Multiple sequence alignment - TraesCS4A01G190100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G190100 chr4A 100.000 4396 0 0 1 4396 468751522 468755917 0.000000e+00 8118.0
1 TraesCS4A01G190100 chr4A 98.319 119 2 0 2650 2768 468754055 468754173 4.460000e-50 209.0
2 TraesCS4A01G190100 chr4A 98.319 119 2 0 2534 2652 468754171 468754289 4.460000e-50 209.0
3 TraesCS4A01G190100 chr4A 80.392 204 32 7 2579 2778 468754299 468754100 9.850000e-32 148.0
4 TraesCS4A01G190100 chr4A 90.476 84 8 0 2695 2778 468754299 468754216 1.290000e-20 111.0
5 TraesCS4A01G190100 chr4A 96.429 56 2 0 4341 4396 85575363 85575418 4.680000e-15 93.5
6 TraesCS4A01G190100 chr4A 100.000 44 0 0 2599 2642 468754163 468754120 1.010000e-11 82.4
7 TraesCS4A01G190100 chr4A 87.302 63 7 1 571 633 664183320 664183259 2.190000e-08 71.3
8 TraesCS4A01G190100 chr4D 95.796 1998 42 15 660 2652 107440257 107438297 0.000000e+00 3186.0
9 TraesCS4A01G190100 chr4D 96.960 1217 26 3 2650 3859 107438412 107437200 0.000000e+00 2032.0
10 TraesCS4A01G190100 chr4D 86.145 498 58 6 1 489 107441366 107440871 1.080000e-145 527.0
11 TraesCS4A01G190100 chr4D 88.000 325 27 3 4021 4345 107437022 107436710 1.490000e-99 374.0
12 TraesCS4A01G190100 chr4D 87.603 121 6 4 3879 3995 107437109 107436994 9.920000e-27 132.0
13 TraesCS4A01G190100 chr4D 82.456 114 12 7 3822 3927 502404862 502404749 4.680000e-15 93.5
14 TraesCS4A01G190100 chr4B 93.207 1634 71 26 498 2103 169582500 169584121 0.000000e+00 2366.0
15 TraesCS4A01G190100 chr4B 96.758 1172 29 3 2735 3899 169591059 169592228 0.000000e+00 1945.0
16 TraesCS4A01G190100 chr4B 96.404 445 13 2 2138 2579 169590590 169591034 0.000000e+00 730.0
17 TraesCS4A01G190100 chr4B 88.306 496 43 11 1 486 169581353 169581843 8.200000e-162 580.0
18 TraesCS4A01G190100 chr4B 87.435 191 15 1 4021 4211 169592428 169592609 1.240000e-50 211.0
19 TraesCS4A01G190100 chr4B 85.859 99 6 3 3901 3995 169592362 169592456 1.010000e-16 99.0
20 TraesCS4A01G190100 chr4B 95.652 46 2 0 2650 2695 169590989 169591034 1.700000e-09 75.0
21 TraesCS4A01G190100 chr4B 97.059 34 0 1 2619 2652 169591059 169591091 6.140000e-04 56.5
22 TraesCS4A01G190100 chr5D 82.819 227 31 5 4123 4348 229153060 229152841 3.470000e-46 196.0
23 TraesCS4A01G190100 chr5D 76.606 218 38 9 4134 4345 546915661 546915871 1.670000e-19 108.0
24 TraesCS4A01G190100 chr7D 81.579 228 36 6 4120 4345 555059204 555059427 2.700000e-42 183.0
25 TraesCS4A01G190100 chr7D 85.106 94 4 2 2695 2778 506007045 506006952 2.180000e-13 87.9
26 TraesCS4A01G190100 chr7D 82.474 97 13 4 4301 4396 75315257 75315350 1.010000e-11 82.4
27 TraesCS4A01G190100 chr7D 100.000 28 0 0 634 661 580231144 580231171 8.000000e-03 52.8
28 TraesCS4A01G190100 chr6D 81.277 235 35 9 4119 4350 472496021 472495793 9.710000e-42 182.0
29 TraesCS4A01G190100 chr2D 81.481 216 31 8 4121 4334 624184916 624185124 7.560000e-38 169.0
30 TraesCS4A01G190100 chr2D 80.531 226 37 6 4123 4347 569200942 569200723 2.720000e-37 167.0
31 TraesCS4A01G190100 chr2D 80.000 215 37 5 4123 4337 553759932 553760140 2.120000e-33 154.0
32 TraesCS4A01G190100 chr2D 88.095 126 10 4 4124 4249 5765646 5765766 1.270000e-30 145.0
33 TraesCS4A01G190100 chr2D 96.364 55 2 0 4342 4396 202604401 202604455 1.680000e-14 91.6
34 TraesCS4A01G190100 chr2D 91.071 56 3 2 501 555 100188257 100188203 1.700000e-09 75.0
35 TraesCS4A01G190100 chr2D 86.765 68 8 1 565 632 118366730 118366664 1.700000e-09 75.0
36 TraesCS4A01G190100 chr2D 95.556 45 1 1 2697 2740 476352591 476352635 2.190000e-08 71.3
37 TraesCS4A01G190100 chr2D 93.333 45 2 1 2581 2624 476352591 476352635 1.020000e-06 65.8
38 TraesCS4A01G190100 chr2D 97.059 34 0 1 2688 2720 425745455 425745488 6.140000e-04 56.5
39 TraesCS4A01G190100 chr3A 80.263 228 32 12 4123 4347 699522431 699522648 4.550000e-35 159.0
40 TraesCS4A01G190100 chr3A 75.000 236 49 9 4114 4345 484109926 484110155 2.800000e-17 100.0
41 TraesCS4A01G190100 chr3A 96.429 56 1 1 4341 4396 518488430 518488484 1.680000e-14 91.6
42 TraesCS4A01G190100 chr6A 80.093 216 37 5 4133 4348 556746951 556746742 5.890000e-34 156.0
43 TraesCS4A01G190100 chr6A 88.136 59 6 1 571 629 539867973 539868030 7.890000e-08 69.4
44 TraesCS4A01G190100 chr5B 84.426 122 11 6 3818 3931 38365241 38365120 3.590000e-21 113.0
45 TraesCS4A01G190100 chr5B 86.813 91 8 4 2688 2778 541337658 541337744 1.010000e-16 99.0
46 TraesCS4A01G190100 chr5B 100.000 52 0 0 4345 4396 687319154 687319103 3.620000e-16 97.1
47 TraesCS4A01G190100 chr5B 90.000 60 6 0 498 557 383538790 383538849 1.310000e-10 78.7
48 TraesCS4A01G190100 chr5B 88.136 59 6 1 571 629 595288843 595288786 7.890000e-08 69.4
49 TraesCS4A01G190100 chr5A 87.629 97 12 0 4120 4216 475529269 475529365 3.590000e-21 113.0
50 TraesCS4A01G190100 chr5A 94.828 58 3 0 4339 4396 646990216 646990159 1.680000e-14 91.6
51 TraesCS4A01G190100 chr5A 92.453 53 3 1 501 552 35734659 35734711 1.700000e-09 75.0
52 TraesCS4A01G190100 chr5A 88.333 60 5 2 496 553 585396149 585396208 2.190000e-08 71.3
53 TraesCS4A01G190100 chr7B 84.211 114 10 6 3822 3927 712100750 712100637 2.160000e-18 104.0
54 TraesCS4A01G190100 chr7B 83.168 101 15 2 4247 4347 715717031 715716933 1.680000e-14 91.6
55 TraesCS4A01G190100 chr3B 81.890 127 13 8 3807 3924 679712642 679712767 1.010000e-16 99.0
56 TraesCS4A01G190100 chr3B 82.645 121 11 3 3814 3924 740547460 740547580 1.010000e-16 99.0
57 TraesCS4A01G190100 chr3B 81.967 122 14 4 3818 3931 711182522 711182643 3.620000e-16 97.1
58 TraesCS4A01G190100 chr3B 90.000 60 6 0 498 557 757283160 757283101 1.310000e-10 78.7
59 TraesCS4A01G190100 chr3B 85.507 69 6 2 561 629 226081162 226081226 7.890000e-08 69.4
60 TraesCS4A01G190100 chr3B 89.091 55 2 4 2694 2748 685661501 685661451 1.020000e-06 65.8
61 TraesCS4A01G190100 chr2B 82.759 116 13 5 3816 3924 730616994 730616879 3.620000e-16 97.1
