Multiple sequence alignment - TraesCS4A01G192700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G192700 chr4A 100.000 5210 0 0 1 5210 473685557 473690766 0.000000e+00 9622.0
1 TraesCS4A01G192700 chr4A 76.897 290 64 3 502 789 19526825 19526537 1.500000e-35 161.0
2 TraesCS4A01G192700 chr4B 93.599 2734 111 28 816 3511 145806948 145804241 0.000000e+00 4021.0
3 TraesCS4A01G192700 chr4B 92.571 1346 61 7 3734 5058 145804006 145802679 0.000000e+00 1895.0
4 TraesCS4A01G192700 chr4B 83.211 816 112 17 1 808 145808038 145807240 0.000000e+00 725.0
5 TraesCS4A01G192700 chr4B 76.207 290 64 5 503 789 42140887 42141174 1.170000e-31 148.0
6 TraesCS4A01G192700 chr4B 91.139 79 3 2 5134 5210 145797824 145797748 2.570000e-18 104.0
7 TraesCS4A01G192700 chr4D 93.756 2242 84 20 811 3025 101657393 101655181 0.000000e+00 3314.0
8 TraesCS4A01G192700 chr4D 96.193 893 34 0 3734 4626 101653079 101652187 0.000000e+00 1461.0
9 TraesCS4A01G192700 chr4D 91.404 826 70 1 1 825 101660157 101659332 0.000000e+00 1131.0
10 TraesCS4A01G192700 chr4D 94.963 536 18 4 3042 3570 101653834 101653301 0.000000e+00 832.0
11 TraesCS4A01G192700 chr4D 88.256 562 44 11 4652 5210 101651980 101651438 0.000000e+00 652.0
12 TraesCS4A01G192700 chr2B 78.832 274 54 4 518 789 648360019 648359748 1.150000e-41 182.0
13 TraesCS4A01G192700 chr7B 76.792 293 65 3 499 789 740172956 740173247 1.500000e-35 161.0
14 TraesCS4A01G192700 chr7A 76.897 290 64 3 502 789 85340018 85339730 1.500000e-35 161.0
15 TraesCS4A01G192700 chr3A 76.547 307 65 4 502 802 171250157 171249852 1.500000e-35 161.0
16 TraesCS4A01G192700 chr1A 76.552 290 65 3 502 789 29198208 29197920 6.990000e-34 156.0
17 TraesCS4A01G192700 chr2A 91.045 67 5 1 1509 1574 735351754 735351688 7.190000e-14 89.8
18 TraesCS4A01G192700 chr5A 88.235 68 5 3 2781 2845 590615003 590614936 1.560000e-10 78.7
19 TraesCS4A01G192700 chr5D 88.060 67 5 3 1501 1566 539870402 539870466 5.590000e-10 76.8
20 TraesCS4A01G192700 chr5B 88.889 63 3 4 1510 1570 36557883 36557943 2.010000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G192700 chr4A 473685557 473690766 5209 False 9622.000000 9622 100.000000 1 5210 1 chr4A.!!$F1 5209
1 TraesCS4A01G192700 chr4B 145802679 145808038 5359 True 2213.666667 4021 89.793667 1 5058 3 chr4B.!!$R2 5057
2 TraesCS4A01G192700 chr4D 101651438 101660157 8719 True 1478.000000 3314 92.914400 1 5210 5 chr4D.!!$R1 5209

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
178 179 0.602638 GGCAGTCACACAATCGGTCA 60.603 55.0 0.0 0.0 0.00 4.02 F
1238 3233 0.614979 ACTACAGATGTGCCCTCCGT 60.615 55.0 0.0 0.0 0.00 4.69 F
1283 3286 0.730840 ACGATGTGCGATAGTCACGA 59.269 50.0 0.0 0.0 44.57 4.35 F
2099 4107 0.106149 AACAGAAAGGAGCGAACCGT 59.894 50.0 0.0 0.0 34.73 4.83 F
4071 7522 0.106894 CCCAGGAAGAAGTATCGCCC 59.893 60.0 0.0 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2080 4088 0.106149 ACGGTTCGCTCCTTTCTGTT 59.894 50.0 0.00 0.00 0.00 3.16 R
2099 4107 0.178921 AGTGCCTCTGACCTCTTCCA 60.179 55.0 0.00 0.00 0.00 3.53 R
2927 4953 1.177401 GTTGAGGGCCACTTTGGATC 58.823 55.0 6.18 0.00 40.96 3.36 R
4080 7531 0.034616 GGATCGGAGAATCTGGCCTG 59.965 60.0 3.32 2.92 43.33 4.85 R
5045 8679 1.511850 GCCACCATTCCTTTTTGTGC 58.488 50.0 0.00 0.00 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 3.582780 GTTTGGTATTCGTCTTCCTCGT 58.417 45.455 0.00 0.00 0.00 4.18
163 164 3.400255 CATCATGTGGACTATCTGGCAG 58.600 50.000 8.58 8.58 0.00 4.85
178 179 0.602638 GGCAGTCACACAATCGGTCA 60.603 55.000 0.00 0.00 0.00 4.02
193 194 3.399330 TCGGTCAAAACATGAAGGAGAC 58.601 45.455 0.00 0.67 40.50 3.36
