Multiple sequence alignment - TraesCS4A01G193700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G193700 chr4A 100.000 7197 0 0 1 7197 475424746 475417550 0.000000e+00 13291.0
1 TraesCS4A01G193700 chr4A 84.091 792 74 34 4231 5002 22733573 22732814 0.000000e+00 717.0
2 TraesCS4A01G193700 chr4A 74.646 706 160 14 6217 6910 455298762 455298064 1.960000e-75 294.0
3 TraesCS4A01G193700 chr4A 92.500 200 14 1 6215 6414 584035384 584035186 1.180000e-72 285.0
4 TraesCS4A01G193700 chr4A 100.000 101 0 0 6814 6914 475417835 475417735 3.430000e-43 187.0
5 TraesCS4A01G193700 chr4A 100.000 101 0 0 6912 7012 475417933 475417833 3.430000e-43 187.0
6 TraesCS4A01G193700 chr4A 75.806 310 68 5 6213 6520 732824571 732824267 4.500000e-32 150.0
7 TraesCS4A01G193700 chr4B 96.188 3410 72 22 870 4230 143306395 143309795 0.000000e+00 5524.0
8 TraesCS4A01G193700 chr4B 95.129 1088 36 5 5134 6214 143310068 143311145 0.000000e+00 1700.0
9 TraesCS4A01G193700 chr4B 81.744 734 116 14 161 885 143140495 143141219 1.340000e-166 597.0
10 TraesCS4A01G193700 chr4B 94.318 88 5 0 5057 5144 143309879 143309966 1.260000e-27 135.0
11 TraesCS4A01G193700 chr4B 96.970 33 0 1 4996 5027 143309853 143309885 4.000000e-03 54.7
12 TraesCS4A01G193700 chr4D 98.469 2417 35 2 1814 4228 100796267 100798683 0.000000e+00 4257.0
13 TraesCS4A01G193700 chr4D 94.681 1222 34 15 5001 6213 100798728 100799927 0.000000e+00 1868.0
14 TraesCS4A01G193700 chr4D 92.346 993 28 8 870 1815 100795194 100796185 0.000000e+00 1369.0
15 TraesCS4A01G193700 chr4D 97.159 176 5 0 4051 4226 482703453 482703628 1.520000e-76 298.0
16 TraesCS4A01G193700 chr4D 95.082 183 7 2 4051 4232 18694830 18694649 3.290000e-73 287.0
17 TraesCS4A01G193700 chr4D 94.565 184 9 1 4051 4234 65536120 65536302 4.250000e-72 283.0
18 TraesCS4A01G193700 chr6A 82.181 1577 236 37 2046 3602 592808286 592809837 0.000000e+00 1314.0
19 TraesCS4A01G193700 chr6A 94.825 773 26 13 4231 5002 171799634 171798875 0.000000e+00 1194.0
20 TraesCS4A01G193700 chr6A 87.251 251 28 4 3677 3927 592809872 592810118 4.250000e-72 283.0
21 TraesCS4A01G193700 chr6A 75.824 182 36 6 6218 6396 555201261 555201437 1.290000e-12 86.1
22 TraesCS4A01G193700 chr3A 94.792 768 31 8 4231 4996 391296979 391297739 0.000000e+00 1188.0
23 TraesCS4A01G193700 chr3A 94.416 770 30 12 4231 4996 391252305 391253065 0.000000e+00 1171.0
24 TraesCS4A01G193700 chr3A 94.278 769 30 12 4231 4996 391274948 391275705 0.000000e+00 1164.0
25 TraesCS4A01G193700 chr3A 95.422 699 25 2 6216 6914 128569414 128570105 0.000000e+00 1107.0
26 TraesCS4A01G193700 chr3A 92.626 773 37 14 4231 4998 552891758 552891001 0.000000e+00 1094.0
27 TraesCS4A01G193700 chr3A 91.701 735 41 11 4270 4995 482064301 482065024 0.000000e+00 1002.0
28 TraesCS4A01G193700 chr3A 96.154 286 10 1 6912 7197 128570005 128570289 3.930000e-127 466.0
29 TraesCS4A01G193700 chr3A 81.699 153 23 4 3453 3602 16217012 16217162 9.800000e-24 122.0
30 TraesCS4A01G193700 chr6D 84.413 1219 172 13 2052 3267 446129488 446128285 0.000000e+00 1182.0
31 TraesCS4A01G193700 chr6D 84.726 419 34 18 4231 4637 55068951 55069351 6.770000e-105 392.0
32 TraesCS4A01G193700 chr6D 86.692 263 29 6 3678 3939 446127913 446127656 3.290000e-73 287.0
33 TraesCS4A01G193700 chr6D 82.043 323 44 12 1053 1363 446130874 446130554 5.540000e-66 263.0
34 TraesCS4A01G193700 chr6D 97.403 77 2 0 3443 3519 446128069 446127993 1.630000e-26 132.0
35 TraesCS4A01G193700 chr5A 94.078 743 24 10 4257 4995 590383466 590384192 0.000000e+00 1110.0
36 TraesCS4A01G193700 chr5A 92.169 779 37 13 4231 4997 354537687 354538453 0.000000e+00 1079.0
37 TraesCS4A01G193700 chr5A 97.222 396 11 0 6519 6914 241528147 241527752 0.000000e+00 671.0
38 TraesCS4A01G193700 chr5A 94.393 321 16 2 6217 6537 241528620 241528302 6.490000e-135 492.0
39 TraesCS4A01G193700 chr5A 94.958 238 12 0 6214 6451 680466844 680466607 2.450000e-99 374.0
40 TraesCS4A01G193700 chr5A 98.204 167 2 1 6912 7078 241527852 241527687 2.540000e-74 291.0
41 TraesCS4A01G193700 chr5A 92.500 80 6 0 3453 3532 607963785 607963864 1.640000e-21 115.0
42 TraesCS4A01G193700 chr5A 91.250 80 7 0 3453 3532 493024035 493024114 7.630000e-20 110.0
43 TraesCS4A01G193700 chr1A 92.477 771 37 11 4231 4996 541833930 541834684 0.000000e+00 1083.0
44 TraesCS4A01G193700 chr1A 89.655 377 20 12 4231 4597 541467761 541467394 5.090000e-126 462.0
45 TraesCS4A01G193700 chr1A 95.475 221 9 1 6216 6436 7825923 7826142 1.150000e-92 351.0
46 TraesCS4A01G193700 chr2A 92.878 337 16 1 6211 6547 564042345 564042673 3.900000e-132 483.0
47 TraesCS4A01G193700 chr2A 84.967 306 34 8 4231 4526 51755006 51755309 4.220000e-77 300.0
48 TraesCS4A01G193700 chr7A 97.701 174 4 0 4051 4224 83785006 83784833 4.220000e-77 300.0
49 TraesCS4A01G193700 chr7A 80.000 90 16 2 6345 6433 127274433 127274521 1.680000e-06 65.8
50 TraesCS4A01G193700 chr5B 97.110 173 5 0 4051 4223 574956617 574956445 7.060000e-75 292.0
51 TraesCS4A01G193700 chr5B 87.500 80 10 0 3453 3532 100177259 100177338 7.690000e-15 93.5
52 TraesCS4A01G193700 chr3D 97.093 172 5 0 4051 4222 422517622 422517793 2.540000e-74 291.0
53 TraesCS4A01G193700 chr3D 74.857 175 38 6 6210 6382 152060418 152060248 2.780000e-09 75.0
54 TraesCS4A01G193700 chr6B 95.028 181 8 1 4051 4231 720714623 720714444 4.250000e-72 283.0
55 TraesCS4A01G193700 chr1D 83.333 120 20 0 6287 6406 270624033 270623914 2.120000e-20 111.0
56 TraesCS4A01G193700 chr1D 75.966 233 46 9 6217 6445 316224039 316223813 2.120000e-20 111.0
57 TraesCS4A01G193700 chr7B 81.522 92 14 3 6297 6387 58642318 58642407 1.000000e-08 73.1
58 TraesCS4A01G193700 chr1B 79.310 87 16 2 6290 6376 5785716 5785800 7.800000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G193700 chr4A 475417550 475424746 7196 True 13291.000000 13291 100.000000 1 7197 1 chr4A.!!$R3 7196
1 TraesCS4A01G193700 chr4A 22732814 22733573 759 True 717.000000 717 84.091000 4231 5002 1 chr4A.!!$R1 771
2 TraesCS4A01G193700 chr4A 455298064 455298762 698 True 294.000000 294 74.646000 6217 6910 1 chr4A.!!$R2 693
3 TraesCS4A01G193700 chr4B 143306395 143311145 4750 False 1853.425000 5524 95.651250 870 6214 4 chr4B.!!$F2 5344
4 TraesCS4A01G193700 chr4B 143140495 143141219 724 False 597.000000 597 81.744000 161 885 1 chr4B.!!$F1 724
5 TraesCS4A01G193700 chr4D 100795194 100799927 4733 False 2498.000000 4257 95.165333 870 6213 3 chr4D.!!$F3 5343
6 TraesCS4A01G193700 chr6A 171798875 171799634 759 True 1194.000000 1194 94.825000 4231 5002 1 chr6A.!!$R1 771
7 TraesCS4A01G193700 chr6A 592808286 592810118 1832 False 798.500000 1314 84.716000 2046 3927 2 chr6A.!!$F2 1881
8 TraesCS4A01G193700 chr3A 391296979 391297739 760 False 1188.000000 1188 94.792000 4231 4996 1 chr3A.!!$F4 765
9 TraesCS4A01G193700 chr3A 391252305 391253065 760 False 1171.000000 1171 94.416000 4231 4996 1 chr3A.!!$F2 765