62 TraesCS4A01G190100 chr2B 81.522 92 7 2 2697 2778 557234812 557234903 2.840000e-07 67.6
63 TraesCS4A01G190100 chr2B 91.111 45 3 1 2581 2624 557234812 557234856 4.750000e-05 60.2
64 TraesCS4A01G190100 chr2A 98.113 53 1 0 4344 4396 144951243 144951295 4.680000e-15 93.5
65 TraesCS4A01G190100 chr2A 89.474 57 4 2 497 552 17847399 17847454 2.190000e-08 71.3
66 TraesCS4A01G190100 chr1A 93.548 62 2 2 4337 4396 572331710 572331649 1.680000e-14 91.6
67 TraesCS4A01G190100 chr1A 87.302 63 7 1 491 553 285535857 285535796 2.190000e-08 71.3
68 TraesCS4A01G190100 chr1B 81.739 115 13 3 3822 3928 10078770 10078656 6.060000e-14 89.8
69 TraesCS4A01G190100 chr1B 91.228 57 4 1 572 628 666843755 666843810 4.710000e-10 76.8
70 TraesCS4A01G190100 chr1B 94.737 38 1 1 2690 2727 642955859 642955823 1.710000e-04 58.4
71 TraesCS4A01G190100 chr7A 90.769 65 4 1 4334 4396 651093218 651093282 7.830000e-13 86.1
72 TraesCS4A01G190100 chr7A 87.500 64 6 2 501 562 571811637 571811700 6.100000e-09 73.1
73 TraesCS4A01G190100 chr7A 90.741 54 5 0 498 551 692337003 692337056 6.100000e-09 73.1
74 TraesCS4A01G190100 chr7A 88.462 52 2 4 2690 2740 424317079 424317127 4.750000e-05 60.2
75 TraesCS4A01G190100 chr1D 86.364 66 8 1 564 629 402329909 402329973 2.190000e-08 71.3
76 TraesCS4A01G190100 chr1D 88.136 59 6 1 571 629 322271393 322271336 7.890000e-08 69.4
77 TraesCS4A01G190100 chr3D 86.885 61 7 1 569 629 524177796 524177855 2.840000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G190100 chr4A 468751522 468755917 4395 False 2845.333333 8118 98.879333 1 4396 3 chr4A.!!$F2 4395
1 TraesCS4A01G190100 chr4D 107436710 107441366 4656 True 1250.200000 3186 90.900800 1 4345 5 chr4D.!!$R2 4344
2 TraesCS4A01G190100 chr4B 169581353 169584121 2768 False 1473.000000 2366 90.756500 1 2103 2 chr4B.!!$F1 2102
3 TraesCS4A01G190100 chr4B 169590590 169592609 2019 False 519.416667 1945 93.194500 2138 4211 6 chr4B.!!$F2 2073

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 1614 0.033894 ACCACACGGAAAACCCAACT 60.034 50.0 0.00 0.0 35.59 3.16 F
1494 2194 0.904865 TCCTGGCATCCTCGTCAGTT 60.905 55.0 0.00 0.0 0.00 3.16 F
2660 3364 0.249120 TGTTGTGGGATCGCTGGTAG 59.751 55.0 11.46 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1855 2555 0.179004 AACCCGGCTGTGTCATTCAA 60.179 50.0 0.00 0.0 0.0 2.69 R
3089 3803 0.108615 AAGGGAGCTCAATGTCGTCG 60.109 55.0 17.19 0.0 0.0 5.12 R
3996 4854 0.756294 TGGACCTTTCTTGAGACGCA 59.244 50.0 0.00 0.0 0.0 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.870971 ATTTAAGTGGCAAAAGAAGTACGA 57.129 33.333 0.00 0.00 0.00 3.43
28 29 4.024048 AGTGGCAAAAGAAGTACGACAATG 60.024 41.667 0.00 0.00 0.00 2.82
63 64 2.028930 AGTACTTGAGCCGACAAAGGAG 60.029 50.000 0.00 0.00 0.00 3.69
82 83 3.956848 GGAGCAATAGGAAAAGGCTTCAT 59.043 43.478 0.00 0.00 34.44 2.57
109 112 7.714703 ACGACTTAAGAAGAACACTTAGACTT 58.285 34.615 10.09 0.00 32.59 3.01
155 158 2.668144 TTAACAACCCCCAAGTCTGG 57.332 50.000 0.00 0.00 43.10 3.86
221 224 9.971922 AAGGAGAAAAACATCTTTATTCAACAG 57.028 29.630 0.00 0.00 0.00 3.16
244 247 7.712639 ACAGATATACAGCATGACCAAACTAAG 59.287 37.037 0.00 0.00 39.69 2.18
245 248 7.712639 CAGATATACAGCATGACCAAACTAAGT 59.287 37.037 0.00 0.00 39.69 2.24
290 293 3.831715 AAGCATGAAAACGACTTAGCC 57.168 42.857 0.00 0.00 0.00 3.93
299 302 5.931146 TGAAAACGACTTAGCCGGTTTTATA 59.069 36.000 5.33 0.00 45.50 0.98
300 303 6.594937 TGAAAACGACTTAGCCGGTTTTATAT 59.405 34.615 5.33 0.00 45.50 0.86
303 306 5.663456 ACGACTTAGCCGGTTTTATATTCA 58.337 37.500 1.90 0.00 0.00 2.57
304 307 6.285990 ACGACTTAGCCGGTTTTATATTCAT 58.714 36.000 1.90 0.00 0.00 2.57
308 311 7.511268 ACTTAGCCGGTTTTATATTCATGGTA 58.489 34.615 1.90 0.00 0.00 3.25
331 334 4.415332 GACGCGGTCGAGGCTTGA 62.415 66.667 12.47 0.00 39.41 3.02
387 390 6.608808 CCATCCATTTCCTCCTTCAAATAACT 59.391 38.462 0.00 0.00 0.00 2.24
398 401 8.265055 CCTCCTTCAAATAACTACCACTATTCA 58.735 37.037 0.00 0.00 0.00 2.57
413 423 3.623060 ACTATTCATTTTGAGACGCGCAT 59.377 39.130 5.73 0.00 0.00 4.73
435 445 0.615850 CTTTCTCCCTCCTCCCACAC 59.384 60.000 0.00 0.00 0.00 3.82
447 457 1.380515 CCCACACACCACCAACCAA 60.381 57.895 0.00 0.00 0.00 3.67
459 469 1.269936 ACCAACCAAACCGTCTACTCG 60.270 52.381 0.00 0.00 0.00 4.18
461 471 0.390124 AACCAAACCGTCTACTCGCA 59.610 50.000 0.00 0.00 0.00 5.10
465 475 1.135083 CAAACCGTCTACTCGCATCCT 60.135 52.381 0.00 0.00 0.00 3.24
467 477 1.280142 CCGTCTACTCGCATCCTCG 59.720 63.158 0.00 0.00 0.00 4.63
470 480 0.592754 GTCTACTCGCATCCTCGTGC 60.593 60.000 0.00 0.00 41.65 5.34
489 499 2.503546 GCTAGAGGTGCTCCTGCC 59.496 66.667 13.11 0.00 45.24 4.85
490 500 2.362369 GCTAGAGGTGCTCCTGCCA 61.362 63.158 13.11 0.00 45.24 4.92
491 501 1.519719 CTAGAGGTGCTCCTGCCAC 59.480 63.158 13.11 0.00 45.24 5.01
493 503 1.544825 TAGAGGTGCTCCTGCCACAC 61.545 60.000 13.11 0.00 45.24 3.82
494 504 2.851102 AGGTGCTCCTGCCACACT 60.851 61.111 6.51 0.00 43.33 3.55
495 505 2.113986 GGTGCTCCTGCCACACTT 59.886 61.111 0.00 0.00 38.71 3.16
508 1167 6.014070 TCCTGCCACACTTAGACTTTAATGTA 60.014 38.462 0.00 0.00 0.00 2.29
509 1168 6.653320 CCTGCCACACTTAGACTTTAATGTAA 59.347 38.462 0.00 0.00 0.00 2.41
579 1239 4.412528 AGAGTTGTTTTCAGGTACTCCCTT 59.587 41.667 0.00 0.00 42.73 3.95
697 1389 8.921205 ACTAAAAGGACTTATATTTAGGAGCGA 58.079 33.333 8.47 0.00 38.86 4.93
698 1390 9.413048 CTAAAAGGACTTATATTTAGGAGCGAG 57.587 37.037 0.00 0.00 33.69 5.03
699 1391 7.598759 AAAGGACTTATATTTAGGAGCGAGA 57.401 36.000 0.00 0.00 0.00 4.04
700 1392 6.827586 AGGACTTATATTTAGGAGCGAGAG 57.172 41.667 0.00 0.00 0.00 3.20
701 1393 6.308566 AGGACTTATATTTAGGAGCGAGAGT 58.691 40.000 0.00 0.00 0.00 3.24
728 1420 0.393820 TTTTGAGCGGTAGGAACGGT 59.606 50.000 0.00 0.00 45.51 4.83
731 1423 2.360350 AGCGGTAGGAACGGTCGA 60.360 61.111 0.00 0.00 37.53 4.20
732 1424 1.926511 GAGCGGTAGGAACGGTCGAA 61.927 60.000 0.00 0.00 46.62 3.71