199 200 0.693049 AACATGAAGGAGACGGGCTT 59.307 50.000 0.00 0.00 0.00 4.35
287 288 1.134037 TCCTGTTTTGCCTGGTTACGT 60.134 47.619 0.00 0.00 0.00 3.57
324 325 3.116300 GCACGACGTCATCAATATCACT 58.884 45.455 17.16 0.00 0.00 3.41
336 337 5.147330 TCAATATCACTACTTATGGGCGG 57.853 43.478 0.00 0.00 0.00 6.13
340 341 1.754803 TCACTACTTATGGGCGGTGAG 59.245 52.381 0.00 0.00 31.43 3.51
343 344 3.131577 CACTACTTATGGGCGGTGAGTTA 59.868 47.826 0.00 0.00 0.00 2.24
345 346 3.194005 ACTTATGGGCGGTGAGTTATG 57.806 47.619 0.00 0.00 0.00 1.90
388 389 1.541379 GGGGTTGCACGTTTATCCTT 58.459 50.000 0.00 0.00 0.00 3.36
447 449 2.582052 TCTTTGACCCGTTGATTGCTT 58.418 42.857 0.00 0.00 0.00 3.91
448 450 2.955660 TCTTTGACCCGTTGATTGCTTT 59.044 40.909 0.00 0.00 0.00 3.51
489 495 2.260869 GGTTTGCCAAGCTGCGAGA 61.261 57.895 0.00 0.00 34.09 4.04
500 506 4.035558 CCAAGCTGCGAGAATTTAAGCATA 59.964 41.667 0.00 0.00 39.02 3.14
516 522 7.759489 TTAAGCATAGAGGTTGATTGTTTGT 57.241 32.000 0.00 0.00 38.62 2.83
530 536 8.349983 GTTGATTGTTTGTAGATGGTTACACTT 58.650 33.333 0.00 0.00 33.50 3.16
532 538 8.349245 TGATTGTTTGTAGATGGTTACACTTTG 58.651 33.333 0.00 0.00 33.50 2.77
533 539 6.627395 TGTTTGTAGATGGTTACACTTTGG 57.373 37.500 0.00 0.00 33.50 3.28
542 548 3.200483 GGTTACACTTTGGAACACTCGT 58.800 45.455 3.74 0.00 42.93 4.18
545 551 3.194005 ACACTTTGGAACACTCGTCAT 57.806 42.857 0.00 0.00 39.29 3.06
597 603 8.157476 TCTTAGTTGAAATTGGAGAGTTAGCTT 58.843 33.333 0.00 0.00 0.00 3.74
600 606 6.205658 AGTTGAAATTGGAGAGTTAGCTTGTC 59.794 38.462 0.00 0.00 0.00 3.18
682 689 1.673400 TCAAAGCGTGCTTGCACTTTA 59.327 42.857 21.17 1.05 36.26 1.85
692 699 3.382865 TGCTTGCACTTTAAATGTGACCA 59.617 39.130 16.88 7.51 37.60 4.02
697 704 7.475771 TTGCACTTTAAATGTGACCAAAATC 57.524 32.000 16.88 3.22 37.60 2.17
700 707 6.701400 GCACTTTAAATGTGACCAAAATCTGT 59.299 34.615 16.88 0.00 37.60 3.41
703 710 8.352942 ACTTTAAATGTGACCAAAATCTGTCTC 58.647 33.333 0.00 0.00 32.67 3.36
708 715 3.372206 GTGACCAAAATCTGTCTCGATGG 59.628 47.826 0.00 0.00 32.67 3.51
718 725 4.844884 TCTGTCTCGATGGAACTTCTAGA 58.155 43.478 0.00 0.00 0.00 2.43
736 743 2.810164 AGAGTCCTAGTGACCAACCTC 58.190 52.381 7.50 0.00 45.68 3.85
760 767 4.780815 TGGTTGATTATCCGAAGAATGCT 58.219 39.130 0.00 0.00 0.00 3.79
1080 3064 2.045536 CAGGCAAGCACCCTCTCC 60.046 66.667 0.00 0.00 0.00 3.71
1106 3093 2.284405 TCCCCCACCCGTCTTCTC 60.284 66.667 0.00 0.00 0.00 2.87
1108 3095 2.660064 CCCCCACCCGTCTTCTCTG 61.660 68.421 0.00 0.00 0.00 3.35
1132 3119 5.564550 CCATCCAATCCCTCTGGTTATTAG 58.435 45.833 0.00 0.00 35.30 1.73
1134 3121 6.272324 CCATCCAATCCCTCTGGTTATTAGTA 59.728 42.308 0.00 0.00 35.30 1.82
1135 3122 7.202186 CCATCCAATCCCTCTGGTTATTAGTAA 60.202 40.741 0.00 0.00 35.30 2.24
1136 3123 7.947782 TCCAATCCCTCTGGTTATTAGTAAT 57.052 36.000 0.17 0.17 35.30 1.89
1137 3124 7.974504 TCCAATCCCTCTGGTTATTAGTAATC 58.025 38.462 0.00 0.00 35.30 1.75
1138 3125 7.570982 TCCAATCCCTCTGGTTATTAGTAATCA 59.429 37.037 0.00 0.00 35.30 2.57
1139 3126 7.661847 CCAATCCCTCTGGTTATTAGTAATCAC 59.338 40.741 0.00 0.00 28.32 3.06
1140 3127 8.432805 CAATCCCTCTGGTTATTAGTAATCACT 58.567 37.037 0.00 0.00 38.91 3.41
1141 3128 7.361457 TCCCTCTGGTTATTAGTAATCACTG 57.639 40.000 0.00 0.00 36.14 3.66
1142 3129 5.992217 CCCTCTGGTTATTAGTAATCACTGC 59.008 44.000 0.00 0.00 36.14 4.40
1143 3130 6.183361 CCCTCTGGTTATTAGTAATCACTGCT 60.183 42.308 0.00 0.00 36.14 4.24
1144 3131 6.703607 CCTCTGGTTATTAGTAATCACTGCTG 59.296 42.308 0.00 0.00 36.14 4.41
1196 3191 4.201851 CCGTCGGTCGAATATTATATCGGT 60.202 45.833 2.08 0.00 42.86 4.69
1238 3233 0.614979 ACTACAGATGTGCCCTCCGT 60.615 55.000 0.00 0.00 0.00 4.69
1283 3286 0.730840 ACGATGTGCGATAGTCACGA 59.269 50.000 0.00 0.00 44.57 4.35
