAA 57.371 32.000 0.00 0.00 32.76 3.18
94 95 7.812690 ATGCTTCATAATAATGCTCTTGTCA 57.187 32.000 0.00 0.00 32.76 3.58
95 96 8.965172 CAAATGCTTCATAATAATGCTCTTGTC 58.035 33.333 0.00 0.00 32.76 3.18
96 97 8.689061 TCAAATGCTTCATAATAATGCTCTTGT 58.311 29.630 0.00 0.00 32.76 3.16
97 98 8.965172 GTCAAATGCTTCATAATAATGCTCTTG 58.035 33.333 0.00 0.00 32.76 3.02
98 99 8.689061 TGTCAAATGCTTCATAATAATGCTCTT 58.311 29.630 0.00 0.00 32.76 2.85
99 100 8.229253 TGTCAAATGCTTCATAATAATGCTCT 57.771 30.769 0.00 0.00 32.76 4.09
100 101 9.125906 GATGTCAAATGCTTCATAATAATGCTC 57.874 33.333 0.00 0.00 32.76 4.26
101 102 7.806487 CGATGTCAAATGCTTCATAATAATGCT 59.194 33.333 0.00 0.00 32.76 3.79
102 103 7.592533 ACGATGTCAAATGCTTCATAATAATGC 59.407 33.333 0.00 0.00 32.76 3.56
103 104 8.898792 CACGATGTCAAATGCTTCATAATAATG 58.101 33.333 0.00 0.00 0.00 1.90
104 105 8.077991 CCACGATGTCAAATGCTTCATAATAAT 58.922 33.333 0.00 0.00 0.00 1.28
105 106 7.416817 CCACGATGTCAAATGCTTCATAATAA 58.583 34.615 0.00 0.00 0.00 1.40
106 107 6.513230 GCCACGATGTCAAATGCTTCATAATA 60.513 38.462 0.00 0.00 0.00 0.98
107 108 5.734220 GCCACGATGTCAAATGCTTCATAAT 60.734 40.000 0.00 0.00 0.00 1.28
108 109 4.438608 GCCACGATGTCAAATGCTTCATAA 60.439 41.667 0.00 0.00 0.00 1.90
109 110 3.065233 GCCACGATGTCAAATGCTTCATA 59.935 43.478 0.00 0.00 0.00 2.15
110 111 2.159338 GCCACGATGTCAAATGCTTCAT 60.159 45.455 0.00 0.00 0.00 2.57
111 112 1.199789 GCCACGATGTCAAATGCTTCA 59.800 47.619 0.00 0.00 0.00 3.02
112 113 1.791555 CGCCACGATGTCAAATGCTTC 60.792 52.381 0.00 0.00 0.00 3.86
113 114 0.168788 CGCCACGATGTCAAATGCTT 59.831 50.000 0.00 0.00 0.00 3.91
114 115 1.647545 CCGCCACGATGTCAAATGCT 61.648 55.000 0.00 0.00 0.00 3.79
115 116 1.226379 CCGCCACGATGTCAAATGC 60.226 57.895 0.00 0.00 0.00 3.56
116 117 0.801872 TTCCGCCACGATGTCAAATG 59.198 50.000 0.00 0.00 0.00 2.32
117 118 1.199097 GTTTCCGCCACGATGTCAAAT 59.801 47.619 0.00 0.00 0.00 2.32
118 119 0.589223 GTTTCCGCCACGATGTCAAA 59.411 50.000 0.00 0.00 0.00 2.69
119 120 0.533085 TGTTTCCGCCACGATGTCAA 60.533 50.000 0.00 0.00 0.00 3.18
120 121 0.533085 TTGTTTCCGCCACGATGTCA 60.533 50.000 0.00 0.00 0.00 3.58
121 122 0.589223 TTTGTTTCCGCCACGATGTC 59.411 50.000 0.00 0.00 0.00 3.06
122 123 1.001815 CTTTTGTTTCCGCCACGATGT 60.002 47.619 0.00 0.00 0.00 3.06
123 124 1.665735 CCTTTTGTTTCCGCCACGATG 60.666 52.381 0.00 0.00 0.00 3.84
124 125 0.596082 CCTTTTGTTTCCGCCACGAT 59.404 50.000 0.00 0.00 0.00 3.73
125 126 1.448922 CCCTTTTGTTTCCGCCACGA 61.449 55.000 0.00 0.00 0.00 4.35
126 127 1.007849 CCCTTTTGTTTCCGCCACG 60.008 57.895 0.00 0.00 0.00 4.94
127 128 1.365999 CCCCTTTTGTTTCCGCCAC 59.634 57.895 0.00 0.00 0.00 5.01
128 129 2.503382 GCCCCTTTTGTTTCCGCCA 61.503 57.895 0.00 0.00 0.00 5.69
129 130 2.342279 GCCCCTTTTGTTTCCGCC 59.658 61.111 0.00 0.00 0.00 6.13
130 131 2.049526 CGCCCCTTTTGTTTCCGC 60.050 61.111 0.00 0.00 0.00 5.54
