Multiple sequence alignment - TraesCS4A01G192800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G192800 chr4A 100.000 4330 0 0 1 4330 473764103 473768432 0.000000e+00 7997
1 TraesCS4A01G192800 chr4D 95.533 3895 121 24 460 4330 101507255 101503390 0.000000e+00 6180
2 TraesCS4A01G192800 chr4B 94.335 3919 143 34 447 4330 145532649 145528775 0.000000e+00 5934
3 TraesCS4A01G192800 chr5D 82.054 964 156 12 1569 2519 232849555 232848596 0.000000e+00 806
4 TraesCS4A01G192800 chr5D 78.261 368 75 5 1 367 469468965 469469328 9.360000e-57 231
5 TraesCS4A01G192800 chr5A 81.855 981 153 19 1554 2514 322478806 322479781 0.000000e+00 802
6 TraesCS4A01G192800 chr5A 77.136 433 90 5 5 435 688913619 688914044 4.330000e-60 243
7 TraesCS4A01G192800 chr5B 80.645 992 177 12 1539 2519 272166987 272167974 0.000000e+00 754
8 TraesCS4A01G192800 chr2B 81.111 450 76 7 1 449 91592377 91591936 6.890000e-93 351
9 TraesCS4A01G192800 chr2D 79.634 437 88 1 14 450 524331906 524332341 3.250000e-81 313
10 TraesCS4A01G192800 chr2D 80.516 349 62 5 103 449 619938574 619938230 3.320000e-66 263
11 TraesCS4A01G192800 chr7A 78.540 452 91 6 1 449 576864279 576864727 4.240000e-75 292
12 TraesCS4A01G192800 chr7A 78.366 453 94 4 1 451 658203625 658203175 1.520000e-74 291
13 TraesCS4A01G192800 chr7A 79.157 427 82 4 1 427 6755049 6755468 5.480000e-74 289
14 TraesCS4A01G192800 chr7D 82.029 345 57 4 1 343 60080582 60080241 5.480000e-74 289


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G192800 chr4A 473764103 473768432 4329 False 7997 7997 100.000 1 4330 1 chr4A.!!$F1 4329
1 TraesCS4A01G192800 chr4D 101503390 101507255 3865 True 6180 6180 95.533 460 4330 1 chr4D.!!$R1 3870
2 TraesCS4A01G192800 chr4B 145528775 145532649 3874 True 5934 5934 94.335 447 4330 1 chr4B.!!$R1 3883
3 TraesCS4A01G192800 chr5D 232848596 232849555 959 True 806 806 82.054 1569 2519 1 chr5D.!!$R1 950
4 TraesCS4A01G192800 chr5A 322478806 322479781 975 False 802 802 81.855 1554 2514 1 chr5A.!!$F1 960
5 TraesCS4A01G192800 chr5B 272166987 272167974 987 False 754 754 80.645 1539 2519 1 chr5B.!!$F1 980

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.033090 GACCCGGTCTTCGTTTGTCT 59.967 55.000 10.59 0.0 37.11 3.41 F
1084 1102 0.040351 CTCACTCTCTCTCCACCCCA 59.960 60.000 0.00 0.0 0.00 4.96 F
1238 1256 0.469917 TCTCGCCATCCAATCCTTCC 59.530 55.000 0.00 0.0 0.00 3.46 F
1338 1356 0.740737 ATAACTTGCCTCGCCATTGC 59.259 50.000 0.00 0.0 0.00 3.56 F
2087 2121 1.195448 CGCAGTGTGTCTGGTTTGATC 59.805 52.381 0.00 0.0 43.78 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 1826 0.035439 GGGGGATGCTGAACTCGAAA 60.035 55.000 0.00 0.00 0.00 3.46 R
2077 2111 1.019673 CGCCATCCAGATCAAACCAG 58.980 55.000 0.00 0.00 0.00 4.00 R
2311 2345 1.321474 CCAGAAGCAAAGCCAACAGA 58.679 50.000 0.00 0.00 0.00 3.41 R
2386 2420 1.597461 CAAAGTCTCCCCGACCTCC 59.403 63.158 0.00 0.00 43.91 4.30 R
3771 3820 0.987294 AACAGAGGACAGACCCATGG 59.013 55.000 4.14 4.14 40.05 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.302019 AAGGTTCTCCCTGCCTAGC 58.698 57.895 0.00 0.00 45.47 3.42
19 20 1.275421 AAGGTTCTCCCTGCCTAGCC 61.275 60.000 0.00 0.00 45.47 3.93
20 21 2.747443 GGTTCTCCCTGCCTAGCCC 61.747 68.421 0.00 0.00 0.00 5.19
21 22 2.366972 TTCTCCCTGCCTAGCCCC 60.367 66.667 0.00 0.00 0.00 5.80
22 23 4.499116 TCTCCCTGCCTAGCCCCC 62.499 72.222 0.00 0.00 0.00 5.40
23 24 4.823732 CTCCCTGCCTAGCCCCCA 62.824 72.222 0.00 0.00 0.00 4.96
24 25 4.122670 TCCCTGCCTAGCCCCCAT 62.123 66.667 0.00 0.00 0.00 4.00
25 26 3.574237 CCCTGCCTAGCCCCCATC 61.574 72.222 0.00 0.00 0.00 3.51
26 27 3.574237 CCTGCCTAGCCCCCATCC 61.574 72.222 0.00 0.00 0.00 3.51
27 28 3.574237 CTGCCTAGCCCCCATCCC 61.574 72.222 0.00 0.00 0.00 3.85
30 31 4.900259 CCTAGCCCCCATCCCGGT 62.900 72.222 0.00 0.00 0.00 5.28
31 32 3.560251 CTAGCCCCCATCCCGGTG 61.560 72.222 0.00 0.00 0.00 4.94
39 40 4.082523 CATCCCGGTGGTGCGTCT 62.083 66.667 0.00 0.00 0.00 4.18
40 41 2.363276 ATCCCGGTGGTGCGTCTA 60.363 61.111 0.00 0.00 0.00 2.59
41 42 2.423898 ATCCCGGTGGTGCGTCTAG 61.424 63.158 0.00 0.00 0.00 2.43
53 54 3.835686 CGTCTAGCATCGTCAGAGG 57.164 57.895 0.00 0.00 0.00 3.69
54 55 0.309302 CGTCTAGCATCGTCAGAGGG 59.691 60.000 0.00 0.00 0.00 4.30
55 56 1.394618 GTCTAGCATCGTCAGAGGGT 58.605 55.000 0.00 0.00 41.92 4.34
56 57 1.066303 GTCTAGCATCGTCAGAGGGTG 59.934 57.143 0.00 0.00 39.36 4.61
57 58 1.107114 CTAGCATCGTCAGAGGGTGT 58.893 55.000 5.29 0.00 39.36 4.16
58 59 0.817654 TAGCATCGTCAGAGGGTGTG 59.182 55.000 5.29 0.00 39.36 3.82
59 60 1.188219 AGCATCGTCAGAGGGTGTGT 61.188 55.000 5.29 0.00 37.51 3.72
60 61 1.016130 GCATCGTCAGAGGGTGTGTG 61.016 60.000 5.29 0.00 0.00 3.82
61 62 0.390340 CATCGTCAGAGGGTGTGTGG 60.390 60.000 0.00 0.00 0.00 4.17
62 63 0.541998 ATCGTCAGAGGGTGTGTGGA 60.542 55.000 0.00 0.00 0.00 4.02
63 64 1.179174 TCGTCAGAGGGTGTGTGGAG 61.179 60.000 0.00 0.00 0.00 3.86
64 65 1.674057 GTCAGAGGGTGTGTGGAGG 59.326 63.158 0.00 0.00 0.00 4.30
65 66 1.122019 GTCAGAGGGTGTGTGGAGGT 61.122 60.000 0.00 0.00 0.00 3.85
66 67 1.121407 TCAGAGGGTGTGTGGAGGTG 61.121 60.000 0.00 0.00 0.00 4.00
67 68 1.074471 AGAGGGTGTGTGGAGGTGT 60.074 57.895 0.00 0.00 0.00 4.16
68 69 1.071471 GAGGGTGTGTGGAGGTGTG 59.929 63.158 0.00 0.00 0.00 3.82
69 70 1.692749 AGGGTGTGTGGAGGTGTGT 60.693 57.895 0.00 0.00 0.00 3.72
70 71 1.227853 GGGTGTGTGGAGGTGTGTC 60.228 63.158 0.00 0.00 0.00 3.67
71 72 1.696097 GGGTGTGTGGAGGTGTGTCT 61.696 60.000 0.00 0.00 0.00 3.41
72 73 0.532862 GGTGTGTGGAGGTGTGTCTG 60.533 60.000 0.00 0.00 0.00 3.51
73 74 1.146041 TGTGTGGAGGTGTGTCTGC 59.854 57.895 0.00 0.00 0.00 4.26
74 75 1.956170 GTGTGGAGGTGTGTCTGCG 60.956 63.158 0.00 0.00 0.00 5.18
75 76 2.357517 GTGGAGGTGTGTCTGCGG 60.358 66.667 0.00 0.00 0.00 5.69
76 77 4.314440 TGGAGGTGTGTCTGCGGC 62.314 66.667 0.00 0.00 0.00 6.53
80 81 4.760047 GGTGTGTCTGCGGCGGAT 62.760 66.667 15.60 0.00 0.00 4.18
81 82 3.188786 GTGTGTCTGCGGCGGATC 61.189 66.667 15.60 11.70 0.00 3.36
82 83 3.381983 TGTGTCTGCGGCGGATCT 61.382 61.111 15.60 0.00 0.00 2.75
83 84 2.583593 GTGTCTGCGGCGGATCTC 60.584 66.667 15.60 2.77 0.00 2.75
84 85 4.193334 TGTCTGCGGCGGATCTCG 62.193 66.667 15.60 0.00 42.76 4.04
93 94 2.728180 CGGATCTCGCGGGATTCA 59.272 61.111 26.48 0.00 0.00 2.57
94 95 1.372251 CGGATCTCGCGGGATTCAG 60.372 63.158 26.48 15.25 0.00 3.02
95 96 1.742768 GGATCTCGCGGGATTCAGT 59.257 57.895 24.71 0.00 0.00 3.41
96 97 0.319125 GGATCTCGCGGGATTCAGTC 60.319 60.000 24.71 10.74 0.00 3.51
97 98 0.661780 GATCTCGCGGGATTCAGTCG 60.662 60.000 24.71 0.00 0.00 4.18
98 99 1.101635 ATCTCGCGGGATTCAGTCGA 61.102 55.000 17.66 0.00 0.00 4.20
99 100 1.101635 TCTCGCGGGATTCAGTCGAT 61.102 55.000 3.45 0.00 0.00 3.59
100 101 0.936764 CTCGCGGGATTCAGTCGATG 60.937 60.000 0.00 0.00 0.00 3.84
101 102 1.951130 CGCGGGATTCAGTCGATGG 60.951 63.158 0.00 0.00 0.00 3.51
102 103 1.144057 GCGGGATTCAGTCGATGGT 59.856 57.895 0.00 0.00 0.00 3.55
103 104 0.462047 GCGGGATTCAGTCGATGGTT 60.462 55.000 0.00 0.00 0.00 3.67
104 105 1.290203 CGGGATTCAGTCGATGGTTG 58.710 55.000 0.00 0.00 0.00 3.77
105 106 1.405526 CGGGATTCAGTCGATGGTTGT 60.406 52.381 0.00 0.00 0.00 3.32
106 107 2.280628 GGGATTCAGTCGATGGTTGTC 58.719 52.381 0.00 0.00 0.00 3.18
107 108 2.093447 GGGATTCAGTCGATGGTTGTCT 60.093 50.000 0.00 0.00 0.00 3.41
108 109 3.600388 GGATTCAGTCGATGGTTGTCTT 58.400 45.455 0.00 0.00 0.00 3.01
109 110 4.003648 GGATTCAGTCGATGGTTGTCTTT 58.996 43.478 0.00 0.00 0.00 2.52
110 111 4.142816 GGATTCAGTCGATGGTTGTCTTTG 60.143 45.833 0.00 0.00 0.00 2.77
111 112 2.766313 TCAGTCGATGGTTGTCTTTGG 58.234 47.619 0.00 0.00 0.00 3.28
112 113 2.104111 TCAGTCGATGGTTGTCTTTGGT 59.896 45.455 0.00 0.00 0.00 3.67
113 114 2.224079 CAGTCGATGGTTGTCTTTGGTG 59.776 50.000 0.00 0.00 0.00 4.17
114 115 1.535462 GTCGATGGTTGTCTTTGGTGG 59.465 52.381 0.00 0.00 0.00 4.61
