Multiple sequence alignment - TraesCS4A01G192300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G192300 chr4A 100.000 5047 0 0 1 5047 472917003 472922049 0.000000e+00 9321.0
1 TraesCS4A01G192300 chr4B 95.274 3893 122 26 737 4582 146498586 146494709 0.000000e+00 6113.0
2 TraesCS4A01G192300 chr4B 87.391 460 46 8 4590 5047 146494578 146494129 7.490000e-143 518.0
3 TraesCS4A01G192300 chr4B 77.043 257 45 9 1 255 423059006 423058762 8.810000e-28 135.0
4 TraesCS4A01G192300 chr4B 91.304 46 4 0 2596 2641 654689698 654689743 4.220000e-06 63.9
5 TraesCS4A01G192300 chr4B 91.304 46 4 0 2596 2641 654797620 654797665 4.220000e-06 63.9
6 TraesCS4A01G192300 chr4B 91.304 46 4 0 2596 2641 654835294 654835339 4.220000e-06 63.9
7 TraesCS4A01G192300 chr4D 94.177 2267 76 12 1490 3707 102168179 102165920 0.000000e+00 3404.0
8 TraesCS4A01G192300 chr4D 92.078 1174 66 8 3759 4918 102165920 102164760 0.000000e+00 1628.0
9 TraesCS4A01G192300 chr4D 95.326 706 26 6 733 1437 102168889 102168190 0.000000e+00 1114.0
10 TraesCS4A01G192300 chr5D 95.712 653 17 2 912 1553 320921299 320920647 0.000000e+00 1040.0
11 TraesCS4A01G192300 chr5D 93.760 657 30 3 912 1557 531913270 531913926 0.000000e+00 976.0
12 TraesCS4A01G192300 chr5D 86.575 365 34 7 999 1363 233508454 233508105 6.130000e-104 388.0
13 TraesCS4A01G192300 chr5D 91.358 162 5 2 1669 1821 531913924 531914085 3.960000e-51 213.0
14 TraesCS4A01G192300 chr5D 90.062 161 7 2 1670 1821 320920644 320920484 3.080000e-47 200.0
15 TraesCS4A01G192300 chr3A 93.303 657 33 3 912 1557 645742465 645741809 0.000000e+00 959.0
16 TraesCS4A01G192300 chr3A 90.868 657 49 2 912 1557 260681371 260680715 0.000000e+00 870.0
17 TraesCS4A01G192300 chr3A 90.280 607 21 5 1669 2264 260680717 260680138 0.000000e+00 760.0
18 TraesCS4A01G192300 chr3A 90.296 608 20 15 1669 2264 645741811 645741231 0.000000e+00 760.0
19 TraesCS4A01G192300 chr3A 88.138 607 32 14 1669 2264 36857536 36856959 0.000000e+00 686.0
20 TraesCS4A01G192300 chr2A 92.214 655 41 3 7 660 526106061 526105416 0.000000e+00 918.0
21 TraesCS4A01G192300 chr2A 91.337 658 44 3 7 660 526117018 526116370 0.000000e+00 887.0
22 TraesCS4A01G192300 chr2A 89.786 607 23 7 1669 2264 575784110 575783532 0.000000e+00 741.0
23 TraesCS4A01G192300 chr2A 92.913 254 12 1 1310 1557 303688567 303688314 1.030000e-96 364.0
24 TraesCS4A01G192300 chr2A 90.741 162 5 3 1669 1821 303688316 303688156 1.840000e-49 207.0
25 TraesCS4A01G192300 chr2A 73.450 516 121 13 156 661 743081609 743081100 4.010000e-41 180.0
26 TraesCS4A01G192300 chr3D 89.786 607 24 5 1669 2264 418847430 418848009 0.000000e+00 743.0
27 TraesCS4A01G192300 chr3D 93.911 427 20 2 1137 1557 418847006 418847432 1.530000e-179 640.0
28 TraesCS4A01G192300 chr3D 87.692 65 5 2 4986 5047 579034603 579034667 7.010000e-09 73.1
29 TraesCS4A01G192300 chr7A 89.786 607 22 7 1669 2264 627185446 627186023 0.000000e+00 741.0
30 TraesCS4A01G192300 chr7A 92.520 254 13 2 1310 1557 627185195 627185448 4.800000e-95 359.0
31 TraesCS4A01G192300 chr7A 92.520 254 12 3 1310 1557 595556973 595557225 1.730000e-94 357.0
32 TraesCS4A01G192300 chrUn 88.980 608 27 16 1669 2264 74792526 74793105 0.000000e+00 715.0
33 TraesCS4A01G192300 chrUn 93.701 254 10 1 1310 1557 74792275 74792528 4.770000e-100 375.0
34 TraesCS4A01G192300 chr3B 84.266 661 100 4 1 660 465962639 465961982 4.260000e-180 641.0
35 TraesCS4A01G192300 chr7D 88.184 457 51 3 206 660 488557809 488557354 4.440000e-150 542.0
36 TraesCS4A01G192300 chr7D 86.747 166 20 1 1 166 488557977 488557814 3.100000e-42 183.0
37 TraesCS4A01G192300 chr5B 86.849 365 33 7 999 1363 271300572 271300921 1.320000e-105 394.0
38 TraesCS4A01G192300 chr5B 78.544 522 110 2 141 660 539088773 539088252 4.840000e-90 342.0
39 TraesCS4A01G192300 chr5A 85.753 365 37 7 999 1363 321720935 321720586 6.170000e-99 372.0
40 TraesCS4A01G192300 chr6A 76.408 657 137 14 15 660 26888616 26887967 6.260000e-89 339.0
41 TraesCS4A01G192300 chr7B 75.495 657 153 8 9 660 202764048 202764701 1.050000e-81 315.0
42 TraesCS4A01G192300 chr2B 81.197 234 38 5 1 231 755984728 755984958 3.100000e-42 183.0
43 TraesCS4A01G192300 chr1D 87.121 132 15 2 530 660 112819895 112819765 1.130000e-31 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G192300 chr4A 472917003 472922049 5046 False 9321.000000 9321 100.000000 1 5047 1 chr4A.!!$F1 5046
1 TraesCS4A01G192300 chr4B 146494129 146498586 4457 True 3315.500000 6113 91.332500 737 5047 2 chr4B.!!$R2 4310
2 TraesCS4A01G192300 chr4D 102164760 102168889 4129 True 2048.666667 3404 93.860333 733 4918 3 chr4D.!!$R1 4185
3 TraesCS4A01G192300 chr5D 320920484 320921299 815 True 620.000000 1040 92.887000 912 1821 2 chr5D.!!$R2 909
4 TraesCS4A01G192300 chr5D 531913270 531914085 815 False 594.500000 976 92.559000 912 1821 2 chr5D.!!$F1 909
5 TraesCS4A01G192300 chr3A 645741231 645742465 1234 True 859.500000 959 91.799500 912 2264 2 chr3A.!!$R3 1352
6 TraesCS4A01G192300 chr3A 260680138 260681371 1233 True 815.000000 870 90.574000 912 2264 2 chr3A.!!$R2 1352
7 TraesCS4A01G192300 chr3A 36856959 36857536 577 True 686.000000 686 88.138000 1669 2264 1 chr3A.!!$R1 595
8 TraesCS4A01G192300 chr2A 526105416 526106061 645 True 918.000000 918 92.214000 7 660 1 chr2A.!!$R1 653
9 TraesCS4A01G192300 chr2A 526116370 526117018 648 True 887.000000 887 91.337000 7 660 1 chr2A.!!$R2 653
10 TraesCS4A01G192300 chr2A 575783532 575784110 578 True 741.000000 741 89.786000 1669 2264 1 chr2A.!!$R3 595
11 TraesCS4A01G192300 chr3D 418847006 418848009 1003 False 691.500000 743 91.848500 1137 2264 2 chr3D.!!$F2 1127
12 TraesCS4A01G192300 chr7A 627185195 627186023 828 False 550.000000 741 91.153000 1310 2264 2 chr7A.!!$F2 954
13 TraesCS4A01G192300 chrUn 74792275 74793105 830 False 545.000000 715 91.340500 1310 2264 2 chrUn.!!$F1 954
14 TraesCS4A01G192300 chr3B 465961982 465962639 657 True 641.000000 641 84.266000 1 660 1 chr3B.!!$R1 659
15 TraesCS4A01G192300 chr7D 488557354 488557977 623 True 362.500000 542 87.465500 1 660 2 chr7D.!!$R1 659
16 TraesCS4A01G192300 chr5B 539088252 539088773 521 True 342.000000 342 78.544000 141 660 1 chr5B.!!$R1 519
17 TraesCS4A01G192300 chr6A 26887967 26888616 649 True 339.000000 339 76.408000 15 660 1 chr6A.!!$R1 645
18 TraesCS4A01G192300 chr7B 202764048 202764701 653 False 315.000000 315 75.495000 9 660 1 chr7B.!!$F1 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