1316 3319 4.882427 GGTTTTCCCTCTTGCTTACCTATC 59.118 45.833 0.00 0.00 0.00 2.08
1321 3324 2.040178 CTCTTGCTTACCTATCGGGGT 58.960 52.381 0.00 0.00 42.86 4.95
1409 3413 5.684704 TCCAAACCCATCACTGAGATAATC 58.315 41.667 0.00 0.00 34.43 1.75
1436 3440 3.194542 AGCTGTAGTGTTCCTCTGATGTC 59.805 47.826 0.00 0.00 0.00 3.06
1571 3575 5.006358 AGTGTAAAATCGTTTGCTATAGCGG 59.994 40.000 19.55 9.05 45.83 5.52
1594 3598 6.918022 CGGATTTTAAGGGATGTGCTATTTTC 59.082 38.462 0.00 0.00 0.00 2.29
1595 3599 7.210174 GGATTTTAAGGGATGTGCTATTTTCC 58.790 38.462 0.00 0.00 0.00 3.13
1608 3612 2.418368 ATTTTCCCATAGCACGCTCA 57.582 45.000 0.00 0.00 0.00 4.26
1609 3613 2.418368 TTTTCCCATAGCACGCTCAT 57.582 45.000 0.00 0.00 0.00 2.90
1614 3618 3.879998 TCCCATAGCACGCTCATTTTTA 58.120 40.909 0.00 0.00 0.00 1.52
1921 3928 4.962362 TCAGGTGAGACAGCAAATATAGGA 59.038 41.667 0.00 0.00 33.95 2.94
1961 3968 6.567687 ACATTGGTGAAACACGATGAAATA 57.432 33.333 17.12 0.00 39.98 1.40
2080 4088 2.362397 GTCATTCGACAGCTATGGAGGA 59.638 50.000 0.00 0.00 42.13 3.71
2099 4107 0.106149 AACAGAAAGGAGCGAACCGT 59.894 50.000 0.00 0.00 34.73 4.83
2174 4182 2.552743 AGAAACGCCTTGGAAGTAAAGC 59.447 45.455 0.00 0.00 0.00 3.51
2247 4262 4.569162 TCGTAATTGTAGCTTCATTTCGGG 59.431 41.667 4.06 0.00 0.00 5.14
2264 4280 1.119684 GGGCCCTTTTTGTGTTGTCT 58.880 50.000 17.04 0.00 0.00 3.41
2272 4288 4.827284 CCTTTTTGTGTTGTCTCTGGGTAT 59.173 41.667 0.00 0.00 0.00 2.73
2367 4383 8.451748 GTTTTACAGGAAGGTCTCATTATTGTC 58.548 37.037 0.00 0.00 0.00 3.18
2671 4688 1.770324 CCCAGTTCAGGGCCTCTTT 59.230 57.895 0.95 0.00 43.10 2.52
2672 4689 0.991920 CCCAGTTCAGGGCCTCTTTA 59.008 55.000 0.95 0.00 43.10 1.85
2776 4793 2.947652 CCCAGTCCTATGCAAATGAGTG 59.052 50.000 0.00 0.22 0.00 3.51
2813 4830 8.956426 GTTGAAGTGGATGTTGAAATTCCTATA 58.044 33.333 0.00 0.00 0.00 1.31
2855 4876 5.385509 TCCATATGAATTCGATAGCGTCA 57.614 39.130 3.65 0.00 38.98 4.35
2883 4904 1.282157 GACCCAAATGGCCTCTGTAGT 59.718 52.381 3.32 0.00 37.83 2.73
2884 4905 1.710809 ACCCAAATGGCCTCTGTAGTT 59.289 47.619 3.32 0.00 37.83 2.24
2885 4906 2.290960 ACCCAAATGGCCTCTGTAGTTC 60.291 50.000 3.32 0.00 37.83 3.01
2886 4907 2.369394 CCAAATGGCCTCTGTAGTTCC 58.631 52.381 3.32 0.00 0.00 3.62
2887 4908 2.025887 CCAAATGGCCTCTGTAGTTCCT 60.026 50.000 3.32 0.00 0.00 3.36
2888 4909 3.012518 CAAATGGCCTCTGTAGTTCCTG 58.987 50.000 3.32 0.00 0.00 3.86
2889 4910 2.254152 ATGGCCTCTGTAGTTCCTGA 57.746 50.000 3.32 0.00 0.00 3.86
2904 4929 6.581388 AGTTCCTGAAGGATTGGAATCATA 57.419 37.500 0.00 0.00 44.98 2.15
2910 4935 7.840716 TCCTGAAGGATTGGAATCATACAAAAT 59.159 33.333 0.00 0.00 39.78 1.82
2911 4936 8.480501 CCTGAAGGATTGGAATCATACAAAATT 58.519 33.333 1.94 0.00 37.15 1.82
2949 4975 1.063266 TCCAAAGTGGCCCTCAACTTT 60.063 47.619 12.02 12.02 37.47 2.66
3034 6304 8.355913 TCTCTGTAGCACTAGATGAAACATATG 58.644 37.037 0.00 0.00 0.00 1.78
3117 6472 8.338072 TGTTCAAGTTTCCTTTTACTGTGTTA 57.662 30.769 0.00 0.00 0.00 2.41
3245 6607 1.205460 TGGTGCTTCCTCTTACCCCC 61.205 60.000 0.00 0.00 37.07 5.40
3271 6633 5.852282 AAACTGTTTCAGGTTGCTAATGT 57.148 34.783 0.00 0.00 40.17 2.71
3314 6676 7.838771 ACTTGTACTTCGTGAACTAAAAACT 57.161 32.000 0.00 0.00 0.00 2.66
3385 6747 3.354089 AGAGAACAAAATGTTGCGTGG 57.646 42.857 0.00 0.00 41.28 4.94
3526 6888 7.448469 ACTGCACAGTTCTTAATTTTATCCACT 59.552 33.333 0.00 0.00 38.83 4.00
3544 6906 2.543848 CACTCACTGCACGTGTAAACAT 59.456 45.455 18.38 0.00 44.16 2.71
3546 6908 2.139917 TCACTGCACGTGTAAACATCC 58.860 47.619 18.38 0.00 44.16 3.51
3578 7027 7.226128 GGGTGGAACTGCTATATAGTTTTGTAC 59.774 40.741 11.38 3.82 38.42 2.90
