Multiple sequence alignment - TraesCS4A01G189300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G189300 chr4A 100.000 2276 0 0 1 2276 468211704 468209429 0.000000e+00 4204.0
1 TraesCS4A01G189300 chr4A 80.920 1630 199 60 5 1594 518855571 518857128 0.000000e+00 1184.0
2 TraesCS4A01G189300 chr4B 87.877 1592 149 24 4 1582 168575295 168573735 0.000000e+00 1831.0
3 TraesCS4A01G189300 chr4B 96.154 104 3 1 2128 2230 168567519 168567416 3.890000e-38 169.0
4 TraesCS4A01G189300 chr1D 84.746 1593 199 18 1 1582 141896593 141898152 0.000000e+00 1555.0
5 TraesCS4A01G189300 chr1D 85.214 1285 151 18 4 1277 338745331 338746587 0.000000e+00 1284.0
6 TraesCS4A01G189300 chr1D 85.106 799 88 14 4 797 473796683 473795911 0.000000e+00 787.0
7 TraesCS4A01G189300 chr1D 80.398 704 91 25 900 1596 114213005 114212342 2.030000e-135 492.0
8 TraesCS4A01G189300 chr1D 85.321 109 14 2 1583 1690 338746719 338746826 6.650000e-21 111.0
9 TraesCS4A01G189300 chr1B 85.316 1328 162 17 262 1582 196058814 196060115 0.000000e+00 1341.0
10 TraesCS4A01G189300 chr1A 81.965 1608 210 31 5 1582 148747791 148746234 0.000000e+00 1290.0
11 TraesCS4A01G189300 chr1A 88.889 63 6 1 1487 1548 480576111 480576173 2.420000e-10 76.8
12 TraesCS4A01G189300 chr5A 79.861 1584 228 44 9 1574 354970617 354972127 0.000000e+00 1074.0
13 TraesCS4A01G189300 chr5A 85.246 122 18 0 2155 2276 108279643 108279764 2.370000e-25 126.0
14 TraesCS4A01G189300 chr4D 87.820 821 74 10 1 819 108047807 108048603 0.000000e+00 939.0
15 TraesCS4A01G189300 chr4D 87.790 819 73 11 772 1582 108048658 108049457 0.000000e+00 933.0
16 TraesCS4A01G189300 chr4D 85.859 396 52 2 900 1291 509440486 509440091 3.500000e-113 418.0
17 TraesCS4A01G189300 chr4D 94.074 135 5 2 2097 2230 108051156 108051288 3.830000e-48 202.0
18 TraesCS4A01G189300 chr4D 88.276 145 12 3 1736 1876 108049499 108049642 3.890000e-38 169.0
19 TraesCS4A01G189300 chr4D 97.727 44 1 0 1583 1626 108049417 108049460 2.420000e-10 76.8
20 TraesCS4A01G189300 chr7A 84.625 787 102 12 4 786 238871690 238870919 0.000000e+00 765.0
21 TraesCS4A01G189300 chr7A 84.783 92 13 1 1599 1690 666967602 666967692 8.660000e-15 91.6
22 TraesCS4A01G189300 chr2B 83.511 843 104 12 1 839 449828290 449829101 0.000000e+00 754.0
23 TraesCS4A01G189300 chr3D 84.197 753 94 10 624 1371 116088058 116088790 0.000000e+00 708.0
24 TraesCS4A01G189300 chr3D 87.963 108 12 1 1583 1690 116149619 116149725 2.370000e-25 126.0
25 TraesCS4A01G189300 chr7B 82.763 818 101 28 9 819 413575965 413576749 0.000000e+00 693.0
