Multiple sequence alignment - TraesCS4A01G191900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G191900 chr4A 100.000 5749 0 0 1 5749 472193252 472199000 0.000000e+00 10617.0
1 TraesCS4A01G191900 chr4A 90.493 284 25 2 4896 5178 5255126 5254844 1.960000e-99 374.0
2 TraesCS4A01G191900 chr4A 100.000 30 0 0 139 168 362075991 362076020 8.050000e-04 56.5
3 TraesCS4A01G191900 chr4D 93.443 2303 109 15 1 2286 102875881 102873604 0.000000e+00 3378.0
4 TraesCS4A01G191900 chr4D 95.895 1291 50 2 3608 4898 102872615 102871328 0.000000e+00 2087.0
5 TraesCS4A01G191900 chr4D 86.935 597 48 10 5176 5747 102871336 102870745 1.350000e-180 643.0
6 TraesCS4A01G191900 chr4B 95.328 1648 57 6 685 2315 147331419 147329775 0.000000e+00 2599.0
7 TraesCS4A01G191900 chr4B 93.379 1450 70 11 3369 4812 147329383 147327954 0.000000e+00 2122.0
8 TraesCS4A01G191900 chr4B 89.398 698 55 10 1 696 147338215 147337535 0.000000e+00 861.0
9 TraesCS4A01G191900 chr4B 89.965 289 29 0 4890 5178 814101 814389 1.960000e-99 374.0
10 TraesCS4A01G191900 chr4B 90.909 220 17 1 5226 5445 147325769 147325553 5.630000e-75 292.0
11 TraesCS4A01G191900 chr4B 93.939 99 6 0 4799 4897 147326166 147326068 3.590000e-32 150.0
12 TraesCS4A01G191900 chr5A 85.902 610 69 11 2349 2946 611030028 611029424 8.130000e-178 634.0
13 TraesCS4A01G191900 chr5A 95.161 310 15 0 3017 3326 13350171 13350480 1.860000e-134 490.0
14 TraesCS4A01G191900 chr5A 95.738 305 12 1 2478 2781 598668158 598668462 1.860000e-134 490.0
15 TraesCS4A01G191900 chr5A 95.440 307 12 1 2471 2777 396184906 396184602 6.700000e-134 488.0
16 TraesCS4A01G191900 chr5A 95.946 296 12 0 3026 3321 25819746 25820041 1.120000e-131 481.0
17 TraesCS4A01G191900 chr5A 92.398 171 13 0 2778 2948 53148929 53148759 1.600000e-60 244.0
18 TraesCS4A01G191900 chr5A 92.754 138 7 2 2347 2484 53149059 53148925 4.540000e-46 196.0
19 TraesCS4A01G191900 chr5A 91.304 138 9 2 2347 2484 581626794 581626660 9.840000e-43 185.0
20 TraesCS4A01G191900 chr3A 97.297 296 8 0 3027 3322 541676 541971 2.390000e-138 503.0
21 TraesCS4A01G191900 chr3A 96.610 295 9 1 2483 2777 57085366 57085073 6.700000e-134 488.0
22 TraesCS4A01G191900 chr3A 96.271 295 10 1 2483 2777 454772206 454771913 3.110000e-132 483.0
23 TraesCS4A01G191900 chr3A 94.463 307 16 1 3023 3329 316668048 316668353 6.740000e-129 472.0
24 TraesCS4A01G191900 chr3A 92.899 169 10 1 2778 2946 749370389 749370223 1.600000e-60 244.0
25 TraesCS4A01G191900 chr3A 91.525 177 13 2 2778 2953 83218737 83218562 5.760000e-60 243.0
26 TraesCS4A01G191900 chr3A 93.651 126 7 1 2349 2474 235450865 235450989 2.740000e-43 187.0
27 TraesCS4A01G191900 chr3A 91.912 136 8 2 2349 2484 672676639 672676507 2.740000e-43 187.0
28 TraesCS4A01G191900 chr3A 82.781 151 24 2 1671 1820 244351925 244352074 3.610000e-27 134.0
29 TraesCS4A01G191900 chr3A 80.000 145 27 2 3936 4079 244352985 244353128 7.880000e-19 106.0
30 TraesCS4A01G191900 chr1A 97.603 292 7 0 2483 2774 28615962 28616253 8.600000e-138 501.0
31 TraesCS4A01G191900 chr1A 96.959 296 8 1 3026 3321 108155098 108154804 4.000000e-136 496.0
32 TraesCS4A01G191900 chr1A 92.899 169 11 1 2778 2946 561408265 561408432 1.600000e-60 244.0
33 TraesCS4A01G191900 chr1A 91.912 136 9 2 2349 2484 82151602 82151469 7.600000e-44 189.0
34 TraesCS4A01G191900 chr7A 96.091 307 10 2 2471 2777 477310132 477309828 3.090000e-137 499.0
35 TraesCS4A01G191900 chr7A 94.737 304 15 1 3019 3322 426641755 426642057 6.740000e-129 472.0
36 TraesCS4A01G191900 chr7A 91.379 174 15 0 2778 2951 717518182 717518009 7.440000e-59 239.0
37 TraesCS4A01G191900 chr7A 90.110 182 15 2 2778 2959 572135354 572135176 3.460000e-57 233.0
38 TraesCS4A01G191900 chr7A 92.029 138 9 2 2347 2484 572135485 572135350 5.880000e-45 193.0
39 TraesCS4A01G191900 chr6A 96.321 299 10 1 2484 2781 602490120 602489822 1.860000e-134 490.0
40 TraesCS4A01G191900 chr6A 90.493 284 26 1 4896 5178 532930003 532929720 1.960000e-99 374.0
41 TraesCS4A01G191900 chr6A 94.030 134 7 1 2342 2475 139422218 139422086 9.770000e-48 202.0
42 TraesCS4A01G191900 chr6A 86.628 172 15 3 2349 2515 109496430 109496598 3.540000e-42 183.0
43 TraesCS4A01G191900 chr2A 96.271 295 10 1 2483 2777 146749625 146749332 3.110000e-132 483.0
44 TraesCS4A01G191900 chr2A 95.973 298 11 1 2480 2777 513641077 513641373 3.110000e-132 483.0
45 TraesCS4A01G191900 chr2A 95.349 301 14 0 3022 3322 181469017 181469317 4.030000e-131 479.0
46 TraesCS4A01G191900 chr2A 95.066 304 14 1 3019 3322 133765089 133765391 1.450000e-130 477.0
47 TraesCS4A01G191900 chr2A 92.778 180 10 3 2778 2955 655945198 655945020 2.060000e-64 257.0
48 TraesCS4A01G191900 chr2A 93.567 171 11 0 2778 2948 70660365 70660535 7.390000e-64 255.0
49 TraesCS4A01G191900 chr2A 93.478 138 7 2 2347 2484 203459496 203459631 2.720000e-48 204.0
50 TraesCS4A01G191900 chr5B 93.610 313 18 1 3026 3338 26842385 26842075 3.140000e-127 466.0
51 TraesCS4A01G191900 chr5B 90.459 283 27 0 4896 5178 702896598 702896880 1.960000e-99 374.0
52 TraesCS4A01G191900 chr7B 91.549 284 23 1 4896 5178 663837634 663837917 1.940000e-104 390.0
53 TraesCS4A01G191900 chr7B 90.493 284 26 1 4896 5178 728122711 728122428 1.960000e-99 374.0
54 TraesCS4A01G191900 chr1B 91.197 284 24 1 4896 5178 683992174 683991891 9.040000e-103 385.0
55 TraesCS4A01G191900 chr1B 90.526 285 25 2 4896 5178 458384343 458384059 5.440000e-100 375.0
56 TraesCS4A01G191900 chr2D 90.493 284 25 2 4896 5178 618294777 618294495 1.960000e-99 374.0
57 TraesCS4A01G191900 chr3B 83.007 153 20 6 1671 1820 264009158 264009307 3.610000e-27 134.0
58 TraesCS4A01G191900 chr3B 84.071 113 18 0 3936 4048 264009562 264009674 6.090000e-20 110.0
59 TraesCS4A01G191900 chr3D 81.250 144 27 0 3936 4079 185236703 185236846 3.640000e-22 117.0
60 TraesCS4A01G191900 chr6D 79.845 129 19 6 5604 5730 459816191 459816314 2.850000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G191900 chr4A 472193252 472199000 5748 False 10617.00 10617 100.00000 1 5749 1 chr4A.!!$F2 5748
1 TraesCS4A01G191900 chr4D 102870745 102875881 5136 True 2036.00 3378 92.09100 1 5747 3 chr4D.!!$R1 5746
2 TraesCS4A01G191900 chr4B 147325553 147331419 5866 True 1290.75 2599 93.38875 685 5445 4 chr4B.!!$R2 4760
3 TraesCS4A01G191900 chr4B 147337535 147338215 680 True 861.00 861 89.39800 1 696 1 chr4B.!!$R1 695
4 TraesCS4A01G191900 chr5A 611029424 611030028 604 True 634.00 634 85.90200 2349 2946 1 chr5A.!!$R3 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
307 308 0.458669 GCGATGTCCTTCGTCCCTAA 59.541 55.000 4.78 0.00 41.16 2.69 F
1203 1214 1.152830 TGTTCCAAAGGGAGGGTGC 59.847 57.895 0.00 0.00 46.01 5.01 F
2369 2410 1.564348 GGCCTCCTTTGGTTCATAGGA 59.436 52.381 0.00 6.86 38.81 2.94 F
2499 2540 0.537371 CGAGGCCTCCTTTGGTTTGT 60.537 55.000 27.20 0.00 31.76 2.83 F
3875 4550 0.108138 GGTGAACCTGGTCCTCATCG 60.108 60.000 0.00 0.00 0.00 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2061 2077 1.069358 GCTCTAATTAGACAGCGCCCT 59.931 52.381 11.24 1.09 0.00 5.19 R
2480 2521 0.537371 ACAAACCAAAGGAGGCCTCG 60.537 55.000 26.36 14.50 30.89 4.63 R
3436 3700 0.327924 CCAAAAATTCCAAGGCCCCC 59.672 55.000 0.00 0.00 0.00 5.40 R
4444 5119 1.020333 CGACCGACTCCGAGTCTTCT 61.020 60.000 23.09 7.83 42.92 2.85 R
5028 7506 0.034896 AGGTGCCTACGGTGACTTTG 59.965 55.000 0.00 0.00 0.00 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.873781 CGTTGGGCTAGGGATTTGA 57.126 52.632 0.00 0.00 0.00 2.69
53 54 1.299562 TGAGTGAGCGACCGAGAGAC 61.300 60.000 0.00 0.00 0.00 3.36
60 61 1.658686 GCGACCGAGAGACCATGAGT 61.659 60.000 0.00 0.00 0.00 3.41
122 123 5.702209 ACCAAGGTAATTTCGTAAACGTGAT 59.298 36.000 2.02 0.00 40.80 3.06
169 170 8.958119 AAAACATCTTATAATAGTGAGCGGAA 57.042 30.769 0.00 0.00 0.00 4.30
179 180 1.064611 AGTGAGCGGAAGGAGTAGCTA 60.065 52.381 0.00 0.00 40.39 3.32
196 197 8.678199 GGAGTAGCTATTTGTTTCAGCTTTTAT 58.322 33.333 0.00 0.00 42.95 1.40
252 253 7.150640 CCGTAAAACTAATAGGGTCATAGGAC 58.849 42.308 0.00 0.00 43.55 3.85
283 284 5.509670 GCCAAACTCCAGCAATAAAGAACTT 60.510 40.000 0.00 0.00 0.00 2.66
285 286 7.308435 CCAAACTCCAGCAATAAAGAACTTAG 58.692 38.462 0.00 0.00 0.00 2.18
301 302 3.015327 ACTTAGTAGCGATGTCCTTCGT 58.985 45.455 4.78 0.00 41.16 3.85
307 308 0.458669 GCGATGTCCTTCGTCCCTAA 59.541 55.000 4.78 0.00 41.16 2.69
329 330 5.990120 AAGCATCTCCAATAGCTTTTGTT 57.010 34.783 14.65 0.00 44.22 2.83
354 356 5.638596 AACTCCCTAAATGCTTTTTACGG 57.361 39.130 2.59 2.98 0.00 4.02
387 389 9.519191 GTAAAATTTAGGGGAAGTTAACAGGTA 57.481 33.333 8.61 0.00 0.00 3.08
446 448 3.532155 GTTTTGGGCGGTGGTGCA 61.532 61.111 0.00 0.00 36.28 4.57
509 511 4.758251 CGGCATGGCAGTCGGTGA 62.758 66.667 20.37 0.00 0.00 4.02
541 543 2.027192 GCAGGGTGGTTAGATGACAAGA 60.027 50.000 0.00 0.00 0.00 3.02
552 554 7.936847 TGGTTAGATGACAAGACACTTTTACAT 59.063 33.333 0.00 0.00 0.00 2.29
621 623 4.837860 ACAGAATCCCCTACAAAATTTGCA 59.162 37.500 5.52 0.00 0.00 4.08
683 687 4.212636 CCTGAACAACGATTACCGAAACTT 59.787 41.667 0.00 0.00 41.76 2.66
769 773 3.960102 AGCAAGAAAATTTGAGTGGGACA 59.040 39.130 0.00 0.00 0.00 4.02