3582 7031 9.991906 GGAACTGCTATATAGTTTTGTACCATA 57.008 33.333 11.38 0.00 38.42 2.74
3605 7054 9.186323 CATACATTGCTCAGTAATCAGTAGTAC 57.814 37.037 0.00 0.00 0.00 2.73
3637 7086 8.076178 TGCTTTCTGTTACTATTTGCTTTCTTC 58.924 33.333 0.00 0.00 0.00 2.87
3654 7103 6.515272 TTTCTTCCAGCAATTCTATGAACC 57.485 37.500 0.00 0.00 0.00 3.62
3670 7121 4.314740 TGAACCCAGTACATTTTGTTGC 57.685 40.909 0.00 0.00 0.00 4.17
3696 7147 6.258947 GGTTCAGATGAAAGTTGGCTATAGTC 59.741 42.308 0.00 0.00 35.58 2.59
3703 7154 9.384764 GATGAAAGTTGGCTATAGTCTTAGTTT 57.615 33.333 5.83 8.80 0.00 2.66
3720 7171 9.569167 GTCTTAGTTTAAAAGATAACCAATGGC 57.431 33.333 0.00 0.00 35.53 4.40
3721 7172 9.528489 TCTTAGTTTAAAAGATAACCAATGGCT 57.472 29.630 0.00 0.00 0.00 4.75
3724 7175 8.189119 AGTTTAAAAGATAACCAATGGCTTCA 57.811 30.769 0.00 0.00 0.00 3.02
3725 7176 8.646900 AGTTTAAAAGATAACCAATGGCTTCAA 58.353 29.630 0.00 0.00 0.00 2.69
3726 7177 9.267084 GTTTAAAAGATAACCAATGGCTTCAAA 57.733 29.630 0.00 0.00 0.00 2.69
3727 7178 9.838339 TTTAAAAGATAACCAATGGCTTCAAAA 57.162 25.926 0.00 0.00 0.00 2.44
3728 7179 9.838339 TTAAAAGATAACCAATGGCTTCAAAAA 57.162 25.926 0.00 0.00 0.00 1.94
3771 7222 6.122277 TGGGTGATTGGAACTTCTATTGATC 58.878 40.000 0.00 0.00 0.00 2.92
3796 7247 2.777832 AGCTAGCCCTCTCAAAGTTG 57.222 50.000 12.13 0.00 0.00 3.16
3811 7262 9.092876 CTCTCAAAGTTGTACTGAAATAGATCC 57.907 37.037 0.00 0.00 0.00 3.36
3818 7269 8.816894 AGTTGTACTGAAATAGATCCTCTTGAA 58.183 33.333 0.00 0.00 0.00 2.69
3849 7300 3.181503 GCATGCAACTGGAGACATTACTG 60.182 47.826 14.21 0.00 41.51 2.74
3949 7400 1.743623 CAGTTCGCCGCCCACAATA 60.744 57.895 0.00 0.00 0.00 1.90
3962 7413 3.206150 CCCACAATATCGTCTCCTTTGG 58.794 50.000 0.00 0.00 0.00 3.28
3963 7414 2.614057 CCACAATATCGTCTCCTTTGGC 59.386 50.000 0.00 0.00 0.00 4.52
4044 7495 0.106918 TGTTTCCGGTGGTTGAAGCT 60.107 50.000 0.00 0.00 0.00 3.74
4068 7519 4.402056 TTTAGCCCAGGAAGAAGTATCG 57.598 45.455 0.00 0.00 0.00 2.92
4071 7522 0.106894 CCCAGGAAGAAGTATCGCCC 59.893 60.000 0.00 0.00 0.00 6.13
4080 7531 3.613689 GTATCGCCCGTCCCCTCC 61.614 72.222 0.00 0.00 0.00 4.30
4161 7612 9.790344 ATTTCTGTAGATAATGCTGCTAATTCT 57.210 29.630 0.00 1.40 0.00 2.40
4236 7687 1.634702 CGGCTTCTACTCTGCTTGTC 58.365 55.000 0.00 0.00 0.00 3.18
4347 7798 2.389713 CAGGTTTCTGCTTTCGTGTG 57.610 50.000 0.00 0.00 33.86 3.82
4374 7825 4.323553 AAGAGTATACGGGCTGACATTC 57.676 45.455 0.00 0.00 0.00 2.67
4406 7857 3.290948 TGGTGAAGTTGGCTAGTGTTT 57.709 42.857 0.00 0.00 0.00 2.83
4408 7859 4.980573 TGGTGAAGTTGGCTAGTGTTTAT 58.019 39.130 0.00 0.00 0.00 1.40
4432 7883 6.941857 TCTGTTCATGTATAGGCAAAGTGTA 58.058 36.000 0.00 0.00 0.00 2.90
4472 7923 3.410631 TCGGTTTTCATGCTTGTAGGA 57.589 42.857 0.00 0.00 0.00 2.94
4551 8002 5.787953 ACTGAGACTGATACATGGAGATG 57.212 43.478 0.00 0.00 35.49 2.90
4642 8254 8.594881 ATTTTACTAGATAATTGACTCTGCCG 57.405 34.615 0.00 0.00 0.00 5.69
4643 8255 4.592485 ACTAGATAATTGACTCTGCCGG 57.408 45.455 0.00 0.00 0.00 6.13
4647 8259 3.904339 AGATAATTGACTCTGCCGGGTAT 59.096 43.478 2.18 0.00 0.00 2.73
4648 8260 5.084519 AGATAATTGACTCTGCCGGGTATA 58.915 41.667 2.18 0.00 0.00 1.47
4650 8262 4.497291 AATTGACTCTGCCGGGTATAAA 57.503 40.909 2.18 0.00 0.00 1.40
4651 8263 4.706842 ATTGACTCTGCCGGGTATAAAT 57.293 40.909 2.18 0.00 0.00 1.40
4652 8264 5.818678 ATTGACTCTGCCGGGTATAAATA 57.181 39.130 2.18 0.00 0.00 1.40
4737 8370 6.619801 AGAATTTGTCAGTGTACCAAAGAC 57.380 37.500 9.83 0.00 32.17 3.01
4846 8479 8.348285 AGATGAAAGGAAATAATCAAAACGGA 57.652 30.769 0.00 0.00 0.00 4.69
4879 8512 9.737427 GAGACGAGAACATATCTAAGATTGAAA 57.263 33.333 0.00 0.00 38.96 2.69