26 TraesCS4A01G189300 chr7B 89.024 82 9 0 1597 1678 638443703 638443784 4.000000e-18 102.0
27 TraesCS4A01G189300 chr5D 85.632 522 57 9 900 1413 512389662 512390173 1.200000e-147 532.0
28 TraesCS4A01G189300 chr5D 86.087 115 16 0 1583 1697 512390273 512390387 8.540000e-25 124.0
29 TraesCS4A01G189300 chr3A 81.301 615 92 10 806 1413 51696290 51696888 5.690000e-131 477.0
30 TraesCS4A01G189300 chr3A 80.155 645 107 11 1 642 45747857 45748483 1.590000e-126 462.0
31 TraesCS4A01G189300 chr5B 85.011 467 60 6 201 664 439876518 439876977 1.230000e-127 466.0
32 TraesCS4A01G189300 chr5B 85.227 88 11 1 1447 1534 439877684 439877769 3.110000e-14 89.8
33 TraesCS4A01G189300 chr2D 78.887 521 88 14 4 521 200799907 200799406 1.300000e-87 333.0
34 TraesCS4A01G189300 chr2D 84.685 111 17 0 1583 1693 326749141 326749031 6.650000e-21 111.0
35 TraesCS4A01G189300 chr7D 88.235 85 9 1 1597 1680 576093819 576093903 1.440000e-17 100.0
36 TraesCS4A01G189300 chr3B 100.000 30 0 0 1583 1612 55952248 55952277 3.160000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G189300 chr4A 468209429 468211704 2275 True 4204.00 4204 100.0000 1 2276 1 chr4A.!!$R1 2275
1 TraesCS4A01G189300 chr4A 518855571 518857128 1557 False 1184.00 1184 80.9200 5 1594 1 chr4A.!!$F1 1589
2 TraesCS4A01G189300 chr4B 168573735 168575295 1560 True 1831.00 1831 87.8770 4 1582 1 chr4B.!!$R2 1578
3 TraesCS4A01G189300 chr1D 141896593 141898152 1559 False 1555.00 1555 84.7460 1 1582 1 chr1D.!!$F1 1581
4 TraesCS4A01G189300 chr1D 473795911 473796683 772 True 787.00 787 85.1060 4 797 1 chr1D.!!$R2 793
5 TraesCS4A01G189300 chr1D 338745331 338746826 1495 False 697.50 1284 85.2675 4 1690 2 chr1D.!!$F2 1686
6 TraesCS4A01G189300 chr1D 114212342 114213005 663 True 492.00 492 80.3980 900 1596 1 chr1D.!!$R1 696
7 TraesCS4A01G189300 chr1B 196058814 196060115 1301 False 1341.00 1341 85.3160 262 1582 1 chr1B.!!$F1 1320
8 TraesCS4A01G189300 chr1A 148746234 148747791 1557 True 1290.00 1290 81.9650 5 1582 1 chr1A.!!$R1 1577
9 TraesCS4A01G189300 chr5A 354970617 354972127 1510 False 1074.00 1074 79.8610 9 1574 1 chr5A.!!$F2 1565
10 TraesCS4A01G189300 chr4D 108047807 108051288 3481 False 463.96 939 91.1374 1 2230 5 chr4D.!!$F1 2229
11 TraesCS4A01G189300 chr7A 238870919 238871690 771 True 765.00 765 84.6250 4 786 1 chr7A.!!$R1 782
12 TraesCS4A01G189300 chr2B 449828290 449829101 811 False 754.00 754 83.5110 1 839 1 chr2B.!!$F1 838
13 TraesCS4A01G189300 chr3D 116088058 116088790 732 False 708.00 708 84.1970 624 1371 1 chr3D.!!$F1 747