10 TraesCS4A01G193700 chr3A 391274948 391275705 757 False 1164.000000 1164 94.278000 4231 4996 1 chr3A.!!$F3 765
11 TraesCS4A01G193700 chr3A 552891001 552891758 757 True 1094.000000 1094 92.626000 4231 4998 1 chr3A.!!$R1 767
12 TraesCS4A01G193700 chr3A 482064301 482065024 723 False 1002.000000 1002 91.701000 4270 4995 1 chr3A.!!$F5 725
13 TraesCS4A01G193700 chr3A 128569414 128570289 875 False 786.500000 1107 95.788000 6216 7197 2 chr3A.!!$F6 981
14 TraesCS4A01G193700 chr6D 446127656 446130874 3218 True 466.000000 1182 87.637750 1053 3939 4 chr6D.!!$R1 2886
15 TraesCS4A01G193700 chr5A 590383466 590384192 726 False 1110.000000 1110 94.078000 4257 4995 1 chr5A.!!$F3 738
16 TraesCS4A01G193700 chr5A 354537687 354538453 766 False 1079.000000 1079 92.169000 4231 4997 1 chr5A.!!$F1 766
17 TraesCS4A01G193700 chr5A 241527687 241528620 933 True 484.666667 671 96.606333 6217 7078 3 chr5A.!!$R2 861
18 TraesCS4A01G193700 chr1A 541833930 541834684 754 False 1083.000000 1083 92.477000 4231 4996 1 chr1A.!!$F2 765

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.032815 TTCGTTGCATCACACTCCGA 59.967 50.000 0.00 0.00 0.00 4.55 F
175 176 0.100861 GAGGACCGAGGCTTAGAACG 59.899 60.000 0.00 0.00 0.00 3.95 F
857 864 0.107993 GTAGGCGGTTTGAGGTACCC 60.108 60.000 8.74 0.32 31.75 3.69 F
1511 1569 1.070758 AGAGTAACACCAGGTGCAGTG 59.929 52.381 20.48 2.49 36.98 3.66 F
1982 2857 2.111384 GGAACCTCCACTGCTCATCTA 58.889 52.381 0.00 0.00 36.28 1.98 F
3067 3942 2.871096 TCCAGGTTGTTCCATGGTAC 57.129 50.000 14.25 14.25 39.02 3.34 F
4079 5009 1.161843 GCGGTAAAGCTGTTGCCTTA 58.838 50.000 11.70 0.00 40.80 2.69 F
5495 6585 2.365582 AGTTCGTTGCAGTGTTTCCTT 58.634 42.857 0.00 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1489 1547 0.317160 TGCACCTGGTGTTACTCTCG 59.683 55.000 26.48 0.0 35.75 4.04 R
1511 1569 0.595095 CAACCAGCTTTGAGGCAGTC 59.405 55.000 0.00 0.0 34.17 3.51 R
1960 2835 1.280421 GATGAGCAGTGGAGGTTCCTT 59.720 52.381 0.00 0.0 37.46 3.36 R
2711 3586 1.901591 ACATCTGACCCAGCTTTGTG 58.098 50.000 0.00 0.0 0.00 3.33 R
3154 4029 3.572584 CAAAAGCTTGTCTTCTGATGGC 58.427 45.455 0.00 0.0 32.88 4.40 R
4089 5019 1.529948 AGGACTCGAACCCGTGACA 60.530 57.895 4.92 0.0 37.05 3.58 R
5875 6966 3.442625 ACACAATAGCTACTACTGCGACA 59.557 43.478 0.00 0.0 35.28 4.35 R
6951 8231 0.032515 TATGGAGGGCACGAAGGAGA 60.033 55.000 0.00 0.0 0.00 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.379174 TTCTGAAACAGGCGCTCC 57.621 55.556 7.64 0.00 31.51 4.70
18 19 1.302511 TTCTGAAACAGGCGCTCCC 60.303 57.895 7.64 0.00 31.51 4.30
19 20 3.121030 CTGAAACAGGCGCTCCCG 61.121 66.667 7.64 0.00 39.21 5.14
31 32 3.136123 CTCCCGCACCTTGGCATG 61.136 66.667 0.00 0.00 0.00 4.06
42 43 4.445710 TGGCATGCCCAATCGCCT 62.446 61.111 33.44 0.00 45.13 5.52
43 44 3.149648 GGCATGCCCAATCGCCTT 61.150 61.111 27.24 0.00 41.50 4.35
44 45 2.414594 GCATGCCCAATCGCCTTC 59.585 61.111 6.36 0.00 0.00 3.46
45 46 2.717485 CATGCCCAATCGCCTTCG 59.283 61.111 0.00 0.00 0.00 3.79
46 47 3.211963 ATGCCCAATCGCCTTCGC 61.212 61.111 0.00 0.00 35.26 4.70
49 50 2.438434 CCCAATCGCCTTCGCCTT 60.438 61.111 0.00 0.00 35.26 4.35
50 51 2.764314 CCCAATCGCCTTCGCCTTG 61.764 63.158 0.00 0.00 35.26 3.61
51 52 2.040544 CCAATCGCCTTCGCCTTGT 61.041 57.895 0.00 0.00 35.26 3.16
52 53 1.586154 CCAATCGCCTTCGCCTTGTT 61.586 55.000 0.00 0.00 35.26 2.83
53 54 0.179189 CAATCGCCTTCGCCTTGTTC 60.179 55.000 0.00 0.00 35.26 3.18
54 55 1.635663 AATCGCCTTCGCCTTGTTCG 61.636 55.000 0.00 0.00 35.26 3.95
55 56 2.781595 ATCGCCTTCGCCTTGTTCGT 62.782 55.000 0.00 0.00 35.26 3.85
56 57 2.604174 CGCCTTCGCCTTGTTCGTT 61.604 57.895 0.00 0.00 0.00 3.85
57 58 1.082104 GCCTTCGCCTTGTTCGTTG 60.082 57.895 0.00 0.00 0.00 4.10
58 59 1.082104 CCTTCGCCTTGTTCGTTGC 60.082 57.895 0.00 0.00 0.00 4.17
59 60 1.646540 CTTCGCCTTGTTCGTTGCA 59.353 52.632 0.00 0.00 0.00 4.08
60 61 0.238289 CTTCGCCTTGTTCGTTGCAT 59.762 50.000 0.00 0.00 0.00 3.96
61 62 0.237235 TTCGCCTTGTTCGTTGCATC 59.763 50.000 0.00 0.00 0.00 3.91
62 63 0.882484 TCGCCTTGTTCGTTGCATCA 60.882 50.000 0.00 0.00 0.00 3.07
63 64 0.725784 CGCCTTGTTCGTTGCATCAC 60.726 55.000 0.00 0.00 0.00 3.06
64 65 0.310543 GCCTTGTTCGTTGCATCACA 59.689 50.000 0.00 0.00 0.00 3.58
65 66 1.925946 GCCTTGTTCGTTGCATCACAC 60.926 52.381 0.00 0.00 0.00 3.82
66 67 1.603802 CCTTGTTCGTTGCATCACACT 59.396 47.619 0.00 0.00 0.00 3.55
67 68 2.349817 CCTTGTTCGTTGCATCACACTC 60.350 50.000 0.00 0.00 0.00 3.51
68 69 1.225855 TGTTCGTTGCATCACACTCC 58.774 50.000 0.00 0.00 0.00 3.85
69 70 0.163788 GTTCGTTGCATCACACTCCG 59.836 55.000 0.00 0.00 0.00 4.63
70 71 0.032815 TTCGTTGCATCACACTCCGA 59.967 50.000 0.00 0.00 0.00 4.55
71 72 0.666274 TCGTTGCATCACACTCCGAC 60.666 55.000 0.00 0.00 0.00 4.79
72 73 0.943835 CGTTGCATCACACTCCGACA 60.944 55.000 0.00 0.00 0.00 4.35
73 74 0.792640 GTTGCATCACACTCCGACAG 59.207 55.000 0.00 0.00 0.00 3.51
74 75 0.950555 TTGCATCACACTCCGACAGC 60.951 55.000 0.00 0.00 0.00 4.40
75 76 1.079543 GCATCACACTCCGACAGCT 60.080 57.895 0.00 0.00 0.00 4.24
76 77 1.080995 GCATCACACTCCGACAGCTC 61.081 60.000 0.00 0.00 0.00 4.09
77 78 0.799917 CATCACACTCCGACAGCTCG 60.800 60.000 0.00 0.00 39.83 5.03
78 79 0.960861 ATCACACTCCGACAGCTCGA 60.961 55.000 0.00 0.00 43.06 4.04
79 80 0.960861 TCACACTCCGACAGCTCGAT 60.961 55.000 0.00 0.00 43.06 3.59
80 81 0.799917 CACACTCCGACAGCTCGATG 60.800 60.000 0.00 0.00 43.06 3.84
81 82 1.226802 CACTCCGACAGCTCGATGG 60.227 63.158 0.00 0.00 43.06 3.51
82 83 2.279120 CTCCGACAGCTCGATGGC 60.279 66.667 0.00 0.00 43.06 4.40
92 93 3.288484 TCGATGGCGAGCTGAAGT 58.712 55.556 0.00 0.00 42.51 3.01
93 94 1.153765 TCGATGGCGAGCTGAAGTG 60.154 57.895 0.00 0.00 42.51 3.16
94 95 2.806856 CGATGGCGAGCTGAAGTGC 61.807 63.158 0.00 0.00 40.82 4.40
96 97 1.002868 ATGGCGAGCTGAAGTGCTT 60.003 52.632 0.00 0.00 44.17 3.91
97 98 0.607489 ATGGCGAGCTGAAGTGCTTT 60.607 50.000 0.00 0.00 44.17 3.51
98 99 1.208614 GGCGAGCTGAAGTGCTTTG 59.791 57.895 0.00 0.00 44.17 2.77
99 100 1.208614 GCGAGCTGAAGTGCTTTGG 59.791 57.895 0.00 0.00 44.17 3.28
100 101 1.208614 CGAGCTGAAGTGCTTTGGC 59.791 57.895 0.00 3.26 44.17 4.52
112 113 2.996631 TGCTTTGGCAATTTTTGTGGT 58.003 38.095 0.00 0.00 46.36 4.16
113 114 2.681848 TGCTTTGGCAATTTTTGTGGTG 59.318 40.909 0.00 0.00 46.36 4.17
114 115 2.033174 GCTTTGGCAATTTTTGTGGTGG 59.967 45.455 0.00 0.00 38.54 4.61
115 116 3.539604 CTTTGGCAATTTTTGTGGTGGA 58.460 40.909 0.00 0.00 0.00 4.02
116 117 2.906691 TGGCAATTTTTGTGGTGGAG 57.093 45.000 0.00 0.00 0.00 3.86
117 118 1.202627 TGGCAATTTTTGTGGTGGAGC 60.203 47.619 0.00 0.00 0.00 4.70
118 119 1.511850 GCAATTTTTGTGGTGGAGCC 58.488 50.000 0.00 0.00 37.90 4.70
119 120 1.782044 CAATTTTTGTGGTGGAGCCG 58.218 50.000 0.00 0.00 41.21 5.52
121 122 1.815817 ATTTTTGTGGTGGAGCCGCC 61.816 55.000 12.17 12.17 46.96 6.13