115 116 1.418264 TCGATGGTTGTCTTTGGTGGA 59.582 47.619 0.00 0.00 0.00 4.02
116 117 2.039746 TCGATGGTTGTCTTTGGTGGAT 59.960 45.455 0.00 0.00 0.00 3.41
117 118 2.420022 CGATGGTTGTCTTTGGTGGATC 59.580 50.000 0.00 0.00 0.00 3.36
118 119 1.890876 TGGTTGTCTTTGGTGGATCG 58.109 50.000 0.00 0.00 0.00 3.69
119 120 1.142060 TGGTTGTCTTTGGTGGATCGT 59.858 47.619 0.00 0.00 0.00 3.73
120 121 1.804748 GGTTGTCTTTGGTGGATCGTC 59.195 52.381 0.00 0.00 0.00 4.20
121 122 2.550208 GGTTGTCTTTGGTGGATCGTCT 60.550 50.000 0.00 0.00 0.00 4.18
122 123 2.737252 GTTGTCTTTGGTGGATCGTCTC 59.263 50.000 0.00 0.00 0.00 3.36
123 124 1.067846 TGTCTTTGGTGGATCGTCTCG 60.068 52.381 0.00 0.00 0.00 4.04
124 125 0.530744 TCTTTGGTGGATCGTCTCGG 59.469 55.000 0.00 0.00 0.00 4.63
125 126 0.530744 CTTTGGTGGATCGTCTCGGA 59.469 55.000 0.00 0.00 0.00 4.55
126 127 0.245539 TTTGGTGGATCGTCTCGGAC 59.754 55.000 0.00 0.00 0.00 4.79
127 128 1.601419 TTGGTGGATCGTCTCGGACC 61.601 60.000 0.00 0.00 0.00 4.46
128 129 2.783288 GGTGGATCGTCTCGGACCC 61.783 68.421 0.00 0.00 0.00 4.46
129 130 2.827190 TGGATCGTCTCGGACCCG 60.827 66.667 1.31 1.31 41.35 5.28
130 131 3.593794 GGATCGTCTCGGACCCGG 61.594 72.222 8.73 0.00 40.25 5.73
131 132 2.827642 GATCGTCTCGGACCCGGT 60.828 66.667 8.73 0.00 40.25 5.28
132 133 2.827642 ATCGTCTCGGACCCGGTC 60.828 66.667 9.30 9.30 40.25 4.79
133 134 3.341202 ATCGTCTCGGACCCGGTCT 62.341 63.158 17.27 0.00 40.25 3.85
134 135 2.833604 ATCGTCTCGGACCCGGTCTT 62.834 60.000 17.27 0.00 40.25 3.01
135 136 2.883621 GTCTCGGACCCGGTCTTC 59.116 66.667 17.27 0.68 40.25 2.87
136 137 2.749044 TCTCGGACCCGGTCTTCG 60.749 66.667 17.27 12.94 40.25 3.79
137 138 3.060615 CTCGGACCCGGTCTTCGT 61.061 66.667 17.27 0.00 40.25 3.85
138 139 2.598394 TCGGACCCGGTCTTCGTT 60.598 61.111 17.27 0.00 40.25 3.85
139 140 2.151049 CTCGGACCCGGTCTTCGTTT 62.151 60.000 17.27 0.00 40.25 3.60
140 141 2.025418 CGGACCCGGTCTTCGTTTG 61.025 63.158 17.27 0.00 37.11 2.93
141 142 1.070275 GGACCCGGTCTTCGTTTGT 59.930 57.895 17.27 0.00 37.11 2.83
142 143 0.947660 GGACCCGGTCTTCGTTTGTC 60.948 60.000 17.27 0.00 37.11 3.18
143 144 0.033090 GACCCGGTCTTCGTTTGTCT 59.967 55.000 10.59 0.00 37.11 3.41
144 145 0.466963 ACCCGGTCTTCGTTTGTCTT 59.533 50.000 0.00 0.00 37.11 3.01
145 146 1.134310 ACCCGGTCTTCGTTTGTCTTT 60.134 47.619 0.00 0.00 37.11 2.52
146 147 1.263217 CCCGGTCTTCGTTTGTCTTTG 59.737 52.381 0.00 0.00 37.11 2.77
147 148 1.937899 CCGGTCTTCGTTTGTCTTTGT 59.062 47.619 0.00 0.00 37.11 2.83
148 149 2.353579 CCGGTCTTCGTTTGTCTTTGTT 59.646 45.455 0.00 0.00 37.11 2.83
149 150 3.545426 CCGGTCTTCGTTTGTCTTTGTTC 60.545 47.826 0.00 0.00 37.11 3.18
150 151 3.604392 GGTCTTCGTTTGTCTTTGTTCG 58.396 45.455 0.00 0.00 0.00 3.95
151 152 3.063045 GGTCTTCGTTTGTCTTTGTTCGT 59.937 43.478 0.00 0.00 0.00 3.85
152 153 4.019867 GTCTTCGTTTGTCTTTGTTCGTG 58.980 43.478 0.00 0.00 0.00 4.35
153 154 3.680937 TCTTCGTTTGTCTTTGTTCGTGT 59.319 39.130 0.00 0.00 0.00 4.49
154 155 3.377434 TCGTTTGTCTTTGTTCGTGTG 57.623 42.857 0.00 0.00 0.00 3.82
155 156 2.737783 TCGTTTGTCTTTGTTCGTGTGT 59.262 40.909 0.00 0.00 0.00 3.72
156 157 3.088552 CGTTTGTCTTTGTTCGTGTGTC 58.911 45.455 0.00 0.00 0.00 3.67
157 158 3.181524 CGTTTGTCTTTGTTCGTGTGTCT 60.182 43.478 0.00 0.00 0.00 3.41
158 159 4.668177 CGTTTGTCTTTGTTCGTGTGTCTT 60.668 41.667 0.00 0.00 0.00 3.01
159 160 4.593597 TTGTCTTTGTTCGTGTGTCTTC 57.406 40.909 0.00 0.00 0.00 2.87
160 161 3.591023 TGTCTTTGTTCGTGTGTCTTCA 58.409 40.909 0.00 0.00 0.00 3.02
161 162 3.616821 TGTCTTTGTTCGTGTGTCTTCAG 59.383 43.478 0.00 0.00 0.00 3.02
162 163 3.001330 GTCTTTGTTCGTGTGTCTTCAGG 59.999 47.826 0.00 0.00 0.00 3.86
163 164 2.684001 TTGTTCGTGTGTCTTCAGGT 57.316 45.000 0.00 0.00 0.00 4.00
164 165 2.218953 TGTTCGTGTGTCTTCAGGTC 57.781 50.000 0.00 0.00 0.00 3.85
165 166 1.478916 TGTTCGTGTGTCTTCAGGTCA 59.521 47.619 0.00 0.00 0.00 4.02
166 167 2.128035 GTTCGTGTGTCTTCAGGTCAG 58.872 52.381 0.00 0.00 0.00 3.51
167 168 1.687563 TCGTGTGTCTTCAGGTCAGA 58.312 50.000 0.00 0.00 0.00 3.27
168 169 2.239400 TCGTGTGTCTTCAGGTCAGAT 58.761 47.619 0.00 0.00 0.00 2.90
169 170 2.229062 TCGTGTGTCTTCAGGTCAGATC 59.771 50.000 0.00 0.00 0.00 2.75
170 171 2.029918 CGTGTGTCTTCAGGTCAGATCA 60.030 50.000 0.00 0.00 0.00 2.92
171 172 3.367806 CGTGTGTCTTCAGGTCAGATCAT 60.368 47.826 0.00 0.00 0.00 2.45
172 173 4.573900 GTGTGTCTTCAGGTCAGATCATT 58.426 43.478 0.00 0.00 0.00 2.57
173 174 4.999950 GTGTGTCTTCAGGTCAGATCATTT 59.000 41.667 0.00 0.00 0.00 2.32
174 175 5.121454 GTGTGTCTTCAGGTCAGATCATTTC 59.879 44.000 0.00 0.00 0.00 2.17
175 176 4.328440 GTGTCTTCAGGTCAGATCATTTCG 59.672 45.833 0.00 0.00 0.00 3.46
176 177 4.220602 TGTCTTCAGGTCAGATCATTTCGA 59.779 41.667 0.00 0.00 0.00 3.71
177 178 5.105187 TGTCTTCAGGTCAGATCATTTCGAT 60.105 40.000 0.00 0.00 36.91 3.59
188 189 5.739237 GATCATTTCGATCTACGCTTCTC 57.261 43.478 0.00 0.00 46.16 2.87
189 190 4.902443 TCATTTCGATCTACGCTTCTCT 57.098 40.909 0.00 0.00 42.26 3.10
190 191 5.250235 TCATTTCGATCTACGCTTCTCTT 57.750 39.130 0.00 0.00 42.26 2.85
191 192 5.274718 TCATTTCGATCTACGCTTCTCTTC 58.725 41.667 0.00 0.00 42.26 2.87
192 193 4.696899 TTTCGATCTACGCTTCTCTTCA 57.303 40.909 0.00 0.00 42.26 3.02
193 194 4.902443 TTCGATCTACGCTTCTCTTCAT 57.098 40.909 0.00 0.00 42.26 2.57
194 195 4.475763 TCGATCTACGCTTCTCTTCATC 57.524 45.455 0.00 0.00 42.26 2.92
195 196 3.059529 TCGATCTACGCTTCTCTTCATCG 60.060 47.826 0.00 0.00 42.26 3.84
196 197 3.059529 CGATCTACGCTTCTCTTCATCGA 60.060 47.826 0.00 0.00 35.08 3.59
197 198 3.677190 TCTACGCTTCTCTTCATCGAC 57.323 47.619 0.00 0.00 0.00 4.20
198 199 2.030579 TCTACGCTTCTCTTCATCGACG 59.969 50.000 0.00 0.00 0.00 5.12
199 200 0.803117 ACGCTTCTCTTCATCGACGA 59.197 50.000 0.00 0.00 0.00 4.20
200 201 1.184349 CGCTTCTCTTCATCGACGAC 58.816 55.000 0.00 0.00 0.00 4.34
201 202 1.184349 GCTTCTCTTCATCGACGACG 58.816 55.000 0.00 0.00 41.26 5.12
202 203 1.816370 CTTCTCTTCATCGACGACGG 58.184 55.000 7.55 0.00 40.21 4.79
203 204 1.130749 CTTCTCTTCATCGACGACGGT 59.869 52.381 7.55 0.00 40.21 4.83
204 205 1.162698 TCTCTTCATCGACGACGGTT 58.837 50.000 7.55 0.00 40.21 4.44
205 206 1.135774 TCTCTTCATCGACGACGGTTG 60.136 52.381 7.55 6.17 40.21 3.77
206 207 0.876399 TCTTCATCGACGACGGTTGA 59.124 50.000 7.55 8.40 40.79 3.18
207 208 1.471287 TCTTCATCGACGACGGTTGAT 59.529 47.619 7.55 0.00 46.17 2.57
208 209 2.679336 TCTTCATCGACGACGGTTGATA 59.321 45.455 7.55 1.19 43.93 2.15
209 210 3.314357 TCTTCATCGACGACGGTTGATAT 59.686 43.478 7.55 0.00 43.93 1.63
210 211 3.703286 TCATCGACGACGGTTGATATT 57.297 42.857 7.55 0.00 43.93 1.28
211 212 3.624900 TCATCGACGACGGTTGATATTC 58.375 45.455 7.55 0.00 43.93 1.75
212 213 3.314357 TCATCGACGACGGTTGATATTCT 59.686 43.478 7.55 0.00 43.93 2.40
213 214 3.060978 TCGACGACGGTTGATATTCTG 57.939 47.619 7.55 0.00 40.21 3.02
214 215 2.117137 CGACGACGGTTGATATTCTGG 58.883 52.381 1.53 0.00 35.72 3.86
215 216 2.479049 CGACGACGGTTGATATTCTGGT 60.479 50.000 1.53 0.00 35.72 4.00
216 217 2.858344 GACGACGGTTGATATTCTGGTG 59.142 50.000 1.53 0.00 0.00 4.17
217 218 2.232941 ACGACGGTTGATATTCTGGTGT 59.767 45.455 1.53 0.00 0.00 4.16
218 219 2.603110 CGACGGTTGATATTCTGGTGTG 59.397 50.000 0.00 0.00 0.00 3.82
219 220 3.596214 GACGGTTGATATTCTGGTGTGT 58.404 45.455 0.00 0.00 0.00 3.72
220 221 4.000988 GACGGTTGATATTCTGGTGTGTT 58.999 43.478 0.00 0.00 0.00 3.32
221 222 3.751175 ACGGTTGATATTCTGGTGTGTTG 59.249 43.478 0.00 0.00 0.00 3.33
222 223 3.126858 CGGTTGATATTCTGGTGTGTTGG 59.873 47.826 0.00 0.00 0.00 3.77
223 224 4.079253 GGTTGATATTCTGGTGTGTTGGT 58.921 43.478 0.00 0.00 0.00 3.67
224 225 4.156008 GGTTGATATTCTGGTGTGTTGGTC 59.844 45.833 0.00 0.00 0.00 4.02
225 226 4.908601 TGATATTCTGGTGTGTTGGTCT 57.091 40.909 0.00 0.00 0.00 3.85
226 227 5.241403 TGATATTCTGGTGTGTTGGTCTT 57.759 39.130 0.00 0.00 0.00 3.01