14 TraesCS4A01G189300 chr7B 413575965 413576749 784 False 693.00 693 82.7630 9 819 1 chr7B.!!$F1 810
15 TraesCS4A01G189300 chr5D 512389662 512390387 725 False 328.00 532 85.8595 900 1697 2 chr5D.!!$F1 797
16 TraesCS4A01G189300 chr3A 51696290 51696888 598 False 477.00 477 81.3010 806 1413 1 chr3A.!!$F2 607
17 TraesCS4A01G189300 chr3A 45747857 45748483 626 False 462.00 462 80.1550 1 642 1 chr3A.!!$F1 641
18 TraesCS4A01G189300 chr5B 439876518 439877769 1251 False 277.90 466 85.1190 201 1534 2 chr5B.!!$F1 1333
19 TraesCS4A01G189300 chr2D 200799406 200799907 501 True 333.00 333 78.8870 4 521 1 chr2D.!!$R1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
509 541 0.107945 CTGAGGAAGAAAGCCCTCCG 60.108 60.0 0.0 0.0 46.43 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2099 3672 0.039708 GGACTGTTGCTTTGCTGAGC 60.04 55.0 0.0 0.0 43.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.265056 GGTTGGAGCGGTGGGTGT 62.265 66.667 0.00 0.00 0.00 4.16
41 45 1.765074 GTGGGTGTCCTTGGCCTTA 59.235 57.895 3.32 0.00 0.00 2.69
75 93 2.202756 GGACCACCGTCTCATCGC 60.203 66.667 0.00 0.00 39.15 4.58
101 119 1.032794 CGGAGTCAGGATCGATTGGA 58.967 55.000 0.00 0.00 0.00 3.53
164 183 1.681486 CCGCTTCTTCCTCCTCCTCC 61.681 65.000 0.00 0.00 0.00 4.30
166 185 1.119684 GCTTCTTCCTCCTCCTCCTC 58.880 60.000 0.00 0.00 0.00 3.71
258 279 2.458620 GAGCCCTGTACTCCTGTACTT 58.541 52.381 7.67 0.00 46.70 2.24
283 306 1.520342 CTTGCCCTCTGTCTAGCGC 60.520 63.158 0.00 0.00 0.00 5.92
360 390 4.101741 CCCTTCACTAGGTCAGGAATTAGG 59.898 50.000 5.19 0.00 43.07 2.69
372 402 4.844085 TCAGGAATTAGGGTCTTCAACTCA 59.156 41.667 0.00 0.00 0.00 3.41
382 412 4.326826 GGTCTTCAACTCATCCATTGTCA 58.673 43.478 0.00 0.00 0.00 3.58
394 424 2.711009 TCCATTGTCACCTTCTTCACCT 59.289 45.455 0.00 0.00 0.00 4.00
401 431 4.346709 TGTCACCTTCTTCACCTCAATACA 59.653 41.667 0.00 0.00 0.00 2.29
445 475 0.948141 GCTGCTGAAGTTCGAGCACT 60.948 55.000 19.55 0.00 40.30 4.40
449 479 2.296190 TGCTGAAGTTCGAGCACTCTTA 59.704 45.455 19.55 3.55 40.30 2.10
509 541 0.107945 CTGAGGAAGAAAGCCCTCCG 60.108 60.000 0.00 0.00 46.43 4.63
537 569 2.478803 CCAAGGGAAGGGGTTGGGT 61.479 63.158 0.00 0.00 37.64 4.51
539 571 0.831711 CAAGGGAAGGGGTTGGGTTG 60.832 60.000 0.00 0.00 0.00 3.77
589 628 5.374154 TGGATAGGAGGAAGAGTGATAGACT 59.626 44.000 0.00 0.00 37.76 3.24
602 641 6.156949 AGAGTGATAGACTGAGAAGAGAGAGT 59.843 42.308 0.00 0.00 33.83 3.24
819 1046 1.604593 GCATGCAAGGAGGTGGTGT 60.605 57.895 14.21 0.00 0.00 4.16
845 1072 2.200337 GGAGGTTGTGCCAACCACC 61.200 63.158 28.02 26.88 44.01 4.61