4898 8531 6.618287 TGAAAGAATGACAAACTGAACGAT 57.382 33.333 0.00 0.00 0.00 3.73
4905 8538 5.029650 TGACAAACTGAACGATGTAATGC 57.970 39.130 0.00 0.00 0.00 3.56
4962 8596 4.441495 CCAACAAAAGTCCCTTCAACTTCC 60.441 45.833 0.00 0.00 35.96 3.46
4966 8600 1.718280 AGTCCCTTCAACTTCCGTCT 58.282 50.000 0.00 0.00 0.00 4.18
5003 8637 9.450807 CTCACGAAAACATTCTTTTCTTATTGT 57.549 29.630 0.00 0.00 36.54 2.71
5071 8705 2.143876 AAGGAATGGTGGCCATGTAC 57.856 50.000 9.72 0.00 44.40 2.90
5082 8716 4.036734 GGTGGCCATGTACAGTTTATGATG 59.963 45.833 9.72 0.00 0.00 3.07
5085 8719 4.644685 GGCCATGTACAGTTTATGATGGTT 59.355 41.667 0.33 0.00 34.65 3.67
5086 8720 5.127031 GGCCATGTACAGTTTATGATGGTTT 59.873 40.000 0.33 0.00 34.65 3.27
5096 8730 5.046159 AGTTTATGATGGTTTCCACGGTCTA 60.046 40.000 0.00 0.00 35.80 2.59
5104 8738 3.181500 GGTTTCCACGGTCTATTTGCATC 60.181 47.826 0.00 0.00 0.00 3.91
5125 8759 6.517605 CATCAATCAATGCATACAATTCCCA 58.482 36.000 0.00 0.00 0.00 4.37
5126 8760 6.734502 TCAATCAATGCATACAATTCCCAT 57.265 33.333 0.00 0.00 0.00 4.00
5127 8761 7.836479 TCAATCAATGCATACAATTCCCATA 57.164 32.000 0.00 0.00 0.00 2.74
5128 8762 8.247666 TCAATCAATGCATACAATTCCCATAA 57.752 30.769 0.00 0.00 0.00 1.90
5129 8763 8.702819 TCAATCAATGCATACAATTCCCATAAA 58.297 29.630 0.00 0.00 0.00 1.40
5130 8764 9.327628 CAATCAATGCATACAATTCCCATAAAA 57.672 29.630 0.00 0.00 0.00 1.52
5131 8765 9.902684 AATCAATGCATACAATTCCCATAAAAA 57.097 25.926 0.00 0.00 0.00 1.94
5154 8788 3.401033 TTGATGCATACAGTATCCCCG 57.599 47.619 0.00 0.00 38.44 5.73
5157 8791 1.051556 TGCATACAGTATCCCCGCCA 61.052 55.000 0.00 0.00 0.00 5.69
5192 8826 8.023128 GCATACATTCACAGTGAACTTTGTTAT 58.977 33.333 20.84 12.22 39.45 1.89
5199 8833 7.639039 TCACAGTGAACTTTGTTATGATTGTC 58.361 34.615 0.00 0.00 0.00 3.18
5200 8834 6.574832 CACAGTGAACTTTGTTATGATTGTCG 59.425 38.462 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 2.530460 CCCATGAATGAGGGTGGAAA 57.470 50.000 0.00 0.00 40.34 3.13
119 120 2.168313 TGAGGATATTCACGCAGCTTGA 59.832 45.455 0.00 0.00 0.00 3.02
121 122 2.555199 GTGAGGATATTCACGCAGCTT 58.445 47.619 0.00 0.00 38.23 3.74
122 123 1.202580 GGTGAGGATATTCACGCAGCT 60.203 52.381 2.26 0.00 46.61 4.24
160 161 1.225855 TTGACCGATTGTGTGACTGC 58.774 50.000 0.00 0.00 0.00 4.40
163 164 3.684103 TGTTTTGACCGATTGTGTGAC 57.316 42.857 0.00 0.00 0.00 3.67
178 179 1.073923 AGCCCGTCTCCTTCATGTTTT 59.926 47.619 0.00 0.00 0.00 2.43
193 194 1.384222 GGGTTTGCAGGATAAGCCCG 61.384 60.000 5.90 0.00 38.53 6.13
199 200 0.751277 CGCATGGGGTTTGCAGGATA 60.751 55.000 0.89 0.00 40.14 2.59
246 247 2.020942 AGGGGGCTTCCTAGGTAATTCT 60.021 50.000 9.08 0.00 34.92 2.40
287 288 1.916273 TGCCCCAAAGGTCGCTAGA 60.916 57.895 0.00 0.00 38.26 2.43
324 325 3.493699 GCATAACTCACCGCCCATAAGTA 60.494 47.826 0.00 0.00 0.00 2.24
336 337 3.357021 CATGATTGTGCGCATAACTCAC 58.643 45.455 22.30 13.50 34.46 3.51
340 341 2.097304 TCACCATGATTGTGCGCATAAC 59.903 45.455 22.30 15.46 33.71 1.89
343 344 0.452987 GTCACCATGATTGTGCGCAT 59.547 50.000 15.91 0.00 33.71 4.73
345 346 1.226101 CGTCACCATGATTGTGCGC 60.226 57.895 0.00 0.00 33.71 6.09
388 389 1.064017 ACCCAACACCAAGAAGAGCAA 60.064 47.619 0.00 0.00 0.00 3.91
447 449 3.362706 ACACTGTCCGAGAATAGGCTAA 58.637 45.455 0.00 0.00 0.00 3.09
448 450 2.950309 GACACTGTCCGAGAATAGGCTA 59.050 50.000 0.00 0.00 0.00 3.93
489 495 9.643693 CAAACAATCAACCTCTATGCTTAAATT 57.356 29.630 0.00 0.00 0.00 1.82
500 506 5.880901 ACCATCTACAAACAATCAACCTCT 58.119 37.500 0.00 0.00 0.00 3.69
516 522 6.182507 AGTGTTCCAAAGTGTAACCATCTA 57.817 37.500 0.00 0.00 37.80 1.98
530 536 4.862574 CGAGAATTATGACGAGTGTTCCAA 59.137 41.667 0.00 0.00 0.00 3.53
