Multiple sequence alignment - TraesCS4A01G189600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G189600 chr4A 100.000 4782 0 0 1 4782 468252401 468247620 0.000000e+00 8831.0
1 TraesCS4A01G189600 chr4D 95.256 4237 130 24 1 4201 108010962 108015163 0.000000e+00 6645.0
2 TraesCS4A01G189600 chr4B 94.556 4225 137 38 1 4163 168709051 168704858 0.000000e+00 6442.0
3 TraesCS4A01G189600 chr3D 93.451 565 35 2 4216 4779 504349657 504350220 0.000000e+00 837.0
4 TraesCS4A01G189600 chr3D 87.603 121 11 3 1984 2103 141406650 141406767 2.320000e-28 137.0
5 TraesCS4A01G189600 chr5A 88.616 571 51 8 4214 4782 485529302 485528744 0.000000e+00 682.0
6 TraesCS4A01G189600 chr6D 85.872 545 71 6 4237 4780 77866805 77867344 4.150000e-160 575.0
7 TraesCS4A01G189600 chr6B 80.287 558 90 15 4231 4779 455450461 455451007 2.070000e-108 403.0
8 TraesCS4A01G189600 chr6B 86.957 115 12 2 1983 2097 430583885 430583774 5.020000e-25 126.0
9 TraesCS4A01G189600 chrUn 90.000 110 9 2 1991 2100 277176621 277176514 1.790000e-29 141.0
10 TraesCS4A01G189600 chrUn 90.654 107 8 2 1991 2097 300683334 300683438 1.790000e-29 141.0
11 TraesCS4A01G189600 chr7D 87.603 121 11 3 1984 2103 400205244 400205127 2.320000e-28 137.0
12 TraesCS4A01G189600 chr2A 87.719 114 11 2 1991 2103 23429830 23429719 3.880000e-26 130.0
13 TraesCS4A01G189600 chr3B 80.864 162 28 3 2302 2462 192030505 192030664 1.810000e-24 124.0
14 TraesCS4A01G189600 chr1B 86.842 114 12 2 1991 2103 53255417 53255528 1.810000e-24 124.0
15 TraesCS4A01G189600 chr5B 86.250 80 11 0 2312 2391 38364811 38364732 2.370000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G189600 chr4A 468247620 468252401 4781 True 8831 8831 100.000 1 4782 1 chr4A.!!$R1 4781
1 TraesCS4A01G189600 chr4D 108010962 108015163 4201 False 6645 6645 95.256 1 4201 1 chr4D.!!$F1 4200
2 TraesCS4A01G189600 chr4B 168704858 168709051 4193 True 6442 6442 94.556 1 4163 1 chr4B.!!$R1 4162
3 TraesCS4A01G189600 chr3D 504349657 504350220 563 False 837 837 93.451 4216 4779 1 chr3D.!!$F2 563
4 TraesCS4A01G189600 chr5A 485528744 485529302 558 True 682 682 88.616 4214 4782 1 chr5A.!!$R1 568
5 TraesCS4A01G189600 chr6D 77866805 77867344 539 False 575 575 85.872 4237 4780 1 chr6D.!!$F1 543
6 TraesCS4A01G189600 chr6B 455450461 455451007 546 False 403 403 80.287 4231 4779 1 chr6B.!!$F1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 149 0.521291 GCTTCATACGCTTGGTTGCA 59.479 50.000 0.0 0.0 0.00 4.08 F
183 185 1.507141 CGGAGCTTCTTTGCAACGGT 61.507 55.000 0.0 0.0 34.99 4.83 F