131 132 2.049526 GCGCCCCTTTTGTTTCCG 60.050 61.111 0.00 0.00 0.00 4.30
132 133 2.342279 GGCGCCCCTTTTGTTTCC 59.658 61.111 18.11 0.00 0.00 3.13
133 134 1.300620 GTGGCGCCCCTTTTGTTTC 60.301 57.895 26.77 0.00 0.00 2.78
134 135 2.818841 GTGGCGCCCCTTTTGTTT 59.181 55.556 26.77 0.00 0.00 2.83
135 136 3.601685 CGTGGCGCCCCTTTTGTT 61.602 61.111 26.77 0.00 0.00 2.83
145 146 1.492319 TATTATCGTTGCCGTGGCGC 61.492 55.000 6.37 0.00 45.51 6.53
146 147 0.931702 TTATTATCGTTGCCGTGGCG 59.068 50.000 6.37 0.00 45.51 5.69
147 148 3.408288 TTTTATTATCGTTGCCGTGGC 57.592 42.857 3.30 3.30 42.35 5.01
148 149 3.781846 CGTTTTTATTATCGTTGCCGTGG 59.218 43.478 0.00 0.00 35.01 4.94
149 150 3.781846 CCGTTTTTATTATCGTTGCCGTG 59.218 43.478 0.00 0.00 35.01 4.94
150 151 3.436359 ACCGTTTTTATTATCGTTGCCGT 59.564 39.130 0.00 0.00 35.01 5.68
151 152 3.781846 CACCGTTTTTATTATCGTTGCCG 59.218 43.478 0.00 0.00 0.00 5.69
152 153 3.544682 GCACCGTTTTTATTATCGTTGCC 59.455 43.478 0.00 0.00 36.15 4.52
153 154 3.544682 GGCACCGTTTTTATTATCGTTGC 59.455 43.478 0.00 0.00 40.01 4.17
154 155 4.555747 GTGGCACCGTTTTTATTATCGTTG 59.444 41.667 6.29 0.00 0.00 4.10
155 156 4.669708 CGTGGCACCGTTTTTATTATCGTT 60.670 41.667 12.86 0.00 0.00 3.85
156 157 3.181518 CGTGGCACCGTTTTTATTATCGT 60.182 43.478 12.86 0.00 0.00 3.73
157 158 3.347443 CGTGGCACCGTTTTTATTATCG 58.653 45.455 12.86 0.00 0.00 2.92
158 159 3.687200 CCGTGGCACCGTTTTTATTATC 58.313 45.455 12.86 0.00 0.00 1.75
159 160 2.159352 GCCGTGGCACCGTTTTTATTAT 60.159 45.455 12.86 0.00 41.49 1.28
160 161 1.199558 GCCGTGGCACCGTTTTTATTA 59.800 47.619 12.86 0.00 41.49 0.98
161 162 0.038983 GCCGTGGCACCGTTTTTATT 60.039 50.000 12.86 0.00 41.49 1.40
162 163 1.582461 GCCGTGGCACCGTTTTTAT 59.418 52.632 12.86 0.00 41.49 1.40
163 164 3.032339 GCCGTGGCACCGTTTTTA 58.968 55.556 12.86 0.00 41.49 1.52
177 178 3.423154 GGAACTGGAACGCTGCCG 61.423 66.667 0.00 0.00 41.14 5.69
178 179 3.423154 CGGAACTGGAACGCTGCC 61.423 66.667 0.00 0.00 0.00 4.85
179 180 2.775032 TACCGGAACTGGAACGCTGC 62.775 60.000 9.46 0.00 0.00 5.25
180 181 0.320073 TTACCGGAACTGGAACGCTG 60.320 55.000 9.46 0.00 0.00 5.18
181 182 0.320160 GTTACCGGAACTGGAACGCT 60.320 55.000 9.46 0.00 34.96 5.07
182 183 2.156542 GTTACCGGAACTGGAACGC 58.843 57.895 9.46 0.00 34.96 4.84
190 191 3.498927 TCTCAATCGAGTTACCGGAAC 57.501 47.619 9.46 8.67 40.44 3.62
191 192 4.037208 GGTATCTCAATCGAGTTACCGGAA 59.963 45.833 9.46 0.00 46.88 4.30
192 193 3.567164 GGTATCTCAATCGAGTTACCGGA 59.433 47.826 9.46 0.00 46.88 5.14
193 194 3.898529 GGTATCTCAATCGAGTTACCGG 58.101 50.000 0.00 0.00 46.88 5.28
196 197 4.617645 GCATCGGTATCTCAATCGAGTTAC 59.382 45.833 0.00 0.00 41.08 2.50
197 198 4.277423 TGCATCGGTATCTCAATCGAGTTA 59.723 41.667 0.00 0.00 40.44 2.24
198 199 3.068165 TGCATCGGTATCTCAATCGAGTT 59.932 43.478 0.00 0.00 40.44 3.01