532 538 4.421948 ACGAGAATTATGACGAGTGTTCC 58.578 43.478 0.00 0.00 0.00 3.62
533 539 5.571741 TGAACGAGAATTATGACGAGTGTTC 59.428 40.000 0.00 0.00 34.23 3.18
542 548 5.647658 AGCCACAATTGAACGAGAATTATGA 59.352 36.000 13.59 0.00 0.00 2.15
545 551 4.394920 GGAGCCACAATTGAACGAGAATTA 59.605 41.667 13.59 0.00 0.00 1.40
682 689 5.063204 TCGAGACAGATTTTGGTCACATTT 58.937 37.500 0.00 0.00 36.50 2.32
692 699 5.799213 AGAAGTTCCATCGAGACAGATTTT 58.201 37.500 0.00 0.00 0.00 1.82
697 704 4.638421 ACTCTAGAAGTTCCATCGAGACAG 59.362 45.833 12.47 0.00 33.03 3.51
700 707 4.080243 AGGACTCTAGAAGTTCCATCGAGA 60.080 45.833 14.32 3.40 38.74 4.04
703 710 5.008217 CACTAGGACTCTAGAAGTTCCATCG 59.992 48.000 14.32 6.81 44.35 3.84
708 715 5.254901 TGGTCACTAGGACTCTAGAAGTTC 58.745 45.833 7.35 0.00 46.16 3.01
718 725 1.433592 AGGAGGTTGGTCACTAGGACT 59.566 52.381 10.11 0.00 46.16 3.85
736 743 4.023707 GCATTCTTCGGATAATCAACCAGG 60.024 45.833 0.00 0.00 0.00 4.45
803 810 5.065988 GTCACCTTTGCTGAGAAGTGTTTTA 59.934 40.000 0.00 0.00 0.00 1.52
1080 3064 4.825679 GGTGGGGGAGGAGAGGGG 62.826 77.778 0.00 0.00 0.00 4.79
1106 3093 0.178998 CCAGAGGGATTGGATGGCAG 60.179 60.000 0.00 0.00 37.96 4.85
1108 3095 0.259938 AACCAGAGGGATTGGATGGC 59.740 55.000 0.00 0.00 39.08 4.40
1135 3122 1.135489 CGCAAGCAAATCAGCAGTGAT 60.135 47.619 0.00 0.00 46.01 3.06
1136 3123 0.239082 CGCAAGCAAATCAGCAGTGA 59.761 50.000 0.00 0.00 37.02 3.41
1137 3124 2.720688 CGCAAGCAAATCAGCAGTG 58.279 52.632 0.00 0.00 36.85 3.66
1196 3191 2.223502 GCGAACTGGACGAGATGTGATA 60.224 50.000 0.00 0.00 0.00 2.15
1205 3200 1.736126 CTGTAGTAGCGAACTGGACGA 59.264 52.381 5.15 0.00 39.39 4.20
1316 3319 0.741221 GCTAGTTCAAGCTGACCCCG 60.741 60.000 0.00 0.00 39.50 5.73
1321 3324 1.970640 TGACCTGCTAGTTCAAGCTGA 59.029 47.619 4.54 0.00 42.27 4.26
1409 3413 2.072298 GAGGAACACTACAGCTTGCTG 58.928 52.381 19.62 19.62 0.00 4.41
1436 3440 4.091509 CCTCGAACTGAACAATAGAAACGG 59.908 45.833 0.00 0.00 0.00 4.44
1561 3565 4.967084 TCCCTTAAAATCCGCTATAGCA 57.033 40.909 23.99 6.37 42.21 3.49
1571 3575 7.210174 GGGAAAATAGCACATCCCTTAAAATC 58.790 38.462 2.43 0.00 46.65 2.17
1594 3598 4.836125 ATAAAAATGAGCGTGCTATGGG 57.164 40.909 0.00 0.00 0.00 4.00
1595 3599 5.009010 AGGAATAAAAATGAGCGTGCTATGG 59.991 40.000 0.00 0.00 0.00 2.74
1727 3734 3.481839 CATCGACGTGTAGTTGTACGAA 58.518 45.455 0.00 0.00 42.54 3.85
1921 3928 4.403432 CCAATGTATGTGGATCCAGCTTTT 59.597 41.667 16.81 1.70 38.54 2.27
1929 3936 5.640732 GTGTTTCACCAATGTATGTGGATC 58.359 41.667 0.00 0.00 39.62 3.36
1930 3937 4.155826 CGTGTTTCACCAATGTATGTGGAT 59.844 41.667 0.00 0.00 39.62 3.41
2080 4088 0.106149 ACGGTTCGCTCCTTTCTGTT 59.894 50.000 0.00 0.00 0.00 3.16
2099 4107 0.178921 AGTGCCTCTGACCTCTTCCA 60.179 55.000 0.00 0.00 0.00 3.53
2174 4182 2.015736 AGCCGTGTGATGCTAAAGAG 57.984 50.000 0.00 0.00 35.69 2.85
2187 4195 8.336806 TGGTATCGTAAAATAAATAAAGCCGTG 58.663 33.333 0.00 0.00 0.00 4.94
2190 4198 7.799914 CGGTGGTATCGTAAAATAAATAAAGCC 59.200 37.037 0.00 0.00 0.00 4.35
2247 4262 2.223805 CCAGAGACAACACAAAAAGGGC 60.224 50.000 0.00 0.00 0.00 5.19
2264 4280 9.667107 CAAAAGAGATACTGTAAAATACCCAGA 57.333 33.333 0.00 0.00 0.00 3.86
2272 4288 9.621629 TGAACTTCCAAAAGAGATACTGTAAAA 57.378 29.630 0.00 0.00 36.30 1.52
2367 4383 8.915654 TCGATGATGTTTGATGTCTTATTATCG 58.084 33.333 0.00 0.00 34.30 2.92
2671 4688 9.502035 TCCTAGGTTTTTCATTCCTAAGATCTA 57.498 33.333 9.08 0.00 34.08 1.98
2672 4689 8.393959 TCCTAGGTTTTTCATTCCTAAGATCT 57.606 34.615 9.08 0.00 34.08 2.75
2724 4741 7.712264 TTTCTGCATTTCCTTATGTTTTGTG 57.288 32.000 0.00 0.00 0.00 3.33
2725 4742 8.729805 TTTTTCTGCATTTCCTTATGTTTTGT 57.270 26.923 0.00 0.00 0.00 2.83