1463 1489 1.754226 GAGAGACCAGATCACTCACCC 59.246 57.143 0.0 0.0 42.77 4.61 F
3238 3296 1.541588 CGTCACAGTCTCTCATCACCA 59.458 52.381 0.0 0.0 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2108 2134 0.535780 TTCAGAGGCAGCAACTGGTG 60.536 55.000 15.07 4.53 45.58 4.17 R
2139 2165 9.337396 TGTGTCTACTTGTTATCTGAAATTTGT 57.663 29.630 0.00 0.00 0.00 2.83 R
3281 3339 1.599419 GCGACTGCACAAACCGAATTT 60.599 47.619 0.00 0.00 42.15 1.82 R
4201 4269 0.234884 CGGACTCGCAGTGGTTTTTC 59.765 55.000 0.00 0.00 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 4.857871 TTACAAGATCTATTGCACGCAC 57.142 40.909 0.00 0.00 33.28 5.34
67 68 3.202906 CACACACTTCCCTTTTCTCGAA 58.797 45.455 0.00 0.00 0.00 3.71
109 111 6.391227 TGTCTCAAGGAATTCTTTTTCCAC 57.609 37.500 5.23 0.00 46.40 4.02
122 124 4.041691 TCTTTTTCCACTTGTAGCTAGGCT 59.958 41.667 0.00 0.00 43.41 4.58
127 129 4.324267 TCCACTTGTAGCTAGGCTTTTTC 58.676 43.478 0.00 0.00 40.44 2.29
138 140 1.130561 AGGCTTTTTCGCTTCATACGC 59.869 47.619 0.00 0.00 0.00 4.42
147 149 0.521291 GCTTCATACGCTTGGTTGCA 59.479 50.000 0.00 0.00 0.00 4.08
149 151 2.584791 CTTCATACGCTTGGTTGCAAC 58.415 47.619 21.59 21.59 0.00 4.17
169 171 4.792521 ACTCCAACTATATGATCGGAGC 57.207 45.455 8.44 0.00 43.14 4.70
183 185 1.507141 CGGAGCTTCTTTGCAACGGT 61.507 55.000 0.00 0.00 34.99 4.83
431 435 4.525912 ACTTCCAATGGCTGCTTTAAAG 57.474 40.909 11.02 11.02 0.00 1.85
435 439 5.289083 TCCAATGGCTGCTTTAAAGTTTT 57.711 34.783 16.38 0.16 0.00 2.43
499 503 7.974504 TCAAAGAAGACTAGGACACCTATTTT 58.025 34.615 0.00 0.00 35.36 1.82
568 576 4.772886 TCTTCCTTCTTATAAGTGGGGC 57.227 45.455 19.50 0.00 0.00 5.80
698 706 3.506398 TGAGGGAATGGGTTTTCCTTTC 58.494 45.455 3.46 0.00 43.94 2.62
712 720 6.294231 GGTTTTCCTTTCTGAAATCAGTCCTC 60.294 42.308 10.06 0.00 39.81 3.71
864 875 5.822132 TGGATTGTTTTCACCATGGAAAT 57.178 34.783 21.47 6.14 36.71 2.17
1069 1093 2.036217 CCTTGCTGCAAGTTCCATCAAA 59.964 45.455 33.16 2.09 39.58 2.69
1087 1111 7.657354 TCCATCAAACCAGATAATTATCACTCG 59.343 37.037 24.00 12.04 35.17 4.18
1161 1185 4.547671 AGGGTAGGAATTCTTCATCGAGA 58.452 43.478 5.23 0.00 0.00 4.04
1175 1199 2.653702 GAGACACGGTGCTGAGCT 59.346 61.111 8.30 0.00 0.00 4.09
1408 1433 6.761099 TTTGTGTGAAGGTGCTAAAGTAAA 57.239 33.333 0.00 0.00 0.00 2.01
1454 1480 6.654161 CAGTTGATTTGAAAGAGAGACCAGAT 59.346 38.462 0.00 0.00 0.00 2.90
1463 1489 1.754226 GAGAGACCAGATCACTCACCC 59.246 57.143 0.00 0.00 42.77 4.61
1514 1540 4.821805 TCCTTCTTCAAAAGTACAAGCCTG 59.178 41.667 0.00 0.00 0.00 4.85
1636 1662 3.068560 ACTTCACGCCGCAAATAAGTTA 58.931 40.909 0.00 0.00 0.00 2.24