227 228 6.367374 TGATATTCTGGTGTGTTGGTCTTA 57.633 37.500 0.00 0.00 0.00 2.10
228 229 6.957631 TGATATTCTGGTGTGTTGGTCTTAT 58.042 36.000 0.00 0.00 0.00 1.73
229 230 6.823182 TGATATTCTGGTGTGTTGGTCTTATG 59.177 38.462 0.00 0.00 0.00 1.90
230 231 4.431416 TTCTGGTGTGTTGGTCTTATGT 57.569 40.909 0.00 0.00 0.00 2.29
231 232 3.738982 TCTGGTGTGTTGGTCTTATGTG 58.261 45.455 0.00 0.00 0.00 3.21
232 233 2.813754 CTGGTGTGTTGGTCTTATGTGG 59.186 50.000 0.00 0.00 0.00 4.17
233 234 1.539827 GGTGTGTTGGTCTTATGTGGC 59.460 52.381 0.00 0.00 0.00 5.01
234 235 1.539827 GTGTGTTGGTCTTATGTGGCC 59.460 52.381 0.00 0.00 0.00 5.36
235 236 1.423541 TGTGTTGGTCTTATGTGGCCT 59.576 47.619 3.32 0.00 0.00 5.19
236 237 1.812571 GTGTTGGTCTTATGTGGCCTG 59.187 52.381 3.32 0.00 0.00 4.85
237 238 1.702401 TGTTGGTCTTATGTGGCCTGA 59.298 47.619 3.32 0.00 0.00 3.86
238 239 2.290260 TGTTGGTCTTATGTGGCCTGAG 60.290 50.000 3.32 0.00 0.00 3.35
239 240 0.253044 TGGTCTTATGTGGCCTGAGC 59.747 55.000 3.32 3.25 38.76 4.26
240 241 0.253044 GGTCTTATGTGGCCTGAGCA 59.747 55.000 3.32 0.00 42.56 4.26
241 242 1.373570 GTCTTATGTGGCCTGAGCAC 58.626 55.000 3.32 0.00 42.56 4.40
242 243 0.108186 TCTTATGTGGCCTGAGCACG 60.108 55.000 3.32 0.00 42.56 5.34
243 244 0.108186 CTTATGTGGCCTGAGCACGA 60.108 55.000 3.32 0.00 42.56 4.35
244 245 0.391130 TTATGTGGCCTGAGCACGAC 60.391 55.000 3.32 0.00 42.56 4.34
245 246 2.557059 TATGTGGCCTGAGCACGACG 62.557 60.000 3.32 0.00 42.56 5.12
246 247 4.357947 GTGGCCTGAGCACGACGA 62.358 66.667 3.32 0.00 42.56 4.20
247 248 3.381983 TGGCCTGAGCACGACGAT 61.382 61.111 3.32 0.00 42.56 3.73
248 249 2.125512 GGCCTGAGCACGACGATT 60.126 61.111 0.00 0.00 42.56 3.34
249 250 1.741770 GGCCTGAGCACGACGATTT 60.742 57.895 0.00 0.00 42.56 2.17
250 251 1.298859 GGCCTGAGCACGACGATTTT 61.299 55.000 0.00 0.00 42.56 1.82
251 252 0.517316 GCCTGAGCACGACGATTTTT 59.483 50.000 0.00 0.00 39.53 1.94
252 253 1.464189 GCCTGAGCACGACGATTTTTC 60.464 52.381 0.00 0.00 39.53 2.29
253 254 1.201812 CCTGAGCACGACGATTTTTCG 60.202 52.381 0.00 0.00 42.36 3.46
254 255 1.719246 CTGAGCACGACGATTTTTCGA 59.281 47.619 0.00 0.00 39.83 3.71
255 256 1.454276 TGAGCACGACGATTTTTCGAC 59.546 47.619 0.00 0.00 39.83 4.20
256 257 1.719780 GAGCACGACGATTTTTCGACT 59.280 47.619 0.00 0.00 39.83 4.18
257 258 1.455786 AGCACGACGATTTTTCGACTG 59.544 47.619 0.00 0.00 39.83 3.51
258 259 1.191647 GCACGACGATTTTTCGACTGT 59.808 47.619 0.00 0.00 39.83 3.55
259 260 2.348218 GCACGACGATTTTTCGACTGTT 60.348 45.455 0.00 0.00 39.83 3.16
260 261 3.843510 GCACGACGATTTTTCGACTGTTT 60.844 43.478 0.00 0.00 39.83 2.83
261 262 4.606673 GCACGACGATTTTTCGACTGTTTA 60.607 41.667 0.00 0.00 39.83 2.01
262 263 4.831779 CACGACGATTTTTCGACTGTTTAC 59.168 41.667 0.00 0.00 39.83 2.01
263 264 4.741676 ACGACGATTTTTCGACTGTTTACT 59.258 37.500 0.00 0.00 39.83 2.24
264 265 5.914635 ACGACGATTTTTCGACTGTTTACTA 59.085 36.000 0.00 0.00 39.83 1.82
265 266 6.583806 ACGACGATTTTTCGACTGTTTACTAT 59.416 34.615 0.00 0.00 39.83 2.12
266 267 7.750458 ACGACGATTTTTCGACTGTTTACTATA 59.250 33.333 0.00 0.00 39.83 1.31
267 268 8.577939 CGACGATTTTTCGACTGTTTACTATAA 58.422 33.333 1.96 0.00 38.85 0.98
282 283 9.661563 TGTTTACTATAATAAGTTGTGACCTGG 57.338 33.333 0.00 0.00 0.00 4.45
283 284 8.610035 GTTTACTATAATAAGTTGTGACCTGGC 58.390 37.037 0.00 0.00 0.00 4.85
284 285 6.561519 ACTATAATAAGTTGTGACCTGGCT 57.438 37.500 0.00 0.00 0.00 4.75
285 286 6.583562 ACTATAATAAGTTGTGACCTGGCTC 58.416 40.000 0.00 0.00 0.00 4.70
286 287 5.700402 ATAATAAGTTGTGACCTGGCTCT 57.300 39.130 0.00 0.00 0.00 4.09
287 288 2.839486 TAAGTTGTGACCTGGCTCTG 57.161 50.000 0.00 0.00 0.00 3.35
288 289 0.109342 AAGTTGTGACCTGGCTCTGG 59.891 55.000 0.00 0.00 0.00 3.86
289 290 1.056700 AGTTGTGACCTGGCTCTGGT 61.057 55.000 0.00 3.91 38.38 4.00
290 291 0.886490 GTTGTGACCTGGCTCTGGTG 60.886 60.000 8.18 0.00 35.85 4.17
291 292 1.053835 TTGTGACCTGGCTCTGGTGA 61.054 55.000 8.18 0.00 35.85 4.02
292 293 1.294780 GTGACCTGGCTCTGGTGAG 59.705 63.158 8.18 0.00 42.96 3.51
293 294 1.915266 TGACCTGGCTCTGGTGAGG 60.915 63.158 8.18 0.00 40.53 3.86
294 295 2.608988 ACCTGGCTCTGGTGAGGG 60.609 66.667 0.00 0.00 40.53 4.30
295 296 2.284921 CCTGGCTCTGGTGAGGGA 60.285 66.667 0.00 0.00 40.53 4.20
296 297 2.365586 CCTGGCTCTGGTGAGGGAG 61.366 68.421 0.00 0.00 40.53 4.30
297 298 2.284921 TGGCTCTGGTGAGGGAGG 60.285 66.667 0.00 0.00 40.53 4.30
298 299 3.086600 GGCTCTGGTGAGGGAGGG 61.087 72.222 0.00 0.00 40.53 4.30
299 300 3.086600 GCTCTGGTGAGGGAGGGG 61.087 72.222 0.00 0.00 40.53 4.79
300 301 3.086600 CTCTGGTGAGGGAGGGGC 61.087 72.222 0.00 0.00 36.70 5.80
303 304 4.414956 TGGTGAGGGAGGGGCGAT 62.415 66.667 0.00 0.00 0.00 4.58
304 305 3.866582 GGTGAGGGAGGGGCGATG 61.867 72.222 0.00 0.00 0.00 3.84
305 306 2.764128 GTGAGGGAGGGGCGATGA 60.764 66.667 0.00 0.00 0.00 2.92
306 307 2.040442 TGAGGGAGGGGCGATGAA 59.960 61.111 0.00 0.00 0.00 2.57
307 308 1.615124 TGAGGGAGGGGCGATGAAA 60.615 57.895 0.00 0.00 0.00 2.69
308 309 1.147153 GAGGGAGGGGCGATGAAAG 59.853 63.158 0.00 0.00 0.00 2.62
309 310 1.616628 AGGGAGGGGCGATGAAAGT 60.617 57.895 0.00 0.00 0.00 2.66
310 311 1.452108 GGGAGGGGCGATGAAAGTG 60.452 63.158 0.00 0.00 0.00 3.16
311 312 1.452108 GGAGGGGCGATGAAAGTGG 60.452 63.158 0.00 0.00 0.00 4.00
312 313 2.044946 AGGGGCGATGAAAGTGGC 60.045 61.111 0.00 0.00 0.00 5.01
313 314 2.361104 GGGGCGATGAAAGTGGCA 60.361 61.111 0.00 0.00 0.00 4.92
314 315 2.700773 GGGGCGATGAAAGTGGCAC 61.701 63.158 10.29 10.29 0.00 5.01
315 316 2.480555 GGCGATGAAAGTGGCACG 59.519 61.111 12.71 0.00 0.00 5.34
316 317 2.202349 GCGATGAAAGTGGCACGC 60.202 61.111 12.71 6.30 39.33 5.34
325 326 4.090057 GTGGCACGCTTTCGGCTC 62.090 66.667 0.00 0.00 40.69 4.70
326 327 4.617520 TGGCACGCTTTCGGCTCA 62.618 61.111 0.00 0.00 40.69 4.26
327 328 3.353836 GGCACGCTTTCGGCTCAA 61.354 61.111 0.00 0.00 40.69 3.02
328 329 2.690778 GGCACGCTTTCGGCTCAAT 61.691 57.895 0.00 0.00 40.69 2.57
329 330 1.210155 GCACGCTTTCGGCTCAATT 59.790 52.632 0.00 0.00 40.69 2.32
330 331 0.794605 GCACGCTTTCGGCTCAATTC 60.795 55.000 0.00 0.00 40.69 2.17
331 332 0.516877 CACGCTTTCGGCTCAATTCA 59.483 50.000 0.00 0.00 40.69 2.57
332 333 0.798776 ACGCTTTCGGCTCAATTCAG 59.201 50.000 0.00 0.00 40.69 3.02
333 334 0.798776 CGCTTTCGGCTCAATTCAGT 59.201 50.000 0.00 0.00 39.13 3.41
334 335 1.464687 CGCTTTCGGCTCAATTCAGTG 60.465 52.381 0.00 0.00 39.13 3.66
335 336 1.730446 GCTTTCGGCTCAATTCAGTGC 60.730 52.381 0.00 0.00 38.06 4.40
336 337 1.808945 CTTTCGGCTCAATTCAGTGCT 59.191 47.619 0.00 0.00 0.00 4.40
337 338 1.896220 TTCGGCTCAATTCAGTGCTT 58.104 45.000 0.00 0.00 0.00 3.91
338 339 1.159285 TCGGCTCAATTCAGTGCTTG 58.841 50.000 0.00 0.00 0.00 4.01
339 340 0.877071 CGGCTCAATTCAGTGCTTGT 59.123 50.000 5.51 0.00 0.00 3.16
340 341 2.076100 CGGCTCAATTCAGTGCTTGTA 58.924 47.619 5.51 0.00 0.00 2.41
341 342 2.094894 CGGCTCAATTCAGTGCTTGTAG 59.905 50.000 5.51 4.08 0.00 2.74
342 343 3.077359 GGCTCAATTCAGTGCTTGTAGT 58.923 45.455 5.51 0.00 0.00 2.73
343 344 3.503748 GGCTCAATTCAGTGCTTGTAGTT 59.496 43.478 5.51 0.00 0.00 2.24
344 345 4.470462 GCTCAATTCAGTGCTTGTAGTTG 58.530 43.478 5.51 0.00 0.00 3.16
345 346 4.023707 GCTCAATTCAGTGCTTGTAGTTGT 60.024 41.667 5.51 0.00 0.00 3.32
346 347 5.506317 GCTCAATTCAGTGCTTGTAGTTGTT 60.506 40.000 5.51 0.00 0.00 2.83
347 348 5.820131 TCAATTCAGTGCTTGTAGTTGTTG 58.180 37.500 5.51 0.00 0.00 3.33
348 349 3.691049 TTCAGTGCTTGTAGTTGTTGC 57.309 42.857 0.00 0.00 0.00 4.17
349 350 2.917933 TCAGTGCTTGTAGTTGTTGCT 58.082 42.857 0.00 0.00 0.00 3.91
350 351 4.066646 TCAGTGCTTGTAGTTGTTGCTA 57.933 40.909 0.00 0.00 0.00 3.49
351 352 4.058124 TCAGTGCTTGTAGTTGTTGCTAG 58.942 43.478 0.00 0.00 0.00 3.42
352 353 3.809832 CAGTGCTTGTAGTTGTTGCTAGT 59.190 43.478 0.00 0.00 0.00 2.57
353 354 4.058817 AGTGCTTGTAGTTGTTGCTAGTC 58.941 43.478 0.00 0.00 0.00 2.59