199 200 2.623416 TGCATCGGTATCTCAATCGAGT 59.377 45.455 0.00 0.00 40.44 4.18
200 201 3.288809 TGCATCGGTATCTCAATCGAG 57.711 47.619 0.00 0.00 40.98 4.04
201 202 3.726291 TTGCATCGGTATCTCAATCGA 57.274 42.857 0.00 0.00 36.07 3.59
202 203 3.185188 CCTTTGCATCGGTATCTCAATCG 59.815 47.826 0.00 0.00 0.00 3.34
203 204 4.380531 TCCTTTGCATCGGTATCTCAATC 58.619 43.478 0.00 0.00 0.00 2.67
204 205 4.101585 TCTCCTTTGCATCGGTATCTCAAT 59.898 41.667 0.00 0.00 0.00 2.57
205 206 3.450817 TCTCCTTTGCATCGGTATCTCAA 59.549 43.478 0.00 0.00 0.00 3.02
206 207 3.031013 TCTCCTTTGCATCGGTATCTCA 58.969 45.455 0.00 0.00 0.00 3.27
207 208 3.735237 TCTCCTTTGCATCGGTATCTC 57.265 47.619 0.00 0.00 0.00 2.75
208 209 3.452627 ACTTCTCCTTTGCATCGGTATCT 59.547 43.478 0.00 0.00 0.00 1.98
209 210 3.557595 CACTTCTCCTTTGCATCGGTATC 59.442 47.826 0.00 0.00 0.00 2.24
210 211 3.055094 ACACTTCTCCTTTGCATCGGTAT 60.055 43.478 0.00 0.00 0.00 2.73
211 212 2.301870 ACACTTCTCCTTTGCATCGGTA 59.698 45.455 0.00 0.00 0.00 4.02
212 213 1.072331 ACACTTCTCCTTTGCATCGGT 59.928 47.619 0.00 0.00 0.00 4.69
213 214 1.466167 CACACTTCTCCTTTGCATCGG 59.534 52.381 0.00 0.00 0.00 4.18
214 215 1.135859 GCACACTTCTCCTTTGCATCG 60.136 52.381 0.00 0.00 33.24 3.84
215 216 1.135859 CGCACACTTCTCCTTTGCATC 60.136 52.381 0.00 0.00 32.51 3.91
216 217 0.877071 CGCACACTTCTCCTTTGCAT 59.123 50.000 0.00 0.00 32.51 3.96
217 218 1.165907 CCGCACACTTCTCCTTTGCA 61.166 55.000 0.00 0.00 32.51 4.08
218 219 0.884704 TCCGCACACTTCTCCTTTGC 60.885 55.000 0.00 0.00 0.00 3.68
219 220 1.466167 CATCCGCACACTTCTCCTTTG 59.534 52.381 0.00 0.00 0.00 2.77
220 221 1.813513 CATCCGCACACTTCTCCTTT 58.186 50.000 0.00 0.00 0.00 3.11
221 222 0.674895 GCATCCGCACACTTCTCCTT 60.675 55.000 0.00 0.00 38.36 3.36
222 223 1.078848 GCATCCGCACACTTCTCCT 60.079 57.895 0.00 0.00 38.36 3.69
223 224 2.456119 CGCATCCGCACACTTCTCC 61.456 63.158 0.00 0.00 38.40 3.71
224 225 1.738099 ACGCATCCGCACACTTCTC 60.738 57.895 0.00 0.00 38.40 2.87
225 226 2.029288 CACGCATCCGCACACTTCT 61.029 57.895 0.00 0.00 38.40 2.85
226 227 1.565156 TTCACGCATCCGCACACTTC 61.565 55.000 0.00 0.00 38.40 3.01
227 228 1.163420 TTTCACGCATCCGCACACTT 61.163 50.000 0.00 0.00 38.40 3.16
228 229 1.163420 TTTTCACGCATCCGCACACT 61.163 50.000 0.00 0.00 38.40 3.55
229 230 0.317436 TTTTTCACGCATCCGCACAC 60.317 50.000 0.00 0.00 38.40 3.82
230 231 2.025719 TTTTTCACGCATCCGCACA 58.974 47.368 0.00 0.00 38.40 4.57
231 232 4.933483 TTTTTCACGCATCCGCAC 57.067 50.000 0.00 0.00 38.40 5.34
246 247 2.758648 GGAGCACCCCACCATTTTT 58.241 52.632 0.00 0.00 0.00 1.94
247 248 4.539235 GGAGCACCCCACCATTTT 57.461 55.556 0.00 0.00 0.00 1.82
281 282 0.322098 TTCCATGCCACTAACCCGTG 60.322 55.000 0.00 0.00 34.71 4.94
282 283 0.402504 TTTCCATGCCACTAACCCGT 59.597 50.000 0.00 0.00 0.00 5.28
283 284 1.201414 GTTTTCCATGCCACTAACCCG 59.799 52.381 0.00 0.00 0.00 5.28