858 869 4.534500 TCAGCTATCCTTTTCCTACAACCA 59.466 41.667 0.00 0.00 0.00 3.67
883 894 1.414550 GTGCCATAGGTCTTCCCTCTC 59.585 57.143 0.00 0.00 44.81 3.20
1159 1170 3.010250 AGTTTGGAGGGGAAGGAATGTAC 59.990 47.826 0.00 0.00 0.00 2.90
1203 1214 1.152830 TGTTCCAAAGGGAGGGTGC 59.847 57.895 0.00 0.00 46.01 5.01
1233 1244 7.854422 CCATTAGTTCATTCGATCAATCTTGTG 59.146 37.037 0.00 0.00 0.00 3.33
1464 1475 3.003068 CGATGTCCATTGATTCCTTGAGC 59.997 47.826 0.00 0.00 0.00 4.26
1510 1521 3.695556 TGACCGATCGTTAAGTACCATGA 59.304 43.478 15.09 0.00 0.00 3.07
1526 1537 3.139850 CCATGAGATGTGCAGGATCTTC 58.860 50.000 9.11 4.67 29.97 2.87
1853 1864 4.011023 CCACCTCGTAGCAGCTAGTATAT 58.989 47.826 1.02 0.00 0.00 0.86
1854 1865 5.046087 TCCACCTCGTAGCAGCTAGTATATA 60.046 44.000 1.02 0.00 0.00 0.86
1856 1867 6.990939 CCACCTCGTAGCAGCTAGTATATATA 59.009 42.308 1.02 0.00 0.00 0.86
1857 1868 7.041916 CCACCTCGTAGCAGCTAGTATATATAC 60.042 44.444 14.05 14.05 0.00 1.47
1858 1869 6.991531 ACCTCGTAGCAGCTAGTATATATACC 59.008 42.308 17.52 4.72 33.79 2.73
1905 1921 6.814146 TCGTAAGTTGCCTGAATTTTGTTTTT 59.186 30.769 0.00 0.00 39.48 1.94
2060 2076 3.644606 CACTGCACCCTCCCTGCT 61.645 66.667 0.00 0.00 35.53 4.24
2061 2077 2.122729 ACTGCACCCTCCCTGCTA 59.877 61.111 0.00 0.00 35.53 3.49
2303 2324 3.887621 AAGCTGCCTTCTATTACGACA 57.112 42.857 0.00 0.00 0.00 4.35
2323 2364 5.995260 GACAGTTGTCTTCCCTTTGTTGGG 61.995 50.000 5.04 0.00 43.66 4.12
2369 2410 1.564348 GGCCTCCTTTGGTTCATAGGA 59.436 52.381 0.00 6.86 38.81 2.94
2370 2411 2.175715 GGCCTCCTTTGGTTCATAGGAT 59.824 50.000 0.00 0.00 39.94 3.24
2372 2413 4.505742 GGCCTCCTTTGGTTCATAGGATAG 60.506 50.000 0.00 4.66 39.94 2.08
2373 2414 4.348168 GCCTCCTTTGGTTCATAGGATAGA 59.652 45.833 7.38 0.00 39.94 1.98
2457 2498 4.331168 GGGAAAGAGATGTCACTTGATTCG 59.669 45.833 0.00 0.00 0.00 3.34
2465 2506 7.450014 AGAGATGTCACTTGATTCGTAGGATAT 59.550 37.037 0.00 0.00 0.00 1.63
2472 2513 9.613428 TCACTTGATTCGTAGGATATGATTTTT 57.387 29.630 0.00 0.00 36.31 1.94
2499 2540 0.537371 CGAGGCCTCCTTTGGTTTGT 60.537 55.000 27.20 0.00 31.76 2.83
2506 2547 3.193479 GCCTCCTTTGGTTTGTAGGAATG 59.807 47.826 0.00 0.00 37.61 2.67
2515 2556 6.575244 TGGTTTGTAGGAATGTCATAGGAT 57.425 37.500 0.00 0.00 0.00 3.24
2542 2583 9.560860 TTCTATAGGATAGGATTTGCATAGGAA 57.439 33.333 0.00 0.00 0.00 3.36
2543 2584 9.560860 TCTATAGGATAGGATTTGCATAGGAAA 57.439 33.333 0.00 0.00 0.00 3.13
2567 2608 1.062505 TCCTTTGAGGCCCTTTGGTTT 60.063 47.619 0.00 0.00 34.61 3.27
2624 2665 6.700352 GGAATCAATCCTTCACATTTTGGAA 58.300 36.000 0.00 0.00 45.56 3.53
2630 2671 8.263640 TCAATCCTTCACATTTTGGAAGAAAAA 58.736 29.630 0.00 0.00 42.39 1.94
2656 2697 7.856145 AACATTAGCTAAGACTCAATGGAAG 57.144 36.000 12.54 0.00 32.20 3.46
2691 2732 9.445878 TCCTATGCATCAAATGATATCTCTTTC 57.554 33.333 0.19 0.00 32.63 2.62
2692 2733 9.451002 CCTATGCATCAAATGATATCTCTTTCT 57.549 33.333 0.19 0.00 32.63 2.52
2730 2781 6.862711 ATGCATGTCATCTCACTTTCTATG 57.137 37.500 0.00 0.00 0.00 2.23
2732 2783 6.589135 TGCATGTCATCTCACTTTCTATGAT 58.411 36.000 0.00 0.00 31.49 2.45
2733 2784 7.052248 TGCATGTCATCTCACTTTCTATGATT 58.948 34.615 0.00 0.00 31.49 2.57
2771 2822 8.960591 ACAACATTTCTATCCTATGAACCAAAG 58.039 33.333 0.00 0.00 0.00 2.77
2777 2828 2.562296 TCCTATGAACCAAAGGAGGCT 58.438 47.619 0.00 0.00 34.46 4.58
2873 2924 5.887754 TCATTCCTACAAACTAAAGGGCTT 58.112 37.500 0.00 0.00 0.00 4.35
2878 2929 6.412214 TCCTACAAACTAAAGGGCTTCATAC 58.588 40.000 0.00 0.00 0.00 2.39
2879 2930 6.013206 TCCTACAAACTAAAGGGCTTCATACA 60.013 38.462 0.00 0.00 0.00 2.29
2962 3013 2.683362 GGCCTTAATGTTCTGGTGCTAC 59.317 50.000 0.00 0.00 0.00 3.58
3006 3058 2.894765 TGGTCGTGGTTCAAGTCTCATA 59.105 45.455 0.00 0.00 0.00 2.15
3023 3075 9.632638 AAGTCTCATATAACTTGTGGCATATTT 57.367 29.630 0.00 0.00 34.52 1.40
3024 3076 9.632638 AGTCTCATATAACTTGTGGCATATTTT 57.367 29.630 0.00 0.00 0.00 1.82
3025 3077 9.669353 GTCTCATATAACTTGTGGCATATTTTG 57.331 33.333 0.00 0.00 0.00 2.44
3026 3078 8.849168 TCTCATATAACTTGTGGCATATTTTGG 58.151 33.333 0.00 0.00 0.00 3.28
3036 3088 3.534554 GGCATATTTTGGCCTTCTTTGG 58.465 45.455 3.32 0.00 46.74 3.28
3037 3089 3.055167 GGCATATTTTGGCCTTCTTTGGT 60.055 43.478 3.32 0.00 46.74 3.67
3038 3090 4.565444 GGCATATTTTGGCCTTCTTTGGTT 60.565 41.667 3.32 0.00 46.74 3.67
3039 3091 4.631377 GCATATTTTGGCCTTCTTTGGTTC 59.369 41.667 3.32 0.00 0.00 3.62
3040 3092 5.792741 CATATTTTGGCCTTCTTTGGTTCA 58.207 37.500 3.32 0.00 0.00 3.18
3041 3093 4.980339 ATTTTGGCCTTCTTTGGTTCAT 57.020 36.364 3.32 0.00 0.00 2.57
3042 3094 7.555087 CATATTTTGGCCTTCTTTGGTTCATA 58.445 34.615 3.32 0.00 0.00 2.15
3043 3095 5.467035 TTTTGGCCTTCTTTGGTTCATAG 57.533 39.130 3.32 0.00 0.00 2.23
3044 3096 3.085952 TGGCCTTCTTTGGTTCATAGG 57.914 47.619 3.32 0.00 0.00 2.57
3045 3097 2.647299 TGGCCTTCTTTGGTTCATAGGA 59.353 45.455 3.32 0.00 0.00 2.94
3046 3098 3.269381 TGGCCTTCTTTGGTTCATAGGAT 59.731 43.478 3.32 0.00 0.00 3.24
3047 3099 4.476846 TGGCCTTCTTTGGTTCATAGGATA 59.523 41.667 3.32 0.00 0.00 2.59
3048 3100 5.066593 GGCCTTCTTTGGTTCATAGGATAG 58.933 45.833 0.00 0.00 0.00 2.08
3049 3101 5.066593 GCCTTCTTTGGTTCATAGGATAGG 58.933 45.833 0.00 0.00 0.00 2.57
3050 3102 5.163195 GCCTTCTTTGGTTCATAGGATAGGA 60.163 44.000 0.00 0.00 0.00 2.94
3051 3103 6.634955 GCCTTCTTTGGTTCATAGGATAGGAA 60.635 42.308 0.00 0.00 39.27 3.36
3052 3104 7.521669 CCTTCTTTGGTTCATAGGATAGGAAT 58.478 38.462 0.00 0.00 43.72 3.01
3053 3105 8.001292 CCTTCTTTGGTTCATAGGATAGGAATT 58.999 37.037 0.00 0.00 43.72 2.17
3054 3106 9.413734 CTTCTTTGGTTCATAGGATAGGAATTT 57.586 33.333 0.00 0.00 43.72 1.82
3055 3107 9.768215 TTCTTTGGTTCATAGGATAGGAATTTT 57.232 29.630 0.00 0.00 43.72 1.82
3094 3146 8.913487 AATCATAGAAAGTGATATGACATGCA 57.087 30.769 0.00 0.00 40.29 3.96
3095 3147 9.516546 AATCATAGAAAGTGATATGACATGCAT 57.483 29.630 0.00 0.00 40.29 3.96
3096 3148 8.319143 TCATAGAAAGTGATATGACATGCATG 57.681 34.615 25.09 25.09 37.87 4.06
3097 3149 7.935210 TCATAGAAAGTGATATGACATGCATGT 59.065 33.333 31.82 31.82 45.16 3.21
3113 3165 8.604640 ACATGCATGTCAATTTCTATAGAGAG 57.395 34.615 26.61 0.00 35.87 3.20
3114 3166 8.427276 ACATGCATGTCAATTTCTATAGAGAGA 58.573 33.333 26.61 0.00 35.87 3.10
3115 3167 9.269453 CATGCATGTCAATTTCTATAGAGAGAA 57.731 33.333 18.91 0.00 33.57 2.87
3116 3168 9.842775 ATGCATGTCAATTTCTATAGAGAGAAA 57.157 29.630 0.00 2.07 46.63 2.52
3117 3169 9.322773 TGCATGTCAATTTCTATAGAGAGAAAG 57.677 33.333 2.02 0.00 45.98 2.62
3118 3170 9.539825 GCATGTCAATTTCTATAGAGAGAAAGA 57.460 33.333 2.02 0.00 45.98 2.52
3131 3183 6.680874 AGAGAGAAAGATGTCATTTGATGC 57.319 37.500 0.00 0.00 0.00 3.91
3132 3184 6.178324 AGAGAGAAAGATGTCATTTGATGCA 58.822 36.000 0.00 0.00 0.00 3.96
3133 3185 6.829298 AGAGAGAAAGATGTCATTTGATGCAT 59.171 34.615 0.00 0.00 32.43 3.96
3134 3186 7.991460 AGAGAGAAAGATGTCATTTGATGCATA 59.009 33.333 0.00 0.00 30.80 3.14
3135 3187 8.155821 AGAGAAAGATGTCATTTGATGCATAG 57.844 34.615 0.00 0.00 30.80 2.23
3136 3188 7.228906 AGAGAAAGATGTCATTTGATGCATAGG 59.771 37.037 0.00 0.00 30.80 2.57
3137 3189 7.058525 AGAAAGATGTCATTTGATGCATAGGA 58.941 34.615 0.00 0.00 30.80 2.94
3138 3190 7.724506 AGAAAGATGTCATTTGATGCATAGGAT 59.275 33.333 0.00 0.00 30.80 3.24
3139 3191 8.929260 AAAGATGTCATTTGATGCATAGGATA 57.071 30.769 0.00 0.00 30.80 2.59
3140 3192 9.529823 AAAGATGTCATTTGATGCATAGGATAT 57.470 29.630 0.00 0.00 30.80 1.63
3141 3193 8.507524 AGATGTCATTTGATGCATAGGATATG 57.492 34.615 0.00 0.00 30.80 1.78
3142 3194 8.326529 AGATGTCATTTGATGCATAGGATATGA 58.673 33.333 0.00 2.44 30.80 2.15
3143 3195 9.121658 GATGTCATTTGATGCATAGGATATGAT 57.878 33.333 0.00 0.00 30.80 2.45
3144 3196 8.873186 TGTCATTTGATGCATAGGATATGATT 57.127 30.769 0.00 0.00 0.00 2.57
3145 3197 9.304335 TGTCATTTGATGCATAGGATATGATTT 57.696 29.630 0.00 0.00 0.00 2.17
3170 3222 8.635765 TTTTTCATTGAGTCTAGGCTAATGTT 57.364 30.769 18.08 0.00 32.22 2.71
3171 3223 8.635765 TTTTCATTGAGTCTAGGCTAATGTTT 57.364 30.769 18.08 0.00 32.22 2.83
3172 3224 8.635765 TTTCATTGAGTCTAGGCTAATGTTTT 57.364 30.769 18.08 0.00 32.22 2.43
3173 3225 8.635765 TTCATTGAGTCTAGGCTAATGTTTTT 57.364 30.769 18.08 0.00 32.22 1.94
3193 3245 4.379339 TTTTTCCTCCAAAACGTGAAGG 57.621 40.909 0.00 0.00 33.47 3.46
3194 3246 3.284793 TTTCCTCCAAAACGTGAAGGA 57.715 42.857 0.00 0.00 0.00 3.36
3195 3247 3.502123 TTCCTCCAAAACGTGAAGGAT 57.498 42.857 3.90 0.00 0.00 3.24
3196 3248 3.502123 TCCTCCAAAACGTGAAGGATT 57.498 42.857 3.90 0.00 0.00 3.01
3197 3249 6.681865 TTTTTCCTCCAAAACGTGAAGGATTC 60.682 38.462 3.90 0.00 38.52 2.52
3198 3250 8.981045 TTTTTCCTCCAAAACGTGAAGGATTCA 61.981 37.037 3.90 0.00 42.53 2.57
3244 3296 5.965922 GAATCCATTCCTACAAACCAAAGG 58.034 41.667 0.00 0.00 0.00 3.11
3245 3297 3.773560 TCCATTCCTACAAACCAAAGGG 58.226 45.455 0.00 0.00 41.29 3.95
3246 3298 2.233676 CCATTCCTACAAACCAAAGGGC 59.766 50.000 0.00 0.00 37.90 5.19
3247 3299 3.165071 CATTCCTACAAACCAAAGGGCT 58.835 45.455 0.00 0.00 37.90 5.19
3248 3300 2.579410 TCCTACAAACCAAAGGGCTC 57.421 50.000 0.00 0.00 37.90 4.70
3249 3301 1.074889 TCCTACAAACCAAAGGGCTCC 59.925 52.381 0.00 0.00 37.90 4.70