138 139 4.498520 CGTGCATCCGTCTCCGCT 62.499 66.667 0.00 0.00 0.00 5.52
139 140 2.887568 GTGCATCCGTCTCCGCTG 60.888 66.667 0.00 0.00 0.00 5.18
140 141 3.068064 TGCATCCGTCTCCGCTGA 61.068 61.111 0.00 0.00 0.00 4.26
141 142 2.583593 GCATCCGTCTCCGCTGAC 60.584 66.667 0.00 0.00 0.00 3.51
147 148 2.179517 GTCTCCGCTGACGTGAGG 59.820 66.667 3.66 0.00 37.27 3.86
148 149 3.062466 TCTCCGCTGACGTGAGGG 61.062 66.667 12.13 12.13 37.27 4.30
149 150 4.135153 CTCCGCTGACGTGAGGGG 62.135 72.222 28.41 28.41 45.42 4.79
152 153 4.742201 CGCTGACGTGAGGGGGTG 62.742 72.222 11.27 0.00 33.53 4.61
153 154 4.394712 GCTGACGTGAGGGGGTGG 62.395 72.222 3.66 0.00 0.00 4.61
154 155 4.394712 CTGACGTGAGGGGGTGGC 62.395 72.222 0.00 0.00 0.00 5.01
156 157 4.394712 GACGTGAGGGGGTGGCAG 62.395 72.222 0.00 0.00 0.00 4.85
157 158 4.954118 ACGTGAGGGGGTGGCAGA 62.954 66.667 0.00 0.00 0.00 4.26
158 159 4.087892 CGTGAGGGGGTGGCAGAG 62.088 72.222 0.00 0.00 0.00 3.35
159 160 3.721706 GTGAGGGGGTGGCAGAGG 61.722 72.222 0.00 0.00 0.00 3.69
165 166 3.775654 GGGTGGCAGAGGACCGAG 61.776 72.222 0.00 0.00 32.48 4.63
166 167 3.775654 GGTGGCAGAGGACCGAGG 61.776 72.222 0.00 0.00 0.00 4.63
170 171 2.058595 GGCAGAGGACCGAGGCTTA 61.059 63.158 0.00 0.00 0.00 3.09
175 176 0.100861 GAGGACCGAGGCTTAGAACG 59.899 60.000 0.00 0.00 0.00 3.95
177 178 1.214589 GACCGAGGCTTAGAACGCA 59.785 57.895 0.00 0.00 0.00 5.24
180 181 0.179111 CCGAGGCTTAGAACGCATCA 60.179 55.000 0.00 0.00 38.01 3.07
195 196 1.151450 ATCAATGGGATCCACCGGC 59.849 57.895 15.23 0.00 35.80 6.13
196 197 2.680974 ATCAATGGGATCCACCGGCG 62.681 60.000 15.23 0.00 35.80 6.46
197 198 4.875713 AATGGGATCCACCGGCGC 62.876 66.667 15.23 0.00 35.80 6.53
226 227 4.854924 CCCGACGCATGGCCATCA 62.855 66.667 17.61 0.00 0.00 3.07
228 229 3.576356 CGACGCATGGCCATCACC 61.576 66.667 17.61 6.37 0.00 4.02
237 238 4.176752 GCCATCACCTCCCCCGTC 62.177 72.222 0.00 0.00 0.00 4.79
239 240 4.530857 CATCACCTCCCCCGTCGC 62.531 72.222 0.00 0.00 0.00 5.19
248 249 4.742201 CCCCGTCGCTGTCCTGTG 62.742 72.222 0.00 0.00 0.00 3.66
251 252 2.430921 CGTCGCTGTCCTGTGTCC 60.431 66.667 0.00 0.00 0.00 4.02
255 256 1.204941 GTCGCTGTCCTGTGTCCTATT 59.795 52.381 0.00 0.00 0.00 1.73
256 257 1.476891 TCGCTGTCCTGTGTCCTATTC 59.523 52.381 0.00 0.00 0.00 1.75
277 278 3.680786 CGTCCTGTCCGTGCCAGA 61.681 66.667 0.00 0.00 31.38 3.86
279 280 2.203640 TCCTGTCCGTGCCAGAGT 60.204 61.111 0.00 0.00 31.38 3.24
280 281 2.047844 CCTGTCCGTGCCAGAGTG 60.048 66.667 0.00 0.00 31.38 3.51
291 292 2.262915 CAGAGTGGGCACGAGGAC 59.737 66.667 0.00 0.00 36.20 3.85
311 312 0.390603 CCAATGGTGCCTTCGTACGA 60.391 55.000 15.28 15.28 0.00 3.43
313 314 1.327460 CAATGGTGCCTTCGTACGATG 59.673 52.381 20.27 20.61 0.00 3.84
317 318 0.108992 GTGCCTTCGTACGATGTCCA 60.109 55.000 20.27 16.23 0.00 4.02
323 324 1.170442 TCGTACGATGTCCAGAGCAA 58.830 50.000 15.28 0.00 0.00 3.91
355 356 1.377536 GAGGAGCAGATTGAGGTTGC 58.622 55.000 0.00 0.00 38.09 4.17
360 361 2.436646 AGATTGAGGTTGCGGGCG 60.437 61.111 0.00 0.00 0.00 6.13
410 412 3.633094 GACTGGAGCTGCGCGAAGA 62.633 63.158 21.09 0.00 0.00 2.87
423 425 1.446272 CGAAGAGCGTGAGGGTTCC 60.446 63.158 0.00 0.00 34.64 3.62
425 427 3.591254 AAGAGCGTGAGGGTTCCGC 62.591 63.158 0.00 0.00 40.78 5.54
466 468 2.686106 GGGTAACGGGAGAGGGCA 60.686 66.667 0.00 0.00 37.60 5.36
467 469 2.070650 GGGTAACGGGAGAGGGCAT 61.071 63.158 0.00 0.00 37.60 4.40
469 471 1.335132 GGTAACGGGAGAGGGCATGA 61.335 60.000 0.00 0.00 0.00 3.07
471 473 1.065709 GTAACGGGAGAGGGCATGAAA 60.066 52.381 0.00 0.00 0.00 2.69
472 474 0.322546 AACGGGAGAGGGCATGAAAC 60.323 55.000 0.00 0.00 0.00 2.78
474 476 1.691219 GGGAGAGGGCATGAAACCA 59.309 57.895 0.00 0.00 0.00 3.67
483 485 0.449388 GCATGAAACCAGAGCTTCCG 59.551 55.000 0.00 0.00 0.00 4.30
494 496 2.125106 GCTTCCGCTACCACCCTG 60.125 66.667 0.00 0.00 0.00 4.45
517 519 1.860950 CCAAGATGAACCGATGTAGCG 59.139 52.381 0.00 0.00 0.00 4.26
519 521 0.595053 AGATGAACCGATGTAGCGCG 60.595 55.000 0.00 0.00 0.00 6.86
548 550 2.049063 GAGCTCCTGCACGTCGTT 60.049 61.111 0.87 0.00 42.74 3.85
550 552 2.355837 GCTCCTGCACGTCGTTGA 60.356 61.111 0.00 0.00 39.41 3.18
598 600 3.108289 CACTGCTGCCGTCACTCG 61.108 66.667 0.00 0.00 39.52 4.18
603 605 4.662961 CTGCCGTCACTCGCCACA 62.663 66.667 0.00 0.00 38.35 4.17
604 606 3.939837 CTGCCGTCACTCGCCACAT 62.940 63.158 0.00 0.00 38.35 3.21
629 631 2.496070 CGACTGGAATTGGAGTGGACTA 59.504 50.000 0.00 0.00 0.00 2.59
634 636 2.618053 GAATTGGAGTGGACTACGGTG 58.382 52.381 0.00 0.00 0.00 4.94
664 666 8.328758 GGTTCATCTGGATTGGGATTATATGTA 58.671 37.037 0.00 0.00 0.00 2.29
669 671 7.492552 TCTGGATTGGGATTATATGTAGGGTA 58.507 38.462 0.00 0.00 0.00 3.69
681 683 0.733150 GTAGGGTACGTACGGGTCAC 59.267 60.000 21.06 10.25 39.90 3.67
701 703 4.077184 TGGGCCGAGCTAACGTGG 62.077 66.667 0.00 0.00 0.00 4.94
705 707 2.571757 CCGAGCTAACGTGGCAGA 59.428 61.111 14.64 0.00 0.00 4.26
706 708 1.805945 CCGAGCTAACGTGGCAGAC 60.806 63.158 14.64 6.20 0.00 3.51
707 709 1.805945 CGAGCTAACGTGGCAGACC 60.806 63.158 14.64 2.43 0.00 3.85
708 710 1.592223 GAGCTAACGTGGCAGACCT 59.408 57.895 14.64 0.00 36.63 3.85
710 712 1.004918 GCTAACGTGGCAGACCTGT 60.005 57.895 8.60 0.00 36.63 4.00
712 714 0.603569 CTAACGTGGCAGACCTGTCT 59.396 55.000 3.16 0.00 41.37 3.41
724 726 2.258591 CTGTCTGGACACGTCGGG 59.741 66.667 0.00 0.00 36.21 5.14
740 742 1.544825 CGGGGCCTCGACATATCCAT 61.545 60.000 24.25 0.00 0.00 3.41
745 747 2.428890 GGCCTCGACATATCCATCCTAG 59.571 54.545 0.00 0.00 0.00 3.02
752 754 6.016555 TCGACATATCCATCCTAGATTTGGA 58.983 40.000 9.72 9.72 43.37 3.53
766 768 7.181665 TCCTAGATTTGGATTGGATATGAGAGG 59.818 40.741 0.00 0.00 0.00 3.69
772 774 2.627515 TTGGATATGAGAGGTGCTGC 57.372 50.000 0.00 0.00 0.00 5.25
780 782 0.321671 GAGAGGTGCTGCACAACCTA 59.678 55.000 31.35 0.00 36.21 3.08
782 784 0.321671 GAGGTGCTGCACAACCTAGA 59.678 55.000 31.35 0.00 36.21 2.43
787 789 2.618709 GTGCTGCACAACCTAGAAGTTT 59.381 45.455 26.70 0.00 34.08 2.66
805 807 1.415672 TTGGAGCCGGTTTGAGGAGT 61.416 55.000 1.90 0.00 0.00 3.85
807 809 1.545706 GGAGCCGGTTTGAGGAGTCT 61.546 60.000 1.90 0.00 0.00 3.24
818 820 1.076632 AGGAGTCTAGCTGGGTCGG 60.077 63.158 0.00 0.00 0.00 4.79
819 821 1.380112 GGAGTCTAGCTGGGTCGGT 60.380 63.158 0.00 0.00 0.00 4.69
820 822 0.971447 GGAGTCTAGCTGGGTCGGTT 60.971 60.000 0.00 0.00 0.00 4.44
821 823 0.896226 GAGTCTAGCTGGGTCGGTTT 59.104 55.000 0.00 0.00 0.00 3.27
822 824 1.275573 GAGTCTAGCTGGGTCGGTTTT 59.724 52.381 0.00 0.00 0.00 2.43
857 864 0.107993 GTAGGCGGTTTGAGGTACCC 60.108 60.000 8.74 0.32 31.75 3.69
859 866 2.435410 GCGGTTTGAGGTACCCGG 60.435 66.667 8.74 0.00 40.74 5.73
873 880 2.418083 CCCGGCAAGGAGGCAAATC 61.418 63.158 0.00 0.00 45.00 2.17
891 898 1.500108 TCGAACGGTTGTATTTGCGT 58.500 45.000 0.00 0.00 0.00 5.24
897 904 2.809119 ACGGTTGTATTTGCGTCAATCA 59.191 40.909 0.00 0.00 0.00 2.57