284 285 1.201414 CGTTTTCCATGCCACTAACCC 59.799 52.381 0.00 0.00 0.00 4.11
285 286 2.156098 TCGTTTTCCATGCCACTAACC 58.844 47.619 0.00 0.00 0.00 2.85
286 287 2.812011 ACTCGTTTTCCATGCCACTAAC 59.188 45.455 0.00 0.00 0.00 2.34
287 288 2.811431 CACTCGTTTTCCATGCCACTAA 59.189 45.455 0.00 0.00 0.00 2.24
288 289 2.037902 TCACTCGTTTTCCATGCCACTA 59.962 45.455 0.00 0.00 0.00 2.74
289 290 1.202758 TCACTCGTTTTCCATGCCACT 60.203 47.619 0.00 0.00 0.00 4.00
290 291 1.069227 GTCACTCGTTTTCCATGCCAC 60.069 52.381 0.00 0.00 0.00 5.01
291 292 1.234821 GTCACTCGTTTTCCATGCCA 58.765 50.000 0.00 0.00 0.00 4.92
292 293 1.234821 TGTCACTCGTTTTCCATGCC 58.765 50.000 0.00 0.00 0.00 4.40
293 294 3.559238 ATTGTCACTCGTTTTCCATGC 57.441 42.857 0.00 0.00 0.00 4.06
294 295 5.353956 TCCATATTGTCACTCGTTTTCCATG 59.646 40.000 0.00 0.00 0.00 3.66
295 296 5.354234 GTCCATATTGTCACTCGTTTTCCAT 59.646 40.000 0.00 0.00 0.00 3.41
296 297 4.693566 GTCCATATTGTCACTCGTTTTCCA 59.306 41.667 0.00 0.00 0.00 3.53
297 298 4.693566 TGTCCATATTGTCACTCGTTTTCC 59.306 41.667 0.00 0.00 0.00 3.13
298 299 5.618561 GTGTCCATATTGTCACTCGTTTTC 58.381 41.667 0.00 0.00 0.00 2.29
299 300 4.151689 CGTGTCCATATTGTCACTCGTTTT 59.848 41.667 3.42 0.00 0.00 2.43
300 301 3.678072 CGTGTCCATATTGTCACTCGTTT 59.322 43.478 3.42 0.00 0.00 3.60
301 302 3.250744 CGTGTCCATATTGTCACTCGTT 58.749 45.455 3.42 0.00 0.00 3.85
302 303 2.416836 CCGTGTCCATATTGTCACTCGT 60.417 50.000 3.42 0.00 0.00 4.18
303 304 2.193447 CCGTGTCCATATTGTCACTCG 58.807 52.381 3.42 0.00 0.00 4.18
304 305 2.930040 CACCGTGTCCATATTGTCACTC 59.070 50.000 3.42 0.00 0.00 3.51
305 306 2.935238 GCACCGTGTCCATATTGTCACT 60.935 50.000 0.00 0.00 0.00 3.41
306 307 1.396996 GCACCGTGTCCATATTGTCAC 59.603 52.381 0.00 0.00 0.00 3.67
307 308 1.002544 TGCACCGTGTCCATATTGTCA 59.997 47.619 0.00 0.00 0.00 3.58
308 309 1.665679 CTGCACCGTGTCCATATTGTC 59.334 52.381 0.00 0.00 0.00 3.18
309 310 1.277842 TCTGCACCGTGTCCATATTGT 59.722 47.619 0.00 0.00 0.00 2.71
310 311 1.665679 GTCTGCACCGTGTCCATATTG 59.334 52.381 0.00 0.00 0.00 1.90
311 312 1.277842 TGTCTGCACCGTGTCCATATT 59.722 47.619 0.00 0.00 0.00 1.28
312 313 0.901827 TGTCTGCACCGTGTCCATAT 59.098 50.000 0.00 0.00 0.00 1.78
313 314 0.682292 TTGTCTGCACCGTGTCCATA 59.318 50.000 0.00 0.00 0.00 2.74
314 315 0.179032 TTTGTCTGCACCGTGTCCAT 60.179 50.000 0.00 0.00 0.00 3.41
315 316 0.813610 CTTTGTCTGCACCGTGTCCA 60.814 55.000 0.00 0.00 0.00 4.02
316 317 1.507141 CCTTTGTCTGCACCGTGTCC 61.507 60.000 0.00 0.00 0.00 4.02
317 318 1.507141 CCCTTTGTCTGCACCGTGTC 61.507 60.000 0.00 0.00 0.00 3.67
318 319 1.525995 CCCTTTGTCTGCACCGTGT 60.526 57.895 0.00 0.00 0.00 4.49
319 320 1.525995 ACCCTTTGTCTGCACCGTG 60.526 57.895 0.00 0.00 0.00 4.94
320 321 1.525995 CACCCTTTGTCTGCACCGT 60.526 57.895 0.00 0.00 0.00 4.83
321 322 2.908073 GCACCCTTTGTCTGCACCG 61.908 63.158 0.00 0.00 0.00 4.94