733 1425 1.803117 GCGGTAGGAACGGTCGAAC 60.803 63.158 0.00 0.00 0.00 3.95
734 1426 1.512734 CGGTAGGAACGGTCGAACG 60.513 63.158 23.55 23.55 40.31 3.95
735 1427 1.153958 GGTAGGAACGGTCGAACGG 60.154 63.158 28.62 9.37 38.39 4.44
736 1428 1.586154 GGTAGGAACGGTCGAACGGA 61.586 60.000 28.62 3.58 38.39 4.69
737 1429 0.179179 GTAGGAACGGTCGAACGGAG 60.179 60.000 28.62 0.00 38.39 4.63
738 1430 1.308069 TAGGAACGGTCGAACGGAGG 61.308 60.000 28.62 0.00 38.39 4.30
739 1431 2.126189 GAACGGTCGAACGGAGGG 60.126 66.667 28.62 0.00 38.39 4.30
740 1432 2.598394 AACGGTCGAACGGAGGGA 60.598 61.111 28.62 0.00 38.39 4.20
741 1433 2.539263 GAACGGTCGAACGGAGGGAG 62.539 65.000 28.62 0.00 38.39 4.30
742 1434 3.060615 CGGTCGAACGGAGGGAGT 61.061 66.667 16.82 0.00 0.00 3.85
787 1485 2.914695 AAAGAAAATTGGCTGCTGCA 57.085 40.000 17.89 0.88 41.91 4.41
788 1486 2.450609 AAGAAAATTGGCTGCTGCAG 57.549 45.000 24.80 24.80 41.91 4.41
914 1614 0.033894 ACCACACGGAAAACCCAACT 60.034 50.000 0.00 0.00 35.59 3.16
1347 2047 1.601419 CGGAGTTCCACTTCGGGCTA 61.601 60.000 0.00 0.00 43.30 3.93
1493 2193 1.305297 TCCTGGCATCCTCGTCAGT 60.305 57.895 0.00 0.00 0.00 3.41
1494 2194 0.904865 TCCTGGCATCCTCGTCAGTT 60.905 55.000 0.00 0.00 0.00 3.16
1625 2325 2.416162 CGGAGAAGGTAAGCAGAGACAC 60.416 54.545 0.00 0.00 0.00 3.67
1866 2566 4.975502 GCGAAGACATTTTTGAATGACACA 59.024 37.500 6.17 0.00 34.39 3.72
1940 2640 4.580580 CAGGAAGGAGGTAATAATTGTGCC 59.419 45.833 0.00 0.00 0.00 5.01
1950 2650 9.780186 GAGGTAATAATTGTGCCTACTAATCTT 57.220 33.333 1.38 0.00 0.00 2.40
2059 2759 1.747355 CAGAAGCCTGCTGGTATTTGG 59.253 52.381 11.69 0.65 33.07 3.28
2073 2773 5.258051 TGGTATTTGGCAAGTAGGTTTAGG 58.742 41.667 2.36 0.00 0.00 2.69
2104 2804 8.295288 GCAGAGAATTGGTGAGATTTATATTGG 58.705 37.037 0.00 0.00 0.00 3.16
2155 2856 9.620660 ATTGTCGTAGAATTTGGTAAAATTGTC 57.379 29.630 1.37 0.00 44.27 3.18
2160 2861 9.043678 CGTAGAATTTGGTAAAATTGTCGTAAC 57.956 33.333 1.37 0.00 44.27 2.50
2325 3028 5.067674 GCCATATTTTGAGTTGTGGCTGATA 59.932 40.000 6.92 0.00 46.44 2.15
2588 3292 9.043079 GTTCTTATTTAAAAGATACTCCCTCCG 57.957 37.037 0.00 0.00 35.48 4.63
2589 3293 7.732996 TCTTATTTAAAAGATACTCCCTCCGG 58.267 38.462 0.00 0.00 30.54 5.14
2590 3294 3.832615 TTAAAAGATACTCCCTCCGGC 57.167 47.619 0.00 0.00 0.00 6.13
2591 3295 0.837940 AAAAGATACTCCCTCCGGCC 59.162 55.000 0.00 0.00 0.00 6.13
2592 3296 1.054978 AAAGATACTCCCTCCGGCCC 61.055 60.000 0.00 0.00 0.00 5.80
2593 3297 2.122989 GATACTCCCTCCGGCCCA 60.123 66.667 0.00 0.00 0.00 5.36
2594 3298 1.536662 GATACTCCCTCCGGCCCAT 60.537 63.158 0.00 0.00 0.00 4.00
2595 3299 1.831652 GATACTCCCTCCGGCCCATG 61.832 65.000 0.00 0.00 0.00 3.66
2596 3300 2.326529 ATACTCCCTCCGGCCCATGA 62.327 60.000 0.00 0.00 0.00 3.07
2597 3301 2.326529 TACTCCCTCCGGCCCATGAT 62.327 60.000 0.00 0.00 0.00 2.45
2598 3302 1.536418 CTCCCTCCGGCCCATGATA 60.536 63.158 0.00 0.00 0.00 2.15
2599 3303 0.911525 CTCCCTCCGGCCCATGATAT 60.912 60.000 0.00 0.00 0.00 1.63
2600 3304 0.415830 TCCCTCCGGCCCATGATATA 59.584 55.000 0.00 0.00 0.00 0.86
2601 3305 1.203376 TCCCTCCGGCCCATGATATAA 60.203 52.381 0.00 0.00 0.00 0.98
2602 3306 1.210478 CCCTCCGGCCCATGATATAAG 59.790 57.143 0.00 0.00 0.00 1.73
2603 3307 2.187958 CCTCCGGCCCATGATATAAGA 58.812 52.381 0.00 0.00 0.00 2.10
2604 3308 2.774234 CCTCCGGCCCATGATATAAGAT 59.226 50.000 0.00 0.00 0.00 2.40
2605 3309 3.432749 CCTCCGGCCCATGATATAAGATG 60.433 52.174 0.00 0.00 0.00 2.90
2606 3310 3.181329 TCCGGCCCATGATATAAGATGT 58.819 45.455 0.00 0.00 0.00 3.06
2607 3311 3.587061 TCCGGCCCATGATATAAGATGTT 59.413 43.478 0.00 0.00 0.00 2.71
2608 3312 4.780554 TCCGGCCCATGATATAAGATGTTA 59.219 41.667 0.00 0.00 0.00 2.41
2609 3313 5.428457 TCCGGCCCATGATATAAGATGTTAT 59.572 40.000 0.00 0.29 33.25 1.89
2610 3314 6.069673 TCCGGCCCATGATATAAGATGTTATT 60.070 38.462 0.00 0.00 31.04 1.40
2611 3315 7.126573 TCCGGCCCATGATATAAGATGTTATTA 59.873 37.037 0.00 0.00 31.04 0.98
2612 3316 7.226720 CCGGCCCATGATATAAGATGTTATTAC 59.773 40.741 0.00 0.00 31.04 1.89
2613 3317 7.768582 CGGCCCATGATATAAGATGTTATTACA 59.231 37.037 0.00 2.83 38.95 2.41
2614 3318 9.461312 GGCCCATGATATAAGATGTTATTACAA 57.539 33.333 0.00 0.00 37.91 2.41
2654 3358 3.206150 ACATCTTATGTTGTGGGATCGC 58.794 45.455 2.14 2.14 41.63 4.58
2655 3359 3.118261 ACATCTTATGTTGTGGGATCGCT 60.118 43.478 11.46 0.00 41.63 4.93
2656 3360 2.905075 TCTTATGTTGTGGGATCGCTG 58.095 47.619 11.46 0.00 0.00 5.18
2657 3361 1.942657 CTTATGTTGTGGGATCGCTGG 59.057 52.381 11.46 0.00 0.00 4.85
2658 3362 0.908910 TATGTTGTGGGATCGCTGGT 59.091 50.000 11.46 0.00 0.00 4.00
2659 3363 0.908910 ATGTTGTGGGATCGCTGGTA 59.091 50.000 11.46 0.00 0.00 3.25
2660 3364 0.249120 TGTTGTGGGATCGCTGGTAG 59.751 55.000 11.46 0.00 0.00 3.18
2661 3365 0.535335 GTTGTGGGATCGCTGGTAGA 59.465 55.000 11.46 0.00 0.00 2.59
2662 3366 1.139058 GTTGTGGGATCGCTGGTAGAT 59.861 52.381 11.46 0.00 0.00 1.98
2663 3367 2.364324 GTTGTGGGATCGCTGGTAGATA 59.636 50.000 11.46 0.00 0.00 1.98
2664 3368 2.239400 TGTGGGATCGCTGGTAGATAG 58.761 52.381 11.46 0.00 0.00 2.08
2665 3369 1.546476 GTGGGATCGCTGGTAGATAGG 59.454 57.143 11.46 0.00 0.00 2.57
2666 3370 1.147191 TGGGATCGCTGGTAGATAGGT 59.853 52.381 11.46 0.00 0.00 3.08
2667 3371 1.546476 GGGATCGCTGGTAGATAGGTG 59.454 57.143 1.84 0.00 0.00 4.00
2668 3372 2.240279 GGATCGCTGGTAGATAGGTGT 58.760 52.381 0.00 0.00 0.00 4.16
2669 3373 2.628657 GGATCGCTGGTAGATAGGTGTT 59.371 50.000 0.00 0.00 0.00 3.32
2670 3374 3.553096 GGATCGCTGGTAGATAGGTGTTG 60.553 52.174 0.00 0.00 0.00 3.33
2671 3375 2.453521 TCGCTGGTAGATAGGTGTTGT 58.546 47.619 0.00 0.00 0.00 3.32
2672 3376 2.165641 TCGCTGGTAGATAGGTGTTGTG 59.834 50.000 0.00 0.00 0.00 3.33
2673 3377 2.280628 GCTGGTAGATAGGTGTTGTGC 58.719 52.381 0.00 0.00 0.00 4.57
2674 3378 2.354704 GCTGGTAGATAGGTGTTGTGCA 60.355 50.000 0.00 0.00 0.00 4.57
2675 3379 3.682718 GCTGGTAGATAGGTGTTGTGCAT 60.683 47.826 0.00 0.00 0.00 3.96