2752 4769 4.413520 ACTCATTTGCATAGGACTGGGTAT 59.586 41.667 0.00 0.00 0.00 2.73
2753 4770 3.780294 ACTCATTTGCATAGGACTGGGTA 59.220 43.478 0.00 0.00 0.00 3.69
2754 4771 2.578021 ACTCATTTGCATAGGACTGGGT 59.422 45.455 0.00 0.00 0.00 4.51
2761 4778 2.734755 TCCCCACTCATTTGCATAGG 57.265 50.000 0.00 0.00 0.00 2.57
2766 4783 2.289010 CCACTTTTCCCCACTCATTTGC 60.289 50.000 0.00 0.00 0.00 3.68
2776 4793 1.686587 CCACTTCAACCACTTTTCCCC 59.313 52.381 0.00 0.00 0.00 4.81
2813 4830 7.865706 ATGGATTGCTTTCGTAACTAATTCT 57.134 32.000 0.00 0.00 0.00 2.40
2819 4836 7.807977 ATTCATATGGATTGCTTTCGTAACT 57.192 32.000 2.13 0.00 0.00 2.24
2855 4876 2.519691 AGGCCATTTGGGTCATAAGGAT 59.480 45.455 5.01 0.00 46.80 3.24
2865 4886 2.369394 GAACTACAGAGGCCATTTGGG 58.631 52.381 5.01 0.57 40.85 4.12
2871 4892 1.902508 CTTCAGGAACTACAGAGGCCA 59.097 52.381 5.01 0.00 36.02 5.36
2885 4906 7.408756 TTTTGTATGATTCCAATCCTTCAGG 57.591 36.000 0.00 0.00 34.50 3.86
2886 4907 9.525409 GAATTTTGTATGATTCCAATCCTTCAG 57.475 33.333 0.00 0.00 34.50 3.02
2887 4908 9.258629 AGAATTTTGTATGATTCCAATCCTTCA 57.741 29.630 0.00 0.00 33.72 3.02
2927 4953 1.177401 GTTGAGGGCCACTTTGGATC 58.823 55.000 6.18 0.00 40.96 3.36
3007 5033 6.590234 TGTTTCATCTAGTGCTACAGAGAA 57.410 37.500 0.00 0.00 0.00 2.87
3034 6304 7.609960 TCTTTCAGCATAGATCATAGATGTCC 58.390 38.462 0.00 0.00 0.00 4.02
3104 6458 7.278868 TGGCCAAAACAAATAACACAGTAAAAG 59.721 33.333 0.61 0.00 0.00 2.27
3112 6467 6.799926 ATTGATGGCCAAAACAAATAACAC 57.200 33.333 10.96 0.00 38.43 3.32
3143 6498 5.243060 GGTGAAAGTACACAGGGCTTATTTT 59.757 40.000 0.00 0.00 41.88 1.82
3199 6561 9.887629 TTGGACGGACATAAATAGTAAATAACA 57.112 29.630 0.00 0.00 0.00 2.41
3207 6569 5.123227 CACCATTGGACGGACATAAATAGT 58.877 41.667 10.37 0.00 0.00 2.12
3245 6607 4.900635 AGCAACCTGAAACAGTTTGTAG 57.099 40.909 2.34 1.80 36.48 2.74
3314 6676 1.272807 AGGCTAGGTCCGCTTTAACA 58.727 50.000 0.00 0.00 0.00 2.41
3385 6747 3.418684 TGACCCCTTTCTGCTTAGTTC 57.581 47.619 0.00 0.00 0.00 3.01
3453 6815 8.655970 GGTGCAAACAATATAACTCCAAATTTC 58.344 33.333 0.00 0.00 0.00 2.17
3456 6818 7.238486 TGGTGCAAACAATATAACTCCAAAT 57.762 32.000 0.00 0.00 0.00 2.32
3544 6906 0.038166 GCAGTTCCACCCATCTTGGA 59.962 55.000 0.00 0.00 40.96 3.53
3546 6908 2.787473 TAGCAGTTCCACCCATCTTG 57.213 50.000 0.00 0.00 0.00 3.02
3578 7027 7.212976 ACTACTGATTACTGAGCAATGTATGG 58.787 38.462 0.00 0.00 0.00 2.74
3582 7031 7.411486 AGTACTACTGATTACTGAGCAATGT 57.589 36.000 0.00 0.00 0.00 2.71
3617 7066 6.317857 GCTGGAAGAAAGCAAATAGTAACAG 58.682 40.000 0.00 0.00 40.52 3.16
3629 7078 5.824904 TCATAGAATTGCTGGAAGAAAGC 57.175 39.130 0.00 0.00 32.70 3.51
3637 7086 3.624777 ACTGGGTTCATAGAATTGCTGG 58.375 45.455 0.00 0.00 0.00 4.85
3646 7095 6.092748 GCAACAAAATGTACTGGGTTCATAG 58.907 40.000 0.00 0.00 0.00 2.23
3648 7097 4.558496 CGCAACAAAATGTACTGGGTTCAT 60.558 41.667 0.00 0.00 0.00 2.57
3654 7103 3.243234 TGAACCGCAACAAAATGTACTGG 60.243 43.478 0.00 0.00 0.00 4.00
3670 7121 2.154462 AGCCAACTTTCATCTGAACCG 58.846 47.619 0.00 0.00 33.13 4.44
3749 7200 6.825721 ACTGATCAATAGAAGTTCCAATCACC 59.174 38.462 0.00 0.00 0.00 4.02
3771 7222 4.586841 ACTTTGAGAGGGCTAGCTATACTG 59.413 45.833 15.72 0.18 0.00 2.74
3811 7262 2.223203 GCATGCGGATCTGTTTCAAGAG 60.223 50.000 0.00 0.00 0.00 2.85
3818 7269 0.806868 CAGTTGCATGCGGATCTGTT 59.193 50.000 14.09 0.00 0.00 3.16
3849 7300 1.379642 CCAGCCTTGATTTCTCGGCC 61.380 60.000 0.00 0.00 43.48 6.13
3949 7400 0.179073 CCATCGCCAAAGGAGACGAT 60.179 55.000 0.00 0.00 45.45 3.73
3962 7413 3.851105 GCTGTCTTTCATATTGCCATCGC 60.851 47.826 0.00 0.00 0.00 4.58
3963 7414 3.313249 TGCTGTCTTTCATATTGCCATCG 59.687 43.478 0.00 0.00 0.00 3.84