322 323 1.181098 ATGCACCCTTTGTCTGCACC 61.181 55.000 0.00 0.00 43.47 5.01
323 324 0.242017 GATGCACCCTTTGTCTGCAC 59.758 55.000 0.00 0.00 43.47 4.57
324 325 0.111061 AGATGCACCCTTTGTCTGCA 59.889 50.000 0.00 0.00 44.71 4.41
325 326 0.807496 GAGATGCACCCTTTGTCTGC 59.193 55.000 0.00 0.00 0.00 4.26
326 327 2.189594 TGAGATGCACCCTTTGTCTG 57.810 50.000 0.00 0.00 0.00 3.51
327 328 2.356535 GGATGAGATGCACCCTTTGTCT 60.357 50.000 0.00 0.00 0.00 3.41
328 329 2.019984 GGATGAGATGCACCCTTTGTC 58.980 52.381 0.00 0.00 0.00 3.18
329 330 1.355381 TGGATGAGATGCACCCTTTGT 59.645 47.619 0.00 0.00 0.00 2.83
330 331 2.133281 TGGATGAGATGCACCCTTTG 57.867 50.000 0.00 0.00 0.00 2.77
331 332 2.225091 TGTTGGATGAGATGCACCCTTT 60.225 45.455 0.00 0.00 0.00 3.11
332 333 1.355381 TGTTGGATGAGATGCACCCTT 59.645 47.619 0.00 0.00 0.00 3.95
333 334 0.994247 TGTTGGATGAGATGCACCCT 59.006 50.000 0.00 0.00 0.00 4.34
334 335 1.679680 CATGTTGGATGAGATGCACCC 59.320 52.381 0.00 0.00 0.00 4.61
335 336 1.066605 GCATGTTGGATGAGATGCACC 59.933 52.381 0.00 0.00 43.55 5.01
336 337 2.486951 GCATGTTGGATGAGATGCAC 57.513 50.000 0.00 0.00 43.55 4.57
338 339 3.067601 TGAATGCATGTTGGATGAGATGC 59.932 43.478 0.00 0.00 44.13 3.91
339 340 4.911514 TGAATGCATGTTGGATGAGATG 57.088 40.909 0.00 0.00 0.00 2.90
340 341 5.453567 CATGAATGCATGTTGGATGAGAT 57.546 39.130 5.39 0.00 45.41 2.75
341 342 4.911514 CATGAATGCATGTTGGATGAGA 57.088 40.909 5.39 0.00 45.41 3.27
355 356 0.179192 CACCCGTGAACGCATGAATG 60.179 55.000 0.00 0.00 38.18 2.67
356 357 0.605319 ACACCCGTGAACGCATGAAT 60.605 50.000 0.00 0.00 38.18 2.57
357 358 1.225376 GACACCCGTGAACGCATGAA 61.225 55.000 0.00 0.00 38.18 2.57
358 359 1.666553 GACACCCGTGAACGCATGA 60.667 57.895 0.00 0.00 38.18 3.07
359 360 2.860293 GACACCCGTGAACGCATG 59.140 61.111 0.96 0.47 38.18 4.06
360 361 2.736995 CGACACCCGTGAACGCAT 60.737 61.111 0.96 0.00 38.18 4.73
370 371 1.325476 ATAACCCCGAGACGACACCC 61.325 60.000 0.00 0.00 0.00 4.61
371 372 1.066152 GTATAACCCCGAGACGACACC 59.934 57.143 0.00 0.00 0.00 4.16
372 373 1.066152 GGTATAACCCCGAGACGACAC 59.934 57.143 0.00 0.00 30.04 3.67
373 374 1.064463 AGGTATAACCCCGAGACGACA 60.064 52.381 0.00 0.00 39.75 4.35
374 375 1.685148 AGGTATAACCCCGAGACGAC 58.315 55.000 0.00 0.00 39.75 4.34
375 376 2.428171 CAAAGGTATAACCCCGAGACGA 59.572 50.000 0.00 0.00 39.75 4.20
376 377 2.428171 TCAAAGGTATAACCCCGAGACG 59.572 50.000 0.00 0.00 39.75 4.18
377 378 4.439968 CTTCAAAGGTATAACCCCGAGAC 58.560 47.826 0.00 0.00 39.75 3.36
378 379 3.118519 GCTTCAAAGGTATAACCCCGAGA 60.119 47.826 0.00 0.00 39.75 4.04
379 380 3.203716 GCTTCAAAGGTATAACCCCGAG 58.796 50.000 0.00 0.00 39.75 4.63
380 381 2.419021 CGCTTCAAAGGTATAACCCCGA 60.419 50.000 0.00 0.00 39.75 5.14
381 382 1.937899 CGCTTCAAAGGTATAACCCCG 59.062 52.381 0.00 0.00 39.75 5.73
382 383 2.941064 GACGCTTCAAAGGTATAACCCC 59.059 50.000 0.00 0.00 39.75 4.95