3250 3302 1.203001 CCTACAAACCAAAGGGCTCCA 60.203 52.381 0.00 0.00 37.90 3.86
3251 3303 2.593026 CTACAAACCAAAGGGCTCCAA 58.407 47.619 0.00 0.00 37.90 3.53
3252 3304 1.872773 ACAAACCAAAGGGCTCCAAA 58.127 45.000 0.00 0.00 37.90 3.28
3253 3305 1.762370 ACAAACCAAAGGGCTCCAAAG 59.238 47.619 0.00 0.00 37.90 2.77
3254 3306 1.070601 CAAACCAAAGGGCTCCAAAGG 59.929 52.381 0.00 0.00 37.90 3.11
3255 3307 0.560688 AACCAAAGGGCTCCAAAGGA 59.439 50.000 0.00 0.00 37.90 3.36
3256 3308 0.560688 ACCAAAGGGCTCCAAAGGAA 59.439 50.000 0.00 0.00 37.90 3.36
3257 3309 1.149923 ACCAAAGGGCTCCAAAGGAAT 59.850 47.619 0.00 0.00 37.90 3.01
3258 3310 2.259917 CCAAAGGGCTCCAAAGGAATT 58.740 47.619 0.00 0.00 0.00 2.17
3259 3311 2.639347 CCAAAGGGCTCCAAAGGAATTT 59.361 45.455 0.00 0.00 0.00 1.82
3260 3312 3.072915 CCAAAGGGCTCCAAAGGAATTTT 59.927 43.478 0.00 0.00 0.00 1.82
3261 3313 4.446167 CCAAAGGGCTCCAAAGGAATTTTT 60.446 41.667 0.00 0.00 0.00 1.94
3309 3361 8.803235 AGAATTCCTACAAAAATCCTACAAACC 58.197 33.333 0.65 0.00 0.00 3.27
3310 3362 8.485578 AATTCCTACAAAAATCCTACAAACCA 57.514 30.769 0.00 0.00 0.00 3.67
3311 3363 7.899648 TTCCTACAAAAATCCTACAAACCAA 57.100 32.000 0.00 0.00 0.00 3.67
3312 3364 7.899648 TCCTACAAAAATCCTACAAACCAAA 57.100 32.000 0.00 0.00 0.00 3.28
3313 3365 7.947282 TCCTACAAAAATCCTACAAACCAAAG 58.053 34.615 0.00 0.00 0.00 2.77
3314 3366 7.562088 TCCTACAAAAATCCTACAAACCAAAGT 59.438 33.333 0.00 0.00 0.00 2.66
3315 3367 8.852135 CCTACAAAAATCCTACAAACCAAAGTA 58.148 33.333 0.00 0.00 0.00 2.24
3316 3368 9.893305 CTACAAAAATCCTACAAACCAAAGTAG 57.107 33.333 0.00 0.00 37.92 2.57
3342 3394 6.322491 CCTTTGTTTTAATCGGATCCAAGAC 58.678 40.000 13.41 4.51 0.00 3.01
3343 3395 5.890424 TTGTTTTAATCGGATCCAAGACC 57.110 39.130 13.41 0.00 0.00 3.85
3358 3410 6.874278 TCCAAGACCATCTCTAGAAATTCA 57.126 37.500 0.00 0.00 0.00 2.57
3362 3414 4.102367 AGACCATCTCTAGAAATTCAGGGC 59.898 45.833 0.00 0.00 0.00 5.19
3364 3416 3.393941 CCATCTCTAGAAATTCAGGGCCT 59.606 47.826 0.00 0.00 0.00 5.19
3365 3417 4.504689 CCATCTCTAGAAATTCAGGGCCTC 60.505 50.000 0.95 0.00 0.00 4.70
3443 3707 0.401738 CACATCATAATCGGGGGCCT 59.598 55.000 0.84 0.00 0.00 5.19
3456 3720 1.357137 GGGGCCTTGGAATTTTTGGA 58.643 50.000 0.84 0.00 0.00 3.53
3484 3748 1.576421 GTTACACAGCCTGCACAGC 59.424 57.895 0.00 0.00 0.00 4.40
3491 3755 4.746309 GCCTGCACAGCCCCATGA 62.746 66.667 0.00 0.00 0.00 3.07
3588 3907 1.338020 GTTGTTGCAGAAAGACCCCTG 59.662 52.381 0.00 0.00 0.00 4.45
3606 3925 7.611855 AGACCCCTGTAAGAATTAGTTGATTTG 59.388 37.037 0.00 0.00 34.07 2.32
3733 4408 1.539388 GGACCAATGACGCATTTCACA 59.461 47.619 2.86 0.00 31.05 3.58
3737 4412 3.818210 ACCAATGACGCATTTCACACTTA 59.182 39.130 2.86 0.00 31.05 2.24
3875 4550 0.108138 GGTGAACCTGGTCCTCATCG 60.108 60.000 0.00 0.00 0.00 3.84
3925 4600 3.823330 ATCGTGGAGTCGCCGGTC 61.823 66.667 1.90 0.00 40.66 4.79
4067 4742 0.397564 GGGAAAGTCCAACCCGTACA 59.602 55.000 0.00 0.00 38.64 2.90
4150 4825 1.811266 CTTCCGGCAGATGGTCGTG 60.811 63.158 0.00 0.00 44.95 4.35
4220 4895 3.197790 CCTTCGGCATGCTGTCGG 61.198 66.667 25.42 21.16 46.79 4.79
4282 4957 2.439156 ATGGGCAAGCCGAGCTTC 60.439 61.111 4.80 4.55 46.77 3.86
4363 5038 5.464030 ACATATACAATCCTACCGGTGAC 57.536 43.478 19.93 0.00 0.00 3.67
4444 5119 1.228552 GGGAAGCAAGAAGGTGGCA 60.229 57.895 0.00 0.00 0.00 4.92
4495 5170 2.126580 ACGGCGAGCTACAACGTC 60.127 61.111 16.62 0.00 31.39 4.34
4501 5176 3.621892 GAGCTACAACGTCGCCGGT 62.622 63.158 1.90 0.00 38.78 5.28
4545 5220 3.299585 CGTGTGACGGATGATCGC 58.700 61.111 0.00 0.00 38.08 4.58
4660 5335 0.521735 AAATTTTGGTCGCTCTCGCC 59.478 50.000 0.00 0.00 35.26 5.54
4777 5452 7.804129 CGTTTCTAGAATAGTATCCTGCTACAC 59.196 40.741 5.89 0.00 40.38 2.90
4783 5458 6.488683 AGAATAGTATCCTGCTACACTGACTC 59.511 42.308 0.00 0.00 0.00 3.36
4803 7281 9.508642 CTGACTCTAGTGAAGGTGATGTATATA 57.491 37.037 0.00 0.00 0.00 0.86
4850 7328 0.384353 GCGCGACTTGAGTTTTGGTC 60.384 55.000 12.10 0.00 0.00 4.02
4859 7337 2.334977 TGAGTTTTGGTCTCTGGGCTA 58.665 47.619 0.00 0.00 33.59 3.93
4895 7373 4.096003 ACCGGCGGCAGCTTGTAT 62.096 61.111 28.71 0.00 44.37 2.29
4896 7374 2.824041 CCGGCGGCAGCTTGTATT 60.824 61.111 15.42 0.00 44.37 1.89
4897 7375 2.406616 CCGGCGGCAGCTTGTATTT 61.407 57.895 15.42 0.00 44.37 1.40
4898 7376 1.506262 CGGCGGCAGCTTGTATTTT 59.494 52.632 10.53 0.00 44.37 1.82
4899 7377 0.109319 CGGCGGCAGCTTGTATTTTT 60.109 50.000 10.53 0.00 44.37 1.94
4924 7402 7.694388 TTAACATCAGTACAGATACAATCGC 57.306 36.000 0.00 0.00 33.30 4.58
4925 7403 5.521906 ACATCAGTACAGATACAATCGCT 57.478 39.130 0.00 0.00 33.30 4.93
4926 7404 5.524284 ACATCAGTACAGATACAATCGCTC 58.476 41.667 0.00 0.00 33.30 5.03
4927 7405 5.067805 ACATCAGTACAGATACAATCGCTCA 59.932 40.000 0.00 0.00 33.30 4.26
4928 7406 5.774498 TCAGTACAGATACAATCGCTCAT 57.226 39.130 0.00 0.00 33.30 2.90
4929 7407 6.877611 TCAGTACAGATACAATCGCTCATA 57.122 37.500 0.00 0.00 33.30 2.15
4930 7408 7.454260 TCAGTACAGATACAATCGCTCATAT 57.546 36.000 0.00 0.00 33.30 1.78
4931 7409 8.561738 TCAGTACAGATACAATCGCTCATATA 57.438 34.615 0.00 0.00 33.30 0.86
4932 7410 8.451748 TCAGTACAGATACAATCGCTCATATAC 58.548 37.037 0.00 0.00 33.30 1.47
4933 7411 8.237267 CAGTACAGATACAATCGCTCATATACA 58.763 37.037 0.00 0.00 33.30 2.29
4934 7412 8.237949 AGTACAGATACAATCGCTCATATACAC 58.762 37.037 0.00 0.00 33.30 2.90
4935 7413 6.086871 ACAGATACAATCGCTCATATACACG 58.913 40.000 0.00 0.00 0.00 4.49
4936 7414 6.086871 CAGATACAATCGCTCATATACACGT 58.913 40.000 0.00 0.00 0.00 4.49
4937 7415 6.032880 CAGATACAATCGCTCATATACACGTG 59.967 42.308 15.48 15.48 0.00 4.49
4938 7416 2.794910 ACAATCGCTCATATACACGTGC 59.205 45.455 17.22 0.00 0.00 5.34
4939 7417 2.793278 ATCGCTCATATACACGTGCA 57.207 45.000 17.22 2.06 0.00 4.57
4940 7418 2.793278 TCGCTCATATACACGTGCAT 57.207 45.000 17.22 11.52 0.00 3.96
4941 7419 3.907894 TCGCTCATATACACGTGCATA 57.092 42.857 17.22 13.68 0.00 3.14
4942 7420 3.561503 TCGCTCATATACACGTGCATAC 58.438 45.455 17.22 0.00 0.00 2.39
4943 7421 3.003897 TCGCTCATATACACGTGCATACA 59.996 43.478 17.22 2.39 0.00 2.29
4944 7422 3.920412 CGCTCATATACACGTGCATACAT 59.080 43.478 17.22 4.05 0.00 2.29
4945 7423 4.385748 CGCTCATATACACGTGCATACATT 59.614 41.667 17.22 0.00 0.00 2.71
4946 7424 5.443301 CGCTCATATACACGTGCATACATTC 60.443 44.000 17.22 3.09 0.00 2.67
4947 7425 5.405269 GCTCATATACACGTGCATACATTCA 59.595 40.000 17.22 0.00 0.00 2.57
4948 7426 6.616471 GCTCATATACACGTGCATACATTCAC 60.616 42.308 17.22 0.00 0.00 3.18
4949 7427 5.694458 TCATATACACGTGCATACATTCACC 59.306 40.000 17.22 0.00 0.00 4.02
4950 7428 1.448985 ACACGTGCATACATTCACCC 58.551 50.000 17.22 0.00 0.00 4.61
4951 7429 0.732571 CACGTGCATACATTCACCCC 59.267 55.000 0.82 0.00 0.00 4.95
4952 7430 0.618458 ACGTGCATACATTCACCCCT 59.382 50.000 0.00 0.00 0.00 4.79
4953 7431 1.834896 ACGTGCATACATTCACCCCTA 59.165 47.619 0.00 0.00 0.00 3.53
4954 7432 2.438021 ACGTGCATACATTCACCCCTAT 59.562 45.455 0.00 0.00 0.00 2.57
4955 7433 2.807967 CGTGCATACATTCACCCCTATG 59.192 50.000 0.00 0.00 0.00 2.23
4956 7434 3.494223 CGTGCATACATTCACCCCTATGA 60.494 47.826 0.00 0.00 0.00 2.15
4957 7435 4.460263 GTGCATACATTCACCCCTATGAA 58.540 43.478 0.00 0.00 42.62 2.57
4958 7436 4.275936 GTGCATACATTCACCCCTATGAAC 59.724 45.833 0.00 0.00 41.29 3.18
4959 7437 3.498397 GCATACATTCACCCCTATGAACG 59.502 47.826 0.00 0.00 41.29 3.95
4960 7438 2.038387 ACATTCACCCCTATGAACGC 57.962 50.000 0.00 0.00 41.29 4.84
4961 7439 1.280710 ACATTCACCCCTATGAACGCA 59.719 47.619 0.00 0.00 41.29 5.24
4962 7440 1.670811 CATTCACCCCTATGAACGCAC 59.329 52.381 0.00 0.00 41.29 5.34
4963 7441 0.687920 TTCACCCCTATGAACGCACA 59.312 50.000 0.00 0.00 33.62 4.57
4964 7442 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
4965 7443 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
4966 7444 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
4967 7445 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
4968 7446 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
4969 7447 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
4970 7448 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
4971 7449 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
4972 7450 1.710103 ATGAACGCACACACGCACAA 61.710 50.000 0.00 0.00 36.19 3.33
4973 7451 1.932564 GAACGCACACACGCACAAC 60.933 57.895 0.00 0.00 36.19 3.32
4974 7452 3.389727 AACGCACACACGCACAACC 62.390 57.895 0.00 0.00 36.19 3.77
4975 7453 3.572539 CGCACACACGCACAACCT 61.573 61.111 0.00 0.00 0.00 3.50
4976 7454 2.241190 CGCACACACGCACAACCTA 61.241 57.895 0.00 0.00 0.00 3.08
4977 7455 1.565156 CGCACACACGCACAACCTAT 61.565 55.000 0.00 0.00 0.00 2.57
4978 7456 0.591170 GCACACACGCACAACCTATT 59.409 50.000 0.00 0.00 0.00 1.73
4979 7457 1.001815 GCACACACGCACAACCTATTT 60.002 47.619 0.00 0.00 0.00 1.40
4980 7458 2.916111 CACACACGCACAACCTATTTC 58.084 47.619 0.00 0.00 0.00 2.17
4981 7459 2.548057 CACACACGCACAACCTATTTCT 59.452 45.455 0.00 0.00 0.00 2.52
4982 7460 3.743911 CACACACGCACAACCTATTTCTA 59.256 43.478 0.00 0.00 0.00 2.10
4983 7461 4.391830 CACACACGCACAACCTATTTCTAT 59.608 41.667 0.00 0.00 0.00 1.98