2676 3380 4.442893 GCTGGTAGATAGGTGTTGTGCATA 60.443 45.833 0.00 0.00 0.00 3.14
2677 3381 5.670485 CTGGTAGATAGGTGTTGTGCATAA 58.330 41.667 0.00 0.00 0.00 1.90
2678 3382 5.670485 TGGTAGATAGGTGTTGTGCATAAG 58.330 41.667 0.00 0.00 0.00 1.73
2679 3383 5.188948 TGGTAGATAGGTGTTGTGCATAAGT 59.811 40.000 0.00 0.00 0.00 2.24
2680 3384 6.113411 GGTAGATAGGTGTTGTGCATAAGTT 58.887 40.000 0.00 0.00 0.00 2.66
2681 3385 6.258068 GGTAGATAGGTGTTGTGCATAAGTTC 59.742 42.308 0.00 0.00 0.00 3.01
2682 3386 6.054860 AGATAGGTGTTGTGCATAAGTTCT 57.945 37.500 0.00 0.00 0.00 3.01
2683 3387 6.476378 AGATAGGTGTTGTGCATAAGTTCTT 58.524 36.000 0.00 0.00 0.00 2.52
2684 3388 7.620880 AGATAGGTGTTGTGCATAAGTTCTTA 58.379 34.615 0.00 0.00 0.00 2.10
2685 3389 8.267894 AGATAGGTGTTGTGCATAAGTTCTTAT 58.732 33.333 0.00 0.00 0.00 1.73
2686 3390 8.807948 ATAGGTGTTGTGCATAAGTTCTTATT 57.192 30.769 0.00 0.00 0.00 1.40
2687 3391 7.524717 AGGTGTTGTGCATAAGTTCTTATTT 57.475 32.000 0.00 0.00 0.00 1.40
2688 3392 8.630054 AGGTGTTGTGCATAAGTTCTTATTTA 57.370 30.769 0.00 0.00 0.00 1.40
2689 3393 9.073475 AGGTGTTGTGCATAAGTTCTTATTTAA 57.927 29.630 0.00 0.00 0.00 1.52
2690 3394 9.685828 GGTGTTGTGCATAAGTTCTTATTTAAA 57.314 29.630 0.00 0.00 0.00 1.52
2812 3526 3.056891 ACATGTTGCAGATTTTAACCCCG 60.057 43.478 0.00 0.00 0.00 5.73
3089 3803 4.572389 CACTGTGTCCCTGTTATCATAAGC 59.428 45.833 0.00 0.00 0.00 3.09
3269 3983 7.687941 AGTGGATAAACATTTTGAGTACCAG 57.312 36.000 0.00 0.00 0.00 4.00
3369 4083 6.168270 AGGCACATAGGTTTAGAAGATCTC 57.832 41.667 0.00 0.00 0.00 2.75
3427 4141 6.327365 AGGAGGTGTATGTATTGATGATGTGA 59.673 38.462 0.00 0.00 0.00 3.58
3690 4411 9.766277 CAAAAACAGATAGCTCAGACTTTTATC 57.234 33.333 0.00 0.00 0.00 1.75
3733 4454 4.824289 AGGAAGGCAAATGCTTATTGTTG 58.176 39.130 5.25 0.00 41.70 3.33
3743 4464 8.111836 GCAAATGCTTATTGTTGATGTAACATG 58.888 33.333 0.00 0.00 42.38 3.21
3790 4511 7.229306 TCAGAATGTATGTTTGCTCAGAGTTTT 59.771 33.333 0.00 0.00 37.40 2.43
3832 4553 6.652205 ACTTAAAAATAGTCCCTCCATCCA 57.348 37.500 0.00 0.00 0.00 3.41
3854 4575 6.038161 TCCAGAATTACTTGTCGCATAAATGG 59.962 38.462 0.00 0.00 0.00 3.16
3861 4582 9.950680 ATTACTTGTCGCATAAATGGATAAAAG 57.049 29.630 0.00 0.00 0.00 2.27
3878 4651 9.967451 TGGATAAAAGTGGATGACTAAAATACA 57.033 29.630 0.00 0.00 33.09 2.29
3917 4719 5.934402 TCTCCTACAAGTATTTCCAGACC 57.066 43.478 0.00 0.00 0.00 3.85
3940 4798 8.904099 ACCGAGGGACTATTTTGAAATTATAG 57.096 34.615 0.00 0.00 41.55 1.31
3956 4814 6.460103 AATTATAGAAGTGGGATCCATGCT 57.540 37.500 15.23 5.33 35.28 3.79
3957 4815 7.574021 AATTATAGAAGTGGGATCCATGCTA 57.426 36.000 15.23 7.52 35.28 3.49
3958 4816 6.611613 TTATAGAAGTGGGATCCATGCTAG 57.388 41.667 15.23 0.00 35.28 3.42
3991 4849 1.674359 TGATGTTGTGACCAAAGCGT 58.326 45.000 0.00 0.00 30.94 5.07
3992 4850 2.839975 TGATGTTGTGACCAAAGCGTA 58.160 42.857 0.00 0.00 30.94 4.42
3993 4851 3.407698 TGATGTTGTGACCAAAGCGTAT 58.592 40.909 0.00 0.00 30.94 3.06
3994 4852 3.818210 TGATGTTGTGACCAAAGCGTATT 59.182 39.130 0.00 0.00 30.94 1.89
3995 4853 3.889196 TGTTGTGACCAAAGCGTATTC 57.111 42.857 0.00 0.00 30.94 1.75
3996 4854 3.472652 TGTTGTGACCAAAGCGTATTCT 58.527 40.909 0.00 0.00 30.94 2.40
3997 4855 3.249799 TGTTGTGACCAAAGCGTATTCTG 59.750 43.478 0.00 0.00 30.94 3.02
3998 4856 1.804151 TGTGACCAAAGCGTATTCTGC 59.196 47.619 0.00 0.00 0.00 4.26
3999 4857 1.075542 TGACCAAAGCGTATTCTGCG 58.924 50.000 0.00 0.00 37.44 5.18
4000 4858 1.076332 GACCAAAGCGTATTCTGCGT 58.924 50.000 0.00 0.00 37.44 5.24
4001 4859 1.060698 GACCAAAGCGTATTCTGCGTC 59.939 52.381 0.00 0.00 37.44 5.19
4002 4860 1.337823 ACCAAAGCGTATTCTGCGTCT 60.338 47.619 0.00 0.00 37.44 4.18
4003 4861 1.324736 CCAAAGCGTATTCTGCGTCTC 59.675 52.381 0.00 0.00 37.44 3.36
4004 4862 1.992667 CAAAGCGTATTCTGCGTCTCA 59.007 47.619 0.00 0.00 37.44 3.27
4005 4863 2.363788 AAGCGTATTCTGCGTCTCAA 57.636 45.000 0.00 0.00 37.44 3.02
4006 4864 1.914634 AGCGTATTCTGCGTCTCAAG 58.085 50.000 0.00 0.00 37.44 3.02
4007 4865 1.472878 AGCGTATTCTGCGTCTCAAGA 59.527 47.619 0.00 0.00 37.44 3.02
4008 4866 2.094700 AGCGTATTCTGCGTCTCAAGAA 60.095 45.455 0.00 0.00 37.44 2.52
4009 4867 2.666508 GCGTATTCTGCGTCTCAAGAAA 59.333 45.455 0.00 0.00 0.00 2.52
4010 4868 3.241804 GCGTATTCTGCGTCTCAAGAAAG 60.242 47.826 0.00 0.00 0.00 2.62
4011 4869 3.304559 CGTATTCTGCGTCTCAAGAAAGG 59.695 47.826 0.00 0.00 0.00 3.11
4012 4870 2.910688 TTCTGCGTCTCAAGAAAGGT 57.089 45.000 0.00 0.00 0.00 3.50
4013 4871 2.440539 TCTGCGTCTCAAGAAAGGTC 57.559 50.000 0.00 0.00 0.00 3.85
4014 4872 1.000955 TCTGCGTCTCAAGAAAGGTCC 59.999 52.381 0.00 0.00 0.00 4.46
4015 4873 0.756294 TGCGTCTCAAGAAAGGTCCA 59.244 50.000 0.00 0.00 0.00 4.02
4016 4874 1.270305 TGCGTCTCAAGAAAGGTCCAG 60.270 52.381 0.00 0.00 0.00 3.86
4017 4875 1.433534 CGTCTCAAGAAAGGTCCAGC 58.566 55.000 0.00 0.00 0.00 4.85
4018 4876 1.270305 CGTCTCAAGAAAGGTCCAGCA 60.270 52.381 0.00 0.00 0.00 4.41
4019 4877 2.613977 CGTCTCAAGAAAGGTCCAGCAT 60.614 50.000 0.00 0.00 0.00 3.79
4020 4878 3.416156 GTCTCAAGAAAGGTCCAGCATT 58.584 45.455 0.00 0.00 0.00 3.56
4021 4879 3.823304 GTCTCAAGAAAGGTCCAGCATTT 59.177 43.478 0.00 0.00 33.38 2.32
4022 4880 4.279420 GTCTCAAGAAAGGTCCAGCATTTT 59.721 41.667 0.00 0.00 30.56 1.82
4023 4881 4.520492 TCTCAAGAAAGGTCCAGCATTTTC 59.480 41.667 0.00 0.00 30.56 2.29
4024 4882 3.573967 TCAAGAAAGGTCCAGCATTTTCC 59.426 43.478 0.00 0.00 30.56 3.13
4025 4883 2.162681 AGAAAGGTCCAGCATTTTCCG 58.837 47.619 0.00 0.00 30.56 4.30
4026 4884 2.159382 GAAAGGTCCAGCATTTTCCGA 58.841 47.619 0.00 0.00 30.56 4.55
4027 4885 2.514458 AAGGTCCAGCATTTTCCGAT 57.486 45.000 0.00 0.00 0.00 4.18
4028 4886 1.755179 AGGTCCAGCATTTTCCGATG 58.245 50.000 0.00 0.00 0.00 3.84
4029 4887 1.281867 AGGTCCAGCATTTTCCGATGA 59.718 47.619 0.00 0.00 0.00 2.92
4030 4888 2.092212 AGGTCCAGCATTTTCCGATGAT 60.092 45.455 0.00 0.00 0.00 2.45
4031 4889 2.033801 GGTCCAGCATTTTCCGATGATG 59.966 50.000 0.00 0.00 41.74 3.07