383 384 2.941064 GGACGCTTCAAAGGTATAACCC 59.059 50.000 0.00 0.00 39.75 4.11
384 385 2.606272 CGGACGCTTCAAAGGTATAACC 59.394 50.000 0.00 0.00 38.99 2.85
385 386 3.256558 ACGGACGCTTCAAAGGTATAAC 58.743 45.455 0.00 0.00 0.00 1.89
386 387 3.598019 ACGGACGCTTCAAAGGTATAA 57.402 42.857 0.00 0.00 0.00 0.98
387 388 3.598019 AACGGACGCTTCAAAGGTATA 57.402 42.857 0.00 0.00 0.00 1.47
388 389 2.467566 AACGGACGCTTCAAAGGTAT 57.532 45.000 0.00 0.00 0.00 2.73
389 390 2.243602 AAACGGACGCTTCAAAGGTA 57.756 45.000 0.00 0.00 0.00 3.08
390 391 1.332686 GAAAACGGACGCTTCAAAGGT 59.667 47.619 0.00 0.00 0.00 3.50
391 392 1.659211 CGAAAACGGACGCTTCAAAGG 60.659 52.381 7.58 0.00 0.00 3.11
392 393 1.259507 TCGAAAACGGACGCTTCAAAG 59.740 47.619 7.58 0.00 0.00 2.77
393 394 1.288350 TCGAAAACGGACGCTTCAAA 58.712 45.000 7.58 0.00 0.00 2.69
394 395 1.259507 CTTCGAAAACGGACGCTTCAA 59.740 47.619 0.00 2.25 0.00 2.69
395 396 0.856641 CTTCGAAAACGGACGCTTCA 59.143 50.000 0.00 0.00 0.00 3.02
396 397 0.857287 ACTTCGAAAACGGACGCTTC 59.143 50.000 0.00 0.00 0.00 3.86
397 398 0.580104 CACTTCGAAAACGGACGCTT 59.420 50.000 0.00 0.00 0.00 4.68
398 399 0.529119 ACACTTCGAAAACGGACGCT 60.529 50.000 0.00 0.00 0.00 5.07
399 400 1.130955 TACACTTCGAAAACGGACGC 58.869 50.000 0.00 0.00 0.00 5.19
400 401 2.026038 CGATACACTTCGAAAACGGACG 59.974 50.000 0.00 0.00 41.62 4.79
401 402 3.236816 TCGATACACTTCGAAAACGGAC 58.763 45.455 0.00 0.00 44.56 4.79
402 403 3.058016 ACTCGATACACTTCGAAAACGGA 60.058 43.478 0.00 0.00 46.54 4.69
403 404 3.240069 ACTCGATACACTTCGAAAACGG 58.760 45.455 0.00 0.00 46.54 4.44
404 405 3.003312 CGACTCGATACACTTCGAAAACG 60.003 47.826 0.00 0.00 46.54 3.60
405 406 3.300066 CCGACTCGATACACTTCGAAAAC 59.700 47.826 0.00 0.00 46.54 2.43
406 407 3.058016 ACCGACTCGATACACTTCGAAAA 60.058 43.478 0.00 0.00 46.54 2.29
407 408 2.485426 ACCGACTCGATACACTTCGAAA 59.515 45.455 0.00 0.00 46.54 3.46
408 409 2.079158 ACCGACTCGATACACTTCGAA 58.921 47.619 0.00 0.00 46.54 3.71
409 410 1.395954 CACCGACTCGATACACTTCGA 59.604 52.381 0.00 0.00 45.27 3.71
410 411 1.129998 ACACCGACTCGATACACTTCG 59.870 52.381 0.00 0.00 40.46 3.79
411 412 2.915738 ACACCGACTCGATACACTTC 57.084 50.000 0.00 0.00 0.00 3.01
412 413 3.603532 TCTACACCGACTCGATACACTT 58.396 45.455 0.00 0.00 0.00 3.16
413 414 3.196463 CTCTACACCGACTCGATACACT 58.804 50.000 0.00 0.00 0.00 3.55
414 415 2.287373 CCTCTACACCGACTCGATACAC 59.713 54.545 0.00 0.00 0.00 2.90
415 416 2.169144 TCCTCTACACCGACTCGATACA 59.831 50.000 0.00 0.00 0.00 2.29
416 417 2.831333 TCCTCTACACCGACTCGATAC 58.169 52.381 0.00 0.00 0.00 2.24
417 418 3.118482 ACTTCCTCTACACCGACTCGATA 60.118 47.826 0.00 0.00 0.00 2.92
418 419 2.290464 CTTCCTCTACACCGACTCGAT 58.710 52.381 0.00 0.00 0.00 3.59
419 420 1.002888 ACTTCCTCTACACCGACTCGA 59.997 52.381 0.00 0.00 0.00 4.04
420 421 1.451067 ACTTCCTCTACACCGACTCG 58.549 55.000 0.00 0.00 0.00 4.18