981 988 1.395826 CGGCTGACCCAAAAACCCAA 61.396 55.000 0.00 0.00 0.00 4.12
1011 1018 2.785425 GGCACCCAAATCATCGGCC 61.785 63.158 0.00 0.00 0.00 6.13
1037 1044 3.059982 CAACCCGAGCTGACCTGA 58.940 61.111 0.00 0.00 0.00 3.86
1038 1045 1.079543 CAACCCGAGCTGACCTGAG 60.080 63.158 0.00 0.00 0.00 3.35
1039 1046 2.286523 AACCCGAGCTGACCTGAGG 61.287 63.158 0.00 0.00 0.00 3.86
1511 1569 1.070758 AGAGTAACACCAGGTGCAGTG 59.929 52.381 20.48 2.49 36.98 3.66
1851 2726 2.816087 TCCTCATGAAAAGTGCTCTTGC 59.184 45.455 1.02 0.00 40.20 4.01
1954 2829 8.818141 ATGATAATTACACGGTCATGAACTAG 57.182 34.615 9.52 3.42 0.00 2.57
1957 2832 4.713824 TTACACGGTCATGAACTAGGAG 57.286 45.455 9.52 0.00 0.00 3.69
1960 2835 4.084287 ACACGGTCATGAACTAGGAGTAA 58.916 43.478 9.52 0.00 0.00 2.24
1982 2857 2.111384 GGAACCTCCACTGCTCATCTA 58.889 52.381 0.00 0.00 36.28 1.98
2024 2899 6.649973 TGCCTTGTATGAATGTTTTGGAATTG 59.350 34.615 0.00 0.00 0.00 2.32
2050 2925 7.412781 GCTGTTAAGATCATTCTGTTCTGTCTG 60.413 40.741 0.00 0.00 30.72 3.51
2711 3586 6.072508 TGAGAAAGGCATAGTTGACAATGTTC 60.073 38.462 0.00 0.00 30.96 3.18
3067 3942 2.871096 TCCAGGTTGTTCCATGGTAC 57.129 50.000 14.25 14.25 39.02 3.34
3364 4252 2.682856 GTCTTCACTTGTTGCTTGACCA 59.317 45.455 0.00 0.00 0.00 4.02
3574 4504 4.701651 CCTGAAGCTGATCCATTGTTTGTA 59.298 41.667 0.00 0.00 0.00 2.41
3663 4593 5.414765 AGGGAAAGAAAAACGCTTACTATGG 59.585 40.000 0.00 0.00 0.00 2.74
3688 4618 6.017934 GCGGAGATGTGAAATATTCTGCTTTA 60.018 38.462 0.00 0.00 34.85 1.85
4055 4985 4.705110 TCTGTTGGATCTGAAACCTTGA 57.295 40.909 0.00 0.00 0.00 3.02
4079 5009 1.161843 GCGGTAAAGCTGTTGCCTTA 58.838 50.000 11.70 0.00 40.80 2.69
4089 5019 2.954318 GCTGTTGCCTTATGACCATGAT 59.046 45.455 0.00 0.00 0.00 2.45
4279 5209 4.786454 TGCCCTAGTCTAATTTACAACCCT 59.214 41.667 0.00 0.00 0.00 4.34
4998 5971 8.150945 GGGTTGAAATATGCACTTCTCTCTATA 58.849 37.037 0.00 0.00 0.00 1.31
5055 6028 7.982354 AGTATTGTACTAGGAGAGTTCAAATGC 59.018 37.037 0.00 0.00 45.27 3.56
5148 6236 4.101430 ACAAAAAGGAACGGAGGTAGTACA 59.899 41.667 2.06 0.00 0.00 2.90
5247 6335 3.054875 TCTGCCAGCAGTACAGATTCAAT 60.055 43.478 18.61 0.00 43.96 2.57
5254 6342 5.791974 CAGCAGTACAGATTCAATTGAAACG 59.208 40.000 23.91 18.02 37.61 3.60
5285 6373 5.160607 TCCTTCGTTTCATCAACCATACT 57.839 39.130 0.00 0.00 30.65 2.12
5486 6576 3.309682 TCAGTCTCAAAAGTTCGTTGCAG 59.690 43.478 0.00 0.00 0.00 4.41
5495 6585 2.365582 AGTTCGTTGCAGTGTTTCCTT 58.634 42.857 0.00 0.00 0.00 3.36
5587 6678 5.120054 TCATGGTGTTGAATCATCCATCT 57.880 39.130 10.53 0.00 36.86 2.90
5689 6780 5.715279 ACACATCTCACTAGCTTTACTGGTA 59.285 40.000 0.00 0.00 38.17 3.25
5730 6821 6.857964 CACAGCTTAAACATTTGTCTAACCAG 59.142 38.462 0.00 0.00 0.00 4.00
5875 6966 7.335924 TCAAAGCTACTACTCAAAGTTGTGTTT 59.664 33.333 4.27 0.76 35.14 2.83
6035 7129 1.037030 TGCATCGGGGCCATCTTTTC 61.037 55.000 4.39 0.00 0.00 2.29
6076 7170 1.005215 AGAAGATTCTGCCCCAGTTGG 59.995 52.381 0.00 0.00 35.89 3.77
6131 7225 4.243270 CGGTTTGTACTCCTTTCTACAGG 58.757 47.826 0.00 0.00 34.86 4.00
6214 7315 5.297776 CGAGAAATGCATCCTTATCCTTGTT 59.702 40.000 0.00 0.00 0.00 2.83
6215 7316 6.183360 CGAGAAATGCATCCTTATCCTTGTTT 60.183 38.462 0.00 0.00 0.00 2.83
6216 7317 7.486407 AGAAATGCATCCTTATCCTTGTTTT 57.514 32.000 0.00 0.00 0.00 2.43
6217 7318 7.910584 AGAAATGCATCCTTATCCTTGTTTTT 58.089 30.769 0.00 0.00 0.00 1.94
6238 7339 4.997905 TTTTTCTGAGACATTCTCGCTG 57.002 40.909 0.00 0.00 46.25 5.18
6252 7353 3.620488 TCTCGCTGGGCTTTATTCAAAT 58.380 40.909 0.00 0.00 0.00 2.32
6341 7442 4.016444 CCCTAAAGAAAGTGCATGCCTAA 58.984 43.478 16.68 0.00 0.00 2.69
6357 7458 2.678190 GCCTAACGAGATTGTGAGCCTT 60.678 50.000 0.00 0.00 0.00 4.35
6419 7520 4.264145 CAGTAAAAGAACGAGAGCGATCTG 59.736 45.833 8.50 2.98 46.96 2.90
6426 7527 3.238108 ACGAGAGCGATCTGTGATTTT 57.762 42.857 8.50 0.00 41.64 1.82
6451 7552 3.459378 GATTGCAGCATGTCCGGCG 62.459 63.158 0.00 0.00 39.31 6.46
6477 7581 4.383880 CGATCCCTGCTTGATATCATCCAT 60.384 45.833 6.17 0.00 0.00 3.41
6629 7906 3.261580 GCACCCAAAAATACTCCATTGC 58.738 45.455 0.00 0.00 0.00 3.56
6637 7914 6.599244 CCAAAAATACTCCATTGCTGTCTCTA 59.401 38.462 0.00 0.00 0.00 2.43
6675 7952 8.090788 ACGGCTCCCATATTATCATTTAGTAT 57.909 34.615 0.00 0.00 0.00 2.12
6790 8070 4.843728 TCGCTAGAATTTGAATGTCCCTT 58.156 39.130 0.00 0.00 0.00 3.95
6859 8139 3.663198 ACCCTCATGAATAGCTCTCCTT 58.337 45.455 0.00 0.00 0.00 3.36
6905 8185 3.049674 CCACCATGCGCGTGAACT 61.050 61.111 30.68 9.75 32.77 3.01
6906 8186 2.476051 CACCATGCGCGTGAACTC 59.524 61.111 30.68 0.00 32.77 3.01
6907 8187 2.742372 ACCATGCGCGTGAACTCC 60.742 61.111 30.68 0.00 0.00 3.85
6908 8188 2.434884 CCATGCGCGTGAACTCCT 60.435 61.111 30.68 0.00 0.00 3.69
6909 8189 2.456119 CCATGCGCGTGAACTCCTC 61.456 63.158 30.68 0.00 0.00 3.71
6910 8190 1.737735 CATGCGCGTGAACTCCTCA 60.738 57.895 25.38 0.00 0.00 3.86
6911 8191 1.086067 CATGCGCGTGAACTCCTCAT 61.086 55.000 25.38 0.00 36.14 2.90
6912 8192 1.086067 ATGCGCGTGAACTCCTCATG 61.086 55.000 8.43 0.00 43.07 3.07
6913 8193 1.446099 GCGCGTGAACTCCTCATGA 60.446 57.895 8.43 0.00 42.87 3.07
6914 8194 0.807667 GCGCGTGAACTCCTCATGAT 60.808 55.000 8.43 0.00 42.87 2.45
6915 8195 1.645034 CGCGTGAACTCCTCATGATT 58.355 50.000 0.00 0.00 42.87 2.57
6916 8196 2.002586 CGCGTGAACTCCTCATGATTT 58.997 47.619 0.00 0.00 42.87 2.17
6917 8197 2.222886 CGCGTGAACTCCTCATGATTTG 60.223 50.000 0.00 0.00 42.87 2.32
6918 8198 2.476854 GCGTGAACTCCTCATGATTTGC 60.477 50.000 0.00 0.00 42.87 3.68
6919 8199 2.743664 CGTGAACTCCTCATGATTTGCA 59.256 45.455 0.00 0.00 42.87 4.08
6920 8200 3.189080 CGTGAACTCCTCATGATTTGCAA 59.811 43.478 0.00 0.00 42.87 4.08
6921 8201 4.479619 GTGAACTCCTCATGATTTGCAAC 58.520 43.478 0.00 0.00 36.14 4.17
6922 8202 3.189080 TGAACTCCTCATGATTTGCAACG 59.811 43.478 0.00 0.00 0.00 4.10
6923 8203 2.086869 ACTCCTCATGATTTGCAACGG 58.913 47.619 0.00 0.00 0.00 4.44
6924 8204 2.290260 ACTCCTCATGATTTGCAACGGA 60.290 45.455 0.00 0.00 0.00 4.69
6925 8205 2.083774 TCCTCATGATTTGCAACGGAC 58.916 47.619 0.00 0.00 0.00 4.79
6926 8206 2.086869 CCTCATGATTTGCAACGGACT 58.913 47.619 0.00 0.00 0.00 3.85
6927 8207 2.159476 CCTCATGATTTGCAACGGACTG 60.159 50.000 0.00 0.00 0.00 3.51
6928 8208 2.485426 CTCATGATTTGCAACGGACTGT 59.515 45.455 0.00 0.00 0.00 3.55
6929 8209 2.483877 TCATGATTTGCAACGGACTGTC 59.516 45.455 0.00 0.00 0.00 3.51
6930 8210 1.960417 TGATTTGCAACGGACTGTCA 58.040 45.000 10.38 0.00 0.00 3.58
6931 8211 2.503331 TGATTTGCAACGGACTGTCAT 58.497 42.857 10.38 0.00 0.00 3.06
6932 8212 3.669536 TGATTTGCAACGGACTGTCATA 58.330 40.909 10.38 0.00 0.00 2.15
6933 8213 4.260985 TGATTTGCAACGGACTGTCATAT 58.739 39.130 10.38 0.00 0.00 1.78
6934 8214 5.423886 TGATTTGCAACGGACTGTCATATA 58.576 37.500 10.38 0.00 0.00 0.86
6935 8215 6.054941 TGATTTGCAACGGACTGTCATATAT 58.945 36.000 10.38 0.00 0.00 0.86
6936 8216 7.213678 TGATTTGCAACGGACTGTCATATATA 58.786 34.615 10.38 0.00 0.00 0.86