659 661 0.035820 TTTATGTGCGAGGTGGACCC 60.036 55.000 0.0 0.0 38.31 4.46 F
831 833 0.318699 TCGTTCTCAAGTCAGCCACG 60.319 55.000 0.0 0.0 0.00 4.94 F
867 869 0.666374 CCGCTTCACCCGTTTCTTTT 59.334 50.000 0.0 0.0 0.00 2.27 F
1506 1781 3.466836 TGAACTCTGAGTTTTGCATCGT 58.533 40.909 22.8 0.0 38.80 3.73 F
2556 2848 1.073923 ACTGGTTTACAAGCCCCTCTG 59.926 52.381 0.0 0.0 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1824 2110 0.842635 CTCTCTGGATTTGGAGGGGG 59.157 60.000 0.0 0.0 0.00 5.40 R
2523 2815 0.977395 AACCAGTCCAGAGGCAGTAC 59.023 55.000 0.0 0.0 0.00 2.73 R
2556 2848 4.454847 GGTCAAAGTTAGGCTCAAAGTACC 59.545 45.833 0.0 0.0 0.00 3.34 R
3053 3346 0.247460 TTCTGACCATCTCGGCTGTG 59.753 55.000 0.0 0.0 39.03 3.66 R
4512 4859 0.323302 TGCTCATTACAGTTCCCGCA 59.677 50.000 0.0 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 1.131638 TGAACTGGGCTTCTCTGTGT 58.868 50.000 0.00 0.00 0.00 3.72
166 167 0.453282 CAATTGCAGACCACTTCGCG 60.453 55.000 0.00 0.00 0.00 5.87
170 171 4.379243 CAGACCACTTCGCGGCCT 62.379 66.667 6.13 0.00 0.00 5.19
171 172 4.070552 AGACCACTTCGCGGCCTC 62.071 66.667 6.13 0.00 0.00 4.70
172 173 4.070552 GACCACTTCGCGGCCTCT 62.071 66.667 6.13 0.00 0.00 3.69
173 174 3.591254 GACCACTTCGCGGCCTCTT 62.591 63.158 6.13 0.00 0.00 2.85
180 182 2.006888 CTTCGCGGCCTCTTATTTTCA 58.993 47.619 6.13 0.00 0.00 2.69
285 287 4.049640 GCCGCCGTTTTGCCATCA 62.050 61.111 0.00 0.00 0.00 3.07
294 296 0.413037 TTTTGCCATCACCAGGGGAT 59.587 50.000 0.00 0.00 0.00 3.85
307 309 0.105607 AGGGGATACGGAGGAGTTCC 60.106 60.000 0.00 0.00 43.04 3.62
325 327 1.639635 CCTGCTATGAGGGCCCAGTT 61.640 60.000 27.56 10.32 0.00 3.16
336 338 2.109126 GCCCAGTTGCGTCCTCATC 61.109 63.158 0.00 0.00 0.00 2.92
344 346 3.133014 CGTCCTCATCGCTGGGAT 58.867 61.111 0.79 0.79 35.09 3.85
345 347 1.006805 CGTCCTCATCGCTGGGATC 60.007 63.158 4.00 0.00 31.28 3.36
346 348 1.006805 GTCCTCATCGCTGGGATCG 60.007 63.158 4.00 1.68 31.28 3.69
349 351 1.371022 CTCATCGCTGGGATCGTCG 60.371 63.158 4.00 0.00 31.28 5.12
358 360 1.521681 GGGATCGTCGCCTCCTTTG 60.522 63.158 11.84 0.00 0.00 2.77
362 364 3.423154 CGTCGCCTCCTTTGGTGC 61.423 66.667 0.00 0.00 37.51 5.01
368 370 4.697756 CTCCTTTGGTGCCGGCGA 62.698 66.667 23.90 9.99 0.00 5.54
371 373 3.864686 CTTTGGTGCCGGCGATCG 61.865 66.667 23.90 11.69 38.88 3.69
401 403 0.321653 GCCGTTCCCTGTGTCTTCAT 60.322 55.000 0.00 0.00 0.00 2.57
407 409 0.902531 CCCTGTGTCTTCATACCCGT 59.097 55.000 0.00 0.00 0.00 5.28
412 414 1.471684 GTGTCTTCATACCCGTCGTCT 59.528 52.381 0.00 0.00 0.00 4.18
413 415 2.094854 GTGTCTTCATACCCGTCGTCTT 60.095 50.000 0.00 0.00 0.00 3.01
423 425 4.047059 GTCGTCTTCGCCGTCCCA 62.047 66.667 0.00 0.00 36.96 4.37
428 430 3.382832 CTTCGCCGTCCCAGGAGT 61.383 66.667 0.00 0.00 32.66 3.85
429 431 2.036098 TTCGCCGTCCCAGGAGTA 59.964 61.111 0.00 0.00 32.66 2.59
444 446 4.874977 GTAGCCGCCGCACTCCTC 62.875 72.222 0.00 0.00 37.52 3.71
466 468 2.112198 GCCGCCGTTCCATCATTCA 61.112 57.895 0.00 0.00 0.00 2.57
469 471 0.588252 CGCCGTTCCATCATTCATCC 59.412 55.000 0.00 0.00 0.00 3.51
488 490 3.866582 CTCCGCCATGTCCTCCCC 61.867 72.222 0.00 0.00 0.00 4.81
489 491 4.731853 TCCGCCATGTCCTCCCCA 62.732 66.667 0.00 0.00 0.00 4.96
490 492 4.489771 CCGCCATGTCCTCCCCAC 62.490 72.222 0.00 0.00 0.00 4.61
491 493 4.489771 CGCCATGTCCTCCCCACC 62.490 72.222 0.00 0.00 0.00 4.61
492 494 3.338250 GCCATGTCCTCCCCACCA 61.338 66.667 0.00 0.00 0.00 4.17
493 495 3.001514 CCATGTCCTCCCCACCAG 58.998 66.667 0.00 0.00 0.00 4.00
494 496 1.616327 CCATGTCCTCCCCACCAGA 60.616 63.158 0.00 0.00 0.00 3.86
495 497 1.207488 CCATGTCCTCCCCACCAGAA 61.207 60.000 0.00 0.00 0.00 3.02
496 498 0.254178 CATGTCCTCCCCACCAGAAG 59.746 60.000 0.00 0.00 0.00 2.85
497 499 0.916358 ATGTCCTCCCCACCAGAAGG 60.916 60.000 0.00 0.00 42.21 3.46
498 500 1.229529 GTCCTCCCCACCAGAAGGA 60.230 63.158 0.00 0.00 38.69 3.36
499 501 1.081092 TCCTCCCCACCAGAAGGAG 59.919 63.158 0.00 0.00 45.72 3.69
501 503 4.896979 TCCCCACCAGAAGGAGAG 57.103 61.111 0.00 0.00 38.69 3.20
502 504 1.613630 TCCCCACCAGAAGGAGAGC 60.614 63.158 0.00 0.00 38.69 4.09
503 505 1.920325 CCCCACCAGAAGGAGAGCA 60.920 63.158 0.00 0.00 38.69 4.26
504 506 1.492133 CCCCACCAGAAGGAGAGCAA 61.492 60.000 0.00 0.00 38.69 3.91
505 507 0.322008 CCCACCAGAAGGAGAGCAAC 60.322 60.000 0.00 0.00 38.69 4.17
506 508 0.397941 CCACCAGAAGGAGAGCAACA 59.602 55.000 0.00 0.00 38.69 3.33
507 509 1.517242 CACCAGAAGGAGAGCAACAC 58.483 55.000 0.00 0.00 38.69 3.32
508 510 1.071385 CACCAGAAGGAGAGCAACACT 59.929 52.381 0.00 0.00 38.69 3.55
509 511 1.346068 ACCAGAAGGAGAGCAACACTC 59.654 52.381 0.00 0.00 41.44 3.51
516 518 2.432628 GAGCAACACTCCGACCCG 60.433 66.667 0.00 0.00 39.75 5.28
517 519 4.681978 AGCAACACTCCGACCCGC 62.682 66.667 0.00 0.00 0.00 6.13
518 520 4.980805 GCAACACTCCGACCCGCA 62.981 66.667 0.00 0.00 0.00 5.69
519 521 3.041940 CAACACTCCGACCCGCAC 61.042 66.667 0.00 0.00 0.00 5.34
520 522 4.657824 AACACTCCGACCCGCACG 62.658 66.667 0.00 0.00 0.00 5.34
522 524 3.740397 CACTCCGACCCGCACGTA 61.740 66.667 0.00 0.00 0.00 3.57
523 525 2.985282 ACTCCGACCCGCACGTAA 60.985 61.111 0.00 0.00 0.00 3.18
525 527 3.695022 CTCCGACCCGCACGTAAGG 62.695 68.421 0.00 0.00 46.39 2.69
526 528 3.751246 CCGACCCGCACGTAAGGA 61.751 66.667 9.76 0.00 46.39 3.36
527 529 2.259204 CGACCCGCACGTAAGGAA 59.741 61.111 9.76 0.00 46.39 3.36
528 530 1.153706 CGACCCGCACGTAAGGAAT 60.154 57.895 9.76 0.00 46.39 3.01
529 531 1.143969 CGACCCGCACGTAAGGAATC 61.144 60.000 9.76 6.40 46.39 2.52
530 532 1.143969 GACCCGCACGTAAGGAATCG 61.144 60.000 9.76 0.00 46.39 3.34
531 533 2.522638 CCCGCACGTAAGGAATCGC 61.523 63.158 9.76 0.00 46.39 4.58
532 534 2.522638 CCGCACGTAAGGAATCGCC 61.523 63.158 2.57 0.00 46.39 5.54
533 535 2.856346 CGCACGTAAGGAATCGCCG 61.856 63.158 0.00 0.00 43.43 6.46
534 536 3.003478 CACGTAAGGAATCGCCGC 58.997 61.111 0.00 0.00 43.43 6.53
535 537 2.202837 ACGTAAGGAATCGCCGCC 60.203 61.111 0.00 0.00 43.43 6.13
536 538 3.327754 CGTAAGGAATCGCCGCCG 61.328 66.667 0.00 0.00 43.43 6.46
553 555 4.222847 GATCCCTCCCGTGCCGTC 62.223 72.222 0.00 0.00 0.00 4.79
558 560 3.518998 CTCCCGTGCCGTCGAGAT 61.519 66.667 0.00 0.00 0.00 2.75
559 561 3.471244 CTCCCGTGCCGTCGAGATC 62.471 68.421 0.00 0.00 0.00 2.75
560 562 4.570663 CCCGTGCCGTCGAGATCC 62.571 72.222 0.00 0.00 0.00 3.36
561 563 3.518998 CCGTGCCGTCGAGATCCT 61.519 66.667 0.00 0.00 0.00 3.24
562 564 2.024871 CGTGCCGTCGAGATCCTC 59.975 66.667 0.00 0.00 0.00 3.71