4984 7462 5.579119 CACACACGCACAACCTATTTCTATA 59.421 40.000 0.00 0.00 0.00 1.31
4985 7463 6.091577 CACACACGCACAACCTATTTCTATAA 59.908 38.462 0.00 0.00 0.00 0.98
4986 7464 6.312918 ACACACGCACAACCTATTTCTATAAG 59.687 38.462 0.00 0.00 0.00 1.73
4987 7465 5.293569 ACACGCACAACCTATTTCTATAAGC 59.706 40.000 0.00 0.00 0.00 3.09
4988 7466 5.293324 CACGCACAACCTATTTCTATAAGCA 59.707 40.000 0.00 0.00 0.00 3.91
4989 7467 6.017934 CACGCACAACCTATTTCTATAAGCAT 60.018 38.462 0.00 0.00 0.00 3.79
4990 7468 6.202954 ACGCACAACCTATTTCTATAAGCATC 59.797 38.462 0.00 0.00 0.00 3.91
4991 7469 6.425114 CGCACAACCTATTTCTATAAGCATCT 59.575 38.462 0.00 0.00 0.00 2.90
4992 7470 7.041780 CGCACAACCTATTTCTATAAGCATCTT 60.042 37.037 0.00 0.00 0.00 2.40
4993 7471 8.624776 GCACAACCTATTTCTATAAGCATCTTT 58.375 33.333 0.00 0.00 0.00 2.52
4994 7472 9.941664 CACAACCTATTTCTATAAGCATCTTTG 57.058 33.333 0.00 0.00 0.00 2.77
4995 7473 9.905713 ACAACCTATTTCTATAAGCATCTTTGA 57.094 29.630 0.00 0.00 0.00 2.69
5005 7483 8.454106 TCTATAAGCATCTTTGAAAAACTGAGC 58.546 33.333 0.00 0.00 0.00 4.26
5006 7484 4.248691 AGCATCTTTGAAAAACTGAGCC 57.751 40.909 0.00 0.00 0.00 4.70
5007 7485 2.982470 GCATCTTTGAAAAACTGAGCCG 59.018 45.455 0.00 0.00 0.00 5.52
5008 7486 3.568538 CATCTTTGAAAAACTGAGCCGG 58.431 45.455 0.00 0.00 0.00 6.13
5009 7487 1.336755 TCTTTGAAAAACTGAGCCGGC 59.663 47.619 21.89 21.89 0.00 6.13
5010 7488 1.066908 CTTTGAAAAACTGAGCCGGCA 59.933 47.619 31.54 7.98 0.00 5.69
5011 7489 1.327303 TTGAAAAACTGAGCCGGCAT 58.673 45.000 31.54 14.28 0.00 4.40
5012 7490 2.192664 TGAAAAACTGAGCCGGCATA 57.807 45.000 31.54 16.21 0.00 3.14
5013 7491 2.722094 TGAAAAACTGAGCCGGCATAT 58.278 42.857 31.54 8.11 0.00 1.78
5014 7492 3.088532 TGAAAAACTGAGCCGGCATATT 58.911 40.909 31.54 14.37 0.00 1.28
5015 7493 4.265893 TGAAAAACTGAGCCGGCATATTA 58.734 39.130 31.54 8.60 0.00 0.98
5016 7494 4.887071 TGAAAAACTGAGCCGGCATATTAT 59.113 37.500 31.54 6.18 0.00 1.28
5017 7495 5.008613 TGAAAAACTGAGCCGGCATATTATC 59.991 40.000 31.54 16.99 0.00 1.75
5018 7496 4.357918 AAACTGAGCCGGCATATTATCT 57.642 40.909 31.54 4.27 0.00 1.98
5019 7497 4.357918 AACTGAGCCGGCATATTATCTT 57.642 40.909 31.54 3.33 0.00 2.40
5020 7498 3.668447 ACTGAGCCGGCATATTATCTTG 58.332 45.455 31.54 14.73 0.00 3.02
5021 7499 3.324846 ACTGAGCCGGCATATTATCTTGA 59.675 43.478 31.54 0.00 0.00 3.02
5022 7500 4.202357 ACTGAGCCGGCATATTATCTTGAA 60.202 41.667 31.54 0.00 0.00 2.69
5023 7501 4.713553 TGAGCCGGCATATTATCTTGAAA 58.286 39.130 31.54 0.00 0.00 2.69
5024 7502 5.316167 TGAGCCGGCATATTATCTTGAAAT 58.684 37.500 31.54 0.06 0.00 2.17
5025 7503 5.769662 TGAGCCGGCATATTATCTTGAAATT 59.230 36.000 31.54 0.00 0.00 1.82
5026 7504 6.265196 TGAGCCGGCATATTATCTTGAAATTT 59.735 34.615 31.54 0.00 0.00 1.82
5027 7505 7.446931 TGAGCCGGCATATTATCTTGAAATTTA 59.553 33.333 31.54 0.00 0.00 1.40
5028 7506 7.593825 AGCCGGCATATTATCTTGAAATTTAC 58.406 34.615 31.54 0.00 0.00 2.01
5029 7507 7.230510 AGCCGGCATATTATCTTGAAATTTACA 59.769 33.333 31.54 0.00 0.00 2.41
5030 7508 7.865385 GCCGGCATATTATCTTGAAATTTACAA 59.135 33.333 24.80 0.00 0.00 2.41
5031 7509 9.743057 CCGGCATATTATCTTGAAATTTACAAA 57.257 29.630 0.00 0.00 0.00 2.83
5038 7516 9.840427 ATTATCTTGAAATTTACAAAGTCACCG 57.160 29.630 0.00 0.00 0.00 4.94
5039 7517 6.687081 TCTTGAAATTTACAAAGTCACCGT 57.313 33.333 0.00 0.00 0.00 4.83
5040 7518 7.789273 TCTTGAAATTTACAAAGTCACCGTA 57.211 32.000 0.00 0.00 0.00 4.02
5041 7519 7.857569 TCTTGAAATTTACAAAGTCACCGTAG 58.142 34.615 0.00 0.00 0.00 3.51
5053 7531 3.437795 CCGTAGGCACCTCGTCGT 61.438 66.667 0.00 0.00 46.14 4.34
5054 7532 2.099831 CGTAGGCACCTCGTCGTC 59.900 66.667 0.00 0.00 0.00 4.20
5055 7533 2.099831 GTAGGCACCTCGTCGTCG 59.900 66.667 0.00 0.00 38.55 5.12
5056 7534 2.046988 TAGGCACCTCGTCGTCGA 60.047 61.111 4.42 4.42 44.12 4.20
5057 7535 2.393768 TAGGCACCTCGTCGTCGAC 61.394 63.158 15.51 15.51 41.35 4.20
5076 7554 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
5077 7555 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
5078 7556 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
5079 7557 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
5080 7558 1.550976 GAACGTCTCCTCCCACTGAAT 59.449 52.381 0.00 0.00 0.00 2.57
5081 7559 0.898320 ACGTCTCCTCCCACTGAATG 59.102 55.000 0.00 0.00 0.00 2.67
5082 7560 0.460987 CGTCTCCTCCCACTGAATGC 60.461 60.000 0.00 0.00 0.00 3.56
5083 7561 0.615331 GTCTCCTCCCACTGAATGCA 59.385 55.000 0.00 0.00 0.00 3.96
5084 7562 0.615331 TCTCCTCCCACTGAATGCAC 59.385 55.000 0.00 0.00 0.00 4.57
5085 7563 0.325933 CTCCTCCCACTGAATGCACA 59.674 55.000 0.00 0.00 0.00 4.57
5086 7564 0.994247 TCCTCCCACTGAATGCACAT 59.006 50.000 0.00 0.00 0.00 3.21
5087 7565 1.065199 TCCTCCCACTGAATGCACATC 60.065 52.381 0.00 0.00 0.00 3.06
5088 7566 1.012086 CTCCCACTGAATGCACATCG 58.988 55.000 0.00 0.00 0.00 3.84
5089 7567 1.026182 TCCCACTGAATGCACATCGC 61.026 55.000 0.00 0.00 42.89 4.58
5090 7568 1.430632 CCACTGAATGCACATCGCC 59.569 57.895 0.00 0.00 41.33 5.54
5091 7569 1.061411 CACTGAATGCACATCGCCG 59.939 57.895 0.00 0.00 41.33 6.46
5092 7570 2.108514 ACTGAATGCACATCGCCGG 61.109 57.895 0.00 0.00 41.33 6.13
5093 7571 1.815003 CTGAATGCACATCGCCGGA 60.815 57.895 5.05 0.00 41.33 5.14
5094 7572 1.368345 CTGAATGCACATCGCCGGAA 61.368 55.000 5.05 0.00 41.33 4.30
5095 7573 0.957888 TGAATGCACATCGCCGGAAA 60.958 50.000 5.05 0.00 41.33 3.13
5096 7574 0.381801 GAATGCACATCGCCGGAAAT 59.618 50.000 5.05 0.00 41.33 2.17
5097 7575 0.381801 AATGCACATCGCCGGAAATC 59.618 50.000 5.05 0.00 41.33 2.17
5098 7576 1.447317 ATGCACATCGCCGGAAATCC 61.447 55.000 5.05 0.00 41.33 3.01
5099 7577 1.819632 GCACATCGCCGGAAATCCT 60.820 57.895 5.05 0.00 32.94 3.24
5100 7578 0.531974 GCACATCGCCGGAAATCCTA 60.532 55.000 5.05 0.00 32.94 2.94
5101 7579 1.948104 CACATCGCCGGAAATCCTAA 58.052 50.000 5.05 0.00 0.00 2.69
5102 7580 2.285083 CACATCGCCGGAAATCCTAAA 58.715 47.619 5.05 0.00 0.00 1.85
5103 7581 2.680841 CACATCGCCGGAAATCCTAAAA 59.319 45.455 5.05 0.00 0.00 1.52
5104 7582 3.315191 CACATCGCCGGAAATCCTAAAAT 59.685 43.478 5.05 0.00 0.00 1.82
5105 7583 4.513692 CACATCGCCGGAAATCCTAAAATA 59.486 41.667 5.05 0.00 0.00 1.40
5106 7584 5.008217 CACATCGCCGGAAATCCTAAAATAA 59.992 40.000 5.05 0.00 0.00 1.40
5107 7585 5.591067 ACATCGCCGGAAATCCTAAAATAAA 59.409 36.000 5.05 0.00 0.00 1.40
5108 7586 6.264518 ACATCGCCGGAAATCCTAAAATAAAT 59.735 34.615 5.05 0.00 0.00 1.40
5109 7587 6.702716 TCGCCGGAAATCCTAAAATAAATT 57.297 33.333 5.05 0.00 0.00 1.82
5110 7588 6.731164 TCGCCGGAAATCCTAAAATAAATTC 58.269 36.000 5.05 0.00 0.00 2.17
5111 7589 6.319152 TCGCCGGAAATCCTAAAATAAATTCA 59.681 34.615 5.05 0.00 0.00 2.57
5112 7590 6.636850 CGCCGGAAATCCTAAAATAAATTCAG 59.363 38.462 5.05 0.00 0.00 3.02
5113 7591 6.923508 GCCGGAAATCCTAAAATAAATTCAGG 59.076 38.462 5.05 0.00 34.93 3.86
5114 7592 7.201875 GCCGGAAATCCTAAAATAAATTCAGGA 60.202 37.037 5.05 7.91 36.17 3.86
5115 7593 8.691797 CCGGAAATCCTAAAATAAATTCAGGAA 58.308 33.333 0.00 0.00 35.68 3.36
5127 7605 9.669887 AAATAAATTCAGGAATAAATGCAAGCA 57.330 25.926 0.00 0.00 0.00 3.91
5128 7606 9.841295 AATAAATTCAGGAATAAATGCAAGCAT 57.159 25.926 0.86 0.86 38.46 3.79
5129 7607 7.781548 AAATTCAGGAATAAATGCAAGCATC 57.218 32.000 8.14 0.00 35.31 3.91
5130 7608 5.918426 TTCAGGAATAAATGCAAGCATCA 57.082 34.783 8.14 0.00 35.31 3.07
5131 7609 5.509716 TCAGGAATAAATGCAAGCATCAG 57.490 39.130 8.14 0.00 35.31 2.90
5132 7610 4.340097 TCAGGAATAAATGCAAGCATCAGG 59.660 41.667 8.14 0.00 35.31 3.86
5133 7611 4.340097 CAGGAATAAATGCAAGCATCAGGA 59.660 41.667 8.14 0.00 35.31 3.86
5134 7612 5.010719 CAGGAATAAATGCAAGCATCAGGAT 59.989 40.000 8.14 0.00 35.31 3.24
5135 7613 5.601313 AGGAATAAATGCAAGCATCAGGATT 59.399 36.000 8.14 5.84 35.31 3.01
5136 7614 6.099269 AGGAATAAATGCAAGCATCAGGATTT 59.901 34.615 8.14 1.46 38.88 2.17
5137 7615 6.202188 GGAATAAATGCAAGCATCAGGATTTG 59.798 38.462 8.14 0.00 36.62 2.32
5138 7616 4.811969 AAATGCAAGCATCAGGATTTGA 57.188 36.364 8.14 0.00 40.85 2.69
5139 7617 4.811969 AATGCAAGCATCAGGATTTGAA 57.188 36.364 8.14 0.00 39.77 2.69
5140 7618 3.581024 TGCAAGCATCAGGATTTGAAC 57.419 42.857 0.00 0.00 39.77 3.18
5141 7619 2.231964 TGCAAGCATCAGGATTTGAACC 59.768 45.455 0.00 0.00 39.77 3.62
5142 7620 2.417787 GCAAGCATCAGGATTTGAACCC 60.418 50.000 0.00 0.00 39.77 4.11
5143 7621 3.094572 CAAGCATCAGGATTTGAACCCT 58.905 45.455 0.00 0.00 39.77 4.34
5160 7638 0.689623 CCTGATGGGCTGAGGATACC 59.310 60.000 0.00 0.00 37.17 2.73
5161 7639 1.427809 CTGATGGGCTGAGGATACCA 58.572 55.000 0.00 0.00 37.41 3.25
5162 7640 1.983691 CTGATGGGCTGAGGATACCAT 59.016 52.381 0.00 0.00 45.87 3.55
5163 7641 3.176411 CTGATGGGCTGAGGATACCATA 58.824 50.000 0.00 0.00 43.40 2.74
5164 7642 3.176411 TGATGGGCTGAGGATACCATAG 58.824 50.000 0.00 0.00 43.40 2.23
5165 7643 2.795291 TGGGCTGAGGATACCATAGT 57.205 50.000 0.00 0.00 37.17 2.12
5166 7644 2.609747 TGGGCTGAGGATACCATAGTC 58.390 52.381 0.00 0.00 37.17 2.59
5167 7645 1.903183 GGGCTGAGGATACCATAGTCC 59.097 57.143 0.00 0.00 34.64 3.85
5168 7646 1.903183 GGCTGAGGATACCATAGTCCC 59.097 57.143 0.00 0.00 35.00 4.46
5169 7647 1.546476 GCTGAGGATACCATAGTCCCG 59.454 57.143 0.00 0.00 35.00 5.14