421 422 3.374678 CACTACTTCCTCTACACCGACTC 59.625 52.174 0.00 0.00 0.00 3.36
422 423 3.345414 CACTACTTCCTCTACACCGACT 58.655 50.000 0.00 0.00 0.00 4.18
423 424 2.422832 CCACTACTTCCTCTACACCGAC 59.577 54.545 0.00 0.00 0.00 4.79
424 425 2.306805 TCCACTACTTCCTCTACACCGA 59.693 50.000 0.00 0.00 0.00 4.69
425 426 2.719739 TCCACTACTTCCTCTACACCG 58.280 52.381 0.00 0.00 0.00 4.94
426 427 4.087907 ACTTCCACTACTTCCTCTACACC 58.912 47.826 0.00 0.00 0.00 4.16
427 428 6.093909 GTCTACTTCCACTACTTCCTCTACAC 59.906 46.154 0.00 0.00 0.00 2.90
428 429 6.179040 GTCTACTTCCACTACTTCCTCTACA 58.821 44.000 0.00 0.00 0.00 2.74
429 430 5.294060 CGTCTACTTCCACTACTTCCTCTAC 59.706 48.000 0.00 0.00 0.00 2.59
430 431 5.046014 ACGTCTACTTCCACTACTTCCTCTA 60.046 44.000 0.00 0.00 0.00 2.43
431 432 4.263418 ACGTCTACTTCCACTACTTCCTCT 60.263 45.833 0.00 0.00 0.00 3.69
432 433 4.009002 ACGTCTACTTCCACTACTTCCTC 58.991 47.826 0.00 0.00 0.00 3.71
433 434 4.031636 ACGTCTACTTCCACTACTTCCT 57.968 45.455 0.00 0.00 0.00 3.36
434 435 4.780275 AACGTCTACTTCCACTACTTCC 57.220 45.455 0.00 0.00 0.00 3.46
435 436 6.190962 CGATAACGTCTACTTCCACTACTTC 58.809 44.000 0.00 0.00 34.56 3.01
436 437 5.065731 CCGATAACGTCTACTTCCACTACTT 59.934 44.000 0.00 0.00 37.88 2.24
437 438 4.574013 CCGATAACGTCTACTTCCACTACT 59.426 45.833 0.00 0.00 37.88 2.57
438 439 4.572389 TCCGATAACGTCTACTTCCACTAC 59.428 45.833 0.00 0.00 37.88 2.73
439 440 4.572389 GTCCGATAACGTCTACTTCCACTA 59.428 45.833 0.00 0.00 37.88 2.74
440 441 3.376546 GTCCGATAACGTCTACTTCCACT 59.623 47.826 0.00 0.00 37.88 4.00
441 442 3.689346 GTCCGATAACGTCTACTTCCAC 58.311 50.000 0.00 0.00 37.88 4.02
442 443 2.352651 CGTCCGATAACGTCTACTTCCA 59.647 50.000 0.00 0.00 37.86 3.53
443 444 2.979299 CGTCCGATAACGTCTACTTCC 58.021 52.381 0.00 0.00 37.86 3.46
457 458 0.742281 CTACTTCCCTCGACGTCCGA 60.742 60.000 10.58 9.76 46.35 4.55
458 459 1.023513 ACTACTTCCCTCGACGTCCG 61.024 60.000 10.58 5.50 40.25 4.79
459 460 0.450983 CACTACTTCCCTCGACGTCC 59.549 60.000 10.58 0.00 0.00 4.79
460 461 0.450983 CCACTACTTCCCTCGACGTC 59.549 60.000 5.18 5.18 0.00 4.34
461 462 0.251077 ACCACTACTTCCCTCGACGT 60.251 55.000 0.00 0.00 0.00 4.34
462 463 0.886563 AACCACTACTTCCCTCGACG 59.113 55.000 0.00 0.00 0.00 5.12
463 464 1.891150 TGAACCACTACTTCCCTCGAC 59.109 52.381 0.00 0.00 0.00 4.20
464 465 2.297698 TGAACCACTACTTCCCTCGA 57.702 50.000 0.00 0.00 0.00 4.04
465 466 2.893637 CATGAACCACTACTTCCCTCG 58.106 52.381 0.00 0.00 0.00 4.63
466 467 2.027192 TGCATGAACCACTACTTCCCTC 60.027 50.000 0.00 0.00 0.00 4.30
467 468 1.985159 TGCATGAACCACTACTTCCCT 59.015 47.619 0.00 0.00 0.00 4.20
468 469 2.488153 GTTGCATGAACCACTACTTCCC 59.512 50.000 0.00 0.00 0.00 3.97
469 470 2.159627 CGTTGCATGAACCACTACTTCC 59.840 50.000 0.00 0.00 0.00 3.46
470 471 2.159627 CCGTTGCATGAACCACTACTTC 59.840 50.000 0.00 0.00 0.00 3.01