1643 1669 6.534436 TCACGCCGCAAATAAGTTAGTATTTA 59.466 34.615 0.00 0.00 33.00 1.40
1646 1672 6.302313 CGCCGCAAATAAGTTAGTATTTATGC 59.698 38.462 0.00 0.00 33.00 3.14
1651 1677 9.878599 GCAAATAAGTTAGTATTTATGCGTGAT 57.121 29.630 0.00 0.00 33.00 3.06
1680 1706 8.567285 TCAAATTCAGATAGTTTTCCTCCTTC 57.433 34.615 0.00 0.00 0.00 3.46
1766 1792 4.259356 TGGAGCTGAATCTGAATGACTTG 58.741 43.478 0.00 0.00 0.00 3.16
1791 1817 4.409901 TGCCTTCTGATGACCATTCAGATA 59.590 41.667 4.38 0.00 39.81 1.98
1864 1890 4.797800 TCTCTTGTCAGATGGAGAACAG 57.202 45.455 0.00 0.00 32.76 3.16
1868 1894 3.257469 TGTCAGATGGAGAACAGCATC 57.743 47.619 0.00 0.00 38.15 3.91
1918 1944 6.812656 GCCACATCATTGTCAATTCATTAACA 59.187 34.615 0.00 0.00 32.34 2.41
1919 1945 7.201461 GCCACATCATTGTCAATTCATTAACAC 60.201 37.037 0.00 0.00 32.34 3.32
2091 2117 5.505181 AAGGTCCTATTCTTCTGAAAGCA 57.495 39.130 0.00 0.00 35.63 3.91
2107 2133 7.542890 TCTGAAAGCAATGTTTCAACTAACAA 58.457 30.769 10.48 0.00 44.00 2.83
2108 2134 7.487829 TCTGAAAGCAATGTTTCAACTAACAAC 59.512 33.333 10.48 0.00 44.00 3.32
2160 2187 9.334693 GCTTCACAAATTTCAGATAACAAGTAG 57.665 33.333 0.00 0.00 0.00 2.57
2226 2284 7.720957 TCTGAGAAATGAGAAGAACCAATTTCA 59.279 33.333 8.61 0.00 36.57 2.69
2314 2372 8.534954 AGATTGCTTTAGTAGTACCATCAGTA 57.465 34.615 0.00 0.00 0.00 2.74
2324 2382 5.016051 AGTACCATCAGTATCAAGTGCAG 57.984 43.478 0.00 0.00 32.28 4.41
2339 2397 5.932303 TCAAGTGCAGTTAATCTCAGTTACC 59.068 40.000 6.43 0.00 0.00 2.85
2723 2781 1.818363 CTGCCTGATGATGCGCTGT 60.818 57.895 9.73 0.00 0.00 4.40
2855 2913 4.077188 GACGCCACGCTGTTGCTC 62.077 66.667 3.98 0.00 36.97 4.26
3062 3120 2.047844 CTGCACCAGACGTCCCTG 60.048 66.667 13.01 4.74 32.44 4.45
3238 3296 1.541588 CGTCACAGTCTCTCATCACCA 59.458 52.381 0.00 0.00 0.00 4.17
3239 3297 2.415224 CGTCACAGTCTCTCATCACCAG 60.415 54.545 0.00 0.00 0.00 4.00
3258 3316 3.003068 CCAGTGATTCGATTCTTGCATCC 59.997 47.826 8.63 0.00 0.00 3.51
3281 3339 3.541996 TTCTGCCATTAATCTCGAGCA 57.458 42.857 7.81 0.00 0.00 4.26
3461 3519 3.838271 GGAGCGAGGGCGTCATCA 61.838 66.667 1.43 0.00 46.35 3.07
3792 3850 1.868519 GCAACCGTAGCTAGAATCGGG 60.869 57.143 20.70 8.37 46.06 5.14
3797 3855 1.269723 CGTAGCTAGAATCGGGCATCA 59.730 52.381 0.00 0.00 0.00 3.07
3936 3999 5.008019 GTGCTTTCAAGATTCAGTTCTGACA 59.992 40.000 1.72 0.00 0.00 3.58
3954 4017 5.880332 TCTGACACCAAATGCTATAGAAACC 59.120 40.000 3.21 0.00 0.00 3.27
3992 4060 7.606456 TCTGACACCAAATGTTAGACTAAATCC 59.394 37.037 0.00 0.00 46.15 3.01
4116 4184 9.856488 GGAAACTATTCTCTTAAAACCCAATTC 57.144 33.333 0.00 0.00 35.79 2.17