5170 7648 1.546476 CTGAGGATACCATAGTCCCGC 59.454 57.143 0.00 0.00 35.00 6.13
5171 7649 1.147191 TGAGGATACCATAGTCCCGCT 59.853 52.381 0.00 0.00 35.00 5.52
5172 7650 2.377531 TGAGGATACCATAGTCCCGCTA 59.622 50.000 0.00 0.00 35.00 4.26
5173 7651 3.181426 TGAGGATACCATAGTCCCGCTAA 60.181 47.826 0.00 0.00 35.00 3.09
5174 7652 3.163467 AGGATACCATAGTCCCGCTAAC 58.837 50.000 0.00 0.00 35.00 2.34
5175 7653 2.233186 GGATACCATAGTCCCGCTAACC 59.767 54.545 0.00 0.00 32.72 2.85
5275 8009 9.936759 GATATATTTTTCTTTTTGGACAACCCA 57.063 29.630 0.00 0.00 44.93 4.51
5279 8013 3.216187 TCTTTTTGGACAACCCATCGA 57.784 42.857 0.00 0.00 46.10 3.59
5280 8014 2.882137 TCTTTTTGGACAACCCATCGAC 59.118 45.455 0.00 0.00 46.10 4.20
5281 8015 1.611519 TTTTGGACAACCCATCGACC 58.388 50.000 0.00 0.00 46.10 4.79
5291 8025 1.068083 CCATCGACCACCGGATGAG 59.932 63.158 9.46 0.00 39.14 2.90
5296 8030 0.595053 CGACCACCGGATGAGAATCG 60.595 60.000 9.46 3.45 33.57 3.34
5318 8052 3.381908 GGATCATAGACCGTCTCAACAGT 59.618 47.826 3.74 0.00 0.00 3.55
5422 8156 2.223386 GCGTTCAAGGCTTTGTAACACA 60.223 45.455 8.56 0.00 35.73 3.72
5463 8197 3.122948 CGAACCGTTTTCTACTGGTCATG 59.877 47.826 0.00 0.00 34.17 3.07
5465 8199 4.877378 ACCGTTTTCTACTGGTCATGTA 57.123 40.909 0.00 0.00 31.05 2.29
5466 8200 5.217978 ACCGTTTTCTACTGGTCATGTAA 57.782 39.130 0.00 0.00 31.05 2.41
5496 8230 5.053145 TGTTTCCATTGCAATGTGGTTTAC 58.947 37.500 31.87 21.19 36.84 2.01
5502 8236 0.388006 GCAATGTGGTTTACGTGCCC 60.388 55.000 0.00 0.00 37.11 5.36
5503 8237 0.242555 CAATGTGGTTTACGTGCCCC 59.757 55.000 0.00 0.00 0.00 5.80
5552 8311 2.455557 TGGGTTATGTTGCAATCCCAG 58.544 47.619 18.37 0.00 39.76 4.45
5569 8328 1.506493 CAGGCTGAACTCTCACACAC 58.494 55.000 9.42 0.00 0.00 3.82
5583 8342 4.295119 ACACGTCCCACACCTCGC 62.295 66.667 0.00 0.00 0.00 5.03
5629 8388 1.517694 CATGCTGCAATTCCACGCC 60.518 57.895 6.36 0.00 0.00 5.68
5637 8396 4.514577 ATTCCACGCCGAGCTCCG 62.515 66.667 8.47 9.56 38.18 4.63
5671 8430 2.045536 CTCAAGCTGCCCCTGTCC 60.046 66.667 0.00 0.00 0.00 4.02
5676 8435 3.376918 GCTGCCCCTGTCCTTTGC 61.377 66.667 0.00 0.00 0.00 3.68
5678 8437 1.531365 CTGCCCCTGTCCTTTGCAA 60.531 57.895 0.00 0.00 0.00 4.08
5691 8450 5.536538 TGTCCTTTGCAATATGGTTTGTGTA 59.463 36.000 0.00 0.00 0.00 2.90
5695 8454 6.294453 CCTTTGCAATATGGTTTGTGTAGTGA 60.294 38.462 0.00 0.00 0.00 3.41
5708 8467 1.818060 TGTAGTGATTGCAACATGGGC 59.182 47.619 0.00 0.49 0.00 5.36
5724 8483 1.002201 TGGGCCATGTTGCAAATCTTG 59.998 47.619 0.00 0.00 0.00 3.02
5727 8486 1.338389 GCCATGTTGCAAATCTTGGCT 60.338 47.619 26.74 0.00 45.32 4.75
5734 8493 1.881973 TGCAAATCTTGGCTGAGACAC 59.118 47.619 0.00 0.00 0.00 3.67
5735 8494 1.881973 GCAAATCTTGGCTGAGACACA 59.118 47.619 0.00 0.00 0.00 3.72
5736 8495 2.351157 GCAAATCTTGGCTGAGACACAC 60.351 50.000 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.243221 CACTCATTCCCCTCCCTCATTT 59.757 50.000 0.00 0.00 0.00 2.32
53 54 2.492088 TCGGTCACTCACTTACTCATGG 59.508 50.000 0.00 0.00 0.00 3.66
60 61 1.540267 GCTCTGTCGGTCACTCACTTA 59.460 52.381 0.00 0.00 0.00 2.24
169 170 5.428184 AGCTGAAACAAATAGCTACTCCT 57.572 39.130 0.00 0.00 45.30 3.69
252 253 1.246737 GCTGGAGTTTGGCAAGAGGG 61.247 60.000 0.00 0.00 0.00 4.30
283 284 1.945394 GGACGAAGGACATCGCTACTA 59.055 52.381 0.00 0.00 46.51 1.82
285 286 0.248949 GGGACGAAGGACATCGCTAC 60.249 60.000 0.00 0.00 46.51 3.58
301 302 3.976654 AGCTATTGGAGATGCTTTAGGGA 59.023 43.478 0.00 0.00 30.96 4.20
307 308 5.990120 AACAAAAGCTATTGGAGATGCTT 57.010 34.783 0.00 0.00 46.11 3.91
329 330 7.309316 CCCGTAAAAAGCATTTAGGGAGTTTTA 60.309 37.037 24.07 0.00 37.28 1.52
354 356 3.954200 TCCCCTAAATTTTACGGACACC 58.046 45.455 0.00 0.00 0.00 4.16
387 389 8.990163 TTTTATAGGAACTGAGAAAACACCTT 57.010 30.769 0.00 0.00 41.52 3.50
417 419 1.886542 GCCCAAAACCACTTTCGAGAT 59.113 47.619 0.00 0.00 0.00 2.75
418 420 1.314730 GCCCAAAACCACTTTCGAGA 58.685 50.000 0.00 0.00 0.00 4.04
422 424 0.249280 CACCGCCCAAAACCACTTTC 60.249 55.000 0.00 0.00 0.00 2.62
446 448 4.695231 CTGTCCGCCGTCGTCGTT 62.695 66.667 0.71 0.00 35.01 3.85
651 653 0.951558 CGTTGTTCAGGGGAAGTTGG 59.048 55.000 0.00 0.00 32.62 3.77
769 773 3.743396 GCATCTTGAGTCGACTTCAGTTT 59.257 43.478 21.08 8.11 0.00 2.66
858 869 2.357154 GGGAAGACCTATGGCACATTGT 60.357 50.000 0.00 0.00 39.05 2.71
883 894 6.515832 TGAGACATTGTGTGCTATACATAGG 58.484 40.000 0.00 0.00 42.24 2.57
1117 1128 3.633116 GTACAGGCGGTGGGTGGT 61.633 66.667 0.00 0.00 0.00 4.16
1182 1193 1.303317 CCCTCCCTTTGGAACACCG 60.303 63.158 0.00 0.00 41.17 4.94
1203 1214 4.960938 TGATCGAATGAACTAATGGAGGG 58.039 43.478 0.00 0.00 0.00 4.30
1233 1244 3.062042 CACAAAGAAATTTCTGCCAGGC 58.938 45.455 21.15 3.66 37.65 4.85
1464 1475 6.689178 ATGTTGCGTTGCTTAATAAGTTTG 57.311 33.333 1.68 0.00 0.00 2.93
1510 1521 4.029520 ACACTAGAAGATCCTGCACATCT 58.970 43.478 0.00 0.00 31.51 2.90
1526 1537 1.269569 TGACGTGAGCACCAACACTAG 60.270 52.381 0.00 0.00 35.23 2.57
1687 1698 4.020573 CAGTACTTCACCTTCACCACCATA 60.021 45.833 0.00 0.00 0.00 2.74
1735 1746 4.731612 CAGTGAGAGCAGCGCGGT 62.732 66.667 4.23 4.23 0.00 5.68
1853 1864 4.336889 GCATGTGTGCCTTAGAGGTATA 57.663 45.455 0.00 0.00 45.76 1.47
1854 1865 3.199880 GCATGTGTGCCTTAGAGGTAT 57.800 47.619 0.00 0.00 45.76 2.73
1856 1867 3.558674 GCATGTGTGCCTTAGAGGT 57.441 52.632 0.00 0.00 45.76 3.85
1905 1921 5.178797 TCCGAAAAATTGACTTGCCAAAAA 58.821 33.333 0.00 0.00 0.00 1.94
1906 1922 4.759782 TCCGAAAAATTGACTTGCCAAAA 58.240 34.783 0.00 0.00 0.00 2.44
1907 1923 4.392921 TCCGAAAAATTGACTTGCCAAA 57.607 36.364 0.00 0.00 0.00 3.28
1920 1936 6.773976 ATCTTAATCCAGCAATCCGAAAAA 57.226 33.333 0.00 0.00 0.00 1.94
1951 1967 3.067833 GAGGAAGAAGAAACAAGGACGG 58.932 50.000 0.00 0.00 0.00 4.79
2060 2076 2.296471 GCTCTAATTAGACAGCGCCCTA 59.704 50.000 11.24 0.00 0.00 3.53
2061 2077 1.069358 GCTCTAATTAGACAGCGCCCT 59.931 52.381 11.24 1.09 0.00 5.19
2286 2307 4.495422 ACAACTGTCGTAATAGAAGGCAG 58.505 43.478 0.00 0.00 0.00 4.85
2338 2379 4.352893 ACCAAAGGAGGCCTAAGAGTTTTA 59.647 41.667 4.42 0.00 31.13 1.52
2391 2432 4.706962 GCCACCTCACTTCCTATGATTTTT 59.293 41.667 0.00 0.00 0.00 1.94
2472 2513 0.991920 AAGGAGGCCTCGATGGAAAA 59.008 50.000 26.36 0.00 38.35 2.29
2473 2514 0.991920 AAAGGAGGCCTCGATGGAAA 59.008 50.000 26.36 0.00 38.35 3.13
2480 2521 0.537371 ACAAACCAAAGGAGGCCTCG 60.537 55.000 26.36 14.50 30.89 4.63
2515 2556 9.560860 TCCTATGCAAATCCTATCCTATAGAAA 57.439 33.333 0.00 0.00 0.00 2.52
2521 2562 9.881773 AAATTTTCCTATGCAAATCCTATCCTA 57.118 29.630 0.00 0.00 0.00 2.94
2542 2583 3.072915 CCAAAGGGCCTCAAAGGAAATTT 59.927 43.478 6.46 0.00 37.67 1.82
2543 2584 2.639347 CCAAAGGGCCTCAAAGGAAATT 59.361 45.455 6.46 0.00 37.67 1.82
2544 2585 2.259917 CCAAAGGGCCTCAAAGGAAAT 58.740 47.619 6.46 0.00 37.67 2.17
2553 2594 3.945640 TCCTATAAACCAAAGGGCCTC 57.054 47.619 6.46 0.00 37.90 4.70
2554 2595 4.546674 CATTCCTATAAACCAAAGGGCCT 58.453 43.478 0.00 0.00 37.90 5.19
2555 2596 3.641436 CCATTCCTATAAACCAAAGGGCC 59.359 47.826 0.00 0.00 37.90 5.80
2602 2643 7.543359 TCTTCCAAAATGTGAAGGATTGATT 57.457 32.000 0.00 0.00 38.76 2.57
2603 2644 7.543359 TTCTTCCAAAATGTGAAGGATTGAT 57.457 32.000 0.00 0.00 38.76 2.57
2604 2645 6.975196 TTCTTCCAAAATGTGAAGGATTGA 57.025 33.333 0.00 0.00 38.76 2.57
2630 2671 8.635765 TTCCATTGAGTCTTAGCTAATGTTTT 57.364 30.769 6.64 0.00 0.00 2.43
2634 2675 8.674263 ATTCTTCCATTGAGTCTTAGCTAATG 57.326 34.615 6.64 1.32 0.00 1.90
2637 2678 7.851228 TGAATTCTTCCATTGAGTCTTAGCTA 58.149 34.615 7.05 0.00 0.00 3.32
2641 2682 9.784531 GGATATGAATTCTTCCATTGAGTCTTA 57.215 33.333 7.05 0.00 0.00 2.10
2642 2683 8.501070 AGGATATGAATTCTTCCATTGAGTCTT 58.499 33.333 18.63 0.30 0.00 3.01
2664 2705 9.976776 AAAGAGATATCATTTGATGCATAGGAT 57.023 29.630 0.00 0.00 36.05 3.24
2666 2707 9.451002 AGAAAGAGATATCATTTGATGCATAGG 57.549 33.333 0.00 0.00 36.05 2.57
2687 2728 8.937884 CATGCATCTCAATTCCTATAGAGAAAG 58.062 37.037 0.00 1.90 40.19 2.62
2691 2732 7.384477 TGACATGCATCTCAATTCCTATAGAG 58.616 38.462 1.73 0.00 0.00 2.43
2692 2733 7.307131 TGACATGCATCTCAATTCCTATAGA 57.693 36.000 1.73 0.00 0.00 1.98
2729 2780 9.753674 AGAAATGTTGTAGGAATAGGAAAATCA 57.246 29.630 0.00 0.00 0.00 2.57
2733 2784 9.847224 GGATAGAAATGTTGTAGGAATAGGAAA 57.153 33.333 0.00 0.00 0.00 3.13
2747 2798 8.336235 TCCTTTGGTTCATAGGATAGAAATGTT 58.664 33.333 3.54 0.00 36.84 2.71
2749 2800 7.446625 CCTCCTTTGGTTCATAGGATAGAAATG 59.553 40.741 7.38 0.00 39.94 2.32
2751 2802 6.634955 GCCTCCTTTGGTTCATAGGATAGAAA 60.635 42.308 7.38 0.00 39.94 2.52
2753 2804 4.348168 GCCTCCTTTGGTTCATAGGATAGA 59.652 45.833 7.38 0.00 39.94 1.98
2771 2822 2.074729 TAGCCTAGACTCAAGCCTCC 57.925 55.000 0.00 0.00 0.00 4.30
2850 2901 5.514500 AGCCCTTTAGTTTGTAGGAATGA 57.486 39.130 0.00 0.00 0.00 2.57
2864 2915 8.201242 AGGAAAAATTTGTATGAAGCCCTTTA 57.799 30.769 0.00 0.00 0.00 1.85
2918 2969 6.010219 CCTCCTTTGGTTTGGAAGAATCTTA 58.990 40.000 0.00 0.00 31.23 2.10
2926 2977 0.560688 AGGCCTCCTTTGGTTTGGAA 59.439 50.000 0.00 0.00 31.23 3.53
2962 3013 1.026718 GGTTGGAGAAGGGACATGCG 61.027 60.000 0.00 0.00 0.00 4.73
2987 3038 6.331061 AGTTATATGAGACTTGAACCACGAC 58.669 40.000 0.00 0.00 0.00 4.34