471 472 2.151202 CCGTTGCATGAACCACTACTT 58.849 47.619 0.00 0.00 0.00 2.24
472 473 1.071699 ACCGTTGCATGAACCACTACT 59.928 47.619 0.00 0.00 0.00 2.57
473 474 1.519408 ACCGTTGCATGAACCACTAC 58.481 50.000 0.00 0.00 0.00 2.73
474 475 2.300723 ACTACCGTTGCATGAACCACTA 59.699 45.455 0.00 0.00 0.00 2.74
475 476 1.071699 ACTACCGTTGCATGAACCACT 59.928 47.619 0.00 0.00 0.00 4.00
476 477 1.196808 CACTACCGTTGCATGAACCAC 59.803 52.381 0.00 0.00 0.00 4.16
477 478 1.518325 CACTACCGTTGCATGAACCA 58.482 50.000 0.00 0.00 0.00 3.67
478 479 0.802494 CCACTACCGTTGCATGAACC 59.198 55.000 0.00 0.00 0.00 3.62
479 480 1.803334 TCCACTACCGTTGCATGAAC 58.197 50.000 0.00 0.00 0.00 3.18
480 481 2.147958 GTTCCACTACCGTTGCATGAA 58.852 47.619 0.00 0.00 0.00 2.57
481 482 1.346395 AGTTCCACTACCGTTGCATGA 59.654 47.619 0.00 0.00 0.00 3.07
482 483 1.808411 AGTTCCACTACCGTTGCATG 58.192 50.000 0.00 0.00 0.00 4.06
483 484 2.224426 TGAAGTTCCACTACCGTTGCAT 60.224 45.455 0.00 0.00 0.00 3.96
484 485 1.139256 TGAAGTTCCACTACCGTTGCA 59.861 47.619 0.00 0.00 0.00 4.08
487 488 3.547054 TTGTGAAGTTCCACTACCGTT 57.453 42.857 0.00 0.00 37.89 4.44
545 546 2.028476 TGGATGATCAAGGACGTTTCGT 60.028 45.455 0.00 0.00 45.10 3.85
642 643 5.182570 TGCTGTTTTCTTTCTCCATCATCTG 59.817 40.000 0.00 0.00 0.00 2.90
666 667 3.739519 GCCTTCGTGTCTATTGATGCTCT 60.740 47.826 0.00 0.00 0.00 4.09
764 765 3.691342 CCACCTTCGACCTCGGCA 61.691 66.667 0.00 0.00 40.29 5.69
818 819 2.273912 GCCTTGCTGCTCCTGCTTT 61.274 57.895 0.00 0.00 40.48 3.51
863 864 0.250424 CCATGGATGCCATCGTGCTA 60.250 55.000 5.56 0.00 43.15 3.49
918 919 1.568612 CTTCGCCGCTCTTTTGCTCA 61.569 55.000 0.00 0.00 0.00 4.26
1005 1010 4.079850 CAGGAGCTCGCAGCCACT 62.080 66.667 7.83 0.00 43.77 4.00
1131 1136 3.385384 CAGCACTCGCCTCCCTGA 61.385 66.667 0.00 0.00 39.83 3.86
1142 1147 4.385405 GAGCCTCCGTGCAGCACT 62.385 66.667 23.15 2.96 31.34 4.40
1305 1310 0.119155 ACCCCAATCTCTCACTCCCA 59.881 55.000 0.00 0.00 0.00 4.37
1311 1316 1.964223 GCTCGATACCCCAATCTCTCA 59.036 52.381 0.00 0.00 0.00 3.27
1317 1322 1.496060 TCACTGCTCGATACCCCAAT 58.504 50.000 0.00 0.00 0.00 3.16
1337 1342 3.249189 GCTGGCCCGATCCCCATA 61.249 66.667 0.00 0.00 0.00 2.74
1399 1407 3.971702 GCCCAAGGCCCAGTCACT 61.972 66.667 0.00 0.00 44.06 3.41
1442 1450 3.953775 CCAGTCGGCCAGTTGGGT 61.954 66.667 2.24 0.00 39.65 4.51
1548 1558 3.452990 CCTAAGTCCCTTCTCTTCCCTTC 59.547 52.174 0.00 0.00 0.00 3.46
1905 1927 4.947388 TCCATTTAAACCGAGGGAATTCAG 59.053 41.667 7.93 0.00 0.00 3.02
2068 2107 2.203788 ACAGCCCAAGACCGGAGA 60.204 61.111 9.46 0.00 0.00 3.71
2082 2121 1.208052 CTGTCCCCATAGGTGTGACAG 59.792 57.143 10.93 10.93 42.12 3.51
2275 2314 1.837051 AGGACACTTGACTGGCCGA 60.837 57.895 0.00 0.00 45.28 5.54
2437 2476 8.689061 AGCATATTGTGTGTATGATTGAAATGT 58.311 29.630 0.00 0.00 32.52 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.