4145 4213 6.580963 TCAATTTTCCATTTGTCAACAACG 57.419 33.333 0.00 0.00 35.28 4.10
4174 4242 6.549449 GCATCAATTGCCCAAGTTTGGAATT 61.549 40.000 12.42 8.26 45.90 2.17
4210 4278 8.981724 AAAACTGACTTTTAGAGAAAAACCAC 57.018 30.769 0.00 0.00 34.16 4.16
4211 4279 7.939784 AACTGACTTTTAGAGAAAAACCACT 57.060 32.000 0.00 0.00 34.16 4.00
4212 4280 7.321745 ACTGACTTTTAGAGAAAAACCACTG 57.678 36.000 0.00 0.00 34.16 3.66
4237 4305 3.681835 GTCCCGCTCTGGTGACGT 61.682 66.667 0.00 0.00 35.15 4.34
4239 4307 2.738521 CCCGCTCTGGTGACGTTG 60.739 66.667 0.00 0.00 35.15 4.10
4241 4309 3.414700 CGCTCTGGTGACGTTGGC 61.415 66.667 0.00 0.00 0.00 4.52
4242 4310 3.414700 GCTCTGGTGACGTTGGCG 61.415 66.667 0.00 0.00 44.93 5.69
4255 4323 1.267632 CGTTGGCGTTTTTGTCTCGAA 60.268 47.619 0.00 0.00 0.00 3.71
4378 4450 1.912043 CCTCACCTGATCCTCAAACCT 59.088 52.381 0.00 0.00 0.00 3.50
4397 4469 2.031120 CTTCCACCAAAACCTTCTGCA 58.969 47.619 0.00 0.00 0.00 4.41
4440 4513 4.060205 TCGTAAAACACCTGTTTCTAGGC 58.940 43.478 3.92 0.00 46.47 3.93
4509 4584 3.376918 GGTTGCTGAAGGGCCTGC 61.377 66.667 6.92 5.31 0.00 4.85
4759 4834 2.420687 GGAAGGCGATTGAAGATGGACT 60.421 50.000 0.00 0.00 0.00 3.85
4779 4854 6.775142 TGGACTATGGATGTTTGACAAAGAAA 59.225 34.615 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.833794 TCGAGAAAAGGGAAGTGTGTG 58.166 47.619 0.00 0.00 0.00 3.82
78 80 9.745018 AAAAGAATTCCTTGAGACAAGATATCA 57.255 29.630 12.25 0.00 34.79 2.15
109 111 3.003480 AGCGAAAAAGCCTAGCTACAAG 58.997 45.455 0.00 0.00 38.25 3.16
122 124 2.550606 ACCAAGCGTATGAAGCGAAAAA 59.449 40.909 0.00 0.00 40.04 1.94
127 129 0.521242 GCAACCAAGCGTATGAAGCG 60.521 55.000 0.00 0.00 40.04 4.68
138 140 5.647658 TCATATAGTTGGAGTTGCAACCAAG 59.352 40.000 25.62 10.70 45.08 3.61
147 149 4.835615 AGCTCCGATCATATAGTTGGAGTT 59.164 41.667 17.80 12.46 43.83 3.01
149 151 5.184864 AGAAGCTCCGATCATATAGTTGGAG 59.815 44.000 14.49 14.49 44.57 3.86
169 171 2.577449 AAACCACCGTTGCAAAGAAG 57.423 45.000 14.32 5.59 30.72 2.85
435 439 7.311092 TGGATTAGTAGAAGTTGACCTGAAA 57.689 36.000 0.00 0.00 0.00 2.69
568 576 2.674852 AGACGATAGCAAAGCATGTGTG 59.325 45.455 0.00 0.00 42.67 3.82
671 679 4.142249 GGAAAACCCATTCCCTCAAATACG 60.142 45.833 0.00 0.00 42.57 3.06
698 706 7.762128 AGGAACAACCGAGGACTGATTTCAG 62.762 48.000 6.03 6.03 45.66 3.02
712 720 4.893424 TCAGAAAAGAAAGGAACAACCG 57.107 40.909 0.00 0.00 44.74 4.44
1087 1111 8.311109 AGACTGAAGAAGGAGAAGAACTAAATC 58.689 37.037 0.00 0.00 0.00 2.17
1093 1117 4.322424 GGGAGACTGAAGAAGGAGAAGAAC 60.322 50.000 0.00 0.00 0.00 3.01