563 565 2.761195 CGTGCCGTCGAGATCCTCA 61.761 63.158 0.00 0.00 0.00 3.86
564 566 1.226717 GTGCCGTCGAGATCCTCAC 60.227 63.158 0.00 0.00 0.00 3.51
565 567 2.413765 GCCGTCGAGATCCTCACC 59.586 66.667 0.00 0.00 0.00 4.02
566 568 2.716244 CCGTCGAGATCCTCACCG 59.284 66.667 0.00 0.00 0.00 4.94
567 569 2.024871 CGTCGAGATCCTCACCGC 59.975 66.667 0.00 0.00 0.00 5.68
568 570 2.413765 GTCGAGATCCTCACCGCC 59.586 66.667 0.00 0.00 0.00 6.13
569 571 2.044352 TCGAGATCCTCACCGCCA 60.044 61.111 0.00 0.00 0.00 5.69
570 572 2.105128 CGAGATCCTCACCGCCAC 59.895 66.667 0.00 0.00 0.00 5.01
571 573 2.501610 GAGATCCTCACCGCCACC 59.498 66.667 0.00 0.00 0.00 4.61
572 574 3.432051 GAGATCCTCACCGCCACCG 62.432 68.421 0.00 0.00 0.00 4.94
583 585 4.700365 GCCACCGCTCGCAAAACC 62.700 66.667 0.00 0.00 0.00 3.27
584 586 4.038080 CCACCGCTCGCAAAACCC 62.038 66.667 0.00 0.00 0.00 4.11
585 587 2.978010 CACCGCTCGCAAAACCCT 60.978 61.111 0.00 0.00 0.00 4.34
586 588 1.669760 CACCGCTCGCAAAACCCTA 60.670 57.895 0.00 0.00 0.00 3.53
587 589 1.071814 ACCGCTCGCAAAACCCTAA 59.928 52.632 0.00 0.00 0.00 2.69
588 590 1.232621 ACCGCTCGCAAAACCCTAAC 61.233 55.000 0.00 0.00 0.00 2.34
589 591 1.500396 CGCTCGCAAAACCCTAACC 59.500 57.895 0.00 0.00 0.00 2.85
590 592 1.880894 GCTCGCAAAACCCTAACCC 59.119 57.895 0.00 0.00 0.00 4.11
591 593 0.608308 GCTCGCAAAACCCTAACCCT 60.608 55.000 0.00 0.00 0.00 4.34
592 594 1.339342 GCTCGCAAAACCCTAACCCTA 60.339 52.381 0.00 0.00 0.00 3.53
593 595 2.629051 CTCGCAAAACCCTAACCCTAG 58.371 52.381 0.00 0.00 0.00 3.02
594 596 1.092348 CGCAAAACCCTAACCCTAGC 58.908 55.000 0.00 0.00 0.00 3.42
595 597 1.092348 GCAAAACCCTAACCCTAGCG 58.908 55.000 0.00 0.00 0.00 4.26
596 598 1.092348 CAAAACCCTAACCCTAGCGC 58.908 55.000 0.00 0.00 0.00 5.92
597 599 0.989602 AAAACCCTAACCCTAGCGCT 59.010 50.000 17.26 17.26 0.00 5.92
598 600 0.989602 AAACCCTAACCCTAGCGCTT 59.010 50.000 18.68 0.00 0.00 4.68
599 601 0.252197 AACCCTAACCCTAGCGCTTG 59.748 55.000 18.68 14.96 0.00 4.01
600 602 0.616679 ACCCTAACCCTAGCGCTTGA 60.617 55.000 18.68 0.00 0.00 3.02
601 603 0.105039 CCCTAACCCTAGCGCTTGAG 59.895 60.000 18.68 7.14 0.00 3.02
602 604 0.530870 CCTAACCCTAGCGCTTGAGC 60.531 60.000 18.68 0.00 37.78 4.26
603 605 0.530870 CTAACCCTAGCGCTTGAGCC 60.531 60.000 18.68 0.00 37.91 4.70
604 606 2.292794 TAACCCTAGCGCTTGAGCCG 62.293 60.000 18.68 2.98 37.91 5.52
605 607 3.838271 CCCTAGCGCTTGAGCCGA 61.838 66.667 18.68 0.00 37.91 5.54
606 608 2.419198 CCTAGCGCTTGAGCCGAT 59.581 61.111 18.68 0.00 37.91 4.18
607 609 1.663074 CCTAGCGCTTGAGCCGATC 60.663 63.158 18.68 0.00 37.91 3.69
608 610 2.013483 CTAGCGCTTGAGCCGATCG 61.013 63.158 18.68 8.51 37.91 3.69
619 621 2.628106 CCGATCGCTTGGCAATCG 59.372 61.111 16.67 16.67 34.86 3.34
620 622 2.052766 CGATCGCTTGGCAATCGC 60.053 61.111 17.83 9.81 37.44 4.58
630 632 2.329339 GCAATCGCCTCAATCGCC 59.671 61.111 0.00 0.00 0.00 5.54
631 633 2.182842 GCAATCGCCTCAATCGCCT 61.183 57.895 0.00 0.00 0.00 5.52
632 634 0.880278 GCAATCGCCTCAATCGCCTA 60.880 55.000 0.00 0.00 0.00 3.93
633 635 1.800805 CAATCGCCTCAATCGCCTAT 58.199 50.000 0.00 0.00 0.00 2.57
634 636 1.728971 CAATCGCCTCAATCGCCTATC 59.271 52.381 0.00 0.00 0.00 2.08
635 637 0.247736 ATCGCCTCAATCGCCTATCC 59.752 55.000 0.00 0.00 0.00 2.59
636 638 1.734477 CGCCTCAATCGCCTATCCG 60.734 63.158 0.00 0.00 0.00 4.18
637 639 1.367840 GCCTCAATCGCCTATCCGT 59.632 57.895 0.00 0.00 0.00 4.69
638 640 0.946221 GCCTCAATCGCCTATCCGTG 60.946 60.000 0.00 0.00 0.00 4.94
639 641 0.389391 CCTCAATCGCCTATCCGTGT 59.611 55.000 0.00 0.00 0.00 4.49
640 642 1.202533 CCTCAATCGCCTATCCGTGTT 60.203 52.381 0.00 0.00 0.00 3.32
641 643 2.550978 CTCAATCGCCTATCCGTGTTT 58.449 47.619 0.00 0.00 0.00 2.83
642 644 2.936498 CTCAATCGCCTATCCGTGTTTT 59.064 45.455 0.00 0.00 0.00 2.43
643 645 4.116961 CTCAATCGCCTATCCGTGTTTTA 58.883 43.478 0.00 0.00 0.00 1.52
644 646 4.699637 TCAATCGCCTATCCGTGTTTTAT 58.300 39.130 0.00 0.00 0.00 1.40
645 647 4.509970 TCAATCGCCTATCCGTGTTTTATG 59.490 41.667 0.00 0.00 0.00 1.90
646 648 3.530265 TCGCCTATCCGTGTTTTATGT 57.470 42.857 0.00 0.00 0.00 2.29
647 649 3.191669 TCGCCTATCCGTGTTTTATGTG 58.808 45.455 0.00 0.00 0.00 3.21
648 650 2.286184 CGCCTATCCGTGTTTTATGTGC 60.286 50.000 0.00 0.00 0.00 4.57
649 651 2.286184 GCCTATCCGTGTTTTATGTGCG 60.286 50.000 0.00 0.00 0.00 5.34
650 652 3.191669 CCTATCCGTGTTTTATGTGCGA 58.808 45.455 0.00 0.00 0.00 5.10
651 653 3.245284 CCTATCCGTGTTTTATGTGCGAG 59.755 47.826 0.00 0.00 0.00 5.03
652 654 1.434555 TCCGTGTTTTATGTGCGAGG 58.565 50.000 0.00 0.00 0.00 4.63
653 655 1.153353 CCGTGTTTTATGTGCGAGGT 58.847 50.000 0.00 0.00 0.00 3.85
654 656 1.136085 CCGTGTTTTATGTGCGAGGTG 60.136 52.381 0.00 0.00 0.00 4.00
655 657 1.136085 CGTGTTTTATGTGCGAGGTGG 60.136 52.381 0.00 0.00 0.00 4.61
656 658 2.147958 GTGTTTTATGTGCGAGGTGGA 58.852 47.619 0.00 0.00 0.00 4.02
657 659 2.095919 GTGTTTTATGTGCGAGGTGGAC 60.096 50.000 0.00 0.00 39.78 4.02
658 660 1.467342 GTTTTATGTGCGAGGTGGACC 59.533 52.381 0.00 0.00 38.31 4.46
659 661 0.035820 TTTATGTGCGAGGTGGACCC 60.036 55.000 0.00 0.00 38.31 4.46
661 663 1.613317 TATGTGCGAGGTGGACCCTG 61.613 60.000 0.00 0.00 46.51 4.45
662 664 4.394712 GTGCGAGGTGGACCCTGG 62.395 72.222 0.00 0.00 46.51 4.45
665 667 4.715130 CGAGGTGGACCCTGGGGA 62.715 72.222 18.88 0.00 46.51 4.81
666 668 3.009714 GAGGTGGACCCTGGGGAC 61.010 72.222 18.88 9.87 46.51 4.46
667 669 3.864983 GAGGTGGACCCTGGGGACA 62.865 68.421 18.88 12.60 46.51 4.02
668 670 3.647771 GGTGGACCCTGGGGACAC 61.648 72.222 25.22 25.22 41.84 3.67
669 671 4.016706 GTGGACCCTGGGGACACG 62.017 72.222 21.17 0.00 37.13 4.49
670 672 4.567597 TGGACCCTGGGGACACGT 62.568 66.667 18.88 0.00 38.96 4.49
671 673 4.016706 GGACCCTGGGGACACGTG 62.017 72.222 18.88 15.48 38.96 4.49
672 674 3.239253 GACCCTGGGGACACGTGT 61.239 66.667 23.64 23.64 38.96 4.49
673 675 2.770904 ACCCTGGGGACACGTGTT 60.771 61.111 24.26 6.49 38.96 3.32
674 676 1.459921 ACCCTGGGGACACGTGTTA 60.460 57.895 24.26 8.99 38.96 2.41
675 677 1.055551 ACCCTGGGGACACGTGTTAA 61.056 55.000 24.26 7.94 38.96 2.01
676 678 0.326927 CCCTGGGGACACGTGTTAAT 59.673 55.000 24.26 0.00 37.50 1.40
677 679 1.677820 CCCTGGGGACACGTGTTAATC 60.678 57.143 24.26 9.73 37.50 1.75
678 680 1.355971 CTGGGGACACGTGTTAATCG 58.644 55.000 24.26 8.16 35.60 3.34
679 681 0.967662 TGGGGACACGTGTTAATCGA 59.032 50.000 24.26 7.32 33.40 3.59
680 682 1.337074 TGGGGACACGTGTTAATCGAC 60.337 52.381 24.26 7.73 33.40 4.20
681 683 1.337074 GGGGACACGTGTTAATCGACA 60.337 52.381 24.26 0.00 0.00 4.35