4032 4890 2.684881 GTCCAGCATTTTCCGATGATGT 59.315 45.455 2.95 0.00 40.78 3.06
4033 4891 3.129287 GTCCAGCATTTTCCGATGATGTT 59.871 43.478 2.95 0.00 40.78 2.71
4034 4892 3.129113 TCCAGCATTTTCCGATGATGTTG 59.871 43.478 2.95 0.00 40.78 3.33
4035 4893 3.119388 CCAGCATTTTCCGATGATGTTGT 60.119 43.478 2.95 0.00 40.78 3.32
4036 4894 3.855379 CAGCATTTTCCGATGATGTTGTG 59.145 43.478 0.00 0.00 38.33 3.33
4037 4895 3.758023 AGCATTTTCCGATGATGTTGTGA 59.242 39.130 0.00 0.00 0.00 3.58
4038 4896 3.853671 GCATTTTCCGATGATGTTGTGAC 59.146 43.478 0.00 0.00 0.00 3.67
4039 4897 4.414852 CATTTTCCGATGATGTTGTGACC 58.585 43.478 0.00 0.00 0.00 4.02
4040 4898 2.849294 TTCCGATGATGTTGTGACCA 57.151 45.000 0.00 0.00 0.00 4.02
4041 4899 2.849294 TCCGATGATGTTGTGACCAA 57.151 45.000 0.00 0.00 0.00 3.67
4042 4900 3.133141 TCCGATGATGTTGTGACCAAA 57.867 42.857 0.00 0.00 30.94 3.28
4043 4901 3.073678 TCCGATGATGTTGTGACCAAAG 58.926 45.455 0.00 0.00 30.94 2.77
4044 4902 2.414559 CCGATGATGTTGTGACCAAAGC 60.415 50.000 0.00 0.00 30.94 3.51
4045 4903 2.725759 CGATGATGTTGTGACCAAAGCG 60.726 50.000 0.00 0.00 30.94 4.68
4049 4907 3.317711 TGATGTTGTGACCAAAGCGATTT 59.682 39.130 0.00 0.00 30.94 2.17
4080 4938 8.800972 CATGTGAATTTATGTTGTGTATTCTGC 58.199 33.333 0.00 0.00 0.00 4.26
4081 4939 7.020602 TGTGAATTTATGTTGTGTATTCTGCG 58.979 34.615 0.00 0.00 0.00 5.18
4082 4940 7.021196 GTGAATTTATGTTGTGTATTCTGCGT 58.979 34.615 0.00 0.00 0.00 5.24
4083 4941 7.216317 GTGAATTTATGTTGTGTATTCTGCGTC 59.784 37.037 0.00 0.00 0.00 5.19
4084 4942 6.985188 ATTTATGTTGTGTATTCTGCGTCT 57.015 33.333 0.00 0.00 0.00 4.18
4085 4943 6.403333 TTTATGTTGTGTATTCTGCGTCTC 57.597 37.500 0.00 0.00 0.00 3.36
4086 4944 3.378911 TGTTGTGTATTCTGCGTCTCA 57.621 42.857 0.00 0.00 0.00 3.27
4087 4945 3.723260 TGTTGTGTATTCTGCGTCTCAA 58.277 40.909 0.00 0.00 0.00 3.02
4088 4946 4.123506 TGTTGTGTATTCTGCGTCTCAAA 58.876 39.130 0.00 0.00 0.00 2.69
4115 4973 4.427312 GTCCAGCATAAAGGCAAATCAAG 58.573 43.478 0.00 0.00 35.83 3.02
4117 4975 4.771577 TCCAGCATAAAGGCAAATCAAGAA 59.228 37.500 0.00 0.00 35.83 2.52
4157 5015 9.807649 CGATTCAAAGGATTTTCATAGGAATTT 57.192 29.630 0.00 0.00 35.03 1.82
4164 5022 8.026396 AGGATTTTCATAGGAATTTTGGATGG 57.974 34.615 0.00 0.00 31.93 3.51
4177 5035 9.147732 GGAATTTTGGATGGTTAGAATCCTTAT 57.852 33.333 4.23 0.00 43.52 1.73
4178 5036 9.971922 GAATTTTGGATGGTTAGAATCCTTATG 57.028 33.333 4.23 0.00 43.52 1.90
4181 5039 9.713684 TTTTGGATGGTTAGAATCCTTATGAAT 57.286 29.630 4.23 0.00 43.52 2.57
4297 5155 8.655651 TTAGCATTTACTCAAAACCTTTTTGG 57.344 30.769 10.65 5.36 42.93 3.28
4299 5157 7.508687 AGCATTTACTCAAAACCTTTTTGGAT 58.491 30.769 10.65 3.52 39.71 3.41
4300 5158 7.992608 AGCATTTACTCAAAACCTTTTTGGATT 59.007 29.630 10.65 0.49 39.71 3.01
4301 5159 8.620416 GCATTTACTCAAAACCTTTTTGGATTT 58.380 29.630 10.65 0.00 40.79 2.17
4306 5164 8.402798 ACTCAAAACCTTTTTGGATTTTGTTT 57.597 26.923 10.65 0.00 41.72 2.83
4345 5203 5.033589 TGCAATCAAACAACCCAAAATCT 57.966 34.783 0.00 0.00 0.00 2.40
4346 5204 5.435291 TGCAATCAAACAACCCAAAATCTT 58.565 33.333 0.00 0.00 0.00 2.40
4347 5205 6.586344 TGCAATCAAACAACCCAAAATCTTA 58.414 32.000 0.00 0.00 0.00 2.10
4348 5206 6.705381 TGCAATCAAACAACCCAAAATCTTAG 59.295 34.615 0.00 0.00 0.00 2.18
4349 5207 6.147656 GCAATCAAACAACCCAAAATCTTAGG 59.852 38.462 0.00 0.00 0.00 2.69
4351 5209 4.039852 TCAAACAACCCAAAATCTTAGGGC 59.960 41.667 0.00 0.00 46.88 5.19
4352 5210 2.536066 ACAACCCAAAATCTTAGGGCC 58.464 47.619 0.00 0.00 46.88 5.80
4353 5211 2.111792 ACAACCCAAAATCTTAGGGCCT 59.888 45.455 12.58 12.58 46.88 5.19
4354 5212 2.760650 CAACCCAAAATCTTAGGGCCTC 59.239 50.000 10.74 0.00 46.88 4.70
4355 5213 2.288525 ACCCAAAATCTTAGGGCCTCT 58.711 47.619 10.74 0.00 46.88 3.69
4356 5214 2.654896 ACCCAAAATCTTAGGGCCTCTT 59.345 45.455 10.74 0.00 46.88 2.85
4357 5215 3.077543 ACCCAAAATCTTAGGGCCTCTTT 59.922 43.478 10.74 3.24 46.88 2.52
4358 5216 3.448660 CCCAAAATCTTAGGGCCTCTTTG 59.551 47.826 10.74 12.83 35.44 2.77
4359 5217 4.344104 CCAAAATCTTAGGGCCTCTTTGA 58.656 43.478 10.74 4.61 0.00 2.69
4360 5218 4.958581 CCAAAATCTTAGGGCCTCTTTGAT 59.041 41.667 10.74 7.00 0.00 2.57
4361 5219 5.423290 CCAAAATCTTAGGGCCTCTTTGATT 59.577 40.000 10.74 12.82 32.01 2.57
4362 5220 6.406288 CCAAAATCTTAGGGCCTCTTTGATTC 60.406 42.308 10.74 0.00 31.09 2.52
4363 5221 3.543680 TCTTAGGGCCTCTTTGATTCG 57.456 47.619 10.74 0.00 0.00 3.34
4364 5222 2.838202 TCTTAGGGCCTCTTTGATTCGT 59.162 45.455 10.74 0.00 0.00 3.85
4365 5223 4.028131 TCTTAGGGCCTCTTTGATTCGTA 58.972 43.478 10.74 0.00 0.00 3.43
4366 5224 2.990066 AGGGCCTCTTTGATTCGTAG 57.010 50.000 0.00 0.00 0.00 3.51
4367 5225 1.486726 AGGGCCTCTTTGATTCGTAGG 59.513 52.381 0.00 0.00 0.00 3.18
4368 5226 1.485066 GGGCCTCTTTGATTCGTAGGA 59.515 52.381 0.84 0.00 0.00 2.94
4369 5227 2.104963 GGGCCTCTTTGATTCGTAGGAT 59.895 50.000 0.84 0.00 0.00 3.24
4370 5228 3.433740 GGGCCTCTTTGATTCGTAGGATT 60.434 47.826 0.84 0.00 0.00 3.01
4371 5229 4.200092 GGCCTCTTTGATTCGTAGGATTT 58.800 43.478 0.00 0.00 0.00 2.17
4372 5230 4.640647 GGCCTCTTTGATTCGTAGGATTTT 59.359 41.667 0.00 0.00 0.00 1.82
4373 5231 5.449177 GGCCTCTTTGATTCGTAGGATTTTG 60.449 44.000 0.00 0.00 0.00 2.44
4374 5232 5.354234 GCCTCTTTGATTCGTAGGATTTTGA 59.646 40.000 0.00 0.00 0.00 2.69
4375 5233 6.128007 GCCTCTTTGATTCGTAGGATTTTGAA 60.128 38.462 0.00 0.00 0.00 2.69
4376 5234 7.574967 GCCTCTTTGATTCGTAGGATTTTGAAA 60.575 37.037 0.00 0.00 0.00 2.69
4377 5235 8.296713 CCTCTTTGATTCGTAGGATTTTGAAAA 58.703 33.333 0.00 0.00 0.00 2.29
4378 5236 9.118236 CTCTTTGATTCGTAGGATTTTGAAAAC 57.882 33.333 0.00 0.00 0.00 2.43
4379 5237 7.801315 TCTTTGATTCGTAGGATTTTGAAAACG 59.199 33.333 0.00 0.00 0.00 3.60
4380 5238 6.548441 TGATTCGTAGGATTTTGAAAACGT 57.452 33.333 0.00 0.00 0.00 3.99
4381 5239 7.655236 TGATTCGTAGGATTTTGAAAACGTA 57.345 32.000 0.00 0.00 0.00 3.57
4382 5240 8.085720 TGATTCGTAGGATTTTGAAAACGTAA 57.914 30.769 0.00 0.00 0.00 3.18