6937 8217 6.838198 TTTGCAACGGACTGTCATATATAC 57.162 37.500 10.38 0.00 0.00 1.47
6938 8218 4.878439 TGCAACGGACTGTCATATATACC 58.122 43.478 10.38 0.00 0.00 2.73
6939 8219 4.243270 GCAACGGACTGTCATATATACCC 58.757 47.826 10.38 0.00 0.00 3.69
6940 8220 4.021368 GCAACGGACTGTCATATATACCCT 60.021 45.833 10.38 0.00 0.00 4.34
6941 8221 5.710984 CAACGGACTGTCATATATACCCTC 58.289 45.833 10.38 0.00 0.00 4.30
6942 8222 4.994282 ACGGACTGTCATATATACCCTCA 58.006 43.478 10.38 0.00 0.00 3.86
6943 8223 5.580998 ACGGACTGTCATATATACCCTCAT 58.419 41.667 10.38 0.00 0.00 2.90
6944 8224 5.419155 ACGGACTGTCATATATACCCTCATG 59.581 44.000 10.38 0.00 0.00 3.07
6945 8225 5.652452 CGGACTGTCATATATACCCTCATGA 59.348 44.000 10.38 0.00 0.00 3.07
6946 8226 6.152831 CGGACTGTCATATATACCCTCATGAA 59.847 42.308 10.38 0.00 0.00 2.57
6947 8227 7.147828 CGGACTGTCATATATACCCTCATGAAT 60.148 40.741 10.38 0.00 0.00 2.57
6948 8228 9.201989 GGACTGTCATATATACCCTCATGAATA 57.798 37.037 10.38 0.00 0.00 1.75
6950 8230 8.700051 ACTGTCATATATACCCTCATGAATAGC 58.300 37.037 0.00 0.00 0.00 2.97
6951 8231 8.844865 TGTCATATATACCCTCATGAATAGCT 57.155 34.615 0.00 0.00 0.00 3.32
6952 8232 8.918116 TGTCATATATACCCTCATGAATAGCTC 58.082 37.037 0.00 0.00 0.00 4.09
6953 8233 9.142014 GTCATATATACCCTCATGAATAGCTCT 57.858 37.037 0.00 0.00 0.00 4.09
6954 8234 9.360901 TCATATATACCCTCATGAATAGCTCTC 57.639 37.037 0.00 0.00 0.00 3.20
6955 8235 8.584157 CATATATACCCTCATGAATAGCTCTCC 58.416 40.741 0.00 0.00 0.00 3.71
6956 8236 3.342926 ACCCTCATGAATAGCTCTCCT 57.657 47.619 0.00 0.00 0.00 3.69
6957 8237 3.663198 ACCCTCATGAATAGCTCTCCTT 58.337 45.455 0.00 0.00 0.00 3.36
6958 8238 3.645687 ACCCTCATGAATAGCTCTCCTTC 59.354 47.826 0.00 0.00 0.00 3.46
6959 8239 3.305950 CCCTCATGAATAGCTCTCCTTCG 60.306 52.174 0.00 0.00 0.00 3.79
6960 8240 3.320541 CCTCATGAATAGCTCTCCTTCGT 59.679 47.826 0.00 0.00 0.00 3.85
6961 8241 4.297510 CTCATGAATAGCTCTCCTTCGTG 58.702 47.826 0.00 1.85 37.29 4.35
6962 8242 2.586258 TGAATAGCTCTCCTTCGTGC 57.414 50.000 0.00 0.00 0.00 5.34
6963 8243 1.137086 TGAATAGCTCTCCTTCGTGCC 59.863 52.381 0.00 0.00 0.00 5.01
6964 8244 0.466124 AATAGCTCTCCTTCGTGCCC 59.534 55.000 0.00 0.00 0.00 5.36
6965 8245 0.397816 ATAGCTCTCCTTCGTGCCCT 60.398 55.000 0.00 0.00 0.00 5.19
6966 8246 1.038130 TAGCTCTCCTTCGTGCCCTC 61.038 60.000 0.00 0.00 0.00 4.30
6967 8247 2.896443 CTCTCCTTCGTGCCCTCC 59.104 66.667 0.00 0.00 0.00 4.30
6968 8248 1.984570 CTCTCCTTCGTGCCCTCCA 60.985 63.158 0.00 0.00 0.00 3.86
6969 8249 1.306141 TCTCCTTCGTGCCCTCCAT 60.306 57.895 0.00 0.00 0.00 3.41
6970 8250 0.032515 TCTCCTTCGTGCCCTCCATA 60.033 55.000 0.00 0.00 0.00 2.74
6971 8251 1.051812 CTCCTTCGTGCCCTCCATAT 58.948 55.000 0.00 0.00 0.00 1.78
6972 8252 1.001406 CTCCTTCGTGCCCTCCATATC 59.999 57.143 0.00 0.00 0.00 1.63
6973 8253 0.319900 CCTTCGTGCCCTCCATATCG 60.320 60.000 0.00 0.00 0.00 2.92
6974 8254 0.946221 CTTCGTGCCCTCCATATCGC 60.946 60.000 0.00 0.00 0.00 4.58
6975 8255 2.357517 CGTGCCCTCCATATCGCC 60.358 66.667 0.00 0.00 0.00 5.54
6976 8256 2.032681 GTGCCCTCCATATCGCCC 59.967 66.667 0.00 0.00 0.00 6.13
6977 8257 2.447572 TGCCCTCCATATCGCCCA 60.448 61.111 0.00 0.00 0.00 5.36
6978 8258 2.075566 TGCCCTCCATATCGCCCAA 61.076 57.895 0.00 0.00 0.00 4.12
6979 8259 1.150536 GCCCTCCATATCGCCCAAA 59.849 57.895 0.00 0.00 0.00 3.28
6980 8260 0.890996 GCCCTCCATATCGCCCAAAG 60.891 60.000 0.00 0.00 0.00 2.77
6981 8261 0.474184 CCCTCCATATCGCCCAAAGT 59.526 55.000 0.00 0.00 0.00 2.66
6982 8262 1.597742 CCTCCATATCGCCCAAAGTG 58.402 55.000 0.00 0.00 0.00 3.16
6983 8263 1.134098 CCTCCATATCGCCCAAAGTGT 60.134 52.381 0.00 0.00 0.00 3.55
6984 8264 2.213499 CTCCATATCGCCCAAAGTGTC 58.787 52.381 0.00 0.00 0.00 3.67
6985 8265 1.557371 TCCATATCGCCCAAAGTGTCA 59.443 47.619 0.00 0.00 0.00 3.58
6986 8266 1.670811 CCATATCGCCCAAAGTGTCAC 59.329 52.381 0.00 0.00 0.00 3.67
6987 8267 1.670811 CATATCGCCCAAAGTGTCACC 59.329 52.381 0.00 0.00 0.00 4.02
6988 8268 0.687920 TATCGCCCAAAGTGTCACCA 59.312 50.000 0.00 0.00 0.00 4.17
6989 8269 0.889186 ATCGCCCAAAGTGTCACCAC 60.889 55.000 0.00 0.00 42.17 4.16
6990 8270 2.551912 CGCCCAAAGTGTCACCACC 61.552 63.158 0.00 0.00 42.88 4.61
6991 8271 1.454847 GCCCAAAGTGTCACCACCA 60.455 57.895 0.00 0.00 42.88 4.17
6992 8272 0.827507 GCCCAAAGTGTCACCACCAT 60.828 55.000 0.00 0.00 42.88 3.55
6993 8273 0.961019 CCCAAAGTGTCACCACCATG 59.039 55.000 0.00 0.00 42.88 3.66
6994 8274 0.314935 CCAAAGTGTCACCACCATGC 59.685 55.000 0.00 0.00 42.88 4.06
6995 8275 0.040157 CAAAGTGTCACCACCATGCG 60.040 55.000 0.00 0.00 42.88 4.73
6996 8276 1.795170 AAAGTGTCACCACCATGCGC 61.795 55.000 0.00 0.00 42.88 6.09
6997 8277 4.088762 GTGTCACCACCATGCGCG 62.089 66.667 0.00 0.00 35.44 6.86
6998 8278 4.617520 TGTCACCACCATGCGCGT 62.618 61.111 8.43 0.00 0.00 6.01
6999 8279 4.088762 GTCACCACCATGCGCGTG 62.089 66.667 22.83 22.83 0.00 5.34
7000 8280 4.306967 TCACCACCATGCGCGTGA 62.307 61.111 30.68 19.31 32.77 4.35
7001 8281 3.353029 CACCACCATGCGCGTGAA 61.353 61.111 30.68 0.00 32.77 3.18
7002 8282 3.353836 ACCACCATGCGCGTGAAC 61.354 61.111 30.68 0.00 32.77 3.18
7043 8323 1.614996 TGCATCGTGAACACCCAATT 58.385 45.000 0.00 0.00 0.00 2.32
7084 8364 8.586570 TCAAATTATCACACATTGTTTCAACC 57.413 30.769 0.00 0.00 0.00 3.77
7092 8372 4.099881 ACACATTGTTTCAACCAGCTCATT 59.900 37.500 0.00 0.00 0.00 2.57
7103 8383 8.806429 TTCAACCAGCTCATTAGATGATAAAA 57.194 30.769 0.00 0.00 41.85 1.52
7109 8389 7.067372 CCAGCTCATTAGATGATAAAAACCACA 59.933 37.037 0.00 0.00 41.85 4.17
7163 8443 1.834856 CTTCCAGCTGTCCTCTGCCA 61.835 60.000 13.81 0.00 38.92 4.92
7183 8463 1.959042 AACAGAAGGCACAGACACAG 58.041 50.000 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.121030 CGGGAGCGCCTGTTTCAG 61.121 66.667 7.23 0.00 35.70 3.02
14 15 3.136123 CATGCCAAGGTGCGGGAG 61.136 66.667 0.00 0.00 0.00 4.30
19 20 2.582734 GATTGGGCATGCCAAGGTGC 62.583 60.000 36.56 19.29 40.55 5.01
20 21 1.518774 GATTGGGCATGCCAAGGTG 59.481 57.895 36.56 0.00 37.98 4.00
21 22 2.053865 CGATTGGGCATGCCAAGGT 61.054 57.895 36.56 19.25 37.98 3.50
22 23 2.809706 CGATTGGGCATGCCAAGG 59.190 61.111 36.56 19.43 37.98 3.61
23 24 2.105528 GCGATTGGGCATGCCAAG 59.894 61.111 36.56 22.14 37.98 3.61
24 25 3.459965 GGCGATTGGGCATGCCAA 61.460 61.111 36.56 25.95 46.76 4.52
27 28 2.414594 GAAGGCGATTGGGCATGC 59.585 61.111 9.90 9.90 45.36 4.06
28 29 2.717485 CGAAGGCGATTGGGCATG 59.283 61.111 0.00 0.00 45.36 4.06
29 30 3.211963 GCGAAGGCGATTGGGCAT 61.212 61.111 0.00 0.00 45.36 4.40
40 41 1.082104 GCAACGAACAAGGCGAAGG 60.082 57.895 0.00 0.00 0.00 3.46
41 42 0.238289 ATGCAACGAACAAGGCGAAG 59.762 50.000 0.00 0.00 0.00 3.79
42 43 0.237235 GATGCAACGAACAAGGCGAA 59.763 50.000 0.00 0.00 0.00 4.70
43 44 0.882484 TGATGCAACGAACAAGGCGA 60.882 50.000 0.00 0.00 0.00 5.54
44 45 0.725784 GTGATGCAACGAACAAGGCG 60.726 55.000 0.00 0.00 0.00 5.52