354 355 3.057019 TGCTTGTAGTTGTTGCTAGTCG 58.943 45.455 0.00 0.00 0.00 4.18
355 356 2.412089 GCTTGTAGTTGTTGCTAGTCGG 59.588 50.000 0.00 0.00 0.00 4.79
356 357 3.650139 CTTGTAGTTGTTGCTAGTCGGT 58.350 45.455 0.00 0.00 0.00 4.69
357 358 3.021269 TGTAGTTGTTGCTAGTCGGTG 57.979 47.619 0.00 0.00 0.00 4.94
358 359 2.363038 TGTAGTTGTTGCTAGTCGGTGT 59.637 45.455 0.00 0.00 0.00 4.16
359 360 3.569277 TGTAGTTGTTGCTAGTCGGTGTA 59.431 43.478 0.00 0.00 0.00 2.90
360 361 3.022607 AGTTGTTGCTAGTCGGTGTAC 57.977 47.619 0.00 0.00 0.00 2.90
361 362 1.717645 GTTGTTGCTAGTCGGTGTACG 59.282 52.381 0.00 0.00 46.11 3.67
362 363 0.241749 TGTTGCTAGTCGGTGTACGG 59.758 55.000 0.00 0.00 44.45 4.02
363 364 0.523072 GTTGCTAGTCGGTGTACGGA 59.477 55.000 0.00 0.00 44.45 4.69
364 365 1.133790 GTTGCTAGTCGGTGTACGGAT 59.866 52.381 0.00 0.00 44.45 4.18
365 366 1.019673 TGCTAGTCGGTGTACGGATC 58.980 55.000 0.00 0.00 44.45 3.36
366 367 1.307097 GCTAGTCGGTGTACGGATCT 58.693 55.000 0.00 0.00 44.45 2.75
367 368 1.002684 GCTAGTCGGTGTACGGATCTG 60.003 57.143 0.00 0.00 44.45 2.90
368 369 2.558378 CTAGTCGGTGTACGGATCTGA 58.442 52.381 9.00 0.00 44.45 3.27
369 370 1.830279 AGTCGGTGTACGGATCTGAA 58.170 50.000 9.00 0.00 44.45 3.02
370 371 2.376109 AGTCGGTGTACGGATCTGAAT 58.624 47.619 9.00 0.00 44.45 2.57
371 372 2.099263 AGTCGGTGTACGGATCTGAATG 59.901 50.000 9.00 0.00 44.45 2.67
372 373 1.202371 TCGGTGTACGGATCTGAATGC 60.202 52.381 9.00 0.00 44.45 3.56
373 374 1.470805 CGGTGTACGGATCTGAATGCA 60.471 52.381 9.00 0.00 39.42 3.96
374 375 2.627945 GGTGTACGGATCTGAATGCAA 58.372 47.619 9.00 0.00 0.00 4.08
375 376 3.206150 GGTGTACGGATCTGAATGCAAT 58.794 45.455 9.00 0.00 0.00 3.56
376 377 3.627577 GGTGTACGGATCTGAATGCAATT 59.372 43.478 9.00 0.00 40.93 2.32
377 378 4.096382 GGTGTACGGATCTGAATGCAATTT 59.904 41.667 9.00 0.00 36.07 1.82
378 379 5.393027 GGTGTACGGATCTGAATGCAATTTT 60.393 40.000 9.00 0.00 36.07 1.82
379 380 6.092748 GTGTACGGATCTGAATGCAATTTTT 58.907 36.000 9.00 0.00 36.07 1.94
380 381 7.247728 GTGTACGGATCTGAATGCAATTTTTA 58.752 34.615 9.00 0.00 36.07 1.52
381 382 7.915397 GTGTACGGATCTGAATGCAATTTTTAT 59.085 33.333 9.00 0.00 36.07 1.40
382 383 8.465999 TGTACGGATCTGAATGCAATTTTTATT 58.534 29.630 9.00 0.00 36.07 1.40
383 384 9.944663 GTACGGATCTGAATGCAATTTTTATTA 57.055 29.630 9.00 0.00 36.07 0.98
402 403 8.735303 TTTATTATTTGTGATGTTCGTTGTGG 57.265 30.769 0.00 0.00 0.00 4.17
403 404 5.759506 TTATTTGTGATGTTCGTTGTGGT 57.240 34.783 0.00 0.00 0.00 4.16
404 405 3.412981 TTTGTGATGTTCGTTGTGGTG 57.587 42.857 0.00 0.00 0.00 4.17
405 406 2.031258 TGTGATGTTCGTTGTGGTGT 57.969 45.000 0.00 0.00 0.00 4.16
406 407 1.937223 TGTGATGTTCGTTGTGGTGTC 59.063 47.619 0.00 0.00 0.00 3.67
407 408 1.937223 GTGATGTTCGTTGTGGTGTCA 59.063 47.619 0.00 0.00 0.00 3.58
408 409 2.548057 GTGATGTTCGTTGTGGTGTCAT 59.452 45.455 0.00 0.00 0.00 3.06
409 410 2.547634 TGATGTTCGTTGTGGTGTCATG 59.452 45.455 0.00 0.00 0.00 3.07
410 411 2.317530 TGTTCGTTGTGGTGTCATGA 57.682 45.000 0.00 0.00 0.00 3.07
411 412 2.844946 TGTTCGTTGTGGTGTCATGAT 58.155 42.857 0.00 0.00 0.00 2.45
412 413 3.210227 TGTTCGTTGTGGTGTCATGATT 58.790 40.909 0.00 0.00 0.00 2.57
413 414 3.003171 TGTTCGTTGTGGTGTCATGATTG 59.997 43.478 0.00 0.00 0.00 2.67
414 415 3.118905 TCGTTGTGGTGTCATGATTGA 57.881 42.857 0.00 0.00 0.00 2.57
415 416 3.471680 TCGTTGTGGTGTCATGATTGAA 58.528 40.909 0.00 0.00 32.48 2.69
416 417 3.498018 TCGTTGTGGTGTCATGATTGAAG 59.502 43.478 0.00 0.00 32.48 3.02
417 418 3.498018 CGTTGTGGTGTCATGATTGAAGA 59.502 43.478 0.00 0.00 32.48 2.87
418 419 4.611355 CGTTGTGGTGTCATGATTGAAGAC 60.611 45.833 0.00 0.00 32.48 3.01
419 420 4.084011 TGTGGTGTCATGATTGAAGACA 57.916 40.909 0.00 0.00 39.74 3.41
420 421 4.459330 TGTGGTGTCATGATTGAAGACAA 58.541 39.130 0.00 0.00 43.16 3.18
421 422 4.886489 TGTGGTGTCATGATTGAAGACAAA 59.114 37.500 0.00 0.00 43.16 2.83
422 423 5.535783 TGTGGTGTCATGATTGAAGACAAAT 59.464 36.000 0.00 0.00 43.16 2.32
423 424 6.714356 TGTGGTGTCATGATTGAAGACAAATA 59.286 34.615 0.00 0.00 43.16 1.40
424 425 7.094677 TGTGGTGTCATGATTGAAGACAAATAG 60.095 37.037 0.00 0.00 43.16 1.73
425 426 7.119699 GTGGTGTCATGATTGAAGACAAATAGA 59.880 37.037 0.00 0.00 43.16 1.98
426 427 7.830697 TGGTGTCATGATTGAAGACAAATAGAT 59.169 33.333 0.00 0.00 43.16 1.98
427 428 8.680903 GGTGTCATGATTGAAGACAAATAGATT 58.319 33.333 0.00 0.00 43.16 2.40
469 470 6.875972 AAATCTAATGGCCGGAGAGTATAT 57.124 37.500 5.05 0.00 0.00 0.86
506 507 3.435105 TTATCCATTCCATTGTTGCGC 57.565 42.857 0.00 0.00 0.00 6.09
533 534 7.173218 CAGTAGACCCGTTAATACCGTTATAGA 59.827 40.741 0.00 0.00 0.00 1.98
552 556 4.392921 AGAACGATGATAACCAGGTCTG 57.607 45.455 0.00 0.00 0.00 3.51
587 591 2.031944 GGCAAAGGACTCGACAAAAGTC 60.032 50.000 0.00 0.00 41.98 3.01
673 680 2.785713 GGCTTTACAAAAAGACCGCA 57.214 45.000 2.15 0.00 43.88 5.69
795 802 2.747460 TCAGCAGCACCGCCATTC 60.747 61.111 0.00 0.00 0.00 2.67
807 814 2.488153 ACCGCCATTCTTACAGAAAAGC 59.512 45.455 0.00 0.00 37.82 3.51
826 833 2.519441 CCCCTCCGATCTCCCGTA 59.481 66.667 0.00 0.00 0.00 4.02
845 852 0.812412 ACACAAACGAACCCCTCACG 60.812 55.000 0.00 0.00 0.00 4.35
956 972 3.852536 CGCGTATTTTATTGCGGGAAAAA 59.147 39.130 0.00 0.00 46.31 1.94
992 1008 1.626356 TTTCCATCCGAGCCCCTGAG 61.626 60.000 0.00 0.00 0.00 3.35
1084 1102 0.040351 CTCACTCTCTCTCCACCCCA 59.960 60.000 0.00 0.00 0.00 4.96
1235 1253 1.270518 CGATTCTCGCCATCCAATCCT 60.271 52.381 0.00 0.00 31.14 3.24
1236 1254 2.808202 CGATTCTCGCCATCCAATCCTT 60.808 50.000 0.00 0.00 31.14 3.36
1237 1255 2.332063 TTCTCGCCATCCAATCCTTC 57.668 50.000 0.00 0.00 0.00 3.46
1238 1256 0.469917 TCTCGCCATCCAATCCTTCC 59.530 55.000 0.00 0.00 0.00 3.46
1308 1326 0.890996 CTGCCACCTGTTTGGACTCC 60.891 60.000 0.00 0.00 39.24 3.85
1338 1356 0.740737 ATAACTTGCCTCGCCATTGC 59.259 50.000 0.00 0.00 0.00 3.56
1456 1474 3.391382 CCTCGTTTCGGAGGCCCT 61.391 66.667 0.00 0.00 46.53 5.19
1457 1475 2.184579 CTCGTTTCGGAGGCCCTC 59.815 66.667 0.73 0.73 0.00 4.30
1458 1476 3.701604 CTCGTTTCGGAGGCCCTCG 62.702 68.421 4.29 3.58 0.00 4.63
1801 1826 2.696187 GAGGAAAGGCTTCTCCGACTAT 59.304 50.000 17.17 5.39 40.77 2.12
1873 1898 3.226884 GGTGCTCGTGTACCACAAT 57.773 52.632 18.24 0.00 46.34 2.71
1874 1899 1.519408 GGTGCTCGTGTACCACAATT 58.481 50.000 18.24 0.00 46.34 2.32
1939 1967 2.279784 CTCTCGCCCATTCTCGGC 60.280 66.667 0.00 0.00 43.38 5.54
2087 2121 1.195448 CGCAGTGTGTCTGGTTTGATC 59.805 52.381 0.00 0.00 43.78 2.92
2311 2345 2.350458 GGGCGTCATTGCATTGGGT 61.350 57.895 8.64 0.00 36.28 4.51
2332 2366 2.158682 TCTGTTGGCTTTGCTTCTGGTA 60.159 45.455 0.00 0.00 0.00 3.25
2338 2372 3.255642 TGGCTTTGCTTCTGGTATGTTTC 59.744 43.478 0.00 0.00 0.00 2.78
2487 2521 4.177026 GTGATTGAGAGCGAGTATGTTGT 58.823 43.478 0.00 0.00 0.00 3.32
2488 2522 4.032217 GTGATTGAGAGCGAGTATGTTGTG 59.968 45.833 0.00 0.00 0.00 3.33
2497 2531 5.103000 AGCGAGTATGTTGTGTAGTTGATC 58.897 41.667 0.00 0.00 0.00 2.92
2589 2623 0.951040 CCGGTCAGTTGAGGCAGAAC 60.951 60.000 0.00 0.00 0.00 3.01
2640 2674 1.280998 TGCTAGGTTTAGGGTTCAGCC 59.719 52.381 0.00 0.00 0.00 4.85
2709 2743 5.051816 ACTTGAATTGTTCTGCAATGGTTG 58.948 37.500 0.00 0.00 46.29 3.77
3146 3181 7.395190 TGATGATCCAACCTTGTGATTTAAG 57.605 36.000 0.00 0.00 0.00 1.85
3200 3246 6.836242 ACTTTCCTCTGTCTTCTGAGAAATT 58.164 36.000 0.00 0.00 40.52 1.82
3261 3307 7.041098 ACCTTGTGATTTAACATTCAGTCTGTC 60.041 37.037 0.00 0.00 0.00 3.51
3343 3389 8.737168 TCTTGATGATCGAACCTTATGATTTT 57.263 30.769 0.00 0.00 0.00 1.82
3344 3390 9.177608 TCTTGATGATCGAACCTTATGATTTTT 57.822 29.630 0.00 0.00 0.00 1.94
3512 3559 7.148000 TGGTGTAAGTGTGATCAAACATCAAAA 60.148 33.333 18.32 3.69 31.49 2.44
3564 3612 8.627208 TTCTCTGCTAACAAAAATGAGAGAAT 57.373 30.769 0.00 0.00 39.18 2.40
3616 3664 6.017852 AGTCTGCTGTTTCAAAGTTAGTTAGC 60.018 38.462 0.00 0.00 0.00 3.09