4384 5242 7.712264 TTCGTAGGATTTTGAAAACGTAAGA 57.288 32.000 0.00 0.00 43.62 2.10
4385 5243 7.712264 TCGTAGGATTTTGAAAACGTAAGAA 57.288 32.000 0.00 0.00 43.62 2.52
4386 5244 8.314143 TCGTAGGATTTTGAAAACGTAAGAAT 57.686 30.769 0.00 0.00 43.62 2.40
4387 5245 9.421806 TCGTAGGATTTTGAAAACGTAAGAATA 57.578 29.630 0.00 0.00 43.62 1.75
4388 5246 9.685005 CGTAGGATTTTGAAAACGTAAGAATAG 57.315 33.333 0.00 0.00 43.62 1.73
4389 5247 9.983804 GTAGGATTTTGAAAACGTAAGAATAGG 57.016 33.333 0.00 0.00 43.62 2.57
4390 5248 8.857694 AGGATTTTGAAAACGTAAGAATAGGA 57.142 30.769 0.00 0.00 43.62 2.94
4391 5249 9.292195 AGGATTTTGAAAACGTAAGAATAGGAA 57.708 29.630 0.00 0.00 43.62 3.36
4392 5250 9.902196 GGATTTTGAAAACGTAAGAATAGGAAA 57.098 29.630 0.00 0.00 43.62 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.924238 GCCAATAGCCACATTGTCG 57.076 52.632 0.00 0.00 34.67 4.35
63 64 5.065988 TCGTTATGAAGCCTTTTCCTATTGC 59.934 40.000 0.00 0.00 0.00 3.56
82 83 8.844244 AGTCTAAGTGTTCTTCTTAAGTCGTTA 58.156 33.333 1.63 0.00 35.36 3.18
127 130 5.843969 ACTTGGGGGTTGTTAAATCTTTCAT 59.156 36.000 0.00 0.00 0.00 2.57
132 135 4.407365 CAGACTTGGGGGTTGTTAAATCT 58.593 43.478 0.00 0.00 0.00 2.40
155 158 7.916914 TCTAAGTAATTTACCCAAGTCAAGC 57.083 36.000 2.92 0.00 0.00 4.01
190 193 9.965824 GAATAAAGATGTTTTTCTCCTTGTTCA 57.034 29.630 0.00 0.00 0.00 3.18
221 224 9.542462 TTACTTAGTTTGGTCATGCTGTATATC 57.458 33.333 0.00 0.00 0.00 1.63
227 230 7.379529 CAGTTTTTACTTAGTTTGGTCATGCTG 59.620 37.037 0.00 0.00 0.00 4.41
280 283 5.663456 TGAATATAAAACCGGCTAAGTCGT 58.337 37.500 0.00 0.00 0.00 4.34
290 293 9.825972 GTCATCAATACCATGAATATAAAACCG 57.174 33.333 0.00 0.00 31.98 4.44
299 302 2.807967 CCGCGTCATCAATACCATGAAT 59.192 45.455 4.92 0.00 31.98 2.57
300 303 2.209273 CCGCGTCATCAATACCATGAA 58.791 47.619 4.92 0.00 31.98 2.57
303 306 1.865865 GACCGCGTCATCAATACCAT 58.134 50.000 4.92 0.00 32.09 3.55
304 307 0.526739 CGACCGCGTCATCAATACCA 60.527 55.000 4.92 0.00 32.09 3.25
308 311 1.226974 CCTCGACCGCGTCATCAAT 60.227 57.895 4.92 0.00 38.98 2.57
387 390 4.565166 CGCGTCTCAAAATGAATAGTGGTA 59.435 41.667 0.00 0.00 0.00 3.25
398 401 1.442769 AGACATGCGCGTCTCAAAAT 58.557 45.000 11.60 0.00 42.70 1.82
400 403 1.194547 GAAAGACATGCGCGTCTCAAA 59.805 47.619 16.73 0.00 45.56 2.69
403 406 0.642800 GAGAAAGACATGCGCGTCTC 59.357 55.000 16.73 7.58 45.56 3.36
413 423 0.491823 TGGGAGGAGGGAGAAAGACA 59.508 55.000 0.00 0.00 0.00 3.41
435 445 0.750182 AGACGGTTTGGTTGGTGGTG 60.750 55.000 0.00 0.00 0.00 4.17
447 457 0.739561 GAGGATGCGAGTAGACGGTT 59.260 55.000 0.00 0.00 0.00 4.44
459 469 2.659897 CTAGCCGCACGAGGATGC 60.660 66.667 0.00 0.00 42.48 3.91
461 471 2.196925 CCTCTAGCCGCACGAGGAT 61.197 63.158 18.34 0.00 45.67 3.24
465 475 4.129737 GCACCTCTAGCCGCACGA 62.130 66.667 0.00 0.00 0.00 4.35
467 477 2.202810 GAGCACCTCTAGCCGCAC 60.203 66.667 0.00 0.00 0.00 5.34
470 480 2.811101 CAGGAGCACCTCTAGCCG 59.189 66.667 0.00 0.00 45.94 5.52
556 1215 4.353383 GGGAGTACCTGAAAACAACTCT 57.647 45.455 0.00 0.00 37.36 3.24
603 1263 9.793259 AGTATGTTGTCCTTAAAGAAATCTTCA 57.207 29.630 0.00 0.00 34.61 3.02
728 1420 1.278985 TGTACTACTCCCTCCGTTCGA 59.721 52.381 0.00 0.00 0.00 3.71
729 1421 1.742761 TGTACTACTCCCTCCGTTCG 58.257 55.000 0.00 0.00 0.00 3.95
731 1423 3.053842 TCTCATGTACTACTCCCTCCGTT 60.054 47.826 0.00 0.00 0.00 4.44
732 1424 2.508716 TCTCATGTACTACTCCCTCCGT 59.491 50.000 0.00 0.00 0.00 4.69
733 1425 3.210232 TCTCATGTACTACTCCCTCCG 57.790 52.381 0.00 0.00 0.00 4.63
734 1426 6.294843 GCTATTTCTCATGTACTACTCCCTCC 60.295 46.154 0.00 0.00 0.00 4.30
735 1427 6.265649 TGCTATTTCTCATGTACTACTCCCTC 59.734 42.308 0.00 0.00 0.00 4.30
736 1428 6.136857 TGCTATTTCTCATGTACTACTCCCT 58.863 40.000 0.00 0.00 0.00 4.20
737 1429 6.406692 TGCTATTTCTCATGTACTACTCCC 57.593 41.667 0.00 0.00 0.00 4.30
738 1430 6.926272 CCTTGCTATTTCTCATGTACTACTCC 59.074 42.308 0.00 0.00 0.00 3.85
739 1431 6.926272 CCCTTGCTATTTCTCATGTACTACTC 59.074 42.308 0.00 0.00 0.00 2.59
740 1432 6.611642 TCCCTTGCTATTTCTCATGTACTACT 59.388 38.462 0.00 0.00 0.00 2.57
741 1433 6.817184 TCCCTTGCTATTTCTCATGTACTAC 58.183 40.000 0.00 0.00 0.00 2.73
742 1434 6.839134 TCTCCCTTGCTATTTCTCATGTACTA 59.161 38.462 0.00 0.00 0.00 1.82
914 1614 1.219213 TGGAAGGAAGGGGAAGCAAAA 59.781 47.619 0.00 0.00 0.00 2.44
1296 1996 4.657824 ACGAACACCCTGACGGCG 62.658 66.667 4.80 4.80 33.26 6.46
1625 2325 0.741915 GAGCTTCTCCTGTAGGGACG 59.258 60.000 0.00 0.00 39.58 4.79
1855 2555 0.179004 AACCCGGCTGTGTCATTCAA 60.179 50.000 0.00 0.00 0.00 2.69
1866 2566 1.153168 CCGATCATCAAACCCGGCT 60.153 57.895 0.00 0.00 33.47 5.52
1940 2640 5.163913 GCAGTGTGCAGAACAAGATTAGTAG 60.164 44.000 0.00 0.00 44.26 2.57
2059 2759 3.343617 TGCATCACCTAAACCTACTTGC 58.656 45.455 0.00 0.00 0.00 4.01
2073 2773 3.603532 TCTCACCAATTCTCTGCATCAC 58.396 45.455 0.00 0.00 0.00 3.06
2155 2856 5.460419 GTCTCAGCCTAATGATTCAGTTACG 59.540 44.000 0.00 0.00 0.00 3.18
2160 2861 6.990798 TCATAGTCTCAGCCTAATGATTCAG 58.009 40.000 0.00 0.00 0.00 3.02
2584 3288 3.198635 ACATCTTATATCATGGGCCGGAG 59.801 47.826 5.05 0.00 0.00 4.63
2585 3289 3.181329 ACATCTTATATCATGGGCCGGA 58.819 45.455 5.05 0.00 0.00 5.14
2586 3290 3.634397 ACATCTTATATCATGGGCCGG 57.366 47.619 0.00 0.00 0.00 6.13
2587 3291 7.768582 TGTAATAACATCTTATATCATGGGCCG 59.231 37.037 0.00 0.00 0.00 6.13
2588 3292 9.461312 TTGTAATAACATCTTATATCATGGGCC 57.539 33.333 0.00 0.00 34.97 5.80
2634 3338 3.249320 CAGCGATCCCACAACATAAGATG 59.751 47.826 0.00 0.00 0.00 2.90
2635 3339 3.470709 CAGCGATCCCACAACATAAGAT 58.529 45.455 0.00 0.00 0.00 2.40
2636 3340 2.419990 CCAGCGATCCCACAACATAAGA 60.420 50.000 0.00 0.00 0.00 2.10
2637 3341 1.942657 CCAGCGATCCCACAACATAAG 59.057 52.381 0.00 0.00 0.00 1.73
2638 3342 1.280710 ACCAGCGATCCCACAACATAA 59.719 47.619 0.00 0.00 0.00 1.90
2639 3343 0.908910 ACCAGCGATCCCACAACATA 59.091 50.000 0.00 0.00 0.00 2.29