45 46 0.310543 TGTGATGCAACGAACAAGGC 59.689 50.000 0.00 0.00 0.00 4.35
46 47 1.603802 AGTGTGATGCAACGAACAAGG 59.396 47.619 0.00 0.00 0.00 3.61
47 48 2.349817 GGAGTGTGATGCAACGAACAAG 60.350 50.000 0.00 0.00 0.00 3.16
48 49 1.601903 GGAGTGTGATGCAACGAACAA 59.398 47.619 0.00 0.00 0.00 2.83
49 50 1.225855 GGAGTGTGATGCAACGAACA 58.774 50.000 0.00 0.00 0.00 3.18
50 51 0.163788 CGGAGTGTGATGCAACGAAC 59.836 55.000 0.00 0.00 0.00 3.95
51 52 0.032815 TCGGAGTGTGATGCAACGAA 59.967 50.000 0.00 0.00 30.76 3.85
52 53 0.666274 GTCGGAGTGTGATGCAACGA 60.666 55.000 0.00 0.00 0.00 3.85
53 54 0.943835 TGTCGGAGTGTGATGCAACG 60.944 55.000 0.00 0.00 0.00 4.10
54 55 0.792640 CTGTCGGAGTGTGATGCAAC 59.207 55.000 0.00 0.00 0.00 4.17
55 56 0.950555 GCTGTCGGAGTGTGATGCAA 60.951 55.000 0.00 0.00 0.00 4.08
56 57 1.374631 GCTGTCGGAGTGTGATGCA 60.375 57.895 0.00 0.00 0.00 3.96
57 58 1.079543 AGCTGTCGGAGTGTGATGC 60.080 57.895 0.00 0.00 0.00 3.91
58 59 0.799917 CGAGCTGTCGGAGTGTGATG 60.800 60.000 0.00 0.00 42.87 3.07
59 60 0.960861 TCGAGCTGTCGGAGTGTGAT 60.961 55.000 0.00 0.00 46.80 3.06
60 61 0.960861 ATCGAGCTGTCGGAGTGTGA 60.961 55.000 0.00 0.00 46.80 3.58
61 62 0.799917 CATCGAGCTGTCGGAGTGTG 60.800 60.000 0.00 0.00 46.80 3.82
62 63 1.508545 CATCGAGCTGTCGGAGTGT 59.491 57.895 0.00 0.00 46.80 3.55
63 64 1.226802 CCATCGAGCTGTCGGAGTG 60.227 63.158 0.00 0.00 46.80 3.51
64 65 3.069980 GCCATCGAGCTGTCGGAGT 62.070 63.158 0.00 0.00 46.80 3.85
65 66 2.279120 GCCATCGAGCTGTCGGAG 60.279 66.667 0.00 0.00 46.80 4.63
66 67 4.193334 CGCCATCGAGCTGTCGGA 62.193 66.667 0.00 0.00 46.80 4.55
67 68 4.193334 TCGCCATCGAGCTGTCGG 62.193 66.667 0.00 0.00 46.80 4.79
75 76 1.153765 CACTTCAGCTCGCCATCGA 60.154 57.895 0.00 0.00 43.28 3.59
76 77 2.806856 GCACTTCAGCTCGCCATCG 61.807 63.158 0.00 0.00 0.00 3.84
77 78 1.023513 AAGCACTTCAGCTCGCCATC 61.024 55.000 0.00 0.00 45.89 3.51
78 79 0.607489 AAAGCACTTCAGCTCGCCAT 60.607 50.000 0.00 0.00 45.89 4.40
79 80 1.227943 AAAGCACTTCAGCTCGCCA 60.228 52.632 0.00 0.00 45.89 5.69
80 81 1.208614 CAAAGCACTTCAGCTCGCC 59.791 57.895 0.00 0.00 45.89 5.54
81 82 1.208614 CCAAAGCACTTCAGCTCGC 59.791 57.895 0.00 0.00 45.89 5.03
82 83 1.208614 GCCAAAGCACTTCAGCTCG 59.791 57.895 0.00 0.00 45.89 5.03
83 84 2.334307 TGCCAAAGCACTTCAGCTC 58.666 52.632 0.00 0.00 46.52 4.09
84 85 4.585070 TGCCAAAGCACTTCAGCT 57.415 50.000 6.27 0.00 46.52 4.24
93 94 2.033174 CCACCACAAAAATTGCCAAAGC 59.967 45.455 0.00 0.00 40.48 3.51
94 95 3.539604 TCCACCACAAAAATTGCCAAAG 58.460 40.909 0.00 0.00 0.00 2.77
95 96 3.539604 CTCCACCACAAAAATTGCCAAA 58.460 40.909 0.00 0.00 0.00 3.28
96 97 2.744494 GCTCCACCACAAAAATTGCCAA 60.744 45.455 0.00 0.00 0.00 4.52
97 98 1.202627 GCTCCACCACAAAAATTGCCA 60.203 47.619 0.00 0.00 0.00 4.92
98 99 1.511850 GCTCCACCACAAAAATTGCC 58.488 50.000 0.00 0.00 0.00 4.52
99 100 1.511850 GGCTCCACCACAAAAATTGC 58.488 50.000 0.00 0.00 38.86 3.56
100 101 1.782044 CGGCTCCACCACAAAAATTG 58.218 50.000 0.00 0.00 39.03 2.32
101 102 0.033366 GCGGCTCCACCACAAAAATT 59.967 50.000 0.00 0.00 39.03 1.82
102 103 1.665442 GCGGCTCCACCACAAAAAT 59.335 52.632 0.00 0.00 39.03 1.82
103 104 2.494530 GGCGGCTCCACCACAAAAA 61.495 57.895 0.00 0.00 39.03 1.94
104 105 2.909965 GGCGGCTCCACCACAAAA 60.910 61.111 0.00 0.00 39.03 2.44
130 131 2.179517 CCTCACGTCAGCGGAGAC 59.820 66.667 1.64 0.00 43.45 3.36
131 132 3.062466 CCCTCACGTCAGCGGAGA 61.062 66.667 1.64 0.00 43.45 3.71
132 133 4.135153 CCCCTCACGTCAGCGGAG 62.135 72.222 0.00 0.00 43.45 4.63
135 136 4.742201 CACCCCCTCACGTCAGCG 62.742 72.222 0.00 0.00 44.93 5.18
136 137 4.394712 CCACCCCCTCACGTCAGC 62.395 72.222 0.00 0.00 0.00 4.26
137 138 4.394712 GCCACCCCCTCACGTCAG 62.395 72.222 0.00 0.00 0.00 3.51
139 140 4.394712 CTGCCACCCCCTCACGTC 62.395 72.222 0.00 0.00 0.00 4.34
140 141 4.954118 TCTGCCACCCCCTCACGT 62.954 66.667 0.00 0.00 0.00 4.49
141 142 4.087892 CTCTGCCACCCCCTCACG 62.088 72.222 0.00 0.00 0.00 4.35
142 143 3.721706 CCTCTGCCACCCCCTCAC 61.722 72.222 0.00 0.00 0.00 3.51
143 144 3.940480 TCCTCTGCCACCCCCTCA 61.940 66.667 0.00 0.00 0.00 3.86
144 145 3.403558 GTCCTCTGCCACCCCCTC 61.404 72.222 0.00 0.00 0.00 4.30
148 149 3.775654 CTCGGTCCTCTGCCACCC 61.776 72.222 0.00 0.00 0.00 4.61
149 150 3.775654 CCTCGGTCCTCTGCCACC 61.776 72.222 0.00 0.00 0.00 4.61
150 151 4.459089 GCCTCGGTCCTCTGCCAC 62.459 72.222 0.00 0.00 0.00 5.01
151 152 2.798445 TAAGCCTCGGTCCTCTGCCA 62.798 60.000 0.00 0.00 0.00 4.92
152 153 2.022240 CTAAGCCTCGGTCCTCTGCC 62.022 65.000 0.00 0.00 0.00 4.85
153 154 1.038130 TCTAAGCCTCGGTCCTCTGC 61.038 60.000 0.00 0.00 0.00 4.26
154 155 1.135333 GTTCTAAGCCTCGGTCCTCTG 59.865 57.143 0.00 0.00 0.00 3.35
155 156 1.476477 GTTCTAAGCCTCGGTCCTCT 58.524 55.000 0.00 0.00 0.00 3.69
156 157 0.100861 CGTTCTAAGCCTCGGTCCTC 59.899 60.000 0.00 0.00 0.00 3.71
157 158 1.946475 GCGTTCTAAGCCTCGGTCCT 61.946 60.000 0.00 0.00 0.00 3.85
158 159 1.518792 GCGTTCTAAGCCTCGGTCC 60.519 63.158 0.00 0.00 0.00 4.46
159 160 0.179108 ATGCGTTCTAAGCCTCGGTC 60.179 55.000 0.00 0.00 0.00 4.79
165 166 1.334869 CCCATTGATGCGTTCTAAGCC 59.665 52.381 0.00 0.00 0.00 4.35
166 167 2.288666 TCCCATTGATGCGTTCTAAGC 58.711 47.619 0.00 0.00 0.00 3.09
170 171 1.212688 TGGATCCCATTGATGCGTTCT 59.787 47.619 9.90 0.00 44.25 3.01
175 176 1.174712 CCGGTGGATCCCATTGATGC 61.175 60.000 9.90 0.00 41.85 3.91
177 178 1.151450 GCCGGTGGATCCCATTGAT 59.849 57.895 9.90 0.00 35.28 2.57
180 181 4.875713 GCGCCGGTGGATCCCATT 62.876 66.667 18.41 0.00 35.28 3.16
209 210 4.854924 TGATGGCCATGCGTCGGG 62.855 66.667 26.56 0.00 0.00 5.14
216 217 2.196776 GGGGAGGTGATGGCCATG 59.803 66.667 26.56 0.00 0.00 3.66
217 218 3.105928 GGGGGAGGTGATGGCCAT 61.106 66.667 20.96 20.96 0.00 4.40
237 238 1.799181 CGAATAGGACACAGGACAGCG 60.799 57.143 0.00 0.00 0.00 5.18
239 240 2.100197 TCCGAATAGGACACAGGACAG 58.900 52.381 0.00 0.00 45.98 3.51
260 261 3.633094 CTCTGGCACGGACAGGACG 62.633 68.421 6.88 0.00 39.80 4.79
262 263 2.203640 ACTCTGGCACGGACAGGA 60.204 61.111 6.88 0.00 39.80 3.86
280 281 2.438434 CATTGGGTCCTCGTGCCC 60.438 66.667 0.00 0.00 45.04 5.36
291 292 1.366111 CGTACGAAGGCACCATTGGG 61.366 60.000 10.44 0.00 41.29 4.12
296 297 0.108992 GACATCGTACGAAGGCACCA 60.109 55.000 23.56 0.00 0.00 4.17
299 300 0.172578 CTGGACATCGTACGAAGGCA 59.827 55.000 25.94 12.32 0.00 4.75
305 306 1.990799 TTTGCTCTGGACATCGTACG 58.009 50.000 9.53 9.53 0.00 3.67
323 324 3.118261 TCTGCTCCTCCGAAAGCATAATT 60.118 43.478 5.77 0.00 46.69 1.40
330 331 2.548875 CTCAATCTGCTCCTCCGAAAG 58.451 52.381 0.00 0.00 0.00 2.62
360 361 4.404098 CAGGTACGCCCCCACCAC 62.404 72.222 0.00 0.00 37.28 4.16
384 386 3.753434 AGCTCCAGTCGCTCCACG 61.753 66.667 0.00 0.00 45.62 4.94
427 429 4.712425 ACGCAGTACCACCGACGC 62.712 66.667 4.69 0.00 41.94 5.19
491 493 0.613260 TCGGTTCATCTTGGACCAGG 59.387 55.000 5.83 0.00 32.95 4.45
494 496 2.403252 ACATCGGTTCATCTTGGACC 57.597 50.000 0.00 0.00 0.00 4.46