885 1112 1.153647 GATGACGATGTGGTGGCGA 60.154 57.895 0.00 0.00 0.00 5.54
954 1185 2.043953 GATGAGGGTGGGCCAACC 60.044 66.667 34.05 34.05 42.50 3.77
1079 1311 2.046023 CACCGGCTGCTCATGGAA 60.046 61.111 0.00 0.00 0.00 3.53
1117 1349 1.347707 TGAACGGCAGGATCACTCTTT 59.652 47.619 0.00 0.00 0.00 2.52
1133 1365 1.929494 TCTTTATCAGGGTTGGGCCAT 59.071 47.619 7.26 0.00 39.65 4.40
1159 1391 0.877649 CGCCGTCCATCAGATCAAGG 60.878 60.000 0.00 0.00 0.00 3.61
1320 1563 4.141937 TGCTTCAGCTGGTTTAGTATCGAT 60.142 41.667 15.13 2.16 42.66 3.59
1325 1568 9.862371 CTTCAGCTGGTTTAGTATCGATTATAT 57.138 33.333 15.13 0.00 0.00 0.86
1326 1569 9.856488 TTCAGCTGGTTTAGTATCGATTATATC 57.144 33.333 15.13 0.00 0.00 1.63
1355 1598 3.042887 CGTACTGCTTTGCTTGAAAACC 58.957 45.455 0.00 0.00 0.00 3.27
1357 1600 1.748493 ACTGCTTTGCTTGAAAACCGA 59.252 42.857 0.00 0.00 0.00 4.69
1361 1604 5.414454 ACTGCTTTGCTTGAAAACCGATATA 59.586 36.000 0.00 0.00 0.00 0.86
1413 1658 8.726988 TGCTTGTTATGGTTTAGAACTATGTTC 58.273 33.333 2.54 2.54 34.25 3.18
1444 1690 9.813446 GTGGTAGTATATTAAACTGCTTACTGT 57.187 33.333 0.00 0.00 31.13 3.55
1475 1721 4.608948 TTTGTGTGTCTTTGGGTTGTTT 57.391 36.364 0.00 0.00 0.00 2.83
1508 1754 0.107831 GTGCCAGTAACCTCACCACA 59.892 55.000 0.00 0.00 0.00 4.17
1549 1795 2.888834 AACAGGTGTTGCATGAAACC 57.111 45.000 14.22 0.00 36.80 3.27
1550 1796 1.774110 ACAGGTGTTGCATGAAACCA 58.226 45.000 14.22 0.00 35.01 3.67
1551 1797 2.106566 ACAGGTGTTGCATGAAACCAA 58.893 42.857 14.22 0.00 35.01 3.67
1552 1798 2.499289 ACAGGTGTTGCATGAAACCAAA 59.501 40.909 14.22 0.00 35.01 3.28
1553 1799 3.134442 ACAGGTGTTGCATGAAACCAAAT 59.866 39.130 14.22 0.00 35.01 2.32
1554 1800 4.343526 ACAGGTGTTGCATGAAACCAAATA 59.656 37.500 14.22 0.00 35.01 1.40
1555 1801 5.011943 ACAGGTGTTGCATGAAACCAAATAT 59.988 36.000 14.22 0.00 35.01 1.28
1556 1802 5.577945 CAGGTGTTGCATGAAACCAAATATC 59.422 40.000 14.22 0.00 35.01 1.63
1557 1803 5.245751 AGGTGTTGCATGAAACCAAATATCA 59.754 36.000 14.22 0.00 35.01 2.15
1558 1804 6.070653 AGGTGTTGCATGAAACCAAATATCAT 60.071 34.615 14.22 0.00 35.01 2.45
1564 1810 6.838198 CATGAAACCAAATATCATGCCTTG 57.162 37.500 2.44 0.00 42.60 3.61
1565 1811 5.999205 TGAAACCAAATATCATGCCTTGT 57.001 34.783 0.00 0.00 0.00 3.16
1566 1812 5.722263 TGAAACCAAATATCATGCCTTGTG 58.278 37.500 0.00 0.00 0.00 3.33
1567 1813 5.245751 TGAAACCAAATATCATGCCTTGTGT 59.754 36.000 0.00 0.00 0.00 3.72
1568 1814 5.743636 AACCAAATATCATGCCTTGTGTT 57.256 34.783 0.00 0.00 0.00 3.32