3023 3075 3.075283 TCCTATGAACCAAAGAAGGCCAA 59.925 43.478 5.01 0.00 0.00 4.52
3024 3076 2.647299 TCCTATGAACCAAAGAAGGCCA 59.353 45.455 5.01 0.00 0.00 5.36
3025 3077 3.366052 TCCTATGAACCAAAGAAGGCC 57.634 47.619 0.00 0.00 0.00 5.19
3026 3078 5.066593 CCTATCCTATGAACCAAAGAAGGC 58.933 45.833 0.00 0.00 0.00 4.35
3027 3079 6.500589 TCCTATCCTATGAACCAAAGAAGG 57.499 41.667 0.00 0.00 0.00 3.46
3028 3080 8.986929 AATTCCTATCCTATGAACCAAAGAAG 57.013 34.615 0.00 0.00 0.00 2.85
3029 3081 9.768215 AAAATTCCTATCCTATGAACCAAAGAA 57.232 29.630 0.00 0.00 0.00 2.52
3068 3120 9.346005 TGCATGTCATATCACTTTCTATGATTT 57.654 29.630 0.00 0.00 36.89 2.17
3069 3121 8.913487 TGCATGTCATATCACTTTCTATGATT 57.087 30.769 0.00 0.00 36.89 2.57
3070 3122 8.947115 CATGCATGTCATATCACTTTCTATGAT 58.053 33.333 18.91 0.00 36.89 2.45
3071 3123 7.935210 ACATGCATGTCATATCACTTTCTATGA 59.065 33.333 26.61 0.00 35.87 2.15
3072 3124 8.095937 ACATGCATGTCATATCACTTTCTATG 57.904 34.615 26.61 0.00 35.87 2.23
3088 3140 8.427276 TCTCTCTATAGAAATTGACATGCATGT 58.573 33.333 31.82 31.82 45.16 3.21
3089 3141 8.828688 TCTCTCTATAGAAATTGACATGCATG 57.171 34.615 25.09 25.09 0.00 4.06
3090 3142 9.842775 TTTCTCTCTATAGAAATTGACATGCAT 57.157 29.630 3.57 0.00 39.86 3.96
3091 3143 9.322773 CTTTCTCTCTATAGAAATTGACATGCA 57.677 33.333 3.57 0.00 42.87 3.96
3092 3144 9.539825 TCTTTCTCTCTATAGAAATTGACATGC 57.460 33.333 3.57 0.00 42.87 4.06
3105 3157 9.486497 GCATCAAATGACATCTTTCTCTCTATA 57.514 33.333 0.00 0.00 0.00 1.31
3106 3158 7.991460 TGCATCAAATGACATCTTTCTCTCTAT 59.009 33.333 0.00 0.00 0.00 1.98
3107 3159 7.333323 TGCATCAAATGACATCTTTCTCTCTA 58.667 34.615 0.00 0.00 0.00 2.43
3108 3160 6.178324 TGCATCAAATGACATCTTTCTCTCT 58.822 36.000 0.00 0.00 0.00 3.10
3109 3161 6.432607 TGCATCAAATGACATCTTTCTCTC 57.567 37.500 0.00 0.00 0.00 3.20
3110 3162 7.228906 CCTATGCATCAAATGACATCTTTCTCT 59.771 37.037 0.19 0.00 32.25 3.10
3111 3163 7.228108 TCCTATGCATCAAATGACATCTTTCTC 59.772 37.037 0.19 0.00 32.25 2.87
3112 3164 7.058525 TCCTATGCATCAAATGACATCTTTCT 58.941 34.615 0.19 0.00 32.25 2.52
3113 3165 7.268199 TCCTATGCATCAAATGACATCTTTC 57.732 36.000 0.19 0.00 32.25 2.62
3114 3166 7.834881 ATCCTATGCATCAAATGACATCTTT 57.165 32.000 0.19 0.00 32.25 2.52
3115 3167 8.957466 CATATCCTATGCATCAAATGACATCTT 58.043 33.333 0.19 0.00 32.25 2.40
3116 3168 8.326529 TCATATCCTATGCATCAAATGACATCT 58.673 33.333 0.19 0.00 32.25 2.90
3117 3169 8.502105 TCATATCCTATGCATCAAATGACATC 57.498 34.615 0.19 0.00 32.25 3.06
3118 3170 9.475620 AATCATATCCTATGCATCAAATGACAT 57.524 29.630 0.19 0.00 33.67 3.06
3119 3171 8.873186 AATCATATCCTATGCATCAAATGACA 57.127 30.769 0.19 0.00 0.00 3.58
3145 3197 8.635765 AACATTAGCCTAGACTCAATGAAAAA 57.364 30.769 12.01 0.00 32.29 1.94
3146 3198 8.635765 AAACATTAGCCTAGACTCAATGAAAA 57.364 30.769 12.01 0.00 32.29 2.29
3147 3199 8.635765 AAAACATTAGCCTAGACTCAATGAAA 57.364 30.769 12.01 0.00 32.29 2.69
3148 3200 8.635765 AAAAACATTAGCCTAGACTCAATGAA 57.364 30.769 12.01 0.00 32.29 2.57
3178 3230 5.376854 AATGAATCCTTCACGTTTTGGAG 57.623 39.130 6.38 0.00 43.48 3.86
3179 3231 4.217550 GGAATGAATCCTTCACGTTTTGGA 59.782 41.667 1.02 3.13 45.56 3.53
3180 3232 4.485163 GGAATGAATCCTTCACGTTTTGG 58.515 43.478 1.02 0.00 45.56 3.28
3221 3273 5.105351 CCCTTTGGTTTGTAGGAATGGATTC 60.105 44.000 0.00 0.00 36.08 2.52
3222 3274 4.777366 CCCTTTGGTTTGTAGGAATGGATT 59.223 41.667 0.00 0.00 0.00 3.01
3223 3275 4.352893 CCCTTTGGTTTGTAGGAATGGAT 58.647 43.478 0.00 0.00 0.00 3.41
3224 3276 3.773560 CCCTTTGGTTTGTAGGAATGGA 58.226 45.455 0.00 0.00 0.00 3.41
3225 3277 2.233676 GCCCTTTGGTTTGTAGGAATGG 59.766 50.000 0.00 0.00 0.00 3.16
3226 3278 3.165071 AGCCCTTTGGTTTGTAGGAATG 58.835 45.455 0.00 0.00 0.00 2.67
3227 3279 3.431415 GAGCCCTTTGGTTTGTAGGAAT 58.569 45.455 0.00 0.00 0.00 3.01
3228 3280 2.490168 GGAGCCCTTTGGTTTGTAGGAA 60.490 50.000 0.00 0.00 0.00 3.36
3229 3281 1.074889 GGAGCCCTTTGGTTTGTAGGA 59.925 52.381 0.00 0.00 0.00 2.94
3230 3282 1.203001 TGGAGCCCTTTGGTTTGTAGG 60.203 52.381 0.00 0.00 0.00 3.18
3231 3283 2.286365 TGGAGCCCTTTGGTTTGTAG 57.714 50.000 0.00 0.00 0.00 2.74
3232 3284 2.757894 TTGGAGCCCTTTGGTTTGTA 57.242 45.000 0.00 0.00 0.00 2.41
3233 3285 1.762370 CTTTGGAGCCCTTTGGTTTGT 59.238 47.619 0.00 0.00 0.00 2.83
3234 3286 1.070601 CCTTTGGAGCCCTTTGGTTTG 59.929 52.381 0.00 0.00 0.00 2.93
3235 3287 1.062505 TCCTTTGGAGCCCTTTGGTTT 60.063 47.619 0.00 0.00 0.00 3.27
3236 3288 0.560688 TCCTTTGGAGCCCTTTGGTT 59.439 50.000 0.00 0.00 0.00 3.67
3237 3289 0.560688 TTCCTTTGGAGCCCTTTGGT 59.439 50.000 0.00 0.00 31.21 3.67
3238 3290 1.942776 ATTCCTTTGGAGCCCTTTGG 58.057 50.000 0.00 0.00 31.21 3.28
3239 3291 4.356405 AAAATTCCTTTGGAGCCCTTTG 57.644 40.909 0.00 0.00 31.21 2.77
3283 3335 8.803235 GGTTTGTAGGATTTTTGTAGGAATTCT 58.197 33.333 5.23 0.00 0.00 2.40
3284 3336 8.581578 TGGTTTGTAGGATTTTTGTAGGAATTC 58.418 33.333 0.00 0.00 0.00 2.17
3285 3337 8.485578 TGGTTTGTAGGATTTTTGTAGGAATT 57.514 30.769 0.00 0.00 0.00 2.17
3286 3338 8.485578 TTGGTTTGTAGGATTTTTGTAGGAAT 57.514 30.769 0.00 0.00 0.00 3.01
3287 3339 7.899648 TTGGTTTGTAGGATTTTTGTAGGAA 57.100 32.000 0.00 0.00 0.00 3.36
3288 3340 7.562088 ACTTTGGTTTGTAGGATTTTTGTAGGA 59.438 33.333 0.00 0.00 0.00 2.94
3289 3341 7.722363 ACTTTGGTTTGTAGGATTTTTGTAGG 58.278 34.615 0.00 0.00 0.00 3.18
3290 3342 9.893305 CTACTTTGGTTTGTAGGATTTTTGTAG 57.107 33.333 0.00 0.00 34.24 2.74
3311 3363 5.318630 TCCGATTAAAACAAAGGCCTACTT 58.681 37.500 5.16 0.00 42.52 2.24
3312 3364 4.913784 TCCGATTAAAACAAAGGCCTACT 58.086 39.130 5.16 0.00 0.00 2.57
3313 3365 5.220989 GGATCCGATTAAAACAAAGGCCTAC 60.221 44.000 5.16 0.00 0.00 3.18
3314 3366 4.885325 GGATCCGATTAAAACAAAGGCCTA 59.115 41.667 5.16 0.00 0.00 3.93
3315 3367 3.699538 GGATCCGATTAAAACAAAGGCCT 59.300 43.478 0.00 0.00 0.00 5.19
3316 3368 3.445805 TGGATCCGATTAAAACAAAGGCC 59.554 43.478 7.39 0.00 0.00 5.19
3317 3369 4.712122 TGGATCCGATTAAAACAAAGGC 57.288 40.909 7.39 0.00 0.00 4.35
3318 3370 6.322491 GTCTTGGATCCGATTAAAACAAAGG 58.678 40.000 7.39 0.00 0.00 3.11
3319 3371 6.072175 TGGTCTTGGATCCGATTAAAACAAAG 60.072 38.462 7.39 1.06 0.00 2.77
3328 3380 3.312890 AGAGATGGTCTTGGATCCGATT 58.687 45.455 7.39 0.00 27.07 3.34
3342 3394 3.393941 AGGCCCTGAATTTCTAGAGATGG 59.606 47.826 0.00 0.00 0.00 3.51
3343 3395 4.102210 TGAGGCCCTGAATTTCTAGAGATG 59.898 45.833 0.00 0.00 0.00 2.90
3414 3678 8.597167 CCCCCGATTATGATGTGATGTATATAT 58.403 37.037 0.00 0.00 0.00 0.86
3431 3695 0.930726 AATTCCAAGGCCCCCGATTA 59.069 50.000 0.00 0.00 0.00 1.75
3436 3700 0.327924 CCAAAAATTCCAAGGCCCCC 59.672 55.000 0.00 0.00 0.00 5.40
3443 3707 3.243367 CGCACAGAGTCCAAAAATTCCAA 60.243 43.478 0.00 0.00 0.00 3.53
3484 3748 2.965716 GATCAGGGCCGTTCATGGGG 62.966 65.000 0.00 0.00 0.00 4.96
3510 3774 1.824230 TCTTTTGCAACAGCACCAACT 59.176 42.857 7.76 0.00 38.15 3.16
3588 3907 8.448615 ACCGCTAACAAATCAACTAATTCTTAC 58.551 33.333 0.00 0.00 0.00 2.34
3606 3925 1.066358 AGCCTACCTTTGACCGCTAAC 60.066 52.381 0.00 0.00 0.00 2.34
3692 4367 1.464734 TGAACACGGCCAAAAACTCA 58.535 45.000 2.24 0.00 0.00 3.41
3733 4408 9.515020 CACACATACACAAAATCAAGTTTAAGT 57.485 29.630 0.00 0.00 0.00 2.24
3925 4600 1.490574 AGAAGATGAGGAACCCCGAG 58.509 55.000 0.00 0.00 37.58 4.63
3931 4606 5.407407 TGAAGGTGTAGAAGATGAGGAAC 57.593 43.478 0.00 0.00 0.00 3.62
4186 4861 2.390225 AGGAGTAGGAGTAGGCCATG 57.610 55.000 5.01 0.00 0.00 3.66
4220 4895 1.195674 GTTGAAGCTCTTCTTGGACGC 59.804 52.381 10.56 0.00 40.14 5.19
4282 4957 1.101635 TGTATCCAGCTCCGAGGTCG 61.102 60.000 0.00 0.00 39.44 4.79
4444 5119 1.020333 CGACCGACTCCGAGTCTTCT 61.020 60.000 23.09 7.83 42.92 2.85
4475 5150 3.488090 GTTGTAGCTCGCCGTGGC 61.488 66.667 0.00 0.00 37.85 5.01
4495 5170 2.819595 CCATGAGGTCAACCGGCG 60.820 66.667 0.00 0.00 42.08 6.46
4637 5312 4.083581 CGAGAGCGACCAAAATTTCAAT 57.916 40.909 0.00 0.00 40.82 2.57
4660 5335 4.954680 CCAACACAACGCACGCGG 62.955 66.667 16.70 0.00 44.69 6.46
4665 5340 2.897846 CCGGTCCAACACAACGCA 60.898 61.111 0.00 0.00 0.00 5.24
4667 5342 3.656045 GGCCGGTCCAACACAACG 61.656 66.667 1.90 0.00 34.01 4.10
4777 5452 6.707440 ATACATCACCTTCACTAGAGTCAG 57.293 41.667 0.00 0.00 0.00 3.51
4850 7328 4.522022 GGATTTCATTTCCATAGCCCAGAG 59.478 45.833 0.00 0.00 33.21 3.35
4859 7337 2.166254 GGTGCACGGATTTCATTTCCAT 59.834 45.455 11.45 0.00 32.45 3.41
4898 7376 8.600625 GCGATTGTATCTGTACTGATGTTAAAA 58.399 33.333 21.69 7.15 0.00 1.52
4899 7377 7.979537 AGCGATTGTATCTGTACTGATGTTAAA 59.020 33.333 21.69 12.22 0.00 1.52
4900 7378 7.489160 AGCGATTGTATCTGTACTGATGTTAA 58.511 34.615 21.69 14.60 0.00 2.01
4901 7379 7.039313 AGCGATTGTATCTGTACTGATGTTA 57.961 36.000 21.69 9.34 0.00 2.41
4902 7380 5.907207 AGCGATTGTATCTGTACTGATGTT 58.093 37.500 21.69 6.82 0.00 2.71
4903 7381 5.067805 TGAGCGATTGTATCTGTACTGATGT 59.932 40.000 21.69 8.04 0.00 3.06
4904 7382 5.523369 TGAGCGATTGTATCTGTACTGATG 58.477 41.667 21.69 7.96 0.00 3.07
4905 7383 5.774498 TGAGCGATTGTATCTGTACTGAT 57.226 39.130 17.96 17.96 0.00 2.90
4906 7384 5.774498 ATGAGCGATTGTATCTGTACTGA 57.226 39.130 4.80 4.80 0.00 3.41