3666 3714 0.676466 TTGTTCGCGAGGCATTGGAT 60.676 50.000 9.59 0.00 0.00 3.41
3748 3797 6.538742 TGCATAAGTCCTGTCTTTAGTATTGC 59.461 38.462 0.00 0.00 0.00 3.56
3762 3811 8.540388 TCTTTAGTATTGCTCATCACCTTTACT 58.460 33.333 0.00 0.00 0.00 2.24
3771 3820 2.781681 TCACCTTTACTTAGGCTGGC 57.218 50.000 0.00 0.00 38.99 4.85
3777 3826 0.550914 TTACTTAGGCTGGCCATGGG 59.449 55.000 15.13 0.00 38.92 4.00
3778 3827 0.623324 TACTTAGGCTGGCCATGGGT 60.623 55.000 15.13 1.59 38.92 4.51
3808 3857 5.985781 TCTGTTTCTCGCACTTTAACAATC 58.014 37.500 0.00 0.00 0.00 2.67
3877 3926 5.940470 AGGTGGAGATACTTGTCACAAAATC 59.060 40.000 4.90 4.90 0.00 2.17
4003 4052 0.676466 TCATGGGTGCACGTTCATCC 60.676 55.000 10.88 10.88 37.74 3.51
4053 4102 3.130516 AGCTGATCATTTCCATGTTGCAG 59.869 43.478 0.00 0.00 32.22 4.41
4168 4217 9.435570 AAACTAGATACCCACATTCTGTACTAT 57.564 33.333 0.00 0.00 0.00 2.12
4197 4251 3.589988 AGAATACGGTGCTGAAGTTGAG 58.410 45.455 0.00 0.00 0.00 3.02
4198 4252 1.726853 ATACGGTGCTGAAGTTGAGC 58.273 50.000 7.45 7.45 36.95 4.26
4199 4253 0.666274 TACGGTGCTGAAGTTGAGCG 60.666 55.000 9.84 0.00 39.47 5.03
4200 4254 1.956170 CGGTGCTGAAGTTGAGCGT 60.956 57.895 9.84 0.00 39.47 5.07
4201 4255 1.498865 CGGTGCTGAAGTTGAGCGTT 61.499 55.000 9.84 0.00 39.47 4.84
4202 4256 0.040958 GGTGCTGAAGTTGAGCGTTG 60.041 55.000 9.84 0.00 39.47 4.10
4203 4257 0.937304 GTGCTGAAGTTGAGCGTTGA 59.063 50.000 9.84 0.00 39.47 3.18
4217 4271 3.628017 AGCGTTGAAAATTTTCCAGACG 58.372 40.909 28.41 28.41 38.64 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.747443 GGGCTAGGCAGGGAGAACC 61.747 68.421 19.14 0.00 40.67 3.62
3 4 2.747443 GGGGCTAGGCAGGGAGAAC 61.747 68.421 19.14 0.00 0.00 3.01
4 5 2.366972 GGGGCTAGGCAGGGAGAA 60.367 66.667 19.14 0.00 0.00 2.87
6 7 4.823732 TGGGGGCTAGGCAGGGAG 62.824 72.222 19.14 0.00 0.00 4.30
7 8 4.122670 ATGGGGGCTAGGCAGGGA 62.123 66.667 19.14 0.00 0.00 4.20
8 9 3.574237 GATGGGGGCTAGGCAGGG 61.574 72.222 19.14 0.00 0.00 4.45
9 10 3.574237 GGATGGGGGCTAGGCAGG 61.574 72.222 19.14 0.00 0.00 4.85
10 11 3.574237 GGGATGGGGGCTAGGCAG 61.574 72.222 19.14 0.00 0.00 4.85
13 14 4.900259 ACCGGGATGGGGGCTAGG 62.900 72.222 6.32 0.00 44.64 3.02
14 15 3.560251 CACCGGGATGGGGGCTAG 61.560 72.222 6.32 0.00 44.64 3.42
22 23 2.629050 CTAGACGCACCACCGGGATG 62.629 65.000 6.32 1.28 38.05 3.51
23 24 2.363276 TAGACGCACCACCGGGAT 60.363 61.111 6.32 0.00 38.05 3.85
24 25 3.066190 CTAGACGCACCACCGGGA 61.066 66.667 6.32 0.00 38.05 5.14
25 26 4.814294 GCTAGACGCACCACCGGG 62.814 72.222 6.32 0.00 38.92 5.73
26 27 4.063967 TGCTAGACGCACCACCGG 62.064 66.667 0.00 0.00 45.47 5.28
34 35 0.317436 CCTCTGACGATGCTAGACGC 60.317 60.000 0.00 0.00 39.77 5.19
35 36 0.309302 CCCTCTGACGATGCTAGACG 59.691 60.000 0.00 0.00 0.00 4.18
36 37 1.066303 CACCCTCTGACGATGCTAGAC 59.934 57.143 0.00 0.00 0.00 2.59
37 38 1.341089 ACACCCTCTGACGATGCTAGA 60.341 52.381 0.00 0.00 0.00 2.43
38 39 1.107114 ACACCCTCTGACGATGCTAG 58.893 55.000 0.00 0.00 0.00 3.42
39 40 0.817654 CACACCCTCTGACGATGCTA 59.182 55.000 0.00 0.00 0.00 3.49
40 41 1.188219 ACACACCCTCTGACGATGCT 61.188 55.000 0.00 0.00 0.00 3.79
41 42 1.016130 CACACACCCTCTGACGATGC 61.016 60.000 0.00 0.00 0.00 3.91
42 43 0.390340 CCACACACCCTCTGACGATG 60.390 60.000 0.00 0.00 0.00 3.84
43 44 0.541998 TCCACACACCCTCTGACGAT 60.542 55.000 0.00 0.00 0.00 3.73
44 45 1.152631 TCCACACACCCTCTGACGA 60.153 57.895 0.00 0.00 0.00 4.20
45 46 1.290324 CTCCACACACCCTCTGACG 59.710 63.158 0.00 0.00 0.00 4.35
46 47 1.122019 ACCTCCACACACCCTCTGAC 61.122 60.000 0.00 0.00 0.00 3.51
47 48 1.121407 CACCTCCACACACCCTCTGA 61.121 60.000 0.00 0.00 0.00 3.27
48 49 1.372683 CACCTCCACACACCCTCTG 59.627 63.158 0.00 0.00 0.00 3.35
49 50 1.074471 ACACCTCCACACACCCTCT 60.074 57.895 0.00 0.00 0.00 3.69
50 51 1.071471 CACACCTCCACACACCCTC 59.929 63.158 0.00 0.00 0.00 4.30
51 52 1.692749 ACACACCTCCACACACCCT 60.693 57.895 0.00 0.00 0.00 4.34
52 53 1.227853 GACACACCTCCACACACCC 60.228 63.158 0.00 0.00 0.00 4.61
53 54 0.532862 CAGACACACCTCCACACACC 60.533 60.000 0.00 0.00 0.00 4.16
54 55 1.160329 GCAGACACACCTCCACACAC 61.160 60.000 0.00 0.00 0.00 3.82
55 56 1.146041 GCAGACACACCTCCACACA 59.854 57.895 0.00 0.00 0.00 3.72
56 57 1.956170 CGCAGACACACCTCCACAC 60.956 63.158 0.00 0.00 0.00 3.82
57 58 2.421314 CGCAGACACACCTCCACA 59.579 61.111 0.00 0.00 0.00 4.17
58 59 2.357517 CCGCAGACACACCTCCAC 60.358 66.667 0.00 0.00 0.00 4.02
59 60 4.314440 GCCGCAGACACACCTCCA 62.314 66.667 0.00 0.00 0.00 3.86
63 64 4.760047 ATCCGCCGCAGACACACC 62.760 66.667 0.00 0.00 0.00 4.16
64 65 3.188786 GATCCGCCGCAGACACAC 61.189 66.667 0.00 0.00 0.00 3.82
65 66 3.356639 GAGATCCGCCGCAGACACA 62.357 63.158 0.00 0.00 0.00 3.72
66 67 2.583593 GAGATCCGCCGCAGACAC 60.584 66.667 0.00 0.00 0.00 3.67
67 68 4.193334 CGAGATCCGCCGCAGACA 62.193 66.667 0.00 0.00 0.00 3.41
76 77 1.372251 CTGAATCCCGCGAGATCCG 60.372 63.158 8.23 0.00 42.21 4.18
77 78 0.319125 GACTGAATCCCGCGAGATCC 60.319 60.000 8.23 0.00 0.00 3.36
78 79 0.661780 CGACTGAATCCCGCGAGATC 60.662 60.000 8.23 0.00 0.00 2.75
79 80 1.101635 TCGACTGAATCCCGCGAGAT 61.102 55.000 8.23 0.65 0.00 2.75
80 81 1.101635 ATCGACTGAATCCCGCGAGA 61.102 55.000 8.23 0.00 34.25 4.04
81 82 0.936764 CATCGACTGAATCCCGCGAG 60.937 60.000 8.23 0.00 34.25 5.03
82 83 1.065764 CATCGACTGAATCCCGCGA 59.934 57.895 8.23 0.00 35.32 5.87
83 84 1.951130 CCATCGACTGAATCCCGCG 60.951 63.158 0.00 0.00 0.00 6.46
84 85 0.462047 AACCATCGACTGAATCCCGC 60.462 55.000 0.00 0.00 0.00 6.13
85 86 1.290203 CAACCATCGACTGAATCCCG 58.710 55.000 0.00 0.00 0.00 5.14
86 87 2.093447 AGACAACCATCGACTGAATCCC 60.093 50.000 0.00 0.00 0.00 3.85
87 88 3.252974 AGACAACCATCGACTGAATCC 57.747 47.619 0.00 0.00 0.00 3.01
88 89 4.142816 CCAAAGACAACCATCGACTGAATC 60.143 45.833 0.00 0.00 0.00 2.52
89 90 3.753272 CCAAAGACAACCATCGACTGAAT 59.247 43.478 0.00 0.00 0.00 2.57
90 91 3.138304 CCAAAGACAACCATCGACTGAA 58.862 45.455 0.00 0.00 0.00 3.02
91 92 2.104111 ACCAAAGACAACCATCGACTGA 59.896 45.455 0.00 0.00 0.00 3.41
92 93 2.224079 CACCAAAGACAACCATCGACTG 59.776 50.000 0.00 0.00 0.00 3.51
93 94 2.494059 CACCAAAGACAACCATCGACT 58.506 47.619 0.00 0.00 0.00 4.18
94 95 1.535462 CCACCAAAGACAACCATCGAC 59.465 52.381 0.00 0.00 0.00 4.20
95 96 1.418264 TCCACCAAAGACAACCATCGA 59.582 47.619 0.00 0.00 0.00 3.59
96 97 1.890876 TCCACCAAAGACAACCATCG 58.109 50.000 0.00 0.00 0.00 3.84
97 98 2.420022 CGATCCACCAAAGACAACCATC 59.580 50.000 0.00 0.00 0.00 3.51
98 99 2.224769 ACGATCCACCAAAGACAACCAT 60.225 45.455 0.00 0.00 0.00 3.55
99 100 1.142060 ACGATCCACCAAAGACAACCA 59.858 47.619 0.00 0.00 0.00 3.67
100 101 1.804748 GACGATCCACCAAAGACAACC 59.195 52.381 0.00 0.00 0.00 3.77
101 102 2.737252 GAGACGATCCACCAAAGACAAC 59.263 50.000 0.00 0.00 0.00 3.32
102 103 2.609491 CGAGACGATCCACCAAAGACAA 60.609 50.000 0.00 0.00 0.00 3.18
103 104 1.067846 CGAGACGATCCACCAAAGACA 60.068 52.381 0.00 0.00 0.00 3.41
104 105 1.630148 CGAGACGATCCACCAAAGAC 58.370 55.000 0.00 0.00 0.00 3.01
105 106 0.530744 CCGAGACGATCCACCAAAGA 59.469 55.000 0.00 0.00 0.00 2.52
106 107 0.530744 TCCGAGACGATCCACCAAAG 59.469 55.000 0.00 0.00 0.00 2.77
107 108 0.245539 GTCCGAGACGATCCACCAAA 59.754 55.000 0.00 0.00 0.00 3.28
108 109 1.601419 GGTCCGAGACGATCCACCAA 61.601 60.000 0.00 0.00 32.65 3.67
109 110 2.050350 GGTCCGAGACGATCCACCA 61.050 63.158 0.00 0.00 32.65 4.17
110 111 2.783288 GGGTCCGAGACGATCCACC 61.783 68.421 0.00 0.00 32.65 4.61
111 112 2.806237 GGGTCCGAGACGATCCAC 59.194 66.667 0.00 0.00 32.65 4.02
112 113 2.827190 CGGGTCCGAGACGATCCA 60.827 66.667 2.83 0.00 42.83 3.41
113 114 3.593794 CCGGGTCCGAGACGATCC 61.594 72.222 11.39 0.00 42.83 3.36
114 115 2.827642 ACCGGGTCCGAGACGATC 60.828 66.667 11.39 0.00 42.83 3.69
115 116 2.827642 GACCGGGTCCGAGACGAT 60.828 66.667 16.55 0.00 42.83 3.73