1569 1815 5.743636 ACCAAATATCATGCCTTGTGTTT 57.256 34.783 0.00 0.00 0.00 2.83
1570 1816 6.112927 ACCAAATATCATGCCTTGTGTTTT 57.887 33.333 0.00 0.00 0.00 2.43
1571 1817 6.165577 ACCAAATATCATGCCTTGTGTTTTC 58.834 36.000 0.00 0.00 0.00 2.29
1572 1818 5.289193 CCAAATATCATGCCTTGTGTTTTCG 59.711 40.000 0.00 0.00 0.00 3.46
1573 1819 5.643379 AATATCATGCCTTGTGTTTTCGT 57.357 34.783 0.00 0.00 0.00 3.85
1574 1820 3.559238 ATCATGCCTTGTGTTTTCGTC 57.441 42.857 0.00 0.00 0.00 4.20
1575 1821 2.571212 TCATGCCTTGTGTTTTCGTCT 58.429 42.857 0.00 0.00 0.00 4.18
1576 1822 3.734463 TCATGCCTTGTGTTTTCGTCTA 58.266 40.909 0.00 0.00 0.00 2.59
1577 1823 4.130857 TCATGCCTTGTGTTTTCGTCTAA 58.869 39.130 0.00 0.00 0.00 2.10
1578 1824 4.576873 TCATGCCTTGTGTTTTCGTCTAAA 59.423 37.500 0.00 0.00 0.00 1.85
1579 1825 4.281525 TGCCTTGTGTTTTCGTCTAAAC 57.718 40.909 0.00 0.00 38.26 2.01
1580 1826 3.690139 TGCCTTGTGTTTTCGTCTAAACA 59.310 39.130 8.43 8.43 43.62 2.83
1581 1827 4.156190 TGCCTTGTGTTTTCGTCTAAACAA 59.844 37.500 12.35 5.57 46.27 2.83
1626 1876 2.823984 TGTTTCCGTCTAAACAAGCGA 58.176 42.857 5.73 0.00 44.23 4.93
1636 1886 3.695060 TCTAAACAAGCGACCAACCAAAA 59.305 39.130 0.00 0.00 0.00 2.44
1638 1888 2.577449 ACAAGCGACCAACCAAAAAG 57.423 45.000 0.00 0.00 0.00 2.27
1659 1909 1.677052 GTCACTTTTTGTTACGCCCCA 59.323 47.619 0.00 0.00 0.00 4.96
1660 1910 2.295070 GTCACTTTTTGTTACGCCCCAT 59.705 45.455 0.00 0.00 0.00 4.00
1662 1912 3.502979 TCACTTTTTGTTACGCCCCATAC 59.497 43.478 0.00 0.00 0.00 2.39
1664 1914 3.504520 ACTTTTTGTTACGCCCCATACAG 59.495 43.478 0.00 0.00 0.00 2.74
1665 1915 2.116827 TTTGTTACGCCCCATACAGG 57.883 50.000 0.00 0.00 37.03 4.00
1673 1923 1.533711 CCCCATACAGGCTTGAGGG 59.466 63.158 15.28 15.28 35.59 4.30
1674 1924 1.281925 CCCCATACAGGCTTGAGGGT 61.282 60.000 18.75 0.00 34.70 4.34
1675 1925 1.507140 CCCATACAGGCTTGAGGGTA 58.493 55.000 1.40 0.00 35.39 3.69
1676 1926 2.057922 CCCATACAGGCTTGAGGGTAT 58.942 52.381 1.40 0.00 35.39 2.73
1677 1927 2.224621 CCCATACAGGCTTGAGGGTATG 60.225 54.545 1.40 12.57 41.57 2.39
1678 1928 2.498167 CATACAGGCTTGAGGGTATGC 58.502 52.381 1.40 0.00 37.40 3.14
1679 1929 1.578897 TACAGGCTTGAGGGTATGCA 58.421 50.000 1.40 0.00 0.00 3.96
1680 1930 0.698238 ACAGGCTTGAGGGTATGCAA 59.302 50.000 1.40 0.00 0.00 4.08
1681 1931 1.075374 ACAGGCTTGAGGGTATGCAAA 59.925 47.619 1.40 0.00 0.00 3.68
1682 1932 1.474077 CAGGCTTGAGGGTATGCAAAC 59.526 52.381 0.00 0.00 0.00 2.93
1683 1933 1.075374 AGGCTTGAGGGTATGCAAACA 59.925 47.619 0.00 0.00 0.00 2.83
1684 1934 1.892474 GGCTTGAGGGTATGCAAACAA 59.108 47.619 0.00 0.00 0.00 2.83