682 684 1.990563 GGGACACGTGTTAATCGACAG 59.009 52.381 24.26 0.00 0.00 3.51
683 685 2.352030 GGGACACGTGTTAATCGACAGA 60.352 50.000 24.26 0.00 0.00 3.41
684 686 2.915463 GGACACGTGTTAATCGACAGAG 59.085 50.000 24.26 0.00 0.00 3.35
685 687 2.915463 GACACGTGTTAATCGACAGAGG 59.085 50.000 24.26 0.00 0.00 3.69
686 688 2.295349 ACACGTGTTAATCGACAGAGGT 59.705 45.455 17.22 0.00 0.00 3.85
687 689 2.661675 CACGTGTTAATCGACAGAGGTG 59.338 50.000 7.58 0.00 0.00 4.00
688 690 2.259618 CGTGTTAATCGACAGAGGTGG 58.740 52.381 0.00 0.00 0.00 4.61
689 691 2.352421 CGTGTTAATCGACAGAGGTGGT 60.352 50.000 0.00 0.00 0.00 4.16
690 692 3.660865 GTGTTAATCGACAGAGGTGGTT 58.339 45.455 0.00 0.00 0.00 3.67
691 693 4.062991 GTGTTAATCGACAGAGGTGGTTT 58.937 43.478 0.00 0.00 0.00 3.27
692 694 4.062293 TGTTAATCGACAGAGGTGGTTTG 58.938 43.478 0.00 0.00 0.00 2.93
693 695 1.523758 AATCGACAGAGGTGGTTTGC 58.476 50.000 0.00 0.00 0.00 3.68
694 696 0.670546 ATCGACAGAGGTGGTTTGCG 60.671 55.000 0.00 0.00 0.00 4.85
695 697 2.317609 CGACAGAGGTGGTTTGCGG 61.318 63.158 0.00 0.00 0.00 5.69
696 698 1.070786 GACAGAGGTGGTTTGCGGA 59.929 57.895 0.00 0.00 0.00 5.54
697 699 0.951040 GACAGAGGTGGTTTGCGGAG 60.951 60.000 0.00 0.00 0.00 4.63
698 700 1.371183 CAGAGGTGGTTTGCGGAGA 59.629 57.895 0.00 0.00 0.00 3.71
699 701 0.951040 CAGAGGTGGTTTGCGGAGAC 60.951 60.000 0.00 0.00 0.00 3.36
713 715 2.141535 GGAGACGAGAAATCATCCGG 57.858 55.000 0.00 0.00 0.00 5.14
714 716 1.409427 GGAGACGAGAAATCATCCGGT 59.591 52.381 0.00 0.00 0.00 5.28
715 717 2.621998 GGAGACGAGAAATCATCCGGTA 59.378 50.000 0.00 0.00 0.00 4.02
716 718 3.304794 GGAGACGAGAAATCATCCGGTAG 60.305 52.174 0.00 0.00 0.00 3.18
717 719 3.552875 AGACGAGAAATCATCCGGTAGA 58.447 45.455 0.00 0.31 0.00 2.59
718 720 4.145807 AGACGAGAAATCATCCGGTAGAT 58.854 43.478 0.00 3.17 34.66 1.98
719 721 4.585162 AGACGAGAAATCATCCGGTAGATT 59.415 41.667 15.27 15.27 36.09 2.40
720 722 5.069251 AGACGAGAAATCATCCGGTAGATTT 59.931 40.000 25.83 25.83 44.61 2.17
721 723 5.671493 ACGAGAAATCATCCGGTAGATTTT 58.329 37.500 26.08 19.17 42.67 1.82
722 724 6.812998 ACGAGAAATCATCCGGTAGATTTTA 58.187 36.000 26.08 0.00 42.67 1.52
723 725 7.270047 ACGAGAAATCATCCGGTAGATTTTAA 58.730 34.615 26.08 0.00 42.67 1.52
724 726 7.767198 ACGAGAAATCATCCGGTAGATTTTAAA 59.233 33.333 26.08 0.00 42.67 1.52
725 727 8.062448 CGAGAAATCATCCGGTAGATTTTAAAC 58.938 37.037 26.08 17.88 42.67 2.01
726 728 8.801882 AGAAATCATCCGGTAGATTTTAAACA 57.198 30.769 26.08 0.00 42.67 2.83
727 729 9.408648 AGAAATCATCCGGTAGATTTTAAACAT 57.591 29.630 26.08 11.48 42.67 2.71
735 737 8.517056 TCCGGTAGATTTTAAACATTTTCCTTC 58.483 33.333 0.00 0.00 0.00 3.46
752 754 6.852420 TTCCTTCTTTTTAGAGGATCGAGA 57.148 37.500 0.00 0.00 42.67 4.04
770 772 2.200092 GAGGGGGTGGGCAAACAA 59.800 61.111 0.00 0.00 0.00 2.83
814 816 2.065993 TCTTCAACTCGGCTCTTTCG 57.934 50.000 0.00 0.00 0.00 3.46
819 821 1.721926 CAACTCGGCTCTTTCGTTCTC 59.278 52.381 0.00 0.00 0.00 2.87
821 823 1.340248 ACTCGGCTCTTTCGTTCTCAA 59.660 47.619 0.00 0.00 0.00 3.02
823 825 1.340248 TCGGCTCTTTCGTTCTCAAGT 59.660 47.619 0.00 0.00 0.00 3.16
824 826 1.721926 CGGCTCTTTCGTTCTCAAGTC 59.278 52.381 0.00 0.00 0.00 3.01
825 827 2.755650 GGCTCTTTCGTTCTCAAGTCA 58.244 47.619 0.00 0.00 0.00 3.41
826 828 2.734079 GGCTCTTTCGTTCTCAAGTCAG 59.266 50.000 0.00 0.00 0.00 3.51
828 830 2.734079 CTCTTTCGTTCTCAAGTCAGCC 59.266 50.000 0.00 0.00 0.00 4.85
829 831 2.102420 TCTTTCGTTCTCAAGTCAGCCA 59.898 45.455 0.00 0.00 0.00 4.75
830 832 1.865865 TTCGTTCTCAAGTCAGCCAC 58.134 50.000 0.00 0.00 0.00 5.01
831 833 0.318699 TCGTTCTCAAGTCAGCCACG 60.319 55.000 0.00 0.00 0.00 4.94
832 834 1.862806 GTTCTCAAGTCAGCCACGC 59.137 57.895 0.00 0.00 0.00 5.34
833 835 0.880278 GTTCTCAAGTCAGCCACGCA 60.880 55.000 0.00 0.00 0.00 5.24
838 840 4.694233 AGTCAGCCACGCAGCAGG 62.694 66.667 0.00 0.00 34.23 4.85
867 869 0.666374 CCGCTTCACCCGTTTCTTTT 59.334 50.000 0.00 0.00 0.00 2.27
1363 1625 4.979204 CGCAGGTCGTCAAGGTAA 57.021 55.556 0.00 0.00 0.00 2.85
1377 1639 5.446899 CGTCAAGGTAACGATTTTAATTCGC 59.553 40.000 8.83 0.00 42.62 4.70
1506 1781 3.466836 TGAACTCTGAGTTTTGCATCGT 58.533 40.909 22.80 0.00 38.80 3.73
1553 1829 5.584253 ATCAGAGCGAACTACACTGTAAT 57.416 39.130 0.00 0.00 0.00 1.89
1587 1863 8.539674 TCGTAATTGACATGATTAATCTTGACG 58.460 33.333 28.60 24.86 36.26 4.35
1660 1936 4.876107 GTGGAATCAGAACATCATACGGTT 59.124 41.667 0.00 0.00 0.00 4.44
1813 2099 7.744087 TCTGTATTTTGCATACACTCAAGTT 57.256 32.000 0.00 0.00 31.86 2.66
1824 2110 3.944087 ACACTCAAGTTCAGATTAGGGC 58.056 45.455 0.00 0.00 0.00 5.19
1858 2144 5.385198 TCCAGAGAGCTTAATTTGTTGGTT 58.615 37.500 0.00 0.00 0.00 3.67
1895 2181 8.609176 CAATTCATCTTCATGCCTTTATTTTGG 58.391 33.333 0.00 0.00 0.00 3.28
1928 2214 7.624360 TCGTTAATTTTCATTGGATAGCAGT 57.376 32.000 0.00 0.00 0.00 4.40
2111 2398 3.493699 GCTGTACTTATCGGCCCATACAA 60.494 47.826 0.00 0.00 0.00 2.41
2112 2399 4.056050 CTGTACTTATCGGCCCATACAAC 58.944 47.826 0.00 0.00 0.00 3.32
2327 2618 7.404671 AAAATTGGACAGTGAACACTAGTTT 57.595 32.000 7.15 1.56 40.20 2.66
2367 2658 6.406370 CATGGTTTAGTATGTTCCTCAGTCA 58.594 40.000 0.00 0.00 0.00 3.41
2556 2848 1.073923 ACTGGTTTACAAGCCCCTCTG 59.926 52.381 0.00 0.00 0.00 3.35
2591 2883 6.400568 CCTAACTTTGACCACCGATTTAGTA 58.599 40.000 0.00 0.00 0.00 1.82
2816 3108 2.667969 GGAAATTGCATTTGCTCGAACC 59.332 45.455 3.94 0.00 42.66 3.62
3013 3306 3.337909 ACTTTTGATTGAATCCCCCTCCT 59.662 43.478 2.26 0.00 0.00 3.69
3036 3329 1.542472 CCCCCACCGTTTGATGTTTAC 59.458 52.381 0.00 0.00 0.00 2.01
3138 3431 8.632679 TGCTTCACATTTTCAAGTATTTCTCTT 58.367 29.630 0.00 0.00 0.00 2.85
3298 3617 1.035139 ATGCCGGATTTTCCATGAGC 58.965 50.000 5.05 0.00 35.91 4.26
3303 3622 3.743521 CCGGATTTTCCATGAGCTGATA 58.256 45.455 0.00 0.00 35.91 2.15
3332 3651 6.400568 CCACAATCTGGAAACATAGCAAAAT 58.599 36.000 0.00 0.00 43.95 1.82
3350 3669 7.678837 AGCAAAATTTGTCCCAATTTGAGATA 58.321 30.769 7.60 0.00 33.86 1.98
3405 3736 4.991056 TCTGTCTGAAAACTTCTGATTCGG 59.009 41.667 0.21 0.00 39.36 4.30
3575 3907 1.614525 TGCTCTGAGGGACTGGCAT 60.615 57.895 6.83 0.00 41.55 4.40
3608 3940 3.953612 AGTGGAAAGCACAAAGATTGACA 59.046 39.130 0.00 0.00 0.00 3.58
3790 4122 8.517878 ACTCAACAAATTCAAGTTATGGAGATG 58.482 33.333 0.00 0.00 0.00 2.90
3881 4213 4.883585 TGATGCACTTGAGTTGAGTTTTCT 59.116 37.500 0.00 0.00 0.00 2.52
3917 4249 2.805099 GCTGCATCAAGTATGTCTAGCC 59.195 50.000 0.00 0.00 37.93 3.93
3999 4331 0.034767 CAGGATCTCAGCCAAAGCCA 60.035 55.000 0.00 0.00 41.25 4.75