1161 1185 0.609406 TAGAGAGCTCAGCACCGTGT 60.609 55.000 17.77 0.00 0.00 4.49
1175 1199 6.075949 ACCTACCTGTAGTGTTCATAGAGA 57.924 41.667 3.80 0.00 0.00 3.10
1227 1251 2.290367 CACGGTGACTTTGCTTCATCAA 59.710 45.455 0.74 0.00 0.00 2.57
1441 1467 3.096092 GGTGAGTGATCTGGTCTCTCTT 58.904 50.000 17.87 0.00 44.18 2.85
1448 1474 1.544825 CCACGGGTGAGTGATCTGGT 61.545 60.000 0.00 0.00 44.43 4.00
1454 1480 2.741092 GAAGCCACGGGTGAGTGA 59.259 61.111 0.00 0.00 44.43 3.41
1475 1501 4.706035 AGAAGGATGAAGATGATGCTGAC 58.294 43.478 0.00 0.00 0.00 3.51
1636 1662 7.658179 ATTTGATCGATCACGCATAAATACT 57.342 32.000 27.28 1.48 36.36 2.12
1643 1669 4.122046 TCTGAATTTGATCGATCACGCAT 58.878 39.130 27.28 16.22 36.36 4.73
1646 1672 6.999956 ACTATCTGAATTTGATCGATCACG 57.000 37.500 27.28 11.96 36.36 4.35
1651 1677 7.495934 GGAGGAAAACTATCTGAATTTGATCGA 59.504 37.037 0.00 0.00 0.00 3.59
1680 1706 3.073086 TGTGAAACACAGACCACCG 57.927 52.632 0.25 0.00 45.67 4.94
1766 1792 1.674962 GAATGGTCATCAGAAGGCAGC 59.325 52.381 0.00 0.00 0.00 5.25
1864 1890 0.674895 AAGCTGTCCAAGTCCGATGC 60.675 55.000 0.00 0.00 0.00 3.91
1868 1894 1.813513 ATCAAAGCTGTCCAAGTCCG 58.186 50.000 0.00 0.00 0.00 4.79
1918 1944 2.355126 CGCAGAGCTCGTGTGTGT 60.355 61.111 8.37 0.00 0.00 3.72
1919 1945 2.355126 ACGCAGAGCTCGTGTGTG 60.355 61.111 22.94 18.08 37.26 3.82
2091 2117 6.524101 ACTGGTGTTGTTAGTTGAAACATT 57.476 33.333 0.00 0.00 39.04 2.71
2107 2133 1.228063 CAGAGGCAGCAACTGGTGT 60.228 57.895 10.36 0.00 44.70 4.16
2108 2134 0.535780 TTCAGAGGCAGCAACTGGTG 60.536 55.000 15.07 4.53 45.58 4.17
2139 2165 9.337396 TGTGTCTACTTGTTATCTGAAATTTGT 57.663 29.630 0.00 0.00 0.00 2.83
2314 2372 6.595716 GGTAACTGAGATTAACTGCACTTGAT 59.404 38.462 0.00 0.00 0.00 2.57
2339 2397 3.969117 TGCAGCATATTAAGCTTTCGG 57.031 42.857 3.20 0.00 41.14 4.30
2723 2781 2.416678 CGGTTTTTGCTGCTGCCA 59.583 55.556 13.47 0.00 38.71 4.92
3062 3120 3.279116 TGGCTGCACACGAAGCAC 61.279 61.111 0.50 0.00 41.36 4.40
3092 3150 2.670592 TCGTCGCCGTCCTTCTCA 60.671 61.111 0.00 0.00 35.01 3.27
3185 3243 2.203015 ATTCGTTCCGGGATGCGG 60.203 61.111 17.42 0.00 0.00 5.69
3238 3296 2.868583 CGGATGCAAGAATCGAATCACT 59.131 45.455 2.82 0.00 0.00 3.41
3239 3297 2.866156 TCGGATGCAAGAATCGAATCAC 59.134 45.455 2.82 0.00 0.00 3.06
3258 3316 3.122613 GCTCGAGATTAATGGCAGAATCG 59.877 47.826 18.75 9.31 37.19 3.34
3281 3339 1.599419 GCGACTGCACAAACCGAATTT 60.599 47.619 0.00 0.00 42.15 1.82
3461 3519 4.766088 GTACGTCGGCGCGAAGGT 62.766 66.667 25.37 12.95 39.43 3.50
3698 3756 1.675641 GCTTCACCATCTTGGCCGT 60.676 57.895 0.00 0.00 42.67 5.68