1685 1935 2.352715 GGCTTGAGGGTATGCAAACAAC 60.353 50.000 0.00 0.00 0.00 3.32
1686 1936 2.352715 GCTTGAGGGTATGCAAACAACC 60.353 50.000 0.00 0.00 0.00 3.77
1687 1937 2.666272 TGAGGGTATGCAAACAACCA 57.334 45.000 11.54 0.00 34.83 3.67
1688 1938 2.950781 TGAGGGTATGCAAACAACCAA 58.049 42.857 11.54 0.00 34.83 3.67
1689 1939 3.300388 TGAGGGTATGCAAACAACCAAA 58.700 40.909 11.54 0.00 34.83 3.28
1690 1940 3.900601 TGAGGGTATGCAAACAACCAAAT 59.099 39.130 11.54 0.00 34.83 2.32
1691 1941 5.080337 TGAGGGTATGCAAACAACCAAATA 58.920 37.500 11.54 0.00 34.83 1.40
1694 1944 7.397476 TGAGGGTATGCAAACAACCAAATAATA 59.603 33.333 11.54 0.00 34.83 0.98
1701 1951 5.576774 GCAAACAACCAAATAATACAGGCTC 59.423 40.000 0.00 0.00 0.00 4.70
1723 1973 3.356290 GAGGGTATGCAGACAACCAAAT 58.644 45.455 14.36 0.00 34.83 2.32
1724 1974 3.356290 AGGGTATGCAGACAACCAAATC 58.644 45.455 14.36 0.00 34.83 2.17
1726 1976 3.129287 GGGTATGCAGACAACCAAATCAG 59.871 47.826 14.36 0.00 34.83 2.90
1727 1977 3.428045 GGTATGCAGACAACCAAATCAGC 60.428 47.826 14.36 0.00 33.28 4.26
1728 1978 0.592637 TGCAGACAACCAAATCAGCG 59.407 50.000 0.00 0.00 30.47 5.18
1729 1979 0.109597 GCAGACAACCAAATCAGCGG 60.110 55.000 0.00 0.00 0.00 5.52
1730 1980 1.522668 CAGACAACCAAATCAGCGGA 58.477 50.000 0.00 0.00 0.00 5.54
1731 1981 1.879380 CAGACAACCAAATCAGCGGAA 59.121 47.619 0.00 0.00 0.00 4.30
1732 1982 2.095567 CAGACAACCAAATCAGCGGAAG 60.096 50.000 0.00 0.00 0.00 3.46
1766 2020 2.559998 AAGTTGCTGAACCAAACACG 57.440 45.000 0.00 0.00 31.81 4.49
1771 2025 1.805428 GCTGAACCAAACACGCCCAT 61.805 55.000 0.00 0.00 0.00 4.00
1774 2028 2.294791 CTGAACCAAACACGCCCATAAA 59.705 45.455 0.00 0.00 0.00 1.40
1778 2032 3.692690 ACCAAACACGCCCATAAAGTAT 58.307 40.909 0.00 0.00 0.00 2.12
1793 2047 7.155328 CCATAAAGTATCTACTCGGCATCTTT 58.845 38.462 0.00 0.00 34.99 2.52
1842 2096 6.527057 TCTTTAGAACCCTAGAGTACTTGC 57.473 41.667 0.00 0.00 31.20 4.01
1860 2114 3.194005 TGCTAGAAATTGGTCGATCCC 57.806 47.619 0.00 0.00 34.77 3.85
1861 2115 2.771943 TGCTAGAAATTGGTCGATCCCT 59.228 45.455 0.00 0.00 34.77 4.20
1863 2117 2.717639 AGAAATTGGTCGATCCCTGG 57.282 50.000 0.00 0.00 34.77 4.45
1876 2130 3.752868 CGATCCCTGGTATGTACCCTGTA 60.753 52.174 6.74 0.00 45.87 2.74
1877 2131 4.426704 GATCCCTGGTATGTACCCTGTAT 58.573 47.826 6.74 0.00 45.87 2.29
1878 2132 3.853207 TCCCTGGTATGTACCCTGTATC 58.147 50.000 6.74 0.00 45.87 2.24
1879 2133 3.469771 TCCCTGGTATGTACCCTGTATCT 59.530 47.826 6.74 0.00 45.87 1.98
1880 2134 4.078219 TCCCTGGTATGTACCCTGTATCTT 60.078 45.833 6.74 0.00 45.87 2.40