4088 4420 3.502191 TTTTCTCAACTTGGTGTGTGC 57.498 42.857 0.00 0.00 0.00 4.57
4110 4442 2.843701 CTCTGCTCACCAACTTGTTCT 58.156 47.619 0.00 0.00 0.00 3.01
4236 4568 0.529378 CTCCAGCACTTGATTTGCCC 59.471 55.000 0.00 0.00 41.18 5.36
4310 4657 6.423776 AATTGTTTGATGAGATGGGTTTGT 57.576 33.333 0.00 0.00 0.00 2.83
4342 4689 7.134815 CAGACATTTGTGTAGCATAATAAGGC 58.865 38.462 0.00 0.00 0.00 4.35
4414 4761 0.735632 GAGCTGCGAAGTGGTGAGAG 60.736 60.000 0.00 0.00 0.00 3.20
4415 4762 1.739562 GCTGCGAAGTGGTGAGAGG 60.740 63.158 0.00 0.00 0.00 3.69
4416 4763 1.739562 CTGCGAAGTGGTGAGAGGC 60.740 63.158 0.00 0.00 0.00 4.70
4417 4764 2.811317 GCGAAGTGGTGAGAGGCG 60.811 66.667 0.00 0.00 0.00 5.52
4418 4765 2.651361 CGAAGTGGTGAGAGGCGT 59.349 61.111 0.00 0.00 0.00 5.68
4442 4789 1.371558 GTGTCCGTGGAAGGAGCTT 59.628 57.895 0.00 0.00 41.68 3.74
4444 4791 1.001633 GTGTCCGTGGAAGGAGCTTAA 59.998 52.381 0.00 0.00 41.68 1.85
4445 4792 1.906574 TGTCCGTGGAAGGAGCTTAAT 59.093 47.619 0.00 0.00 41.68 1.40
4446 4793 3.101437 TGTCCGTGGAAGGAGCTTAATA 58.899 45.455 0.00 0.00 41.68 0.98
4447 4794 3.132289 TGTCCGTGGAAGGAGCTTAATAG 59.868 47.826 0.00 0.00 41.68 1.73
4449 4796 3.773119 TCCGTGGAAGGAGCTTAATAGTT 59.227 43.478 0.00 0.00 34.92 2.24
4450 4797 4.957954 TCCGTGGAAGGAGCTTAATAGTTA 59.042 41.667 0.00 0.00 34.92 2.24
4512 4859 2.361610 CATTTGGCCAGCCGAGGT 60.362 61.111 5.11 0.00 39.42 3.85
4601 5073 2.916716 GTCATGCTAAAATTGCACACCG 59.083 45.455 0.00 0.00 43.59 4.94
4624 5096 4.632688 GCTTTGCCAAATTGTCATGCTAAT 59.367 37.500 0.00 0.00 0.00 1.73
4625 5097 5.811613 GCTTTGCCAAATTGTCATGCTAATA 59.188 36.000 0.00 0.00 0.00 0.98
4626 5098 6.313411 GCTTTGCCAAATTGTCATGCTAATAA 59.687 34.615 0.00 0.00 0.00 1.40
4647 5119 8.934023 AATAAAAAGGACTATGAACTTCCACA 57.066 30.769 0.00 0.00 0.00 4.17
4667 5139 5.185454 CACATGCCTTGTTTGAGGTATAGA 58.815 41.667 0.00 0.00 39.72 1.98
4695 5167 2.290832 TGCCAGCTCATGACCAAATGTA 60.291 45.455 0.00 0.00 0.00 2.29
4704 5176 5.320277 TCATGACCAAATGTATGTGGACAA 58.680 37.500 8.06 0.00 41.68 3.18
4708 5180 2.495669 CCAAATGTATGTGGACAACCCC 59.504 50.000 0.00 0.00 37.03 4.95
4709 5181 3.161067 CAAATGTATGTGGACAACCCCA 58.839 45.455 0.00 0.00 31.83 4.96
4710 5182 3.534357 AATGTATGTGGACAACCCCAA 57.466 42.857 0.00 0.00 38.06 4.12
4717 5189 3.850752 TGTGGACAACCCCAAACATATT 58.149 40.909 0.00 0.00 38.06 1.28
4719 5191 3.194755 GTGGACAACCCCAAACATATTCC 59.805 47.826 0.00 0.00 38.06 3.01
4753 5225 3.460103 GTCTTGTTTGGTGAACCGTAGA 58.540 45.455 0.00 0.00 39.43 2.59
4808 5280 5.470098 ACGCATTTTGTCTGTTTAGATCTGT 59.530 36.000 5.18 0.00 34.94 3.41
4834 5306 2.030007 ACAGAAATCACAACCCAATGCG 60.030 45.455 0.00 0.00 0.00 4.73
4836 5308 0.678395 AAATCACAACCCAATGCGCA 59.322 45.000 14.96 14.96 0.00 6.09
4845 5317 1.472480 ACCCAATGCGCAGACATAAAC 59.528 47.619 18.32 0.00 0.00 2.01
4846 5318 1.472082 CCCAATGCGCAGACATAAACA 59.528 47.619 18.32 0.00 0.00 2.83
4890 5363 0.831711 AACCGCCTCAAATTTGGGCT 60.832 50.000 30.90 19.73 40.27 5.19
4912 5385 1.599419 GGTTTGCATCCACACGAACAC 60.599 52.381 0.00 0.00 32.72 3.32
4918 5391 2.734175 GCATCCACACGAACACGAGATA 60.734 50.000 0.00 0.00 0.00 1.98
4919 5392 2.913777 TCCACACGAACACGAGATAG 57.086 50.000 0.00 0.00 0.00 2.08
4920 5393 2.429478 TCCACACGAACACGAGATAGA 58.571 47.619 0.00 0.00 0.00 1.98
4922 5395 2.095415 CCACACGAACACGAGATAGACA 60.095 50.000 0.00 0.00 0.00 3.41
4924 5397 2.551032 ACACGAACACGAGATAGACACA 59.449 45.455 0.00 0.00 0.00 3.72
4931 5404 1.138883 GAGATAGACACACCGCGCA 59.861 57.895 8.75 0.00 0.00 6.09
4967 5440 3.206964 GCCCTACAGTCCTTTTAGATGC 58.793 50.000 0.00 0.00 0.00 3.91
4970 5443 1.359848 ACAGTCCTTTTAGATGCGCG 58.640 50.000 0.00 0.00 0.00 6.86
4971 5444 0.026803 CAGTCCTTTTAGATGCGCGC 59.973 55.000 27.26 27.26 0.00 6.86
4973 5446 2.351210 CCTTTTAGATGCGCGCGC 60.351 61.111 45.02 45.02 42.35 6.86
5007 5480 1.775385 CCCACTCTTCTCCCTCTCTC 58.225 60.000 0.00 0.00 0.00 3.20
5017 5490 2.674220 CCCTCTCTCTGCCCCCAAC 61.674 68.421 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.714798 ACTTTTGGAAGTGAGGGTGACTA 59.285 43.478 0.00 0.00 44.27 2.59
10 11 2.422945 GGTGACTTTTGGAAGTGAGGGT 60.423 50.000 0.00 0.00 45.88 4.34
76 77 2.365105 CCGAGGGCTTGGGGTCTA 60.365 66.667 0.00 0.00 0.00 2.59
166 167 3.489229 GCGGAACATGAAAATAAGAGGCC 60.489 47.826 0.00 0.00 0.00 5.19
168 169 4.963276 TGCGGAACATGAAAATAAGAGG 57.037 40.909 0.00 0.00 0.00 3.69
170 171 5.192927 AGGATGCGGAACATGAAAATAAGA 58.807 37.500 0.00 0.00 39.84 2.10
171 172 5.505173 AGGATGCGGAACATGAAAATAAG 57.495 39.130 0.00 0.00 39.84 1.73
172 173 5.913137 AAGGATGCGGAACATGAAAATAA 57.087 34.783 0.00 0.00 39.84 1.40
173 174 7.338196 TCTTTAAGGATGCGGAACATGAAAATA 59.662 33.333 0.00 0.00 39.84 1.40
180 182 2.936498 CGTCTTTAAGGATGCGGAACAT 59.064 45.455 0.00 0.00 43.54 2.71
241 243 1.070134 AGCTAGTTTGACTGAACGGCA 59.930 47.619 0.00 0.00 36.42 5.69
279 281 1.071471 CGTATCCCCTGGTGATGGC 59.929 63.158 1.58 0.00 0.00 4.40
285 287 1.233369 CTCCTCCGTATCCCCTGGT 59.767 63.158 0.00 0.00 0.00 4.00
307 309 0.465097 CAACTGGGCCCTCATAGCAG 60.465 60.000 25.70 12.77 0.00 4.24
312 314 3.628646 GACGCAACTGGGCCCTCAT 62.629 63.158 25.70 5.07 0.00 2.90
317 319 3.628646 ATGAGGACGCAACTGGGCC 62.629 63.158 0.00 0.00 0.00 5.80
336 338 4.933064 GAGGCGACGATCCCAGCG 62.933 72.222 0.00 0.00 0.00 5.18
338 340 1.961180 AAAGGAGGCGACGATCCCAG 61.961 60.000 14.00 0.00 36.14 4.45
340 342 1.521681 CAAAGGAGGCGACGATCCC 60.522 63.158 14.00 4.24 36.14 3.85
344 346 2.342279 CACCAAAGGAGGCGACGA 59.658 61.111 0.00 0.00 0.00 4.20
345 347 3.423154 GCACCAAAGGAGGCGACG 61.423 66.667 0.00 0.00 0.00 5.12
346 348 3.056328 GGCACCAAAGGAGGCGAC 61.056 66.667 0.00 0.00 0.00 5.19
381 383 2.027625 GAAGACACAGGGAACGGCG 61.028 63.158 4.80 4.80 0.00 6.46
389 391 1.469251 CGACGGGTATGAAGACACAGG 60.469 57.143 0.00 0.00 0.00 4.00
412 414 2.036098 TACTCCTGGGACGGCGAA 59.964 61.111 16.62 0.00 0.00 4.70
413 415 2.439701 CTACTCCTGGGACGGCGA 60.440 66.667 16.62 0.00 0.00 5.54
447 449 3.168237 GAATGATGGAACGGCGGCG 62.168 63.158 31.06 31.06 0.00 6.46
452 454 3.397482 GAGAGGATGAATGATGGAACGG 58.603 50.000 0.00 0.00 0.00 4.44
455 457 2.224378 GCGGAGAGGATGAATGATGGAA 60.224 50.000 0.00 0.00 0.00 3.53
459 461 1.427809 TGGCGGAGAGGATGAATGAT 58.572 50.000 0.00 0.00 0.00 2.45
462 464 1.071385 GACATGGCGGAGAGGATGAAT 59.929 52.381 0.00 0.00 0.00 2.57
466 468 1.074926 AGGACATGGCGGAGAGGAT 60.075 57.895 0.00 0.00 0.00 3.24