116 117 3.557903 AAGACCGGGTCCGAGACGA 62.558 63.158 23.21 0.00 42.83 4.20
117 118 3.048941 GAAGACCGGGTCCGAGACG 62.049 68.421 23.21 0.00 42.83 4.18
118 119 2.883621 GAAGACCGGGTCCGAGAC 59.116 66.667 23.21 7.16 42.83 3.36
119 120 2.749044 CGAAGACCGGGTCCGAGA 60.749 66.667 23.21 0.00 42.83 4.04
120 121 2.151049 AAACGAAGACCGGGTCCGAG 62.151 60.000 25.72 18.26 43.93 4.63
121 122 2.202395 AAACGAAGACCGGGTCCGA 61.202 57.895 25.72 0.00 43.93 4.55
122 123 2.025418 CAAACGAAGACCGGGTCCG 61.025 63.158 23.21 21.28 43.93 4.79
123 124 0.947660 GACAAACGAAGACCGGGTCC 60.948 60.000 23.21 8.39 43.93 4.46
124 125 0.033090 AGACAAACGAAGACCGGGTC 59.967 55.000 19.61 19.61 43.93 4.46
125 126 0.466963 AAGACAAACGAAGACCGGGT 59.533 50.000 6.32 0.00 43.93 5.28
126 127 1.263217 CAAAGACAAACGAAGACCGGG 59.737 52.381 6.32 0.00 43.93 5.73
127 128 1.937899 ACAAAGACAAACGAAGACCGG 59.062 47.619 0.00 0.00 43.93 5.28
128 129 3.604392 GAACAAAGACAAACGAAGACCG 58.396 45.455 0.00 0.00 45.44 4.79
129 130 3.063045 ACGAACAAAGACAAACGAAGACC 59.937 43.478 0.00 0.00 0.00 3.85
130 131 4.019867 CACGAACAAAGACAAACGAAGAC 58.980 43.478 0.00 0.00 0.00 3.01
131 132 3.680937 ACACGAACAAAGACAAACGAAGA 59.319 39.130 0.00 0.00 0.00 2.87
132 133 3.778718 CACACGAACAAAGACAAACGAAG 59.221 43.478 0.00 0.00 0.00 3.79
133 134 3.186817 ACACACGAACAAAGACAAACGAA 59.813 39.130 0.00 0.00 0.00 3.85
134 135 2.737783 ACACACGAACAAAGACAAACGA 59.262 40.909 0.00 0.00 0.00 3.85
135 136 3.088552 GACACACGAACAAAGACAAACG 58.911 45.455 0.00 0.00 0.00 3.60
136 137 4.336532 AGACACACGAACAAAGACAAAC 57.663 40.909 0.00 0.00 0.00 2.93
137 138 4.452795 TGAAGACACACGAACAAAGACAAA 59.547 37.500 0.00 0.00 0.00 2.83
138 139 3.997681 TGAAGACACACGAACAAAGACAA 59.002 39.130 0.00 0.00 0.00 3.18
139 140 3.591023 TGAAGACACACGAACAAAGACA 58.409 40.909 0.00 0.00 0.00 3.41
140 141 3.001330 CCTGAAGACACACGAACAAAGAC 59.999 47.826 0.00 0.00 0.00 3.01
141 142 3.194861 CCTGAAGACACACGAACAAAGA 58.805 45.455 0.00 0.00 0.00 2.52
142 143 2.936498 ACCTGAAGACACACGAACAAAG 59.064 45.455 0.00 0.00 0.00 2.77
143 144 2.933906 GACCTGAAGACACACGAACAAA 59.066 45.455 0.00 0.00 0.00 2.83
144 145 2.093921 TGACCTGAAGACACACGAACAA 60.094 45.455 0.00 0.00 0.00 2.83
145 146 1.478916 TGACCTGAAGACACACGAACA 59.521 47.619 0.00 0.00 0.00 3.18
146 147 2.128035 CTGACCTGAAGACACACGAAC 58.872 52.381 0.00 0.00 0.00 3.95
147 148 2.028876 TCTGACCTGAAGACACACGAA 58.971 47.619 0.00 0.00 0.00 3.85
148 149 1.687563 TCTGACCTGAAGACACACGA 58.312 50.000 0.00 0.00 0.00 4.35
149 150 2.029918 TGATCTGACCTGAAGACACACG 60.030 50.000 0.00 0.00 0.00 4.49
150 151 3.667497 TGATCTGACCTGAAGACACAC 57.333 47.619 0.00 0.00 0.00 3.82
151 152 4.897509 AATGATCTGACCTGAAGACACA 57.102 40.909 0.00 0.00 0.00 3.72
152 153 4.328440 CGAAATGATCTGACCTGAAGACAC 59.672 45.833 0.00 0.00 0.00 3.67
153 154 4.220602 TCGAAATGATCTGACCTGAAGACA 59.779 41.667 0.00 0.00 0.00 3.41
154 155 4.748892 TCGAAATGATCTGACCTGAAGAC 58.251 43.478 0.00 0.00 0.00 3.01
155 156 5.604758 ATCGAAATGATCTGACCTGAAGA 57.395 39.130 0.00 0.00 28.49 2.87
167 168 5.446143 AGAGAAGCGTAGATCGAAATGAT 57.554 39.130 0.00 0.00 42.86 2.45
168 169 4.902443 AGAGAAGCGTAGATCGAAATGA 57.098 40.909 0.00 0.00 42.86 2.57
169 170 5.037385 TGAAGAGAAGCGTAGATCGAAATG 58.963 41.667 0.00 0.00 42.86 2.32
170 171 5.250235 TGAAGAGAAGCGTAGATCGAAAT 57.750 39.130 0.00 0.00 42.86 2.17
171 172 4.696899 TGAAGAGAAGCGTAGATCGAAA 57.303 40.909 0.00 0.00 42.86 3.46
172 173 4.552961 CGATGAAGAGAAGCGTAGATCGAA 60.553 45.833 0.00 0.00 42.86 3.71
173 174 3.059529 CGATGAAGAGAAGCGTAGATCGA 60.060 47.826 0.00 0.00 42.86 3.59
174 175 3.059529 TCGATGAAGAGAAGCGTAGATCG 60.060 47.826 0.00 0.00 43.12 3.69
175 176 4.215965 GTCGATGAAGAGAAGCGTAGATC 58.784 47.826 0.00 0.00 0.00 2.75
176 177 3.303461 CGTCGATGAAGAGAAGCGTAGAT 60.303 47.826 0.00 0.00 0.00 1.98
177 178 2.030579 CGTCGATGAAGAGAAGCGTAGA 59.969 50.000 0.00 0.00 0.00 2.59
178 179 2.030579 TCGTCGATGAAGAGAAGCGTAG 59.969 50.000 4.45 0.00 0.00 3.51
179 180 2.004733 TCGTCGATGAAGAGAAGCGTA 58.995 47.619 4.45 0.00 0.00 4.42
180 181 0.803117 TCGTCGATGAAGAGAAGCGT 59.197 50.000 4.45 0.00 0.00 5.07
181 182 1.184349 GTCGTCGATGAAGAGAAGCG 58.816 55.000 9.35 0.00 0.00 4.68
182 183 1.184349 CGTCGTCGATGAAGAGAAGC 58.816 55.000 14.50 0.00 39.71 3.86
183 184 1.130749 ACCGTCGTCGATGAAGAGAAG 59.869 52.381 20.29 7.42 39.71 2.85
184 185 1.162698 ACCGTCGTCGATGAAGAGAA 58.837 50.000 20.29 0.00 39.71 2.87
185 186 1.135774 CAACCGTCGTCGATGAAGAGA 60.136 52.381 20.29 0.00 39.71 3.10
186 187 1.135774 TCAACCGTCGTCGATGAAGAG 60.136 52.381 20.29 13.03 39.71 2.85
187 188 0.876399 TCAACCGTCGTCGATGAAGA 59.124 50.000 20.29 7.54 39.71 2.87
188 189 1.909376 ATCAACCGTCGTCGATGAAG 58.091 50.000 16.06 11.39 39.71 3.02
189 190 3.703286 ATATCAACCGTCGTCGATGAA 57.297 42.857 16.06 0.00 39.71 2.57
190 191 3.314357 AGAATATCAACCGTCGTCGATGA 59.686 43.478 16.06 2.39 39.71 2.92
191 192 3.422217 CAGAATATCAACCGTCGTCGATG 59.578 47.826 7.51 7.51 39.71 3.84
192 193 3.550233 CCAGAATATCAACCGTCGTCGAT 60.550 47.826 2.98 0.00 39.71 3.59
193 194 2.223409 CCAGAATATCAACCGTCGTCGA 60.223 50.000 2.98 0.00 39.71 4.20
194 195 2.117137 CCAGAATATCAACCGTCGTCG 58.883 52.381 0.00 0.00 0.00 5.12
195 196 2.858344 CACCAGAATATCAACCGTCGTC 59.142 50.000 0.00 0.00 0.00 4.20
196 197 2.232941 ACACCAGAATATCAACCGTCGT 59.767 45.455 0.00 0.00 0.00 4.34
197 198 2.603110 CACACCAGAATATCAACCGTCG 59.397 50.000 0.00 0.00 0.00 5.12
198 199 3.596214 ACACACCAGAATATCAACCGTC 58.404 45.455 0.00 0.00 0.00 4.79
199 200 3.695830 ACACACCAGAATATCAACCGT 57.304 42.857 0.00 0.00 0.00 4.83
200 201 3.126858 CCAACACACCAGAATATCAACCG 59.873 47.826 0.00 0.00 0.00 4.44
201 202 4.079253 ACCAACACACCAGAATATCAACC 58.921 43.478 0.00 0.00 0.00 3.77
202 203 5.003804 AGACCAACACACCAGAATATCAAC 58.996 41.667 0.00 0.00 0.00 3.18
203 204 5.241403 AGACCAACACACCAGAATATCAA 57.759 39.130 0.00 0.00 0.00 2.57
204 205 4.908601 AGACCAACACACCAGAATATCA 57.091 40.909 0.00 0.00 0.00 2.15
205 206 6.823689 ACATAAGACCAACACACCAGAATATC 59.176 38.462 0.00 0.00 0.00 1.63
206 207 6.599244 CACATAAGACCAACACACCAGAATAT 59.401 38.462 0.00 0.00 0.00 1.28
207 208 5.937540 CACATAAGACCAACACACCAGAATA 59.062 40.000 0.00 0.00 0.00 1.75
208 209 4.761739 CACATAAGACCAACACACCAGAAT 59.238 41.667 0.00 0.00 0.00 2.40
209 210 4.133820 CACATAAGACCAACACACCAGAA 58.866 43.478 0.00 0.00 0.00 3.02
210 211 3.495983 CCACATAAGACCAACACACCAGA 60.496 47.826 0.00 0.00 0.00 3.86
211 212 2.813754 CCACATAAGACCAACACACCAG 59.186 50.000 0.00 0.00 0.00 4.00
212 213 2.857483 CCACATAAGACCAACACACCA 58.143 47.619 0.00 0.00 0.00 4.17
213 214 1.539827 GCCACATAAGACCAACACACC 59.460 52.381 0.00 0.00 0.00 4.16
214 215 1.539827 GGCCACATAAGACCAACACAC 59.460 52.381 0.00 0.00 0.00 3.82
215 216 1.423541 AGGCCACATAAGACCAACACA 59.576 47.619 5.01 0.00 0.00 3.72
216 217 1.812571 CAGGCCACATAAGACCAACAC 59.187 52.381 5.01 0.00 0.00 3.32
217 218 1.702401 TCAGGCCACATAAGACCAACA 59.298 47.619 5.01 0.00 0.00 3.33
218 219 2.359900 CTCAGGCCACATAAGACCAAC 58.640 52.381 5.01 0.00 0.00 3.77
219 220 1.340017 GCTCAGGCCACATAAGACCAA 60.340 52.381 5.01 0.00 0.00 3.67
220 221 0.253044 GCTCAGGCCACATAAGACCA 59.747 55.000 5.01 0.00 0.00 4.02
221 222 0.253044 TGCTCAGGCCACATAAGACC 59.747 55.000 5.01 0.00 37.74 3.85
222 223 1.373570 GTGCTCAGGCCACATAAGAC 58.626 55.000 5.01 0.00 37.74 3.01
223 224 0.108186 CGTGCTCAGGCCACATAAGA 60.108 55.000 5.01 0.00 37.74 2.10
224 225 0.108186 TCGTGCTCAGGCCACATAAG 60.108 55.000 5.01 0.00 37.74 1.73
225 226 0.391130 GTCGTGCTCAGGCCACATAA 60.391 55.000 5.01 0.00 37.74 1.90
226 227 1.218047 GTCGTGCTCAGGCCACATA 59.782 57.895 5.01 0.00 37.74 2.29
227 228 2.046892 GTCGTGCTCAGGCCACAT 60.047 61.111 5.01 0.00 37.74 3.21