3792 3850 1.127213 CCAACTTGCGCAAATTGATGC 59.873 47.619 37.44 0.00 42.94 3.91
3797 3855 0.879839 GGCACCAACTTGCGCAAATT 60.880 50.000 25.01 18.62 44.00 1.82
3936 3999 6.680378 GCGATTTGGTTTCTATAGCATTTGGT 60.680 38.462 0.00 0.00 0.00 3.67
3954 4017 2.266554 GGTGTCAGAGAGAGCGATTTG 58.733 52.381 0.00 0.00 0.00 2.32
3992 4060 3.575256 AGAGATGCAGATTAGAGCTGAGG 59.425 47.826 0.00 0.00 35.39 3.86
4067 4135 9.603189 TTCCCAAAATTAGGGTTTTCTTGTATA 57.397 29.630 13.90 0.00 46.82 1.47
4068 4136 8.499288 TTCCCAAAATTAGGGTTTTCTTGTAT 57.501 30.769 13.90 0.00 46.82 2.29
4069 4137 7.916077 TTCCCAAAATTAGGGTTTTCTTGTA 57.084 32.000 13.90 0.00 46.82 2.41
4093 4161 9.025041 CCAGAATTGGGTTTTAAGAGAATAGTT 57.975 33.333 0.00 0.00 41.05 2.24
4116 4184 6.040209 TGACAAATGGAAAATTGATCCCAG 57.960 37.500 7.81 0.00 36.04 4.45
4164 4232 9.719355 AGTTTTAAAACAGAACAATTCCAAACT 57.281 25.926 28.03 3.11 41.30 2.66
4185 4253 8.803235 AGTGGTTTTTCTCTAAAAGTCAGTTTT 58.197 29.630 0.00 0.00 41.45 2.43
4201 4269 0.234884 CGGACTCGCAGTGGTTTTTC 59.765 55.000 0.00 0.00 0.00 2.29
4202 4270 0.463116 ACGGACTCGCAGTGGTTTTT 60.463 50.000 0.00 0.00 40.63 1.94
4203 4271 0.878961 GACGGACTCGCAGTGGTTTT 60.879 55.000 0.00 0.00 40.63 2.43
4204 4272 1.300697 GACGGACTCGCAGTGGTTT 60.301 57.895 0.00 0.00 40.63 3.27
4205 4273 2.338984 GACGGACTCGCAGTGGTT 59.661 61.111 0.00 0.00 40.63 3.67
4206 4274 3.681835 GGACGGACTCGCAGTGGT 61.682 66.667 0.00 0.00 40.63 4.16
4207 4275 4.436998 GGGACGGACTCGCAGTGG 62.437 72.222 0.00 0.00 40.63 4.00
4237 4305 3.701532 ATTTCGAGACAAAAACGCCAA 57.298 38.095 0.00 0.00 0.00 4.52
4239 4307 2.977829 GGAATTTCGAGACAAAAACGCC 59.022 45.455 0.00 0.00 0.00 5.68
4241 4309 3.059461 TCCGGAATTTCGAGACAAAAACG 60.059 43.478 7.98 0.00 0.00 3.60
4242 4310 4.464112 CTCCGGAATTTCGAGACAAAAAC 58.536 43.478 7.98 0.00 0.00 2.43
4243 4311 3.500680 CCTCCGGAATTTCGAGACAAAAA 59.499 43.478 7.98 0.00 0.00 1.94
4251 4319 0.249322 GATCGCCTCCGGAATTTCGA 60.249 55.000 7.98 12.22 34.56 3.71
4252 4320 1.222115 GGATCGCCTCCGGAATTTCG 61.222 60.000 5.23 6.79 33.29 3.46
4255 4323 2.829592 GGGATCGCCTCCGGAATT 59.170 61.111 5.23 0.00 46.01 2.17
4378 4450 2.151502 TGCAGAAGGTTTTGGTGGAA 57.848 45.000 0.00 0.00 0.00 3.53
4397 4469 2.189521 CGCGCCCTAGGGAAACAT 59.810 61.111 33.21 0.00 37.50 2.71
4440 4513 4.789123 CTTACCGCCCCAACCCCG 62.789 72.222 0.00 0.00 0.00 5.73
4509 4584 2.563179 TCCTCTCTTCCTCCGAAAGTTG 59.437 50.000 0.00 0.00 0.00 3.16
4673 4748 4.015084 CTCCAATCTCCTTGCAGTCAATT 58.985 43.478 0.00 0.00 33.20 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.