469 471 2.801631 GGGAGGACATGGCGGAGAG 61.802 68.421 0.00 0.00 0.00 3.20
488 490 1.071385 AGTGTTGCTCTCCTTCTGGTG 59.929 52.381 0.00 0.00 34.23 4.17
489 491 1.346068 GAGTGTTGCTCTCCTTCTGGT 59.654 52.381 0.00 0.00 40.98 4.00
490 492 1.338579 GGAGTGTTGCTCTCCTTCTGG 60.339 57.143 9.28 0.00 45.56 3.86
491 493 1.671261 CGGAGTGTTGCTCTCCTTCTG 60.671 57.143 13.24 0.00 46.49 3.02
492 494 0.605589 CGGAGTGTTGCTCTCCTTCT 59.394 55.000 13.24 0.00 46.49 2.85
493 495 0.603569 TCGGAGTGTTGCTCTCCTTC 59.396 55.000 13.24 0.00 46.49 3.46
494 496 0.318762 GTCGGAGTGTTGCTCTCCTT 59.681 55.000 13.24 0.00 46.49 3.36
495 497 1.536943 GGTCGGAGTGTTGCTCTCCT 61.537 60.000 13.24 0.00 46.49 3.69
496 498 1.079750 GGTCGGAGTGTTGCTCTCC 60.080 63.158 7.06 7.06 45.56 3.71
497 499 1.079750 GGGTCGGAGTGTTGCTCTC 60.080 63.158 0.00 0.00 43.62 3.20
498 500 2.932234 CGGGTCGGAGTGTTGCTCT 61.932 63.158 0.00 0.00 43.62 4.09
499 501 2.432628 CGGGTCGGAGTGTTGCTC 60.433 66.667 0.00 0.00 43.39 4.26
500 502 4.681978 GCGGGTCGGAGTGTTGCT 62.682 66.667 0.00 0.00 0.00 3.91
501 503 4.980805 TGCGGGTCGGAGTGTTGC 62.981 66.667 0.00 0.00 0.00 4.17
502 504 3.041940 GTGCGGGTCGGAGTGTTG 61.042 66.667 0.00 0.00 0.00 3.33
503 505 4.657824 CGTGCGGGTCGGAGTGTT 62.658 66.667 0.00 0.00 0.00 3.32
505 507 3.271706 TTACGTGCGGGTCGGAGTG 62.272 63.158 0.00 0.00 0.00 3.51
506 508 2.985282 TTACGTGCGGGTCGGAGT 60.985 61.111 0.00 0.00 0.00 3.85
507 509 2.202570 CTTACGTGCGGGTCGGAG 60.203 66.667 0.00 0.00 0.00 4.63
508 510 3.751246 CCTTACGTGCGGGTCGGA 61.751 66.667 0.00 0.00 0.00 4.55
509 511 2.567564 ATTCCTTACGTGCGGGTCGG 62.568 60.000 0.00 0.00 0.00 4.79
510 512 1.143969 GATTCCTTACGTGCGGGTCG 61.144 60.000 0.00 0.00 0.00 4.79
511 513 1.143969 CGATTCCTTACGTGCGGGTC 61.144 60.000 0.00 0.35 0.00 4.46
512 514 1.153706 CGATTCCTTACGTGCGGGT 60.154 57.895 0.00 0.00 0.00 5.28
513 515 2.522638 GCGATTCCTTACGTGCGGG 61.523 63.158 0.00 0.00 0.00 6.13
514 516 2.522638 GGCGATTCCTTACGTGCGG 61.523 63.158 0.00 0.00 0.00 5.69
515 517 2.856346 CGGCGATTCCTTACGTGCG 61.856 63.158 0.00 0.00 0.00 5.34
516 518 3.003478 CGGCGATTCCTTACGTGC 58.997 61.111 0.00 0.00 0.00 5.34
517 519 2.522638 GGCGGCGATTCCTTACGTG 61.523 63.158 12.98 0.00 0.00 4.49
518 520 2.202837 GGCGGCGATTCCTTACGT 60.203 61.111 12.98 0.00 0.00 3.57
519 521 3.327754 CGGCGGCGATTCCTTACG 61.328 66.667 29.19 0.00 0.00 3.18
520 522 1.282930 GATCGGCGGCGATTCCTTAC 61.283 60.000 41.32 26.36 0.00 2.34
521 523 1.006571 GATCGGCGGCGATTCCTTA 60.007 57.895 41.32 18.37 0.00 2.69
522 524 2.280186 GATCGGCGGCGATTCCTT 60.280 61.111 41.32 24.99 0.00 3.36
523 525 4.301027 GGATCGGCGGCGATTCCT 62.301 66.667 41.32 25.38 0.00 3.36
525 527 4.301027 AGGGATCGGCGGCGATTC 62.301 66.667 41.32 39.16 0.00 2.52
526 528 4.301027 GAGGGATCGGCGGCGATT 62.301 66.667 41.32 29.08 0.00 3.34
546 548 1.226717 GTGAGGATCTCGACGGCAC 60.227 63.158 0.00 0.00 34.92 5.01
547 549 2.415608 GGTGAGGATCTCGACGGCA 61.416 63.158 0.00 0.00 34.92 5.69
548 550 2.413765 GGTGAGGATCTCGACGGC 59.586 66.667 0.00 0.00 34.92 5.68
549 551 2.716244 CGGTGAGGATCTCGACGG 59.284 66.667 0.00 0.00 35.27 4.79
550 552 2.024871 GCGGTGAGGATCTCGACG 59.975 66.667 0.00 0.00 35.27 5.12
551 553 2.413765 GGCGGTGAGGATCTCGAC 59.586 66.667 0.00 0.00 35.27 4.20
552 554 2.044352 TGGCGGTGAGGATCTCGA 60.044 61.111 0.00 0.00 35.27 4.04
553 555 2.105128 GTGGCGGTGAGGATCTCG 59.895 66.667 0.00 0.00 36.07 4.04
554 556 2.501610 GGTGGCGGTGAGGATCTC 59.498 66.667 0.00 0.00 34.92 2.75
555 557 3.461773 CGGTGGCGGTGAGGATCT 61.462 66.667 0.00 0.00 34.92 2.75
566 568 4.700365 GGTTTTGCGAGCGGTGGC 62.700 66.667 15.09 15.09 40.37 5.01
567 569 4.038080 GGGTTTTGCGAGCGGTGG 62.038 66.667 0.00 0.00 0.00 4.61
568 570 1.231958 TTAGGGTTTTGCGAGCGGTG 61.232 55.000 0.00 0.00 0.00 4.94
569 571 1.071814 TTAGGGTTTTGCGAGCGGT 59.928 52.632 0.00 0.00 0.00 5.68
570 572 1.500396 GTTAGGGTTTTGCGAGCGG 59.500 57.895 0.00 0.00 0.00 5.52
571 573 1.500396 GGTTAGGGTTTTGCGAGCG 59.500 57.895 0.00 0.00 0.00 5.03
572 574 0.608308 AGGGTTAGGGTTTTGCGAGC 60.608 55.000 0.00 0.00 0.00 5.03
573 575 2.629051 CTAGGGTTAGGGTTTTGCGAG 58.371 52.381 0.00 0.00 0.00 5.03
574 576 1.339342 GCTAGGGTTAGGGTTTTGCGA 60.339 52.381 0.00 0.00 0.00 5.10
575 577 1.092348 GCTAGGGTTAGGGTTTTGCG 58.908 55.000 0.00 0.00 0.00 4.85
576 578 1.092348 CGCTAGGGTTAGGGTTTTGC 58.908 55.000 0.00 0.00 35.67 3.68
577 579 1.092348 GCGCTAGGGTTAGGGTTTTG 58.908 55.000 8.77 0.00 40.82 2.44
578 580 0.989602 AGCGCTAGGGTTAGGGTTTT 59.010 50.000 8.99 0.00 40.82 2.43
579 581 0.989602 AAGCGCTAGGGTTAGGGTTT 59.010 50.000 12.05 0.00 40.82 3.27
580 582 0.252197 CAAGCGCTAGGGTTAGGGTT 59.748 55.000 12.05 0.00 40.82 4.11
581 583 0.616679 TCAAGCGCTAGGGTTAGGGT 60.617 55.000 12.05 0.00 40.82 4.34
582 584 0.105039 CTCAAGCGCTAGGGTTAGGG 59.895 60.000 12.05 0.00 41.44 3.53
583 585 0.530870 GCTCAAGCGCTAGGGTTAGG 60.531 60.000 12.05 0.00 34.33 2.69
584 586 0.530870 GGCTCAAGCGCTAGGGTTAG 60.531 60.000 12.05 3.21 43.26 2.34
585 587 1.520666 GGCTCAAGCGCTAGGGTTA 59.479 57.895 12.05 0.00 43.26 2.85
586 588 2.269241 GGCTCAAGCGCTAGGGTT 59.731 61.111 12.05 0.00 43.26 4.11
587 589 4.148825 CGGCTCAAGCGCTAGGGT 62.149 66.667 12.05 0.00 43.26 4.34
588 590 3.157217 ATCGGCTCAAGCGCTAGGG 62.157 63.158 12.05 3.39 43.26 3.53
589 591 1.663074 GATCGGCTCAAGCGCTAGG 60.663 63.158 12.05 6.49 43.26 3.02
590 592 2.013483 CGATCGGCTCAAGCGCTAG 61.013 63.158 12.05 6.58 43.26 3.42
591 593 2.026157 CGATCGGCTCAAGCGCTA 59.974 61.111 12.05 0.00 43.26 4.26
613 615 0.880278 TAGGCGATTGAGGCGATTGC 60.880 55.000 0.00 0.00 41.99 3.56
614 616 1.728971 GATAGGCGATTGAGGCGATTG 59.271 52.381 0.00 0.00 41.99 2.67
615 617 1.338200 GGATAGGCGATTGAGGCGATT 60.338 52.381 0.00 0.00 41.99 3.34
616 618 0.247736 GGATAGGCGATTGAGGCGAT 59.752 55.000 0.00 0.00 41.99 4.58
617 619 1.666011 GGATAGGCGATTGAGGCGA 59.334 57.895 0.00 0.00 41.99 5.54
618 620 1.734477 CGGATAGGCGATTGAGGCG 60.734 63.158 0.00 0.00 41.99 5.52
619 621 0.946221 CACGGATAGGCGATTGAGGC 60.946 60.000 0.00 0.00 0.00 4.70
620 622 0.389391 ACACGGATAGGCGATTGAGG 59.611 55.000 0.00 0.00 0.00 3.86
621 623 2.225068 AACACGGATAGGCGATTGAG 57.775 50.000 0.00 0.00 0.00 3.02
622 624 2.684001 AAACACGGATAGGCGATTGA 57.316 45.000 0.00 0.00 0.00 2.57
623 625 4.272504 ACATAAAACACGGATAGGCGATTG 59.727 41.667 0.00 0.00 0.00 2.67
624 626 4.272504 CACATAAAACACGGATAGGCGATT 59.727 41.667 0.00 0.00 0.00 3.34
625 627 3.807622 CACATAAAACACGGATAGGCGAT 59.192 43.478 0.00 0.00 0.00 4.58