228 229 4.662961 CGTCGTGCTCAGGCCACA 62.663 66.667 5.01 0.00 37.74 4.17
229 230 3.649277 ATCGTCGTGCTCAGGCCAC 62.649 63.158 5.01 0.00 37.74 5.01
230 231 2.449031 AAATCGTCGTGCTCAGGCCA 62.449 55.000 5.01 0.00 37.74 5.36
231 232 1.298859 AAAATCGTCGTGCTCAGGCC 61.299 55.000 0.00 0.00 37.74 5.19
232 233 0.517316 AAAAATCGTCGTGCTCAGGC 59.483 50.000 0.00 0.00 39.26 4.85
233 234 1.201812 CGAAAAATCGTCGTGCTCAGG 60.202 52.381 0.00 0.00 33.80 3.86
234 235 1.719246 TCGAAAAATCGTCGTGCTCAG 59.281 47.619 0.00 0.00 39.52 3.35
235 236 1.454276 GTCGAAAAATCGTCGTGCTCA 59.546 47.619 0.00 0.00 39.52 4.26
236 237 1.719780 AGTCGAAAAATCGTCGTGCTC 59.280 47.619 0.00 0.00 39.52 4.26
237 238 1.455786 CAGTCGAAAAATCGTCGTGCT 59.544 47.619 0.00 0.00 39.52 4.40
238 239 1.191647 ACAGTCGAAAAATCGTCGTGC 59.808 47.619 0.00 0.00 39.52 5.34
239 240 3.499072 AACAGTCGAAAAATCGTCGTG 57.501 42.857 0.00 0.00 39.52 4.35
240 241 4.741676 AGTAAACAGTCGAAAAATCGTCGT 59.258 37.500 0.00 0.00 39.52 4.34
241 242 5.246677 AGTAAACAGTCGAAAAATCGTCG 57.753 39.130 0.00 0.00 39.88 5.12
256 257 9.661563 CCAGGTCACAACTTATTATAGTAAACA 57.338 33.333 0.00 0.00 0.00 2.83
257 258 8.610035 GCCAGGTCACAACTTATTATAGTAAAC 58.390 37.037 0.00 0.00 0.00 2.01
258 259 8.545472 AGCCAGGTCACAACTTATTATAGTAAA 58.455 33.333 0.00 0.00 0.00 2.01
259 260 8.086143 AGCCAGGTCACAACTTATTATAGTAA 57.914 34.615 0.00 0.00 0.00 2.24
260 261 7.563924 AGAGCCAGGTCACAACTTATTATAGTA 59.436 37.037 0.00 0.00 0.00 1.82
261 262 6.384305 AGAGCCAGGTCACAACTTATTATAGT 59.616 38.462 0.00 0.00 0.00 2.12
262 263 6.703607 CAGAGCCAGGTCACAACTTATTATAG 59.296 42.308 0.00 0.00 0.00 1.31
263 264 6.408092 CCAGAGCCAGGTCACAACTTATTATA 60.408 42.308 0.00 0.00 0.00 0.98
264 265 5.431765 CAGAGCCAGGTCACAACTTATTAT 58.568 41.667 0.00 0.00 0.00 1.28
265 266 4.323485 CCAGAGCCAGGTCACAACTTATTA 60.323 45.833 0.00 0.00 0.00 0.98
266 267 3.560025 CCAGAGCCAGGTCACAACTTATT 60.560 47.826 0.00 0.00 0.00 1.40
267 268 2.026822 CCAGAGCCAGGTCACAACTTAT 60.027 50.000 0.00 0.00 0.00 1.73
268 269 1.347707 CCAGAGCCAGGTCACAACTTA 59.652 52.381 0.00 0.00 0.00 2.24
269 270 0.109342 CCAGAGCCAGGTCACAACTT 59.891 55.000 0.00 0.00 0.00 2.66
270 271 1.056700 ACCAGAGCCAGGTCACAACT 61.057 55.000 0.00 0.00 32.90 3.16
271 272 0.886490 CACCAGAGCCAGGTCACAAC 60.886 60.000 0.00 0.00 37.23 3.32
272 273 1.053835 TCACCAGAGCCAGGTCACAA 61.054 55.000 0.00 0.00 37.23 3.33
273 274 1.459348 TCACCAGAGCCAGGTCACA 60.459 57.895 0.00 0.00 37.23 3.58
274 275 1.294780 CTCACCAGAGCCAGGTCAC 59.705 63.158 0.00 0.00 37.23 3.67
275 276 1.915266 CCTCACCAGAGCCAGGTCA 60.915 63.158 0.00 0.00 40.68 4.02
276 277 2.664081 CCCTCACCAGAGCCAGGTC 61.664 68.421 0.00 0.00 40.68 3.85
277 278 2.608988 CCCTCACCAGAGCCAGGT 60.609 66.667 0.00 0.00 40.68 4.00
278 279 2.284921 TCCCTCACCAGAGCCAGG 60.285 66.667 0.00 0.00 40.68 4.45
279 280 2.365586 CCTCCCTCACCAGAGCCAG 61.366 68.421 0.00 0.00 40.68 4.85
280 281 2.284921 CCTCCCTCACCAGAGCCA 60.285 66.667 0.00 0.00 40.68 4.75
281 282 3.086600 CCCTCCCTCACCAGAGCC 61.087 72.222 0.00 0.00 40.68 4.70
282 283 3.086600 CCCCTCCCTCACCAGAGC 61.087 72.222 0.00 0.00 40.68 4.09
283 284 3.086600 GCCCCTCCCTCACCAGAG 61.087 72.222 0.00 0.00 41.72 3.35
286 287 4.414956 ATCGCCCCTCCCTCACCA 62.415 66.667 0.00 0.00 0.00 4.17
287 288 3.866582 CATCGCCCCTCCCTCACC 61.867 72.222 0.00 0.00 0.00 4.02
288 289 1.910580 TTTCATCGCCCCTCCCTCAC 61.911 60.000 0.00 0.00 0.00 3.51
289 290 1.615124 TTTCATCGCCCCTCCCTCA 60.615 57.895 0.00 0.00 0.00 3.86
290 291 1.147153 CTTTCATCGCCCCTCCCTC 59.853 63.158 0.00 0.00 0.00 4.30
291 292 1.616628 ACTTTCATCGCCCCTCCCT 60.617 57.895 0.00 0.00 0.00 4.20
292 293 1.452108 CACTTTCATCGCCCCTCCC 60.452 63.158 0.00 0.00 0.00 4.30
293 294 1.452108 CCACTTTCATCGCCCCTCC 60.452 63.158 0.00 0.00 0.00 4.30
294 295 2.115291 GCCACTTTCATCGCCCCTC 61.115 63.158 0.00 0.00 0.00 4.30
295 296 2.044946 GCCACTTTCATCGCCCCT 60.045 61.111 0.00 0.00 0.00 4.79
296 297 2.361104 TGCCACTTTCATCGCCCC 60.361 61.111 0.00 0.00 0.00 5.80
297 298 2.877691 GTGCCACTTTCATCGCCC 59.122 61.111 0.00 0.00 0.00 6.13
298 299 2.480555 CGTGCCACTTTCATCGCC 59.519 61.111 0.00 0.00 0.00 5.54
299 300 2.187599 AAGCGTGCCACTTTCATCGC 62.188 55.000 0.00 0.00 43.16 4.58
300 301 0.238289 AAAGCGTGCCACTTTCATCG 59.762 50.000 0.00 0.00 31.82 3.84
304 305 1.082104 CCGAAAGCGTGCCACTTTC 60.082 57.895 11.27 11.27 46.16 2.62
305 306 3.030652 CCGAAAGCGTGCCACTTT 58.969 55.556 0.00 0.00 39.99 2.66
306 307 3.660111 GCCGAAAGCGTGCCACTT 61.660 61.111 0.00 0.00 35.23 3.16
315 316 1.730446 GCACTGAATTGAGCCGAAAGC 60.730 52.381 0.00 0.00 44.25 3.51
316 317 1.808945 AGCACTGAATTGAGCCGAAAG 59.191 47.619 0.00 0.00 0.00 2.62
317 318 1.896220 AGCACTGAATTGAGCCGAAA 58.104 45.000 0.00 0.00 0.00 3.46
318 319 1.536766 CAAGCACTGAATTGAGCCGAA 59.463 47.619 0.00 0.00 0.00 4.30
319 320 1.159285 CAAGCACTGAATTGAGCCGA 58.841 50.000 0.00 0.00 0.00 5.54
320 321 0.877071 ACAAGCACTGAATTGAGCCG 59.123 50.000 0.00 0.00 0.00 5.52
321 322 3.077359 ACTACAAGCACTGAATTGAGCC 58.923 45.455 0.00 0.00 0.00 4.70
322 323 4.023707 ACAACTACAAGCACTGAATTGAGC 60.024 41.667 0.00 0.00 0.00 4.26
323 324 5.679734 ACAACTACAAGCACTGAATTGAG 57.320 39.130 0.00 0.00 0.00 3.02
324 325 5.733091 GCAACAACTACAAGCACTGAATTGA 60.733 40.000 0.00 0.00 0.00 2.57
325 326 4.442073 GCAACAACTACAAGCACTGAATTG 59.558 41.667 0.00 0.00 0.00 2.32
326 327 4.339247 AGCAACAACTACAAGCACTGAATT 59.661 37.500 0.00 0.00 0.00 2.17
327 328 3.885297 AGCAACAACTACAAGCACTGAAT 59.115 39.130 0.00 0.00 0.00 2.57
328 329 3.278574 AGCAACAACTACAAGCACTGAA 58.721 40.909 0.00 0.00 0.00 3.02
329 330 2.917933 AGCAACAACTACAAGCACTGA 58.082 42.857 0.00 0.00 0.00 3.41
330 331 3.809832 ACTAGCAACAACTACAAGCACTG 59.190 43.478 0.00 0.00 0.00 3.66
331 332 4.058817 GACTAGCAACAACTACAAGCACT 58.941 43.478 0.00 0.00 0.00 4.40
332 333 3.120991 CGACTAGCAACAACTACAAGCAC 60.121 47.826 0.00 0.00 0.00 4.40
333 334 3.057019 CGACTAGCAACAACTACAAGCA 58.943 45.455 0.00 0.00 0.00 3.91
334 335 2.412089 CCGACTAGCAACAACTACAAGC 59.588 50.000 0.00 0.00 0.00 4.01
335 336 3.428870 CACCGACTAGCAACAACTACAAG 59.571 47.826 0.00 0.00 0.00 3.16
336 337 3.181473 ACACCGACTAGCAACAACTACAA 60.181 43.478 0.00 0.00 0.00 2.41
337 338 2.363038 ACACCGACTAGCAACAACTACA 59.637 45.455 0.00 0.00 0.00 2.74
338 339 3.022607 ACACCGACTAGCAACAACTAC 57.977 47.619 0.00 0.00 0.00 2.73
339 340 3.365264 CGTACACCGACTAGCAACAACTA 60.365 47.826 0.00 0.00 39.56 2.24
340 341 2.606308 CGTACACCGACTAGCAACAACT 60.606 50.000 0.00 0.00 39.56 3.16
341 342 1.717645 CGTACACCGACTAGCAACAAC 59.282 52.381 0.00 0.00 39.56 3.32
342 343 1.336148 CCGTACACCGACTAGCAACAA 60.336 52.381 0.00 0.00 39.56 2.83
343 344 0.241749 CCGTACACCGACTAGCAACA 59.758 55.000 0.00 0.00 39.56 3.33
344 345 0.523072 TCCGTACACCGACTAGCAAC 59.477 55.000 0.00 0.00 39.56 4.17
345 346 1.402968 GATCCGTACACCGACTAGCAA 59.597 52.381 0.00 0.00 39.56 3.91
346 347 1.019673 GATCCGTACACCGACTAGCA 58.980 55.000 0.00 0.00 39.56 3.49
347 348 1.002684 CAGATCCGTACACCGACTAGC 60.003 57.143 0.00 0.00 39.56 3.42
348 349 2.558378 TCAGATCCGTACACCGACTAG 58.442 52.381 0.00 0.00 39.56 2.57
349 350 2.696989 TCAGATCCGTACACCGACTA 57.303 50.000 0.00 0.00 39.56 2.59
350 351 1.830279 TTCAGATCCGTACACCGACT 58.170 50.000 0.00 0.00 39.56 4.18
351 352 2.460918 CATTCAGATCCGTACACCGAC 58.539 52.381 0.00 0.00 39.56 4.79
352 353 1.202371 GCATTCAGATCCGTACACCGA 60.202 52.381 0.00 0.00 39.56 4.69
353 354 1.209128 GCATTCAGATCCGTACACCG 58.791 55.000 0.00 0.00 0.00 4.94
354 355 2.309528 TGCATTCAGATCCGTACACC 57.690 50.000 0.00 0.00 0.00 4.16
355 356 4.882671 AATTGCATTCAGATCCGTACAC 57.117 40.909 0.00 0.00 0.00 2.90
356 357 5.895636 AAAATTGCATTCAGATCCGTACA 57.104 34.783 0.00 0.00 0.00 2.90
357 358 8.856490 AATAAAAATTGCATTCAGATCCGTAC 57.144 30.769 0.00 0.00 0.00 3.67