2640 3344 0.908910 TACCAGCGATCCCACAACAT 59.091 50.000 0.00 0.00 0.00 2.71
2641 3345 0.249120 CTACCAGCGATCCCACAACA 59.751 55.000 0.00 0.00 0.00 3.33
2642 3346 0.535335 TCTACCAGCGATCCCACAAC 59.465 55.000 0.00 0.00 0.00 3.32
2643 3347 1.496060 ATCTACCAGCGATCCCACAA 58.504 50.000 0.00 0.00 0.00 3.33
2644 3348 2.239400 CTATCTACCAGCGATCCCACA 58.761 52.381 0.00 0.00 0.00 4.17
2645 3349 1.546476 CCTATCTACCAGCGATCCCAC 59.454 57.143 0.00 0.00 0.00 4.61
2646 3350 1.147191 ACCTATCTACCAGCGATCCCA 59.853 52.381 0.00 0.00 0.00 4.37
2647 3351 1.546476 CACCTATCTACCAGCGATCCC 59.454 57.143 0.00 0.00 0.00 3.85
2648 3352 2.240279 ACACCTATCTACCAGCGATCC 58.760 52.381 0.00 0.00 0.00 3.36
2649 3353 3.068307 ACAACACCTATCTACCAGCGATC 59.932 47.826 0.00 0.00 0.00 3.69
2650 3354 3.031736 ACAACACCTATCTACCAGCGAT 58.968 45.455 0.00 0.00 0.00 4.58
2651 3355 2.165641 CACAACACCTATCTACCAGCGA 59.834 50.000 0.00 0.00 0.00 4.93
2652 3356 2.540515 CACAACACCTATCTACCAGCG 58.459 52.381 0.00 0.00 0.00 5.18
2653 3357 2.280628 GCACAACACCTATCTACCAGC 58.719 52.381 0.00 0.00 0.00 4.85
2654 3358 3.610040 TGCACAACACCTATCTACCAG 57.390 47.619 0.00 0.00 0.00 4.00
2655 3359 5.188948 ACTTATGCACAACACCTATCTACCA 59.811 40.000 0.00 0.00 0.00 3.25
2656 3360 5.671493 ACTTATGCACAACACCTATCTACC 58.329 41.667 0.00 0.00 0.00 3.18
2657 3361 7.042335 AGAACTTATGCACAACACCTATCTAC 58.958 38.462 0.00 0.00 0.00 2.59
2658 3362 7.182817 AGAACTTATGCACAACACCTATCTA 57.817 36.000 0.00 0.00 0.00 1.98
2659 3363 6.054860 AGAACTTATGCACAACACCTATCT 57.945 37.500 0.00 0.00 0.00 1.98
2660 3364 6.743575 AAGAACTTATGCACAACACCTATC 57.256 37.500 0.00 0.00 0.00 2.08
2661 3365 8.807948 AATAAGAACTTATGCACAACACCTAT 57.192 30.769 7.68 0.00 36.04 2.57
2662 3366 8.630054 AAATAAGAACTTATGCACAACACCTA 57.370 30.769 7.68 0.00 36.04 3.08
2663 3367 7.524717 AAATAAGAACTTATGCACAACACCT 57.475 32.000 7.68 0.00 36.04 4.00
2664 3368 9.685828 TTTAAATAAGAACTTATGCACAACACC 57.314 29.630 7.68 0.00 36.04 4.16
2678 3382 9.043079 CGGAGGGAGTATCTTTTAAATAAGAAC 57.957 37.037 0.00 0.00 37.66 3.01
2679 3383 8.765517 ACGGAGGGAGTATCTTTTAAATAAGAA 58.234 33.333 0.00 0.00 37.66 2.52
2680 3384 8.315220 ACGGAGGGAGTATCTTTTAAATAAGA 57.685 34.615 0.00 0.00 38.43 2.10
2681 3385 7.656542 GGACGGAGGGAGTATCTTTTAAATAAG 59.343 40.741 0.00 0.00 33.73 1.73
2682 3386 7.419403 GGGACGGAGGGAGTATCTTTTAAATAA 60.419 40.741 0.00 0.00 33.73 1.40
2683 3387 6.042437 GGGACGGAGGGAGTATCTTTTAAATA 59.958 42.308 0.00 0.00 33.73 1.40
2684 3388 5.163227 GGGACGGAGGGAGTATCTTTTAAAT 60.163 44.000 0.00 0.00 33.73 1.40
2685 3389 4.162888 GGGACGGAGGGAGTATCTTTTAAA 59.837 45.833 0.00 0.00 33.73 1.52
2686 3390 3.708121 GGGACGGAGGGAGTATCTTTTAA 59.292 47.826 0.00 0.00 33.73 1.52
2687 3391 3.303049 GGGACGGAGGGAGTATCTTTTA 58.697 50.000 0.00 0.00 33.73 1.52
2688 3392 2.117051 GGGACGGAGGGAGTATCTTTT 58.883 52.381 0.00 0.00 33.73 2.27
2689 3393 1.007963 TGGGACGGAGGGAGTATCTTT 59.992 52.381 0.00 0.00 33.73 2.52
2690 3394 0.635009 TGGGACGGAGGGAGTATCTT 59.365 55.000 0.00 0.00 33.73 2.40
2691 3395 0.861155 ATGGGACGGAGGGAGTATCT 59.139 55.000 0.00 0.00 33.73 1.98
2692 3396 0.969894 CATGGGACGGAGGGAGTATC 59.030 60.000 0.00 0.00 0.00 2.24
2812 3526 9.640963 ACTAGTTTTCTCACATACAGACATAAC 57.359 33.333 0.00 0.00 0.00 1.89
3089 3803 0.108615 AAGGGAGCTCAATGTCGTCG 60.109 55.000 17.19 0.00 0.00 5.12
3269 3983 4.699257 GCATCATCCTTATGAGATGGGAAC 59.301 45.833 0.00 0.00 45.17 3.62
3369 4083 3.947868 TGCTTCCTCTTTCAGATCTTGG 58.052 45.455 0.00 0.00 0.00 3.61
3427 4141 2.429933 AGCCACCCTATCATCTGGAT 57.570 50.000 0.00 0.00 40.14 3.41
3690 4411 4.570772 CCTAACATACATTCAACTGGACCG 59.429 45.833 0.00 0.00 0.00 4.79
3733 4454 3.065786 TCGGACGGAGTACATGTTACATC 59.934 47.826 2.30 0.00 45.67 3.06
3750 4471 3.067461 ACATTCTGAGCTATCTGTCGGAC 59.933 47.826 0.00 0.00 0.00 4.79
3813 4534 5.796502 TTCTGGATGGAGGGACTATTTTT 57.203 39.130 0.00 0.00 41.55 1.94
3825 4546 3.055458 TGCGACAAGTAATTCTGGATGGA 60.055 43.478 0.00 0.00 0.00 3.41
3828 4549 7.255242 CCATTTATGCGACAAGTAATTCTGGAT 60.255 37.037 0.00 0.00 0.00 3.41
3832 4553 7.807977 ATCCATTTATGCGACAAGTAATTCT 57.192 32.000 0.00 0.00 0.00 2.40
3890 4663 8.669243 GTCTGGAAATACTTGTAGGAGAAATTG 58.331 37.037 0.00 0.00 0.00 2.32
3891 4664 7.829706 GGTCTGGAAATACTTGTAGGAGAAATT 59.170 37.037 0.00 0.00 0.00 1.82
3900 4702 3.449737 CCCTCGGTCTGGAAATACTTGTA 59.550 47.826 0.00 0.00 0.00 2.41
3905 4707 2.108970 AGTCCCTCGGTCTGGAAATAC 58.891 52.381 0.00 0.00 31.03 1.89
3911 4713 2.500098 TCAAAATAGTCCCTCGGTCTGG 59.500 50.000 0.00 0.00 0.00 3.86
3940 4798 3.556004 GCTACTAGCATGGATCCCACTTC 60.556 52.174 9.90 0.00 41.89 3.01
3956 4814 5.109210 CAACATCATCGGAAACAGCTACTA 58.891 41.667 0.00 0.00 0.00 1.82
3957 4815 3.895232 ACATCATCGGAAACAGCTACT 57.105 42.857 0.00 0.00 0.00 2.57
3958 4816 3.684788 ACAACATCATCGGAAACAGCTAC 59.315 43.478 0.00 0.00 0.00 3.58
3991 4849 4.495422 GACCTTTCTTGAGACGCAGAATA 58.505 43.478 0.00 0.00 0.00 1.75
3992 4850 3.330267 GACCTTTCTTGAGACGCAGAAT 58.670 45.455 0.00 0.00 0.00 2.40
3993 4851 2.548067 GGACCTTTCTTGAGACGCAGAA 60.548 50.000 0.00 0.00 0.00 3.02
3994 4852 1.000955 GGACCTTTCTTGAGACGCAGA 59.999 52.381 0.00 0.00 0.00 4.26
3995 4853 1.270305 TGGACCTTTCTTGAGACGCAG 60.270 52.381 0.00 0.00 0.00 5.18
3996 4854 0.756294 TGGACCTTTCTTGAGACGCA 59.244 50.000 0.00 0.00 0.00 5.24
3997 4855 1.433534 CTGGACCTTTCTTGAGACGC 58.566 55.000 0.00 0.00 0.00 5.19
3998 4856 1.270305 TGCTGGACCTTTCTTGAGACG 60.270 52.381 0.00 0.00 0.00 4.18
3999 4857 2.550830 TGCTGGACCTTTCTTGAGAC 57.449 50.000 0.00 0.00 0.00 3.36
4000 4858 3.795688 AATGCTGGACCTTTCTTGAGA 57.204 42.857 0.00 0.00 0.00 3.27
4001 4859 4.321527 GGAAAATGCTGGACCTTTCTTGAG 60.322 45.833 0.00 0.00 0.00 3.02
4002 4860 3.573967 GGAAAATGCTGGACCTTTCTTGA 59.426 43.478 0.00 0.00 0.00 3.02
4003 4861 3.612479 CGGAAAATGCTGGACCTTTCTTG 60.612 47.826 0.00 0.00 0.00 3.02