500 502 0.595053 CGCGCTACATCGGTTCATCT 60.595 55.000 5.56 0.00 0.00 2.90
501 503 0.594028 TCGCGCTACATCGGTTCATC 60.594 55.000 5.56 0.00 0.00 2.92
502 504 0.032130 ATCGCGCTACATCGGTTCAT 59.968 50.000 5.56 0.00 0.00 2.57
503 505 0.869880 CATCGCGCTACATCGGTTCA 60.870 55.000 5.56 0.00 0.00 3.18
519 521 2.280052 GAGCTCGCCCTCTGCATC 60.280 66.667 0.00 0.00 41.33 3.91
531 533 2.049063 AACGACGTGCAGGAGCTC 60.049 61.111 14.38 4.71 42.74 4.09
559 561 2.105128 CTCCAGTGGCGTCGGATC 59.895 66.667 3.51 0.00 0.00 3.36
591 593 0.384309 TCGGATATGTGGCGAGTGAC 59.616 55.000 0.00 0.00 0.00 3.67
598 600 2.549754 CAATTCCAGTCGGATATGTGGC 59.450 50.000 0.00 0.00 42.41 5.01
599 601 3.141398 CCAATTCCAGTCGGATATGTGG 58.859 50.000 0.00 0.00 42.41 4.17
603 605 3.071602 CCACTCCAATTCCAGTCGGATAT 59.928 47.826 0.00 0.00 42.41 1.63
604 606 2.434336 CCACTCCAATTCCAGTCGGATA 59.566 50.000 0.00 0.00 42.41 2.59
617 619 2.165167 CTACACCGTAGTCCACTCCAA 58.835 52.381 0.00 0.00 0.00 3.53
619 621 1.101331 CCTACACCGTAGTCCACTCC 58.899 60.000 0.83 0.00 0.00 3.85
629 631 0.902531 CCAGATGAACCCTACACCGT 59.097 55.000 0.00 0.00 0.00 4.83
634 636 2.777692 TCCCAATCCAGATGAACCCTAC 59.222 50.000 0.00 0.00 0.00 3.18
664 666 2.040544 CGTGACCCGTACGTACCCT 61.041 63.158 19.67 2.22 36.83 4.34
669 671 3.673484 CCACCGTGACCCGTACGT 61.673 66.667 15.21 0.00 39.76 3.57
690 692 0.737715 CAGGTCTGCCACGTTAGCTC 60.738 60.000 8.66 0.58 37.19 4.09
691 693 1.293498 CAGGTCTGCCACGTTAGCT 59.707 57.895 8.66 0.00 37.19 3.32
695 697 3.550974 AGACAGGTCTGCCACGTT 58.449 55.556 0.22 0.00 38.75 3.99
707 709 2.258591 CCCGACGTGTCCAGACAG 59.741 66.667 0.00 0.00 42.74 3.51
708 710 3.299977 CCCCGACGTGTCCAGACA 61.300 66.667 0.00 0.00 39.32 3.41
724 726 1.270907 AGGATGGATATGTCGAGGCC 58.729 55.000 0.00 0.00 0.00 5.19
740 742 7.181665 CCTCTCATATCCAATCCAAATCTAGGA 59.818 40.741 0.00 0.00 39.97 2.94
745 747 5.182760 GCACCTCTCATATCCAATCCAAATC 59.817 44.000 0.00 0.00 0.00 2.17
752 754 2.440627 TGCAGCACCTCTCATATCCAAT 59.559 45.455 0.00 0.00 0.00 3.16
766 768 1.884235 ACTTCTAGGTTGTGCAGCAC 58.116 50.000 19.37 19.37 34.56 4.40
772 774 2.814336 GGCTCCAAACTTCTAGGTTGTG 59.186 50.000 4.00 0.00 41.22 3.33
780 782 1.133915 TCAAACCGGCTCCAAACTTCT 60.134 47.619 0.00 0.00 0.00 2.85
782 784 1.318576 CTCAAACCGGCTCCAAACTT 58.681 50.000 0.00 0.00 0.00 2.66
787 789 1.827399 GACTCCTCAAACCGGCTCCA 61.827 60.000 0.00 0.00 0.00 3.86
857 864 1.305219 TTCGATTTGCCTCCTTGCCG 61.305 55.000 0.00 0.00 0.00 5.69
859 866 0.179189 CGTTCGATTTGCCTCCTTGC 60.179 55.000 0.00 0.00 0.00 4.01
873 880 1.192757 TGACGCAAATACAACCGTTCG 59.807 47.619 0.00 0.00 33.63 3.95
981 988 0.179004 TGGGTGCCACGACTCAAAAT 60.179 50.000 0.00 0.00 0.00 1.82
1011 1018 2.890474 CTCGGGTTGCGATTCGGG 60.890 66.667 8.34 0.00 0.00 5.14
1024 1031 2.363018 TCCCTCAGGTCAGCTCGG 60.363 66.667 0.00 0.00 0.00 4.63
1037 1044 4.444081 ACTCGGTAGCGCCTCCCT 62.444 66.667 9.99 0.00 34.25 4.20
1038 1045 4.208686 CACTCGGTAGCGCCTCCC 62.209 72.222 9.99 0.00 34.25 4.30
1039 1046 2.409241 GATCACTCGGTAGCGCCTCC 62.409 65.000 9.99 6.02 34.25 4.30
1134 1170 2.683212 AGAGGAAGCAGAGCCGCT 60.683 61.111 0.00 0.00 46.67 5.52
1489 1547 0.317160 TGCACCTGGTGTTACTCTCG 59.683 55.000 26.48 0.00 35.75 4.04
1511 1569 0.595095 CAACCAGCTTTGAGGCAGTC 59.405 55.000 0.00 0.00 34.17 3.51
1957 2832 2.038557 TGAGCAGTGGAGGTTCCTTTAC 59.961 50.000 0.00 0.00 37.46 2.01
1960 2835 1.280421 GATGAGCAGTGGAGGTTCCTT 59.720 52.381 0.00 0.00 37.46 3.36
2024 2899 6.593382 AGACAGAACAGAATGATCTTAACAGC 59.407 38.462 0.00 0.00 46.89 4.40
2050 2925 9.586435 CTAATATGAAATTTTTGGACCTGGTTC 57.414 33.333 0.00 0.00 0.00 3.62
2711 3586 1.901591 ACATCTGACCCAGCTTTGTG 58.098 50.000 0.00 0.00 0.00 3.33
3067 3942 4.338682 AGGCTGTGATAGTAGACCTTAACG 59.661 45.833 0.00 0.00 0.00 3.18
3154 4029 3.572584 CAAAAGCTTGTCTTCTGATGGC 58.427 45.455 0.00 0.00 32.88 4.40
3321 4209 3.975168 TGGCCTAAAGGTCAGAAGTAC 57.025 47.619 3.32 0.00 46.36 2.73
3364 4252 4.323417 TCATTAACTGCAGAATGAACGGT 58.677 39.130 23.35 0.00 38.73 4.83
3663 4593 3.812053 AGCAGAATATTTCACATCTCCGC 59.188 43.478 0.00 0.00 0.00 5.54
3688 4618 5.003804 AGACATACCGCAGTGAGAAAAATT 58.996 37.500 0.00 0.00 0.00 1.82
4089 5019 1.529948 AGGACTCGAACCCGTGACA 60.530 57.895 4.92 0.00 37.05 3.58
4225 5155 6.945435 TCAGGGTTGAAAAATGCACTTAGATA 59.055 34.615 0.00 0.00 0.00 1.98
4226 5156 5.774690 TCAGGGTTGAAAAATGCACTTAGAT 59.225 36.000 0.00 0.00 0.00 1.98
4227 5157 5.136828 TCAGGGTTGAAAAATGCACTTAGA 58.863 37.500 0.00 0.00 0.00 2.10
4228 5158 5.452078 TCAGGGTTGAAAAATGCACTTAG 57.548 39.130 0.00 0.00 0.00 2.18
4229 5159 5.362430 AGTTCAGGGTTGAAAAATGCACTTA 59.638 36.000 0.00 0.00 44.49 2.24
4998 5971 5.821097 TGTTTTCAGTTTTGGGGGAAAAAT 58.179 33.333 0.00 0.00 39.92 1.82
5055 6028 3.462021 GGAGTAGCTCATACTGCTTTGG 58.538 50.000 0.00 0.00 46.37 3.28
5148 6236 9.668497 GATACCCAAAAGAACTCATACTAACTT 57.332 33.333 0.00 0.00 0.00 2.66
5254 6342 7.114388 GGTTGATGAAACGAAGGAAAACAATAC 59.886 37.037 0.00 0.00 39.91 1.89
5486 6576 6.509418 TCCAATGCTACATAAAGGAAACAC 57.491 37.500 0.00 0.00 0.00 3.32
5689 6780 3.610911 GCTGTGGTAAGCTACAATCCTT 58.389 45.455 0.00 0.00 40.20 3.36
5730 6821 8.865001 GTCTCTTATCTGTTACAGAATTGACAC 58.135 37.037 19.42 10.67 44.04 3.67
5844 6935 5.304614 ACTTTGAGTAGTAGCTTTGACCTCA 59.695 40.000 0.00 0.00 0.00 3.86
5875 6966 3.442625 ACACAATAGCTACTACTGCGACA 59.557 43.478 0.00 0.00 35.28 4.35
5928 7022 6.530534 GTGGATTTGATCAAAATTCTCAGCAG 59.469 38.462 23.91 0.00 38.64 4.24
6035 7129 5.063204 TCTTAACAACCAAGGATGTCACAG 58.937 41.667 2.31 0.53 30.77 3.66
6076 7170 5.438761 AAAATGTACAAGGTGTCAAGCTC 57.561 39.130 0.00 0.00 31.29 4.09
6131 7225 4.246458 GTCTGAATGAGGTGTAGGTCAAC 58.754 47.826 0.00 0.00 0.00 3.18
6217 7318 3.748048 CCAGCGAGAATGTCTCAGAAAAA 59.252 43.478 6.12 0.00 43.55 1.94
6218 7319 3.329386 CCAGCGAGAATGTCTCAGAAAA 58.671 45.455 6.12 0.00 43.55 2.29
6219 7320 2.354103 CCCAGCGAGAATGTCTCAGAAA 60.354 50.000 6.12 0.00 43.55 2.52
6220 7321 1.205655 CCCAGCGAGAATGTCTCAGAA 59.794 52.381 6.12 0.00 43.55 3.02
6221 7322 0.820226 CCCAGCGAGAATGTCTCAGA 59.180 55.000 6.12 0.00 43.55 3.27
6222 7323 0.809241 GCCCAGCGAGAATGTCTCAG 60.809 60.000 6.12 0.61 43.55 3.35
6238 7339 4.817318 TGGGACAATTTGAATAAAGCCC 57.183 40.909 2.79 0.00 31.92 5.19
6341 7442 2.839486 TTCAAGGCTCACAATCTCGT 57.161 45.000 0.00 0.00 0.00 4.18
6419 7520 7.650504 ACATGCTGCAATCATACATAAAATCAC 59.349 33.333 6.36 0.00 0.00 3.06
6426 7527 3.747529 CGGACATGCTGCAATCATACATA 59.252 43.478 6.36 0.00 0.00 2.29
6451 7552 3.995199 TGATATCAAGCAGGGATCGTTC 58.005 45.455 1.98 0.00 0.00 3.95
6477 7581 3.243839 GGCTTCTGATTGCAAAAAGGTGA 60.244 43.478 1.71 0.00 0.00 4.02
6637 7914 2.591715 GCCGTTGCTGTGGTCTGT 60.592 61.111 0.00 0.00 33.53 3.41
6675 7952 0.448990 GATGAATGCTGACGCTGCAA 59.551 50.000 13.36 1.34 41.24 4.08