4907 7385 8.237267 TGTATATGAGCGATTGTATCTGTACTG 58.763 37.037 0.00 0.00 0.00 2.74
4908 7386 8.237949 GTGTATATGAGCGATTGTATCTGTACT 58.762 37.037 0.00 0.00 0.00 2.73
4909 7387 7.216505 CGTGTATATGAGCGATTGTATCTGTAC 59.783 40.741 0.00 0.00 0.00 2.90
4910 7388 7.094933 ACGTGTATATGAGCGATTGTATCTGTA 60.095 37.037 0.00 0.00 0.00 2.74
4911 7389 6.086871 CGTGTATATGAGCGATTGTATCTGT 58.913 40.000 0.00 0.00 0.00 3.41
4912 7390 6.032880 CACGTGTATATGAGCGATTGTATCTG 59.967 42.308 7.58 0.00 0.00 2.90
4913 7391 6.086871 CACGTGTATATGAGCGATTGTATCT 58.913 40.000 7.58 0.00 0.00 1.98
4914 7392 5.220043 GCACGTGTATATGAGCGATTGTATC 60.220 44.000 18.38 0.00 0.00 2.24
4915 7393 4.621460 GCACGTGTATATGAGCGATTGTAT 59.379 41.667 18.38 0.00 0.00 2.29
4916 7394 3.978855 GCACGTGTATATGAGCGATTGTA 59.021 43.478 18.38 0.00 0.00 2.41
4917 7395 2.794910 GCACGTGTATATGAGCGATTGT 59.205 45.455 18.38 0.00 0.00 2.71
4918 7396 2.794350 TGCACGTGTATATGAGCGATTG 59.206 45.455 18.38 0.00 32.85 2.67
4919 7397 3.092334 TGCACGTGTATATGAGCGATT 57.908 42.857 18.38 0.00 32.85 3.34
4920 7398 2.793278 TGCACGTGTATATGAGCGAT 57.207 45.000 18.38 0.00 32.85 4.58
4921 7399 2.793278 ATGCACGTGTATATGAGCGA 57.207 45.000 18.03 0.00 32.85 4.93
4922 7400 3.305110 TGTATGCACGTGTATATGAGCG 58.695 45.455 25.81 0.00 32.85 5.03
4923 7401 5.405269 TGAATGTATGCACGTGTATATGAGC 59.595 40.000 25.81 15.09 0.00 4.26
4924 7402 6.128822 GGTGAATGTATGCACGTGTATATGAG 60.129 42.308 25.81 0.00 35.91 2.90
4925 7403 5.694458 GGTGAATGTATGCACGTGTATATGA 59.306 40.000 25.81 17.13 35.91 2.15
4926 7404 5.107104 GGGTGAATGTATGCACGTGTATATG 60.107 44.000 25.81 0.00 35.91 1.78
4927 7405 4.994852 GGGTGAATGTATGCACGTGTATAT 59.005 41.667 25.81 12.84 35.91 0.86
4928 7406 4.373527 GGGTGAATGTATGCACGTGTATA 58.626 43.478 20.58 20.58 35.91 1.47
4929 7407 3.202906 GGGTGAATGTATGCACGTGTAT 58.797 45.455 22.72 22.72 35.91 2.29
4930 7408 2.623535 GGGTGAATGTATGCACGTGTA 58.376 47.619 18.38 14.09 35.91 2.90
4931 7409 1.448985 GGGTGAATGTATGCACGTGT 58.551 50.000 18.38 0.00 35.91 4.49
4932 7410 0.732571 GGGGTGAATGTATGCACGTG 59.267 55.000 12.28 12.28 35.91 4.49
4933 7411 0.618458 AGGGGTGAATGTATGCACGT 59.382 50.000 0.00 0.00 35.91 4.49
4934 7412 2.613026 TAGGGGTGAATGTATGCACG 57.387 50.000 0.00 0.00 35.91 5.34
4935 7413 4.085357 TCATAGGGGTGAATGTATGCAC 57.915 45.455 0.00 0.00 0.00 4.57
4936 7414 4.460263 GTTCATAGGGGTGAATGTATGCA 58.540 43.478 0.00 0.00 39.99 3.96
4937 7415 3.498397 CGTTCATAGGGGTGAATGTATGC 59.502 47.826 0.00 0.00 39.99 3.14
4938 7416 3.498397 GCGTTCATAGGGGTGAATGTATG 59.502 47.826 9.71 0.00 43.66 2.39
4939 7417 3.135712 TGCGTTCATAGGGGTGAATGTAT 59.864 43.478 9.71 0.00 43.66 2.29
4940 7418 2.502130 TGCGTTCATAGGGGTGAATGTA 59.498 45.455 9.71 3.79 43.66 2.29
4941 7419 1.280710 TGCGTTCATAGGGGTGAATGT 59.719 47.619 9.71 0.00 43.66 2.71
4942 7420 1.670811 GTGCGTTCATAGGGGTGAATG 59.329 52.381 4.85 4.85 44.27 2.67
4943 7421 1.280710 TGTGCGTTCATAGGGGTGAAT 59.719 47.619 0.00 0.00 39.99 2.57
4944 7422 0.687920 TGTGCGTTCATAGGGGTGAA 59.312 50.000 0.00 0.00 35.84 3.18
4945 7423 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
4946 7424 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
4947 7425 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
4948 7426 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
4949 7427 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
4950 7428 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
4951 7429 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
4952 7430 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
4953 7431 1.710103 TTGTGCGTGTGTGCGTTCAT 61.710 50.000 0.00 0.00 37.81 2.57
4954 7432 2.391389 TTGTGCGTGTGTGCGTTCA 61.391 52.632 0.00 0.00 37.81 3.18
4955 7433 1.932564 GTTGTGCGTGTGTGCGTTC 60.933 57.895 0.00 0.00 37.81 3.95
4956 7434 2.099446 GTTGTGCGTGTGTGCGTT 59.901 55.556 0.00 0.00 37.81 4.84
4957 7435 2.909614 TAGGTTGTGCGTGTGTGCGT 62.910 55.000 0.00 0.00 37.81 5.24
4958 7436 1.565156 ATAGGTTGTGCGTGTGTGCG 61.565 55.000 0.00 0.00 37.81 5.34
4959 7437 0.591170 AATAGGTTGTGCGTGTGTGC 59.409 50.000 0.00 0.00 0.00 4.57
4960 7438 2.548057 AGAAATAGGTTGTGCGTGTGTG 59.452 45.455 0.00 0.00 0.00 3.82
4961 7439 2.846193 AGAAATAGGTTGTGCGTGTGT 58.154 42.857 0.00 0.00 0.00 3.72
4962 7440 6.656314 TTATAGAAATAGGTTGTGCGTGTG 57.344 37.500 0.00 0.00 0.00 3.82
4963 7441 5.293569 GCTTATAGAAATAGGTTGTGCGTGT 59.706 40.000 0.00 0.00 0.00 4.49
4964 7442 5.293324 TGCTTATAGAAATAGGTTGTGCGTG 59.707 40.000 0.00 0.00 0.00 5.34
4965 7443 5.424757 TGCTTATAGAAATAGGTTGTGCGT 58.575 37.500 0.00 0.00 0.00 5.24
4966 7444 5.984233 TGCTTATAGAAATAGGTTGTGCG 57.016 39.130 0.00 0.00 0.00 5.34
4967 7445 7.736447 AGATGCTTATAGAAATAGGTTGTGC 57.264 36.000 0.00 0.00 0.00 4.57
4968 7446 9.941664 CAAAGATGCTTATAGAAATAGGTTGTG 57.058 33.333 0.00 0.00 0.00 3.33
4969 7447 9.905713 TCAAAGATGCTTATAGAAATAGGTTGT 57.094 29.630 0.00 0.00 0.00 3.32
4979 7457 8.454106 GCTCAGTTTTTCAAAGATGCTTATAGA 58.546 33.333 0.00 0.00 0.00 1.98
4980 7458 7.699812 GGCTCAGTTTTTCAAAGATGCTTATAG 59.300 37.037 0.00 0.00 0.00 1.31
4981 7459 7.538575 GGCTCAGTTTTTCAAAGATGCTTATA 58.461 34.615 0.00 0.00 0.00 0.98
4982 7460 6.393171 GGCTCAGTTTTTCAAAGATGCTTAT 58.607 36.000 0.00 0.00 0.00 1.73
4983 7461 5.562696 CGGCTCAGTTTTTCAAAGATGCTTA 60.563 40.000 0.00 0.00 0.00 3.09
4984 7462 4.625028 GGCTCAGTTTTTCAAAGATGCTT 58.375 39.130 0.00 0.00 0.00 3.91
4985 7463 3.304928 CGGCTCAGTTTTTCAAAGATGCT 60.305 43.478 0.00 0.00 0.00 3.79
4986 7464 2.982470 CGGCTCAGTTTTTCAAAGATGC 59.018 45.455 0.00 0.00 0.00 3.91
4987 7465 3.568538 CCGGCTCAGTTTTTCAAAGATG 58.431 45.455 0.00 0.00 0.00 2.90
4988 7466 2.029918 GCCGGCTCAGTTTTTCAAAGAT 60.030 45.455 22.15 0.00 0.00 2.40
4989 7467 1.336755 GCCGGCTCAGTTTTTCAAAGA 59.663 47.619 22.15 0.00 0.00 2.52
4990 7468 1.066908 TGCCGGCTCAGTTTTTCAAAG 59.933 47.619 29.70 0.00 0.00 2.77
4991 7469 1.107114 TGCCGGCTCAGTTTTTCAAA 58.893 45.000 29.70 0.00 0.00 2.69
4992 7470 1.327303 ATGCCGGCTCAGTTTTTCAA 58.673 45.000 29.70 1.81 0.00 2.69
4993 7471 2.192664 TATGCCGGCTCAGTTTTTCA 57.807 45.000 29.70 2.45 0.00 2.69
4994 7472 3.782889 AATATGCCGGCTCAGTTTTTC 57.217 42.857 29.70 0.00 0.00 2.29
4995 7473 5.133221 AGATAATATGCCGGCTCAGTTTTT 58.867 37.500 29.70 13.33 0.00 1.94
4996 7474 4.718961 AGATAATATGCCGGCTCAGTTTT 58.281 39.130 29.70 14.36 0.00 2.43
4997 7475 4.357918 AGATAATATGCCGGCTCAGTTT 57.642 40.909 29.70 15.74 0.00 2.66
4998 7476 4.067896 CAAGATAATATGCCGGCTCAGTT 58.932 43.478 29.70 18.45 0.00 3.16
4999 7477 3.324846 TCAAGATAATATGCCGGCTCAGT 59.675 43.478 29.70 16.71 0.00 3.41
5000 7478 3.930336 TCAAGATAATATGCCGGCTCAG 58.070 45.455 29.70 12.02 0.00 3.35
5001 7479 4.350368 TTCAAGATAATATGCCGGCTCA 57.650 40.909 29.70 15.91 0.00 4.26
5002 7480 5.886960 ATTTCAAGATAATATGCCGGCTC 57.113 39.130 29.70 15.82 0.00 4.70
5003 7481 6.655078 AAATTTCAAGATAATATGCCGGCT 57.345 33.333 29.70 15.76 0.00 5.52
5004 7482 7.367285 TGTAAATTTCAAGATAATATGCCGGC 58.633 34.615 22.73 22.73 0.00 6.13
5005 7483 9.743057 TTTGTAAATTTCAAGATAATATGCCGG 57.257 29.630 0.00 0.00 0.00 6.13
5012 7490 9.840427 CGGTGACTTTGTAAATTTCAAGATAAT 57.160 29.630 10.26 0.00 0.00 1.28
5013 7491 8.842280 ACGGTGACTTTGTAAATTTCAAGATAA 58.158 29.630 10.26 0.00 0.00 1.75
5014 7492 8.385898 ACGGTGACTTTGTAAATTTCAAGATA 57.614 30.769 10.26 0.00 0.00 1.98
5015 7493 7.272037 ACGGTGACTTTGTAAATTTCAAGAT 57.728 32.000 10.26 2.01 0.00 2.40
5016 7494 6.687081 ACGGTGACTTTGTAAATTTCAAGA 57.313 33.333 10.26 0.00 0.00 3.02
5017 7495 7.075741 CCTACGGTGACTTTGTAAATTTCAAG 58.924 38.462 0.00 0.00 0.00 3.02
5018 7496 6.513720 GCCTACGGTGACTTTGTAAATTTCAA 60.514 38.462 0.00 0.00 0.00 2.69
5019 7497 5.049267 GCCTACGGTGACTTTGTAAATTTCA 60.049 40.000 0.00 0.00 0.00 2.69
5020 7498 5.049267 TGCCTACGGTGACTTTGTAAATTTC 60.049 40.000 0.00 0.00 0.00 2.17
5021 7499 4.822896 TGCCTACGGTGACTTTGTAAATTT 59.177 37.500 0.00 0.00 0.00 1.82
5022 7500 4.214758 GTGCCTACGGTGACTTTGTAAATT 59.785 41.667 0.00 0.00 0.00 1.82
5023 7501 3.749609 GTGCCTACGGTGACTTTGTAAAT 59.250 43.478 0.00 0.00 0.00 1.40
5024 7502 3.132925 GTGCCTACGGTGACTTTGTAAA 58.867 45.455 0.00 0.00 0.00 2.01
5025 7503 2.548493 GGTGCCTACGGTGACTTTGTAA 60.548 50.000 0.00 0.00 0.00 2.41
5026 7504 1.001181 GGTGCCTACGGTGACTTTGTA 59.999 52.381 0.00 0.00 0.00 2.41
5027 7505 0.250166 GGTGCCTACGGTGACTTTGT 60.250 55.000 0.00 0.00 0.00 2.83
5028 7506 0.034896 AGGTGCCTACGGTGACTTTG 59.965 55.000 0.00 0.00 0.00 2.77
5029 7507 0.320697 GAGGTGCCTACGGTGACTTT 59.679 55.000 0.00 0.00 0.00 2.66
5030 7508 1.874345 CGAGGTGCCTACGGTGACTT 61.874 60.000 0.00 0.00 0.00 3.01
5031 7509 2.341101 CGAGGTGCCTACGGTGACT 61.341 63.158 0.00 0.00 0.00 3.41
5032 7510 2.181021 CGAGGTGCCTACGGTGAC 59.819 66.667 0.00 0.00 0.00 3.67
5033 7511 2.282674 ACGAGGTGCCTACGGTGA 60.283 61.111 12.22 0.00 0.00 4.02
5034 7512 2.181021 GACGAGGTGCCTACGGTG 59.819 66.667 12.22 0.00 0.00 4.94
5035 7513 3.437795 CGACGAGGTGCCTACGGT 61.438 66.667 12.22 3.01 0.00 4.83
5036 7514 3.392595 GACGACGAGGTGCCTACGG 62.393 68.421 0.00 1.18 0.00 4.02
5037 7515 2.099831 GACGACGAGGTGCCTACG 59.900 66.667 0.00 9.22 0.00 3.51