4044 7495 6.522054 CGATACTTCTTCCTGGGCTAAATAA 58.478 40.000 0.00 0.00 0.00 1.40
4053 7504 0.249489 CGGGCGATACTTCTTCCTGG 60.249 60.000 0.00 0.00 0.00 4.45
4080 7531 0.034616 GGATCGGAGAATCTGGCCTG 59.965 60.000 3.32 2.92 43.33 4.85
4083 7534 1.043816 TGAGGATCGGAGAATCTGGC 58.956 55.000 0.00 0.00 43.33 4.85
4161 7612 1.292223 CTTCAAGGCGTTCCTCGGA 59.708 57.895 0.00 0.00 43.40 4.55
4236 7687 4.974721 AACCCACTGCAAGCCCCG 62.975 66.667 0.00 0.00 37.60 5.73
4342 7793 5.450171 CCCGTATACTCTTTATCTCACACG 58.550 45.833 0.56 0.00 0.00 4.49
4347 7798 5.241064 TGTCAGCCCGTATACTCTTTATCTC 59.759 44.000 0.56 0.00 0.00 2.75
4374 7825 5.762045 CCAACTTCACCAACACAAGAATAG 58.238 41.667 0.00 0.00 0.00 1.73
4406 7857 7.564793 ACACTTTGCCTATACATGAACAGATA 58.435 34.615 0.00 0.00 0.00 1.98
4408 7859 5.804639 ACACTTTGCCTATACATGAACAGA 58.195 37.500 0.00 0.00 0.00 3.41
4453 7904 4.414852 CAATCCTACAAGCATGAAAACCG 58.585 43.478 0.00 0.00 0.00 4.44
4472 7923 4.158786 TCACACCAATCCATTTCACCAAT 58.841 39.130 0.00 0.00 0.00 3.16
4551 8002 3.252974 AGACACGAACCTTGATCCATC 57.747 47.619 0.00 0.00 0.00 3.51
4648 8260 9.392259 GTCAGGTAAACCACTAGCTAAATATTT 57.608 33.333 5.89 5.89 38.89 1.40
4650 8262 7.126726 TGGTCAGGTAAACCACTAGCTAAATAT 59.873 37.037 1.26 0.00 41.84 1.28
4651 8263 6.441284 TGGTCAGGTAAACCACTAGCTAAATA 59.559 38.462 1.26 0.00 41.84 1.40
4652 8264 5.249852 TGGTCAGGTAAACCACTAGCTAAAT 59.750 40.000 1.26 0.00 41.84 1.40
4721 8354 3.188159 TGGTGTCTTTGGTACACTGAC 57.812 47.619 6.35 0.00 45.26 3.51
4724 8357 7.833285 AAAATTATGGTGTCTTTGGTACACT 57.167 32.000 6.35 0.00 45.26 3.55
4767 8400 4.641645 CGCCTCAACTGCCCCACA 62.642 66.667 0.00 0.00 0.00 4.17
4834 8467 5.243207 GTCTCCCTCTTTCCGTTTTGATTA 58.757 41.667 0.00 0.00 0.00 1.75
4846 8479 5.205056 AGATATGTTCTCGTCTCCCTCTTT 58.795 41.667 0.00 0.00 0.00 2.52
4879 8512 7.521529 CATTACATCGTTCAGTTTGTCATTCT 58.478 34.615 0.00 0.00 0.00 2.40
4898 8531 9.693739 TCCTATTAAAAAGAATCTGGCATTACA 57.306 29.630 0.00 0.00 0.00 2.41
4962 8596 2.159240 TCGTGAGGGATGAAATGAGACG 60.159 50.000 0.00 0.00 0.00 4.18
4966 8600 4.393834 TGTTTTCGTGAGGGATGAAATGA 58.606 39.130 0.00 0.00 38.98 2.57
5003 8637 6.326323 AGAAATTTAAAGACCTTTTCCCTGCA 59.674 34.615 0.00 0.00 34.23 4.41
5043 8677 2.550639 GCCACCATTCCTTTTTGTGCAT 60.551 45.455 0.00 0.00 0.00 3.96
5045 8679 1.511850 GCCACCATTCCTTTTTGTGC 58.488 50.000 0.00 0.00 0.00 4.57
5049 8683 2.337849 ACATGGCCACCATTCCTTTTT 58.662 42.857 8.16 0.00 42.23 1.94
5056 8690 2.603075 AACTGTACATGGCCACCATT 57.397 45.000 8.16 0.00 42.23 3.16
5058 8692 3.009584 TCATAAACTGTACATGGCCACCA 59.990 43.478 8.16 1.21 38.19 4.17
5059 8693 3.616219 TCATAAACTGTACATGGCCACC 58.384 45.455 8.16 0.00 0.00 4.61
5071 8705 3.756434 ACCGTGGAAACCATCATAAACTG 59.244 43.478 0.00 0.00 35.28 3.16
5082 8716 2.156098 TGCAAATAGACCGTGGAAACC 58.844 47.619 0.00 0.00 0.00 3.27
5085 8719 3.342377 TGATGCAAATAGACCGTGGAA 57.658 42.857 0.00 0.00 0.00 3.53
5086 8720 3.342377 TTGATGCAAATAGACCGTGGA 57.658 42.857 0.00 0.00 0.00 4.02
5104 8738 8.890124 TTTATGGGAATTGTATGCATTGATTG 57.110 30.769 3.54 0.00 0.00 2.67
5128 8762 7.500141 GGGGATACTGTATGCATCAAATTTTT 58.500 34.615 18.99 0.00 0.00 1.94
5129 8763 6.239008 CGGGGATACTGTATGCATCAAATTTT 60.239 38.462 18.99 0.00 0.00 1.82
5130 8764 5.241506 CGGGGATACTGTATGCATCAAATTT 59.758 40.000 18.99 0.00 0.00 1.82
5131 8765 4.761739 CGGGGATACTGTATGCATCAAATT 59.238 41.667 18.99 0.00 0.00 1.82
5132 8766 4.326826 CGGGGATACTGTATGCATCAAAT 58.673 43.478 18.99 0.00 0.00 2.32
5183 8817 6.260050 ACTCAACACGACAATCATAACAAAGT 59.740 34.615 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.