376 377 9.186323 CCACAACGAACATCACAAATAATAAAA 57.814 29.630 0.00 0.00 0.00 1.52
377 378 8.353684 ACCACAACGAACATCACAAATAATAAA 58.646 29.630 0.00 0.00 0.00 1.40
378 379 7.805542 CACCACAACGAACATCACAAATAATAA 59.194 33.333 0.00 0.00 0.00 1.40
379 380 7.041030 ACACCACAACGAACATCACAAATAATA 60.041 33.333 0.00 0.00 0.00 0.98
380 381 6.148948 CACCACAACGAACATCACAAATAAT 58.851 36.000 0.00 0.00 0.00 1.28
381 382 5.066634 ACACCACAACGAACATCACAAATAA 59.933 36.000 0.00 0.00 0.00 1.40
382 383 4.576873 ACACCACAACGAACATCACAAATA 59.423 37.500 0.00 0.00 0.00 1.40
383 384 3.380004 ACACCACAACGAACATCACAAAT 59.620 39.130 0.00 0.00 0.00 2.32
384 385 2.750166 ACACCACAACGAACATCACAAA 59.250 40.909 0.00 0.00 0.00 2.83
385 386 2.353269 GACACCACAACGAACATCACAA 59.647 45.455 0.00 0.00 0.00 3.33
386 387 1.937223 GACACCACAACGAACATCACA 59.063 47.619 0.00 0.00 0.00 3.58
387 388 1.937223 TGACACCACAACGAACATCAC 59.063 47.619 0.00 0.00 0.00 3.06
388 389 2.317530 TGACACCACAACGAACATCA 57.682 45.000 0.00 0.00 0.00 3.07
389 390 2.805671 TCATGACACCACAACGAACATC 59.194 45.455 0.00 0.00 0.00 3.06
390 391 2.844946 TCATGACACCACAACGAACAT 58.155 42.857 0.00 0.00 0.00 2.71
391 392 2.317530 TCATGACACCACAACGAACA 57.682 45.000 0.00 0.00 0.00 3.18
392 393 3.249799 TCAATCATGACACCACAACGAAC 59.750 43.478 0.00 0.00 0.00 3.95
393 394 3.471680 TCAATCATGACACCACAACGAA 58.528 40.909 0.00 0.00 0.00 3.85
394 395 3.118905 TCAATCATGACACCACAACGA 57.881 42.857 0.00 0.00 0.00 3.85
395 396 3.498018 TCTTCAATCATGACACCACAACG 59.502 43.478 0.00 0.00 34.61 4.10
396 397 4.275689 TGTCTTCAATCATGACACCACAAC 59.724 41.667 0.00 0.00 34.91 3.32
397 398 4.459330 TGTCTTCAATCATGACACCACAA 58.541 39.130 0.00 0.00 34.91 3.33
398 399 4.084011 TGTCTTCAATCATGACACCACA 57.916 40.909 0.00 0.00 34.91 4.17
399 400 5.437289 TTTGTCTTCAATCATGACACCAC 57.563 39.130 0.00 0.00 38.56 4.16
400 401 7.167535 TCTATTTGTCTTCAATCATGACACCA 58.832 34.615 0.00 0.00 38.56 4.17
401 402 7.615582 TCTATTTGTCTTCAATCATGACACC 57.384 36.000 0.00 0.00 38.56 4.16
444 445 4.236527 ACTCTCCGGCCATTAGATTTTT 57.763 40.909 2.24 0.00 0.00 1.94
445 446 3.933861 ACTCTCCGGCCATTAGATTTT 57.066 42.857 2.24 0.00 0.00 1.82
446 447 6.875972 ATATACTCTCCGGCCATTAGATTT 57.124 37.500 2.24 0.00 0.00 2.17
447 448 6.213600 ACAATATACTCTCCGGCCATTAGATT 59.786 38.462 2.24 0.00 0.00 2.40
448 449 5.721960 ACAATATACTCTCCGGCCATTAGAT 59.278 40.000 2.24 0.00 0.00 1.98
449 450 5.047306 CACAATATACTCTCCGGCCATTAGA 60.047 44.000 2.24 0.45 0.00 2.10
450 451 5.047306 TCACAATATACTCTCCGGCCATTAG 60.047 44.000 2.24 0.00 0.00 1.73
451 452 4.836175 TCACAATATACTCTCCGGCCATTA 59.164 41.667 2.24 0.00 0.00 1.90
452 453 3.646162 TCACAATATACTCTCCGGCCATT 59.354 43.478 2.24 0.00 0.00 3.16
453 454 3.239449 TCACAATATACTCTCCGGCCAT 58.761 45.455 2.24 0.00 0.00 4.40
454 455 2.673258 TCACAATATACTCTCCGGCCA 58.327 47.619 2.24 0.00 0.00 5.36
455 456 3.963428 ATCACAATATACTCTCCGGCC 57.037 47.619 0.00 0.00 0.00 6.13
456 457 7.602644 TCATAAAATCACAATATACTCTCCGGC 59.397 37.037 0.00 0.00 0.00 6.13
457 458 9.489084 TTCATAAAATCACAATATACTCTCCGG 57.511 33.333 0.00 0.00 0.00 5.14
493 494 1.164411 CTACTGGCGCAACAATGGAA 58.836 50.000 10.83 0.00 0.00 3.53
498 499 1.302192 GGGTCTACTGGCGCAACAA 60.302 57.895 10.83 0.00 0.00 2.83
499 500 2.345991 GGGTCTACTGGCGCAACA 59.654 61.111 10.83 0.00 0.00 3.33
501 502 1.534336 TAACGGGTCTACTGGCGCAA 61.534 55.000 10.83 0.00 0.00 4.85
502 503 1.534336 TTAACGGGTCTACTGGCGCA 61.534 55.000 10.83 0.00 0.00 6.09
506 507 2.689983 ACGGTATTAACGGGTCTACTGG 59.310 50.000 6.04 0.00 35.23 4.00
533 534 3.543680 CCAGACCTGGTTATCATCGTT 57.456 47.619 0.00 0.00 45.53 3.85
671 678 0.099436 GATGATTTGCGAGGTGGTGC 59.901 55.000 0.00 0.00 0.00 5.01
672 679 1.667724 GAGATGATTTGCGAGGTGGTG 59.332 52.381 0.00 0.00 0.00 4.17
673 680 1.556911 AGAGATGATTTGCGAGGTGGT 59.443 47.619 0.00 0.00 0.00 4.16
815 822 1.135603 TCGTTTGTGTACGGGAGATCG 60.136 52.381 0.00 0.00 41.67 3.69
826 833 0.812412 CGTGAGGGGTTCGTTTGTGT 60.812 55.000 0.00 0.00 0.00 3.72
845 852 3.403558 GGAGAGTGGGGTCCAGCC 61.404 72.222 0.00 0.00 32.34 4.85
992 1008 3.930229 GGTTTTAATGGGGACGCATTTTC 59.070 43.478 17.81 7.90 32.93 2.29
1084 1102 4.796495 GATTCGGCAGCGGGGGTT 62.796 66.667 0.00 0.00 0.00 4.11
1202 1220 2.446802 AATCGGGAGGAGGGGAGC 60.447 66.667 0.00 0.00 0.00 4.70
1235 1253 2.490902 GGAAAGGAAGGGAGCAAAGGAA 60.491 50.000 0.00 0.00 0.00 3.36
1236 1254 1.075536 GGAAAGGAAGGGAGCAAAGGA 59.924 52.381 0.00 0.00 0.00 3.36
1237 1255 1.550327 GGAAAGGAAGGGAGCAAAGG 58.450 55.000 0.00 0.00 0.00 3.11
1238 1256 1.550327 GGGAAAGGAAGGGAGCAAAG 58.450 55.000 0.00 0.00 0.00 2.77
1308 1326 3.550992 AAGTTATGCGCGCGTCCG 61.551 61.111 31.81 4.57 37.57 4.79
1366 1384 0.599728 GGCGAGCTAGCAGATCCAAG 60.600 60.000 20.82 0.00 39.27 3.61
1453 1471 1.371758 CATCCGCATACGACGAGGG 60.372 63.158 0.00 0.00 43.93 4.30
1456 1474 0.816421 TCCTCATCCGCATACGACGA 60.816 55.000 0.00 0.00 43.93 4.20
1457 1475 0.386100 CTCCTCATCCGCATACGACG 60.386 60.000 0.00 0.00 43.93 5.12
1458 1476 0.039074 CCTCCTCATCCGCATACGAC 60.039 60.000 0.00 0.00 43.93 4.34
1801 1826 0.035439 GGGGGATGCTGAACTCGAAA 60.035 55.000 0.00 0.00 0.00 3.46
1873 1898 3.589654 CTCCGACAGCTCGCCCAAA 62.590 63.158 0.00 0.00 38.70 3.28
1874 1899 4.069232 CTCCGACAGCTCGCCCAA 62.069 66.667 0.00 0.00 38.70 4.12
2077 2111 1.019673 CGCCATCCAGATCAAACCAG 58.980 55.000 0.00 0.00 0.00 4.00
2311 2345 1.321474 CCAGAAGCAAAGCCAACAGA 58.679 50.000 0.00 0.00 0.00 3.41
2332 2366 8.801882 TTTCCCTTTTATATCTGACGAAACAT 57.198 30.769 0.00 0.00 0.00 2.71
2338 2372 8.718102 TCTTCTTTTCCCTTTTATATCTGACG 57.282 34.615 0.00 0.00 0.00 4.35
2386 2420 1.597461 CAAAGTCTCCCCGACCTCC 59.403 63.158 0.00 0.00 43.91 4.30
2487 2521 4.515191 GCAGAACACCAAAGATCAACTACA 59.485 41.667 0.00 0.00 0.00 2.74
2488 2522 4.515191 TGCAGAACACCAAAGATCAACTAC 59.485 41.667 0.00 0.00 0.00 2.73
2497 2531 4.543692 CTGAATTCTGCAGAACACCAAAG 58.456 43.478 30.66 17.41 36.80 2.77
2709 2743 2.030946 GGCGACTATGAACATCAACAGC 59.969 50.000 0.00 0.00 0.00 4.40
3084 3119 7.072263 AGAAATGAGAACCTTTCTGAGAAGA 57.928 36.000 0.00 0.00 40.87 2.87
3110 3145 5.338381 GGTTGGATCATCAAGAAGGTACAGA 60.338 44.000 0.00 0.00 0.00 3.41
3146 3181 4.161333 GCACACAGACTGCATGTTAATTC 58.839 43.478 1.25 0.00 34.56 2.17
3170 3216 5.541868 TCAGAAGACAGAGGAAAGTTCTCAT 59.458 40.000 0.00 0.00 33.92 2.90
3200 3246 5.543714 TCAGGTACAACTAGAAATGCGAAA 58.456 37.500 0.00 0.00 0.00 3.46
3261 3307 7.486802 AGACAAAGGAAAATTTTCATTGCAG 57.513 32.000 29.58 23.55 39.90 4.41
3481 3528 8.226819 TGTTTGATCACACTTACACCAATTAA 57.773 30.769 12.95 0.00 0.00 1.40
3571 3619 6.432783 CAGACTGACCCAAAATTATACCAACA 59.567 38.462 0.00 0.00 0.00 3.33
3616 3664 8.062065 TGCTGGAAAAATAATACCCTAAAGTG 57.938 34.615 0.00 0.00 0.00 3.16
3666 3714 1.298157 CTTGCTTTCGCCGTCCATCA 61.298 55.000 0.00 0.00 34.43 3.07
3748 3797 4.446371 CCAGCCTAAGTAAAGGTGATGAG 58.554 47.826 0.00 0.00 39.02 2.90
3762 3811 1.619363 AGACCCATGGCCAGCCTAA 60.619 57.895 13.05 0.00 36.94 2.69
3771 3820 0.987294 AACAGAGGACAGACCCATGG 59.013 55.000 4.14 4.14 40.05 3.66
3777 3826 1.000163 TGCGAGAAACAGAGGACAGAC 60.000 52.381 0.00 0.00 0.00 3.51
3778 3827 1.000163 GTGCGAGAAACAGAGGACAGA 60.000 52.381 0.00 0.00 0.00 3.41
3808 3857 5.627780 GTGCCTTTGTTAAATTACCTTGTCG 59.372 40.000 0.00 0.00 0.00 4.35
3955 4004 3.676646 GCAAAGAACAATGCTGCCTAAAG 59.323 43.478 0.00 0.00 39.46 1.85
4053 4102 5.859495 AGCCTCCTAGTGCTTATTTGATAC 58.141 41.667 0.00 0.00 32.94 2.24
4086 4135 3.818961 AACATGATCAGCAAAGTGACG 57.181 42.857 0.00 0.00 0.00 4.35
4197 4251 3.623863 TCGTCTGGAAAATTTTCAACGC 58.376 40.909 28.92 17.12 38.18 4.84
4198 4252 5.090652 TCTCGTCTGGAAAATTTTCAACG 57.909 39.130 28.39 28.39 38.92 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.