626 628 3.191669 CACATAAAACACGGATAGGCGA 58.808 45.455 0.00 0.00 0.00 5.54
627 629 2.286184 GCACATAAAACACGGATAGGCG 60.286 50.000 0.00 0.00 0.00 5.52
628 630 2.286184 CGCACATAAAACACGGATAGGC 60.286 50.000 0.00 0.00 0.00 3.93
629 631 3.191669 TCGCACATAAAACACGGATAGG 58.808 45.455 0.00 0.00 0.00 2.57
630 632 3.245284 CCTCGCACATAAAACACGGATAG 59.755 47.826 0.00 0.00 0.00 2.08
631 633 3.191669 CCTCGCACATAAAACACGGATA 58.808 45.455 0.00 0.00 0.00 2.59
632 634 2.006888 CCTCGCACATAAAACACGGAT 58.993 47.619 0.00 0.00 0.00 4.18
633 635 1.270412 ACCTCGCACATAAAACACGGA 60.270 47.619 0.00 0.00 0.00 4.69
634 636 1.136085 CACCTCGCACATAAAACACGG 60.136 52.381 0.00 0.00 0.00 4.94
635 637 1.136085 CCACCTCGCACATAAAACACG 60.136 52.381 0.00 0.00 0.00 4.49
636 638 2.095919 GTCCACCTCGCACATAAAACAC 60.096 50.000 0.00 0.00 0.00 3.32
637 639 2.147958 GTCCACCTCGCACATAAAACA 58.852 47.619 0.00 0.00 0.00 2.83
638 640 1.467342 GGTCCACCTCGCACATAAAAC 59.533 52.381 0.00 0.00 0.00 2.43
639 641 1.612199 GGGTCCACCTCGCACATAAAA 60.612 52.381 0.00 0.00 35.85 1.52
640 642 0.035820 GGGTCCACCTCGCACATAAA 60.036 55.000 0.00 0.00 35.85 1.40
641 643 1.600107 GGGTCCACCTCGCACATAA 59.400 57.895 0.00 0.00 35.85 1.90
642 644 3.305314 GGGTCCACCTCGCACATA 58.695 61.111 0.00 0.00 35.85 2.29
651 653 3.647771 GTGTCCCCAGGGTCCACC 61.648 72.222 4.22 0.00 40.67 4.61
652 654 4.016706 CGTGTCCCCAGGGTCCAC 62.017 72.222 4.22 9.61 36.02 4.02
653 655 4.567597 ACGTGTCCCCAGGGTCCA 62.568 66.667 4.22 0.00 36.47 4.02
654 656 4.016706 CACGTGTCCCCAGGGTCC 62.017 72.222 7.58 0.00 36.47 4.46
655 657 1.474332 TAACACGTGTCCCCAGGGTC 61.474 60.000 23.61 0.00 36.47 4.46
656 658 1.055551 TTAACACGTGTCCCCAGGGT 61.056 55.000 23.61 6.04 36.47 4.34
657 659 0.326927 ATTAACACGTGTCCCCAGGG 59.673 55.000 23.61 0.00 0.00 4.45
658 660 1.734163 GATTAACACGTGTCCCCAGG 58.266 55.000 23.61 0.00 0.00 4.45
659 661 1.067425 TCGATTAACACGTGTCCCCAG 60.067 52.381 23.61 13.69 0.00 4.45
660 662 0.967662 TCGATTAACACGTGTCCCCA 59.032 50.000 23.61 6.59 0.00 4.96
661 663 1.337074 TGTCGATTAACACGTGTCCCC 60.337 52.381 23.61 10.59 0.00 4.81
662 664 1.990563 CTGTCGATTAACACGTGTCCC 59.009 52.381 23.61 10.24 0.00 4.46
663 665 2.915463 CTCTGTCGATTAACACGTGTCC 59.085 50.000 23.61 10.59 0.00 4.02
664 666 2.915463 CCTCTGTCGATTAACACGTGTC 59.085 50.000 23.61 8.44 0.00 3.67
665 667 2.295349 ACCTCTGTCGATTAACACGTGT 59.705 45.455 17.22 17.22 0.00 4.49
666 668 2.661675 CACCTCTGTCGATTAACACGTG 59.338 50.000 15.48 15.48 0.00 4.49
667 669 2.352421 CCACCTCTGTCGATTAACACGT 60.352 50.000 0.00 0.00 0.00 4.49
668 670 2.259618 CCACCTCTGTCGATTAACACG 58.740 52.381 0.00 0.00 0.00 4.49
669 671 3.314541 ACCACCTCTGTCGATTAACAC 57.685 47.619 0.00 0.00 0.00 3.32
670 672 4.062293 CAAACCACCTCTGTCGATTAACA 58.938 43.478 0.00 0.00 0.00 2.41
671 673 3.120304 GCAAACCACCTCTGTCGATTAAC 60.120 47.826 0.00 0.00 0.00 2.01
672 674 3.071479 GCAAACCACCTCTGTCGATTAA 58.929 45.455 0.00 0.00 0.00 1.40
673 675 2.695359 GCAAACCACCTCTGTCGATTA 58.305 47.619 0.00 0.00 0.00 1.75
674 676 1.523758 GCAAACCACCTCTGTCGATT 58.476 50.000 0.00 0.00 0.00 3.34
675 677 0.670546 CGCAAACCACCTCTGTCGAT 60.671 55.000 0.00 0.00 0.00 3.59
676 678 1.300620 CGCAAACCACCTCTGTCGA 60.301 57.895 0.00 0.00 0.00 4.20
677 679 2.317609 CCGCAAACCACCTCTGTCG 61.318 63.158 0.00 0.00 0.00 4.35
678 680 0.951040 CTCCGCAAACCACCTCTGTC 60.951 60.000 0.00 0.00 0.00 3.51
679 681 1.071471 CTCCGCAAACCACCTCTGT 59.929 57.895 0.00 0.00 0.00 3.41
680 682 0.951040 GTCTCCGCAAACCACCTCTG 60.951 60.000 0.00 0.00 0.00 3.35
681 683 1.371558 GTCTCCGCAAACCACCTCT 59.628 57.895 0.00 0.00 0.00 3.69
682 684 2.027625 CGTCTCCGCAAACCACCTC 61.028 63.158 0.00 0.00 0.00 3.85
683 685 2.030562 CGTCTCCGCAAACCACCT 59.969 61.111 0.00 0.00 0.00 4.00
684 686 2.027625 CTCGTCTCCGCAAACCACC 61.028 63.158 0.00 0.00 0.00 4.61
685 687 0.599204 TTCTCGTCTCCGCAAACCAC 60.599 55.000 0.00 0.00 0.00 4.16
686 688 0.105224 TTTCTCGTCTCCGCAAACCA 59.895 50.000 0.00 0.00 0.00 3.67
687 689 1.393883 GATTTCTCGTCTCCGCAAACC 59.606 52.381 0.00 0.00 0.00 3.27
688 690 2.066262 TGATTTCTCGTCTCCGCAAAC 58.934 47.619 0.00 0.00 0.00 2.93
689 691 2.448926 TGATTTCTCGTCTCCGCAAA 57.551 45.000 0.00 0.00 0.00 3.68
690 692 2.540515 GATGATTTCTCGTCTCCGCAA 58.459 47.619 0.00 0.00 35.00 4.85
691 693 1.202417 GGATGATTTCTCGTCTCCGCA 60.202 52.381 0.00 0.00 37.53 5.69
692 694 1.492720 GGATGATTTCTCGTCTCCGC 58.507 55.000 0.00 0.00 37.53 5.54
693 695 1.600663 CCGGATGATTTCTCGTCTCCG 60.601 57.143 0.00 1.95 37.53 4.63
694 696 1.409427 ACCGGATGATTTCTCGTCTCC 59.591 52.381 9.46 0.00 37.53 3.71
695 697 2.873133 ACCGGATGATTTCTCGTCTC 57.127 50.000 9.46 0.00 37.53 3.36
696 698 3.552875 TCTACCGGATGATTTCTCGTCT 58.447 45.455 9.46 0.00 37.53 4.18
697 699 3.984508 TCTACCGGATGATTTCTCGTC 57.015 47.619 9.46 0.00 36.79 4.20
698 700 4.939052 AATCTACCGGATGATTTCTCGT 57.061 40.909 9.46 0.00 34.45 4.18
699 701 7.709269 TTAAAATCTACCGGATGATTTCTCG 57.291 36.000 26.56 0.00 40.64 4.04
700 702 8.889717 TGTTTAAAATCTACCGGATGATTTCTC 58.110 33.333 26.56 19.74 40.64 2.87
701 703 8.801882 TGTTTAAAATCTACCGGATGATTTCT 57.198 30.769 26.56 20.88 40.64 2.52
706 708 8.463607 GGAAAATGTTTAAAATCTACCGGATGA 58.536 33.333 9.46 5.96 34.45 2.92
707 709 8.466798 AGGAAAATGTTTAAAATCTACCGGATG 58.533 33.333 9.46 0.00 34.45 3.51
708 710 8.589701 AGGAAAATGTTTAAAATCTACCGGAT 57.410 30.769 9.46 0.00 35.97 4.18
709 711 8.411991 AAGGAAAATGTTTAAAATCTACCGGA 57.588 30.769 9.46 0.00 0.00 5.14
710 712 8.520351 AGAAGGAAAATGTTTAAAATCTACCGG 58.480 33.333 0.00 0.00 0.00 5.28
711 713 9.908152 AAGAAGGAAAATGTTTAAAATCTACCG 57.092 29.630 0.00 0.00 0.00 4.02
723 725 8.515414 CGATCCTCTAAAAAGAAGGAAAATGTT 58.485 33.333 0.00 0.00 31.92 2.71
724 726 7.883311 TCGATCCTCTAAAAAGAAGGAAAATGT 59.117 33.333 0.00 0.00 31.92 2.71
725 727 8.268850 TCGATCCTCTAAAAAGAAGGAAAATG 57.731 34.615 0.00 0.00 31.92 2.32
726 728 8.322091 TCTCGATCCTCTAAAAAGAAGGAAAAT 58.678 33.333 0.00 0.00 31.92 1.82
727 729 7.676947 TCTCGATCCTCTAAAAAGAAGGAAAA 58.323 34.615 0.00 0.00 31.92 2.29
728 730 7.178628 TCTCTCGATCCTCTAAAAAGAAGGAAA 59.821 37.037 0.00 0.00 31.92 3.13
729 731 6.663953 TCTCTCGATCCTCTAAAAAGAAGGAA 59.336 38.462 0.00 0.00 31.92 3.36
730 732 6.188407 TCTCTCGATCCTCTAAAAAGAAGGA 58.812 40.000 0.00 0.00 0.00 3.36
731 733 6.458232 TCTCTCGATCCTCTAAAAAGAAGG 57.542 41.667 0.00 0.00 0.00 3.46
735 737 4.038642 CCCCTCTCTCGATCCTCTAAAAAG 59.961 50.000 0.00 0.00 0.00 2.27