4004 4862 2.558359 CGGAAAATGCTGGACCTTTCTT 59.442 45.455 0.00 0.00 0.00 2.52
4005 4863 2.162681 CGGAAAATGCTGGACCTTTCT 58.837 47.619 0.00 0.00 0.00 2.52
4006 4864 2.159382 TCGGAAAATGCTGGACCTTTC 58.841 47.619 0.00 0.00 0.00 2.62
4007 4865 2.286365 TCGGAAAATGCTGGACCTTT 57.714 45.000 0.00 0.00 0.00 3.11
4008 4866 2.094675 CATCGGAAAATGCTGGACCTT 58.905 47.619 0.00 0.00 0.00 3.50
4009 4867 1.281867 TCATCGGAAAATGCTGGACCT 59.718 47.619 0.00 0.00 0.00 3.85
4010 4868 1.750193 TCATCGGAAAATGCTGGACC 58.250 50.000 0.00 0.00 0.00 4.46
4011 4869 2.684881 ACATCATCGGAAAATGCTGGAC 59.315 45.455 3.64 0.00 29.18 4.02
4012 4870 3.003394 ACATCATCGGAAAATGCTGGA 57.997 42.857 3.64 0.00 29.18 3.86
4013 4871 3.119388 ACAACATCATCGGAAAATGCTGG 60.119 43.478 9.66 1.93 29.18 4.85
4014 4872 3.855379 CACAACATCATCGGAAAATGCTG 59.145 43.478 3.64 4.57 0.00 4.41
4015 4873 3.758023 TCACAACATCATCGGAAAATGCT 59.242 39.130 3.64 0.00 0.00 3.79
4016 4874 3.853671 GTCACAACATCATCGGAAAATGC 59.146 43.478 3.64 0.00 0.00 3.56
4017 4875 4.082841 TGGTCACAACATCATCGGAAAATG 60.083 41.667 2.48 2.48 0.00 2.32
4018 4876 4.078537 TGGTCACAACATCATCGGAAAAT 58.921 39.130 0.00 0.00 0.00 1.82
4019 4877 3.481453 TGGTCACAACATCATCGGAAAA 58.519 40.909 0.00 0.00 0.00 2.29
4020 4878 3.133141 TGGTCACAACATCATCGGAAA 57.867 42.857 0.00 0.00 0.00 3.13
4021 4879 2.849294 TGGTCACAACATCATCGGAA 57.151 45.000 0.00 0.00 0.00 4.30
4022 4880 2.849294 TTGGTCACAACATCATCGGA 57.151 45.000 0.00 0.00 0.00 4.55
4023 4881 2.414559 GCTTTGGTCACAACATCATCGG 60.415 50.000 0.00 0.00 36.06 4.18
4024 4882 2.725759 CGCTTTGGTCACAACATCATCG 60.726 50.000 0.00 0.00 36.06 3.84
4025 4883 2.483877 TCGCTTTGGTCACAACATCATC 59.516 45.455 0.00 0.00 36.06 2.92
4026 4884 2.503331 TCGCTTTGGTCACAACATCAT 58.497 42.857 0.00 0.00 36.06 2.45
4027 4885 1.960417 TCGCTTTGGTCACAACATCA 58.040 45.000 0.00 0.00 36.06 3.07
4028 4886 3.559238 AATCGCTTTGGTCACAACATC 57.441 42.857 0.00 0.00 36.06 3.06
4029 4887 5.415701 AGATAAATCGCTTTGGTCACAACAT 59.584 36.000 0.00 0.00 36.06 2.71
4030 4888 4.759693 AGATAAATCGCTTTGGTCACAACA 59.240 37.500 0.00 0.00 36.06 3.33
4031 4889 5.106712 TGAGATAAATCGCTTTGGTCACAAC 60.107 40.000 0.00 0.00 36.06 3.32
4032 4890 5.000591 TGAGATAAATCGCTTTGGTCACAA 58.999 37.500 0.00 0.00 34.07 3.33
4033 4891 4.574892 TGAGATAAATCGCTTTGGTCACA 58.425 39.130 0.00 0.00 0.00 3.58
4034 4892 5.065218 ACATGAGATAAATCGCTTTGGTCAC 59.935 40.000 0.00 0.00 0.00 3.67
4035 4893 5.065090 CACATGAGATAAATCGCTTTGGTCA 59.935 40.000 0.00 0.00 0.00 4.02
4036 4894 5.294306 TCACATGAGATAAATCGCTTTGGTC 59.706 40.000 0.00 0.00 0.00 4.02
4037 4895 5.185454 TCACATGAGATAAATCGCTTTGGT 58.815 37.500 0.00 0.00 0.00 3.67
4038 4896 5.739752 TCACATGAGATAAATCGCTTTGG 57.260 39.130 0.00 0.00 0.00 3.28
4039 4897 8.624701 AAATTCACATGAGATAAATCGCTTTG 57.375 30.769 0.00 0.00 0.00 2.77
4041 4899 9.888878 CATAAATTCACATGAGATAAATCGCTT 57.111 29.630 0.00 0.00 0.00 4.68
4042 4900 9.060347 ACATAAATTCACATGAGATAAATCGCT 57.940 29.630 0.00 0.00 0.00 4.93
4043 4901 9.669353 AACATAAATTCACATGAGATAAATCGC 57.331 29.630 0.00 0.00 0.00 4.58
4087 4945 3.238597 TGCCTTTATGCTGGACCTTTTT 58.761 40.909 0.00 0.00 0.00 1.94
4088 4946 2.888212 TGCCTTTATGCTGGACCTTTT 58.112 42.857 0.00 0.00 0.00 2.27
4115 4973 2.115343 ATCGAAGGAGCCCAAACTTC 57.885 50.000 0.00 0.00 37.76 3.01
4117 4975 1.351017 TGAATCGAAGGAGCCCAAACT 59.649 47.619 0.00 0.00 0.00 2.66
4157 5015 9.713684 AAATTCATAAGGATTCTAACCATCCAA 57.286 29.630 1.89 0.00 42.63 3.53
4177 5035 5.930837 ACAACCAACAGAGGAAAAATTCA 57.069 34.783 0.00 0.00 0.00 2.57
4178 5036 6.816140 TCAAACAACCAACAGAGGAAAAATTC 59.184 34.615 0.00 0.00 0.00 2.17
4181 5039 5.730296 TCAAACAACCAACAGAGGAAAAA 57.270 34.783 0.00 0.00 0.00 1.94
4306 5164 8.899427 TTGATTGCATCATAGGAAAAACAAAA 57.101 26.923 0.00 0.00 39.39 2.44
4309 5167 7.440198 TGTTTGATTGCATCATAGGAAAAACA 58.560 30.769 0.00 0.00 39.39 2.83
4310 5168 7.887996 TGTTTGATTGCATCATAGGAAAAAC 57.112 32.000 0.00 0.00 39.39 2.43
4322 5180 5.623169 AGATTTTGGGTTGTTTGATTGCAT 58.377 33.333 0.00 0.00 0.00 3.96
4345 5203 3.134081 CCTACGAATCAAAGAGGCCCTAA 59.866 47.826 0.00 0.00 0.00 2.69
4346 5204 2.698797 CCTACGAATCAAAGAGGCCCTA 59.301 50.000 0.00 0.00 0.00 3.53
4347 5205 1.486726 CCTACGAATCAAAGAGGCCCT 59.513 52.381 0.00 0.00 0.00 5.19
4348 5206 1.485066 TCCTACGAATCAAAGAGGCCC 59.515 52.381 0.00 0.00 0.00 5.80
4349 5207 2.981859 TCCTACGAATCAAAGAGGCC 57.018 50.000 0.00 0.00 0.00 5.19
4350 5208 5.354234 TCAAAATCCTACGAATCAAAGAGGC 59.646 40.000 0.00 0.00 0.00 4.70
4351 5209 6.985188 TCAAAATCCTACGAATCAAAGAGG 57.015 37.500 0.00 0.00 0.00 3.69
4352 5210 9.118236 GTTTTCAAAATCCTACGAATCAAAGAG 57.882 33.333 0.00 0.00 0.00 2.85
4353 5211 7.801315 CGTTTTCAAAATCCTACGAATCAAAGA 59.199 33.333 0.00 0.00 0.00 2.52
4354 5212 7.589954 ACGTTTTCAAAATCCTACGAATCAAAG 59.410 33.333 0.00 0.00 33.60 2.77
4355 5213 7.419204 ACGTTTTCAAAATCCTACGAATCAAA 58.581 30.769 0.00 0.00 33.60 2.69
4356 5214 6.961576 ACGTTTTCAAAATCCTACGAATCAA 58.038 32.000 0.00 0.00 33.60 2.57
4357 5215 6.548441 ACGTTTTCAAAATCCTACGAATCA 57.452 33.333 0.00 0.00 33.60 2.57
4358 5216 8.437742 TCTTACGTTTTCAAAATCCTACGAATC 58.562 33.333 0.00 0.00 33.60 2.52
4359 5217 8.314143 TCTTACGTTTTCAAAATCCTACGAAT 57.686 30.769 0.00 0.00 33.60 3.34
4360 5218 7.712264 TCTTACGTTTTCAAAATCCTACGAA 57.288 32.000 0.00 0.00 33.60 3.85
4361 5219 7.712264 TTCTTACGTTTTCAAAATCCTACGA 57.288 32.000 0.00 0.00 33.60 3.43
4362 5220 9.685005 CTATTCTTACGTTTTCAAAATCCTACG 57.315 33.333 0.00 0.00 35.34 3.51
4363 5221 9.983804 CCTATTCTTACGTTTTCAAAATCCTAC 57.016 33.333 0.00 0.00 0.00 3.18
4364 5222 9.947433 TCCTATTCTTACGTTTTCAAAATCCTA 57.053 29.630 0.00 0.00 0.00 2.94
4365 5223 8.857694 TCCTATTCTTACGTTTTCAAAATCCT 57.142 30.769 0.00 0.00 0.00 3.24
4366 5224 9.902196 TTTCCTATTCTTACGTTTTCAAAATCC 57.098 29.630 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.