5038 7516 2.099831 CGACGACGAGGTGCCTAC 59.900 66.667 0.00 0.00 42.66 3.18
5039 7517 2.046988 TCGACGACGAGGTGCCTA 60.047 61.111 5.75 0.00 43.81 3.93
5060 7538 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
5061 7539 1.276421 CATTCAGTGGGAGGAGACGTT 59.724 52.381 0.00 0.00 0.00 3.99
5062 7540 0.898320 CATTCAGTGGGAGGAGACGT 59.102 55.000 0.00 0.00 0.00 4.34
5063 7541 0.460987 GCATTCAGTGGGAGGAGACG 60.461 60.000 0.00 0.00 0.00 4.18
5064 7542 0.615331 TGCATTCAGTGGGAGGAGAC 59.385 55.000 0.00 0.00 0.00 3.36
5065 7543 0.615331 GTGCATTCAGTGGGAGGAGA 59.385 55.000 0.00 0.00 0.00 3.71
5066 7544 0.325933 TGTGCATTCAGTGGGAGGAG 59.674 55.000 0.00 0.00 0.00 3.69
5067 7545 0.994247 ATGTGCATTCAGTGGGAGGA 59.006 50.000 0.00 0.00 0.00 3.71
5068 7546 1.386533 GATGTGCATTCAGTGGGAGG 58.613 55.000 0.00 0.00 0.00 4.30
5069 7547 1.012086 CGATGTGCATTCAGTGGGAG 58.988 55.000 0.00 0.00 0.00 4.30
5070 7548 1.026182 GCGATGTGCATTCAGTGGGA 61.026 55.000 0.00 0.00 45.45 4.37
5071 7549 1.430632 GCGATGTGCATTCAGTGGG 59.569 57.895 0.00 0.00 45.45 4.61
5081 7559 0.531974 TAGGATTTCCGGCGATGTGC 60.532 55.000 9.30 0.00 42.08 4.57
5082 7560 1.948104 TTAGGATTTCCGGCGATGTG 58.052 50.000 9.30 0.00 42.08 3.21
5083 7561 2.702592 TTTAGGATTTCCGGCGATGT 57.297 45.000 9.30 0.00 42.08 3.06
5084 7562 5.682943 TTATTTTAGGATTTCCGGCGATG 57.317 39.130 9.30 0.00 42.08 3.84
5085 7563 6.894339 ATTTATTTTAGGATTTCCGGCGAT 57.106 33.333 9.30 0.00 42.08 4.58
5086 7564 6.319152 TGAATTTATTTTAGGATTTCCGGCGA 59.681 34.615 9.30 0.00 42.08 5.54
5087 7565 6.500041 TGAATTTATTTTAGGATTTCCGGCG 58.500 36.000 0.00 0.00 42.08 6.46
5088 7566 6.923508 CCTGAATTTATTTTAGGATTTCCGGC 59.076 38.462 0.00 0.00 42.08 6.13
5089 7567 8.232913 TCCTGAATTTATTTTAGGATTTCCGG 57.767 34.615 0.00 0.00 42.08 5.14
5101 7579 9.669887 TGCTTGCATTTATTCCTGAATTTATTT 57.330 25.926 0.00 0.00 32.50 1.40
5102 7580 9.841295 ATGCTTGCATTTATTCCTGAATTTATT 57.159 25.926 1.81 0.00 32.50 1.40
5103 7581 9.485206 GATGCTTGCATTTATTCCTGAATTTAT 57.515 29.630 9.59 0.00 32.50 1.40
5104 7582 8.476447 TGATGCTTGCATTTATTCCTGAATTTA 58.524 29.630 9.59 0.00 32.50 1.40
5105 7583 7.332557 TGATGCTTGCATTTATTCCTGAATTT 58.667 30.769 9.59 0.00 32.50 1.82
5106 7584 6.880484 TGATGCTTGCATTTATTCCTGAATT 58.120 32.000 9.59 0.00 32.50 2.17
5107 7585 6.462487 CCTGATGCTTGCATTTATTCCTGAAT 60.462 38.462 9.59 0.00 34.93 2.57
5108 7586 5.163488 CCTGATGCTTGCATTTATTCCTGAA 60.163 40.000 9.59 0.00 0.00 3.02
5109 7587 4.340097 CCTGATGCTTGCATTTATTCCTGA 59.660 41.667 9.59 0.00 0.00 3.86
5110 7588 4.340097 TCCTGATGCTTGCATTTATTCCTG 59.660 41.667 9.59 0.68 0.00 3.86
5111 7589 4.539726 TCCTGATGCTTGCATTTATTCCT 58.460 39.130 9.59 0.00 0.00 3.36
5112 7590 4.924305 TCCTGATGCTTGCATTTATTCC 57.076 40.909 9.59 0.00 0.00 3.01
5113 7591 6.982141 TCAAATCCTGATGCTTGCATTTATTC 59.018 34.615 9.59 0.00 0.00 1.75
5114 7592 6.880484 TCAAATCCTGATGCTTGCATTTATT 58.120 32.000 9.59 5.10 0.00 1.40
5115 7593 6.474140 TCAAATCCTGATGCTTGCATTTAT 57.526 33.333 9.59 0.00 0.00 1.40
5116 7594 5.918426 TCAAATCCTGATGCTTGCATTTA 57.082 34.783 9.59 2.05 0.00 1.40
5117 7595 4.811969 TCAAATCCTGATGCTTGCATTT 57.188 36.364 9.59 0.00 0.00 2.32
5118 7596 4.501071 GTTCAAATCCTGATGCTTGCATT 58.499 39.130 9.59 0.00 32.78 3.56
5119 7597 3.118884 GGTTCAAATCCTGATGCTTGCAT 60.119 43.478 7.91 7.91 32.78 3.96
5120 7598 2.231964 GGTTCAAATCCTGATGCTTGCA 59.768 45.455 0.00 0.00 32.78 4.08
5121 7599 2.417787 GGGTTCAAATCCTGATGCTTGC 60.418 50.000 0.00 0.00 32.78 4.01
5122 7600 3.094572 AGGGTTCAAATCCTGATGCTTG 58.905 45.455 0.00 0.00 38.36 4.01
5123 7601 3.463048 AGGGTTCAAATCCTGATGCTT 57.537 42.857 0.00 0.00 38.36 3.91
5141 7619 0.689623 GGTATCCTCAGCCCATCAGG 59.310 60.000 0.00 0.00 39.47 3.86
5142 7620 1.427809 TGGTATCCTCAGCCCATCAG 58.572 55.000 0.00 0.00 0.00 2.90
5143 7621 2.123018 ATGGTATCCTCAGCCCATCA 57.877 50.000 0.00 0.00 32.20 3.07
5144 7622 3.177228 ACTATGGTATCCTCAGCCCATC 58.823 50.000 0.00 0.00 38.58 3.51
5145 7623 3.177228 GACTATGGTATCCTCAGCCCAT 58.823 50.000 0.00 0.00 40.66 4.00
5146 7624 2.609747 GACTATGGTATCCTCAGCCCA 58.390 52.381 0.00 0.00 0.00 5.36
5147 7625 1.903183 GGACTATGGTATCCTCAGCCC 59.097 57.143 0.00 0.00 31.75 5.19
5148 7626 1.903183 GGGACTATGGTATCCTCAGCC 59.097 57.143 0.00 0.00 35.15 4.85
5149 7627 1.546476 CGGGACTATGGTATCCTCAGC 59.454 57.143 0.00 0.00 35.15 4.26
5150 7628 1.546476 GCGGGACTATGGTATCCTCAG 59.454 57.143 0.00 0.00 35.15 3.35
5151 7629 1.147191 AGCGGGACTATGGTATCCTCA 59.853 52.381 0.00 0.00 35.15 3.86
5152 7630 1.926108 AGCGGGACTATGGTATCCTC 58.074 55.000 0.00 0.00 35.15 3.71
5153 7631 3.163467 GTTAGCGGGACTATGGTATCCT 58.837 50.000 0.00 0.00 35.15 3.24
5154 7632 2.233186 GGTTAGCGGGACTATGGTATCC 59.767 54.545 0.00 0.00 0.00 2.59
5155 7633 2.895404 TGGTTAGCGGGACTATGGTATC 59.105 50.000 0.00 0.00 0.00 2.24
5156 7634 2.966915 TGGTTAGCGGGACTATGGTAT 58.033 47.619 0.00 0.00 0.00 2.73
5157 7635 2.457813 TGGTTAGCGGGACTATGGTA 57.542 50.000 0.00 0.00 0.00 3.25
5158 7636 1.416401 CATGGTTAGCGGGACTATGGT 59.584 52.381 5.88 0.00 33.78 3.55
5159 7637 1.416401 ACATGGTTAGCGGGACTATGG 59.584 52.381 14.40 2.23 39.45 2.74
5160 7638 2.910688 ACATGGTTAGCGGGACTATG 57.089 50.000 0.00 10.36 40.53 2.23
5161 7639 5.562298 AAATACATGGTTAGCGGGACTAT 57.438 39.130 0.00 0.00 0.00 2.12
5162 7640 5.011329 CCTAAATACATGGTTAGCGGGACTA 59.989 44.000 0.00 0.00 0.00 2.59
5163 7641 3.926058 AAATACATGGTTAGCGGGACT 57.074 42.857 0.00 0.00 0.00 3.85
5164 7642 4.062991 CCTAAATACATGGTTAGCGGGAC 58.937 47.826 0.00 0.00 0.00 4.46
5165 7643 3.071892 CCCTAAATACATGGTTAGCGGGA 59.928 47.826 0.00 0.00 0.00 5.14
5166 7644 3.408634 CCCTAAATACATGGTTAGCGGG 58.591 50.000 0.00 0.00 0.00 6.13
5167 7645 3.181448 ACCCCTAAATACATGGTTAGCGG 60.181 47.826 12.02 12.02 33.34 5.52
5168 7646 4.081322 ACCCCTAAATACATGGTTAGCG 57.919 45.455 0.00 0.00 0.00 4.26
5169 7647 5.691896 AGAACCCCTAAATACATGGTTAGC 58.308 41.667 0.00 0.00 39.32 3.09
5170 7648 9.862149 AAATAGAACCCCTAAATACATGGTTAG 57.138 33.333 0.00 2.09 39.32 2.34
5171 7649 9.856162 GAAATAGAACCCCTAAATACATGGTTA 57.144 33.333 0.00 0.00 39.32 2.85
5172 7650 8.566109 AGAAATAGAACCCCTAAATACATGGTT 58.434 33.333 0.00 0.00 41.81 3.67
5173 7651 8.114301 AGAAATAGAACCCCTAAATACATGGT 57.886 34.615 0.00 0.00 0.00 3.55
5174 7652 8.850156 CAAGAAATAGAACCCCTAAATACATGG 58.150 37.037 0.00 0.00 0.00 3.66
5175 7653 9.627123 TCAAGAAATAGAACCCCTAAATACATG 57.373 33.333 0.00 0.00 0.00 3.21
5217 7695 5.576447 ACCCCTAAATAAAACGCATCAAG 57.424 39.130 0.00 0.00 0.00 3.02
5220 7698 5.830000 AGAACCCCTAAATAAAACGCATC 57.170 39.130 0.00 0.00 0.00 3.91
5222 7700 6.479660 CGTATAGAACCCCTAAATAAAACGCA 59.520 38.462 0.00 0.00 0.00 5.24
5223 7701 6.479990 ACGTATAGAACCCCTAAATAAAACGC 59.520 38.462 0.00 0.00 0.00 4.84
5225 7703 8.947055 TCACGTATAGAACCCCTAAATAAAAC 57.053 34.615 0.00 0.00 0.00 2.43
5268 8002 2.345991 CGGTGGTCGATGGGTTGT 59.654 61.111 0.00 0.00 42.43 3.32
5270 8004 1.993391 ATCCGGTGGTCGATGGGTT 60.993 57.895 0.00 0.00 42.43 4.11
5275 8009 1.341531 GATTCTCATCCGGTGGTCGAT 59.658 52.381 0.00 0.00 42.43 3.59
5279 8013 0.686441 TCCGATTCTCATCCGGTGGT 60.686 55.000 0.00 0.00 43.40 4.16
5280 8014 0.681733 ATCCGATTCTCATCCGGTGG 59.318 55.000 0.00 0.00 43.40 4.61
5281 8015 1.341209 TGATCCGATTCTCATCCGGTG 59.659 52.381 0.00 0.00 43.40 4.94
5296 8030 3.381908 ACTGTTGAGACGGTCTATGATCC 59.618 47.826 11.27 0.00 41.55 3.36
5318 8052 4.402528 CCACGGGCCATCCAACGA 62.403 66.667 4.39 0.00 34.36 3.85
5347 8081 0.251341 AACTGGCGCTGGGAAAGATT 60.251 50.000 7.64 0.00 0.00 2.40
5437 8171 3.006110 ACCAGTAGAAAACGGTTCGATGA 59.994 43.478 0.00 0.00 33.13 2.92
5474 8208 4.149747 CGTAAACCACATTGCAATGGAAAC 59.850 41.667 35.85 23.77 40.70 2.78
5479 8213 2.408032 GCACGTAAACCACATTGCAATG 59.592 45.455 32.74 32.74 42.10 2.82
5487 8221 2.113562 GGGGGCACGTAAACCACA 59.886 61.111 6.09 0.00 0.00 4.17
5506 8240 1.450312 GTCGCAACATGAGAGGGGG 60.450 63.158 0.00 0.00 0.00 5.40
5507 8241 0.742281 CAGTCGCAACATGAGAGGGG 60.742 60.000 0.00 0.00 0.00 4.79
5508 8242 1.364626 GCAGTCGCAACATGAGAGGG 61.365 60.000 0.00 0.00 38.36 4.30
5509 8243 2.084844 GCAGTCGCAACATGAGAGG 58.915 57.895 0.00 0.00 38.36 3.69
5552 8311 0.249489 ACGTGTGTGAGAGTTCAGCC 60.249 55.000 0.00 0.00 32.98 4.85
5583 8342 2.549754 GTCACAAAGGACATGACAGTGG 59.450 50.000 0.00 0.00 41.94 4.00
5585 8344 3.558931 TGTCACAAAGGACATGACAGT 57.441 42.857 0.00 0.00 45.89 3.55
5629 8388 0.508641 CTTGTTTGTGTCGGAGCTCG 59.491 55.000 7.83 3.33 40.90 5.03
5637 8396 0.317020 GAGGCGTGCTTGTTTGTGTC 60.317 55.000 0.00 0.00 0.00 3.67
5667 8426 4.343526 ACACAAACCATATTGCAAAGGACA 59.656 37.500 19.13 0.00 33.52 4.02
5671 8430 6.676950 TCACTACACAAACCATATTGCAAAG 58.323 36.000 1.71 0.00 33.52 2.77
5676 8435 6.619744 TGCAATCACTACACAAACCATATTG 58.380 36.000 0.00 0.00 36.37 1.90
5678 8437 6.208402 TGTTGCAATCACTACACAAACCATAT 59.792 34.615 0.59 0.00 0.00 1.78
5691 8450 0.542467 TGGCCCATGTTGCAATCACT 60.542 50.000 0.59 0.00 0.00 3.41
5708 8467 2.028839 TCAGCCAAGATTTGCAACATGG 60.029 45.455 0.00 6.63 0.00 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.