743 745 1.231641 CACCCCCTCTCTCGATCCT 59.768 63.158 0.00 0.00 0.00 3.24
752 754 2.371897 CTTGTTTGCCCACCCCCTCT 62.372 60.000 0.00 0.00 0.00 3.69
759 761 2.355009 CGCTGCTTGTTTGCCCAC 60.355 61.111 0.00 0.00 0.00 4.61
814 816 0.880278 TGCGTGGCTGACTTGAGAAC 60.880 55.000 0.00 0.00 0.00 3.01
819 821 2.962827 CTGCTGCGTGGCTGACTTG 61.963 63.158 0.00 0.00 33.89 3.16
821 823 4.694233 CCTGCTGCGTGGCTGACT 62.694 66.667 9.33 0.00 33.89 3.41
880 882 4.013050 GTTTTGAAATGGGGGAGAGAGAG 58.987 47.826 0.00 0.00 0.00 3.20
881 883 3.657727 AGTTTTGAAATGGGGGAGAGAGA 59.342 43.478 0.00 0.00 0.00 3.10
888 890 3.238597 TCTGGAAGTTTTGAAATGGGGG 58.761 45.455 0.00 0.00 33.76 5.40
987 989 1.191489 TCTCCATGGTGCTTCCGACA 61.191 55.000 12.58 0.00 39.52 4.35
1240 1501 3.003763 GACGGGCTTCCCTCCACT 61.004 66.667 0.00 0.00 42.67 4.00
1363 1625 4.156008 AGCCTCAAAGCGAATTAAAATCGT 59.844 37.500 13.45 1.47 42.15 3.73
1506 1781 5.123027 TGCATATCAATGTTCTGCACGTTTA 59.877 36.000 1.02 0.00 37.88 2.01
1606 1882 7.887996 TCAGCATTTAAAATGGTTCAATGTC 57.112 32.000 0.00 0.00 0.00 3.06
1660 1936 4.575236 TCAAACCAACTACAAACGCATACA 59.425 37.500 0.00 0.00 0.00 2.29
1704 1980 4.214758 GCAACTAGGCTAGAGTAGTAGAGC 59.785 50.000 27.59 12.53 0.00 4.09
1824 2110 0.842635 CTCTCTGGATTTGGAGGGGG 59.157 60.000 0.00 0.00 0.00 5.40
1858 2144 6.593268 TGAAGATGAATTGATTCCAAAGCA 57.407 33.333 1.56 0.00 35.67 3.91
1895 2181 6.863126 CCAATGAAAATTAACGATAGCATCCC 59.137 38.462 0.00 0.00 42.67 3.85
1928 2214 6.467677 TCAAAATTAAAATGGATTCCGCCAA 58.532 32.000 0.00 0.00 42.16 4.52
2004 2291 8.624701 CAATTCCTTTGCATAACTGATACAAG 57.375 34.615 0.00 0.00 0.00 3.16
2049 2336 2.108970 AGGTCTAACCGATGAAGGACC 58.891 52.381 0.00 0.00 44.90 4.46
2327 2618 9.407380 ACTAAACCATGCTGATAAATTATGTCA 57.593 29.630 0.00 0.00 0.00 3.58
2523 2815 0.977395 AACCAGTCCAGAGGCAGTAC 59.023 55.000 0.00 0.00 0.00 2.73
2556 2848 4.454847 GGTCAAAGTTAGGCTCAAAGTACC 59.545 45.833 0.00 0.00 0.00 3.34
2816 3108 6.488006 AGAATTGCTGCTATGGTAATACCTTG 59.512 38.462 11.16 2.24 39.58 3.61
3013 3306 3.642503 ATCAAACGGTGGGGGCGA 61.643 61.111 0.00 0.00 0.00 5.54
3036 3329 5.503031 CGGCTGTGCAGAATAATAAAGAGTG 60.503 44.000 3.02 0.00 0.00 3.51
3053 3346 0.247460 TTCTGACCATCTCGGCTGTG 59.753 55.000 0.00 0.00 39.03 3.66
3138 3431 3.448093 TGAGAAGCAGGAGAGAGAGAA 57.552 47.619 0.00 0.00 0.00 2.87
3256 3575 4.456222 TGTTTTTCAACAGAACAGGACGAA 59.544 37.500 0.00 0.00 38.03 3.85
3258 3577 4.349663 TGTTTTTCAACAGAACAGGACG 57.650 40.909 0.00 0.00 38.03 4.79
3350 3669 7.339466 ACAAAGAACAGTTTGATAAAGTCCACT 59.661 33.333 3.44 0.00 39.40 4.00
3790 4122 2.689983 CAGGGAATGGATGGTTAAGCAC 59.310 50.000 9.99 4.26 0.00 4.40
3881 4213 3.226682 TGCAGCCTTGGCATATGAATA 57.773 42.857 14.54 0.00 36.11 1.75
3917 4249 5.771666 AGACATGGAAATGTAAGCCCATATG 59.228 40.000 0.00 0.00 37.30 1.78
3999 4331 2.965831 TGAAATAGGGATGCTCTAGCGT 59.034 45.455 0.00 0.00 45.83 5.07
4088 4420 0.882042 ACAAGTTGGTGAGCAGAGCG 60.882 55.000 7.96 0.00 0.00 5.03
4110 4442 0.754472 TCAGCATCGATCTCATGGCA 59.246 50.000 0.00 0.00 0.00 4.92
4236 4568 8.349245 ACAGTATCTTCAGTCGATAATTCTCAG 58.651 37.037 0.00 0.00 0.00 3.35
4310 4657 3.563808 GCTACACAAATGTCTGTTGTCCA 59.436 43.478 0.00 0.00 40.48 4.02
4417 4764 4.595538 TCCACGGACACACGCCAC 62.596 66.667 0.00 0.00 37.37 5.01
4418 4765 3.800685 CTTCCACGGACACACGCCA 62.801 63.158 0.00 0.00 37.37 5.69
4446 4793 8.855110 TGTTAAATGTCCACATCAAATGTAACT 58.145 29.630 0.00 0.00 42.70 2.24
4447 4794 9.638239 ATGTTAAATGTCCACATCAAATGTAAC 57.362 29.630 0.00 0.00 42.70 2.50
4508 4855 1.066430 TCATTACAGTTCCCGCACCTC 60.066 52.381 0.00 0.00 0.00 3.85
4512 4859 0.323302 TGCTCATTACAGTTCCCGCA 59.677 50.000 0.00 0.00 0.00 5.69
4565 4912 2.671070 GCATGACTTTTGCTAAACCGGG 60.671 50.000 6.32 0.00 37.14 5.73
4594 5066 0.879839 AATTTGGCAAAGCGGTGTGC 60.880 50.000 21.51 21.51 46.98 4.57
4601 5073 2.419667 AGCATGACAATTTGGCAAAGC 58.580 42.857 18.61 19.66 39.86 3.51
4624 5096 7.094377 GCATGTGGAAGTTCATAGTCCTTTTTA 60.094 37.037 5.01 0.00 32.28 1.52
4625 5097 6.294731 GCATGTGGAAGTTCATAGTCCTTTTT 60.295 38.462 5.01 0.00 32.28 1.94
4626 5098 5.183904 GCATGTGGAAGTTCATAGTCCTTTT 59.816 40.000 5.01 0.00 32.28 2.27
4643 5115 1.331214 ACCTCAAACAAGGCATGTGG 58.669 50.000 0.00 0.00 42.99 4.17
4646 5118 5.431765 ACTCTATACCTCAAACAAGGCATG 58.568 41.667 0.00 0.00 40.34 4.06
4647 5119 5.700402 ACTCTATACCTCAAACAAGGCAT 57.300 39.130 0.00 0.00 40.34 4.40
4667 5139 0.622136 TCATGAGCTGGCATCCAACT 59.378 50.000 0.00 0.00 32.03 3.16
4704 5176 2.652348 TGTCCAGGAATATGTTTGGGGT 59.348 45.455 0.00 0.00 0.00 4.95
4708 5180 5.395546 CCCCAAATGTCCAGGAATATGTTTG 60.396 44.000 0.00 0.00 0.00 2.93
4709 5181 4.716287 CCCCAAATGTCCAGGAATATGTTT 59.284 41.667 0.00 0.00 0.00 2.83
4710 5182 4.264804 ACCCCAAATGTCCAGGAATATGTT 60.265 41.667 0.00 0.00 0.00 2.71
4717 5189 1.075374 CAAGACCCCAAATGTCCAGGA 59.925 52.381 0.00 0.00 33.09 3.86
4719 5191 2.292828 ACAAGACCCCAAATGTCCAG 57.707 50.000 0.00 0.00 33.09 3.86
4753 5225 3.394606 TGGAGTTGCCCTTAAGACTTCTT 59.605 43.478 3.36 0.00 36.49 2.52
4808 5280 2.158885 TGGGTTGTGATTTCTGTCGACA 60.159 45.455 18.88 18.88 0.00 4.35
4825 5297 1.472480 GTTTATGTCTGCGCATTGGGT 59.528 47.619 12.24 0.00 0.00 4.51
4834 5306 4.929315 CACAAAACGTGTTTATGTCTGC 57.071 40.909 0.00 0.00 38.92 4.26
4846 5318 2.045561 TCCACATGGACACAAAACGT 57.954 45.000 0.00 0.00 39.78 3.99
4872 5345 1.228862 AGCCCAAATTTGAGGCGGT 60.229 52.632 29.28 18.67 44.23 5.68
4890 5363 0.466372 TTCGTGTGGATGCAAACCCA 60.466 50.000 1.40 6.33 0.00 4.51
4912 5385 1.939785 GCGCGGTGTGTCTATCTCG 60.940 63.158 8.83 0.00 0.00 4.04
4918 5391 3.112075 CGAATGCGCGGTGTGTCT 61.112 61.111 8.83 0.00 0.00 3.41
4931 5404 2.125512 GGCGGACACTGAGCGAAT 60.126 61.111 0.00 0.00 0.00 3.34
4939 5412 1.982938 GGACTGTAGGGCGGACACT 60.983 63.158 0.00 0.00 0.00 3.55
4940 5413 1.542187 AAGGACTGTAGGGCGGACAC 61.542 60.000 0.00 0.00 0.00 3.67
4980 5453 4.821589 GAAGAGTGGGCGCTCCGG 62.822 72.222 3.94 0.00 38.76 5.14
4981 5454 3.708220 GAGAAGAGTGGGCGCTCCG 62.708 68.421 3.94 0.00 38.76 4.63
4982 5455 2.185608 GAGAAGAGTGGGCGCTCC 59.814 66.667 3.94 6.36 36.20 4.70
4983 5456 2.185608 GGAGAAGAGTGGGCGCTC 59.814 66.667 7.64 2.47 35.82 5.03
4984 5457 3.394836 GGGAGAAGAGTGGGCGCT 61.395 66.667 7.64 0.00 0.00 5.92
4985 5458 3.378399 GAGGGAGAAGAGTGGGCGC 62.378 68.421 0.00 0.00 0.00 6.53
5017 5490 1.883084 GTTGGGCACTATCGAGCGG 60.883 63.158 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.