6859 8139 2.734591 GCGATATGGAGGGCACGA 59.265 61.111 0.00 0.00 0.00 4.35
6905 8185 2.083774 GTCCGTTGCAAATCATGAGGA 58.916 47.619 0.00 0.00 0.00 3.71
6906 8186 2.086869 AGTCCGTTGCAAATCATGAGG 58.913 47.619 0.00 0.00 0.00 3.86
6907 8187 2.485426 ACAGTCCGTTGCAAATCATGAG 59.515 45.455 0.00 0.00 0.00 2.90
6908 8188 2.483877 GACAGTCCGTTGCAAATCATGA 59.516 45.455 0.00 0.00 0.00 3.07
6909 8189 2.226200 TGACAGTCCGTTGCAAATCATG 59.774 45.455 0.00 0.00 0.00 3.07
6910 8190 2.503331 TGACAGTCCGTTGCAAATCAT 58.497 42.857 0.00 0.00 0.00 2.45
6911 8191 1.960417 TGACAGTCCGTTGCAAATCA 58.040 45.000 0.00 0.00 0.00 2.57
6912 8192 4.882671 ATATGACAGTCCGTTGCAAATC 57.117 40.909 0.00 0.00 0.00 2.17
6913 8193 6.426937 GGTATATATGACAGTCCGTTGCAAAT 59.573 38.462 0.00 0.00 0.00 2.32
6914 8194 5.756347 GGTATATATGACAGTCCGTTGCAAA 59.244 40.000 0.00 0.00 0.00 3.68
6915 8195 5.294356 GGTATATATGACAGTCCGTTGCAA 58.706 41.667 0.00 0.00 0.00 4.08
6916 8196 4.262292 GGGTATATATGACAGTCCGTTGCA 60.262 45.833 0.00 0.00 0.00 4.08
6917 8197 4.021368 AGGGTATATATGACAGTCCGTTGC 60.021 45.833 0.00 0.00 0.00 4.17
6918 8198 5.243060 TGAGGGTATATATGACAGTCCGTTG 59.757 44.000 0.00 0.00 0.00 4.10
6919 8199 5.391256 TGAGGGTATATATGACAGTCCGTT 58.609 41.667 0.00 0.00 0.00 4.44
6920 8200 4.994282 TGAGGGTATATATGACAGTCCGT 58.006 43.478 0.00 0.00 0.00 4.69
6921 8201 5.652452 TCATGAGGGTATATATGACAGTCCG 59.348 44.000 0.00 0.00 0.00 4.79
6922 8202 7.482169 TTCATGAGGGTATATATGACAGTCC 57.518 40.000 0.00 0.00 29.96 3.85
6924 8204 8.700051 GCTATTCATGAGGGTATATATGACAGT 58.300 37.037 0.00 0.00 29.96 3.55
6925 8205 8.922237 AGCTATTCATGAGGGTATATATGACAG 58.078 37.037 0.00 0.00 29.96 3.51
6926 8206 8.844865 AGCTATTCATGAGGGTATATATGACA 57.155 34.615 0.00 0.00 29.96 3.58
6927 8207 9.142014 AGAGCTATTCATGAGGGTATATATGAC 57.858 37.037 0.00 0.00 29.96 3.06
6928 8208 9.360901 GAGAGCTATTCATGAGGGTATATATGA 57.639 37.037 0.00 0.00 0.00 2.15
6929 8209 8.584157 GGAGAGCTATTCATGAGGGTATATATG 58.416 40.741 0.00 0.00 0.00 1.78
6930 8210 8.518746 AGGAGAGCTATTCATGAGGGTATATAT 58.481 37.037 0.00 0.00 0.00 0.86
6931 8211 7.888105 AGGAGAGCTATTCATGAGGGTATATA 58.112 38.462 0.00 0.00 0.00 0.86
6932 8212 6.751050 AGGAGAGCTATTCATGAGGGTATAT 58.249 40.000 0.00 0.00 0.00 0.86
6933 8213 6.159172 AGGAGAGCTATTCATGAGGGTATA 57.841 41.667 0.00 0.00 0.00 1.47
6934 8214 5.022227 AGGAGAGCTATTCATGAGGGTAT 57.978 43.478 0.00 0.00 0.00 2.73
6935 8215 4.477536 AGGAGAGCTATTCATGAGGGTA 57.522 45.455 0.00 0.00 0.00 3.69
6936 8216 3.342926 AGGAGAGCTATTCATGAGGGT 57.657 47.619 0.00 0.00 0.00 4.34
6937 8217 3.305950 CGAAGGAGAGCTATTCATGAGGG 60.306 52.174 0.00 0.00 0.00 4.30
6938 8218 3.320541 ACGAAGGAGAGCTATTCATGAGG 59.679 47.826 0.00 0.00 0.00 3.86
6939 8219 4.297510 CACGAAGGAGAGCTATTCATGAG 58.702 47.826 0.00 0.00 0.00 2.90
6940 8220 3.491619 GCACGAAGGAGAGCTATTCATGA 60.492 47.826 0.00 0.00 0.00 3.07
6941 8221 2.799412 GCACGAAGGAGAGCTATTCATG 59.201 50.000 0.00 0.00 0.00 3.07
6942 8222 2.224161 GGCACGAAGGAGAGCTATTCAT 60.224 50.000 0.00 0.00 0.00 2.57
6943 8223 1.137086 GGCACGAAGGAGAGCTATTCA 59.863 52.381 0.00 0.00 0.00 2.57
6944 8224 1.539280 GGGCACGAAGGAGAGCTATTC 60.539 57.143 0.00 0.00 0.00 1.75
6945 8225 0.466124 GGGCACGAAGGAGAGCTATT 59.534 55.000 0.00 0.00 0.00 1.73
6946 8226 0.397816 AGGGCACGAAGGAGAGCTAT 60.398 55.000 0.00 0.00 0.00 2.97
6947 8227 1.000486 AGGGCACGAAGGAGAGCTA 60.000 57.895 0.00 0.00 0.00 3.32
6948 8228 2.284258 AGGGCACGAAGGAGAGCT 60.284 61.111 0.00 0.00 0.00 4.09
6949 8229 2.185608 GAGGGCACGAAGGAGAGC 59.814 66.667 0.00 0.00 0.00 4.09
6950 8230 1.333636 ATGGAGGGCACGAAGGAGAG 61.334 60.000 0.00 0.00 0.00 3.20
6951 8231 0.032515 TATGGAGGGCACGAAGGAGA 60.033 55.000 0.00 0.00 0.00 3.71
6952 8232 1.001406 GATATGGAGGGCACGAAGGAG 59.999 57.143 0.00 0.00 0.00 3.69
6953 8233 1.048601 GATATGGAGGGCACGAAGGA 58.951 55.000 0.00 0.00 0.00 3.36
6954 8234 0.319900 CGATATGGAGGGCACGAAGG 60.320 60.000 0.00 0.00 0.00 3.46
6955 8235 0.946221 GCGATATGGAGGGCACGAAG 60.946 60.000 0.00 0.00 0.00 3.79
6956 8236 1.069090 GCGATATGGAGGGCACGAA 59.931 57.895 0.00 0.00 0.00 3.85
6957 8237 2.734591 GCGATATGGAGGGCACGA 59.265 61.111 0.00 0.00 0.00 4.35
6958 8238 2.357517 GGCGATATGGAGGGCACG 60.358 66.667 0.00 0.00 0.00 5.34
6959 8239 2.032681 GGGCGATATGGAGGGCAC 59.967 66.667 0.00 0.00 0.00 5.01
6960 8240 1.640593 TTTGGGCGATATGGAGGGCA 61.641 55.000 0.00 0.00 0.00 5.36
6961 8241 0.890996 CTTTGGGCGATATGGAGGGC 60.891 60.000 0.00 0.00 0.00 5.19
6962 8242 0.474184 ACTTTGGGCGATATGGAGGG 59.526 55.000 0.00 0.00 0.00 4.30
6963 8243 1.134098 ACACTTTGGGCGATATGGAGG 60.134 52.381 0.00 0.00 0.00 4.30
6964 8244 2.213499 GACACTTTGGGCGATATGGAG 58.787 52.381 0.00 0.00 0.00 3.86
6965 8245 1.557371 TGACACTTTGGGCGATATGGA 59.443 47.619 0.00 0.00 0.00 3.41
6966 8246 1.670811 GTGACACTTTGGGCGATATGG 59.329 52.381 0.00 0.00 0.00 2.74
6967 8247 1.670811 GGTGACACTTTGGGCGATATG 59.329 52.381 5.39 0.00 0.00 1.78
6968 8248 1.280710 TGGTGACACTTTGGGCGATAT 59.719 47.619 5.39 0.00 33.40 1.63
6969 8249 0.687920 TGGTGACACTTTGGGCGATA 59.312 50.000 5.39 0.00 33.40 2.92
6970 8250 1.454104 TGGTGACACTTTGGGCGAT 59.546 52.632 5.39 0.00 33.40 4.58
6971 8251 2.911928 TGGTGACACTTTGGGCGA 59.088 55.556 5.39 0.00 33.40 5.54
6981 8261 4.617520 ACGCGCATGGTGGTGACA 62.618 61.111 5.73 0.00 38.70 3.58
6982 8262 4.088762 CACGCGCATGGTGGTGAC 62.089 66.667 5.73 0.00 32.23 3.67
6983 8263 3.816367 TTCACGCGCATGGTGGTGA 62.816 57.895 5.73 8.97 37.61 4.02
6984 8264 3.353029 TTCACGCGCATGGTGGTG 61.353 61.111 5.73 6.34 36.09 4.17
6985 8265 3.353836 GTTCACGCGCATGGTGGT 61.354 61.111 5.73 0.00 36.09 4.16
6986 8266 3.027170 GAGTTCACGCGCATGGTGG 62.027 63.158 5.73 0.00 36.09 4.61
6987 8267 2.476051 GAGTTCACGCGCATGGTG 59.524 61.111 5.73 8.01 36.74 4.17
6988 8268 2.742372 GGAGTTCACGCGCATGGT 60.742 61.111 5.73 0.00 0.00 3.55
6989 8269 2.434884 AGGAGTTCACGCGCATGG 60.435 61.111 5.73 0.00 0.00 3.66
6990 8270 1.086067 ATGAGGAGTTCACGCGCATG 61.086 55.000 5.73 0.97 38.99 4.06
6991 8271 1.086067 CATGAGGAGTTCACGCGCAT 61.086 55.000 5.73 0.00 38.99 4.73
6992 8272 1.737735 CATGAGGAGTTCACGCGCA 60.738 57.895 5.73 0.00 38.99 6.09
6993 8273 1.416813 CTCATGAGGAGTTCACGCGC 61.417 60.000 15.38 0.00 38.99 6.86
6994 8274 2.658538 CTCATGAGGAGTTCACGCG 58.341 57.895 15.38 3.53 38.99 6.01
7084 8364 7.912250 GTGTGGTTTTTATCATCTAATGAGCTG 59.088 37.037 0.00 0.00 43.53 4.24
7092 8372 4.393680 GGTGCGTGTGGTTTTTATCATCTA 59.606 41.667 0.00 0.00 0.00 1.98
7103 8383 1.153329 TTTCGAGGTGCGTGTGGTT 60.153 52.632 0.00 0.00 41.80 3.67
7109 8389 1.947642 GTGTCGTTTCGAGGTGCGT 60.948 57.895 0.00 0.00 41.80 5.24
7163 8443 2.292267 CTGTGTCTGTGCCTTCTGTTT 58.708 47.619 0.00 0.00 0.00 2.83
7177 8457 1.656652 ATATGGCAACGAGCTGTGTC 58.343 50.000 0.00 0.00 44.79 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.