1881 2135 4.658901 CCCTGGTATGTACCCTGTATCTTT 59.341 45.833 6.74 0.00 45.87 2.52
1882 2136 5.132144 CCCTGGTATGTACCCTGTATCTTTT 59.868 44.000 6.74 0.00 45.87 2.27
1883 2137 6.353602 CCCTGGTATGTACCCTGTATCTTTTT 60.354 42.308 6.74 0.00 45.87 1.94
1885 2139 7.713942 CCTGGTATGTACCCTGTATCTTTTTAC 59.286 40.741 6.74 0.00 45.87 2.01
1886 2140 8.383374 TGGTATGTACCCTGTATCTTTTTACT 57.617 34.615 6.74 0.00 45.87 2.24
1887 2141 8.828751 TGGTATGTACCCTGTATCTTTTTACTT 58.171 33.333 6.74 0.00 45.87 2.24
1888 2142 9.676861 GGTATGTACCCTGTATCTTTTTACTTT 57.323 33.333 0.00 0.00 40.53 2.66
1892 2146 9.856162 TGTACCCTGTATCTTTTTACTTTTCTT 57.144 29.630 0.00 0.00 0.00 2.52
1894 2148 8.405418 ACCCTGTATCTTTTTACTTTTCTTCC 57.595 34.615 0.00 0.00 0.00 3.46
1895 2149 7.174426 ACCCTGTATCTTTTTACTTTTCTTCCG 59.826 37.037 0.00 0.00 0.00 4.30
1896 2150 7.021790 CCTGTATCTTTTTACTTTTCTTCCGC 58.978 38.462 0.00 0.00 0.00 5.54
1897 2151 7.094762 CCTGTATCTTTTTACTTTTCTTCCGCT 60.095 37.037 0.00 0.00 0.00 5.52
1898 2152 8.161699 TGTATCTTTTTACTTTTCTTCCGCTT 57.838 30.769 0.00 0.00 0.00 4.68
1899 2153 9.275398 TGTATCTTTTTACTTTTCTTCCGCTTA 57.725 29.630 0.00 0.00 0.00 3.09
1902 2156 8.217131 TCTTTTTACTTTTCTTCCGCTTAACT 57.783 30.769 0.00 0.00 0.00 2.24
1903 2157 9.328845 TCTTTTTACTTTTCTTCCGCTTAACTA 57.671 29.630 0.00 0.00 0.00 2.24
1916 2170 9.694137 CTTCCGCTTAACTATTATATATAGGGC 57.306 37.037 0.00 0.00 0.00 5.19
1937 2191 8.627208 AGGGCTATTTCAAGTATTATCATGTG 57.373 34.615 0.00 0.00 0.00 3.21
1938 2192 8.439971 AGGGCTATTTCAAGTATTATCATGTGA 58.560 33.333 0.00 0.00 0.00 3.58
1939 2193 8.725148 GGGCTATTTCAAGTATTATCATGTGAG 58.275 37.037 0.00 0.00 0.00 3.51
1940 2194 9.494271 GGCTATTTCAAGTATTATCATGTGAGA 57.506 33.333 0.00 0.00 0.00 3.27
1945 2199 9.942850 TTTCAAGTATTATCATGTGAGAGTTGA 57.057 29.630 0.00 0.29 0.00 3.18
1947 2201 9.755804 TCAAGTATTATCATGTGAGAGTTGATC 57.244 33.333 0.00 0.00 32.58 2.92
1948 2202 9.761504 CAAGTATTATCATGTGAGAGTTGATCT 57.238 33.333 0.00 0.00 42.61 2.75
1951 2205 8.986847 GTATTATCATGTGAGAGTTGATCTTGG 58.013 37.037 0.00 0.00 38.84 3.61
1952 2206 4.897509 TCATGTGAGAGTTGATCTTGGT 57.102 40.909 0.00 0.00 38.84 3.67
1953 2207 4.825422 TCATGTGAGAGTTGATCTTGGTC 58.175 43.478 0.00 0.00 38.84 4.02
1954 2208 4.529769 TCATGTGAGAGTTGATCTTGGTCT 59.470 41.667 0.00 0.00 38.84 3.85
1955 2209 4.963318 TGTGAGAGTTGATCTTGGTCTT 57.037 40.909 0.00 0.00 38.84 3.01
1956 2210 4.635223 TGTGAGAGTTGATCTTGGTCTTG 58.365 43.478 0.00 0.00 38.84 3.02
1957 2211 4.101585 TGTGAGAGTTGATCTTGGTCTTGT 59.898 41.667 0.00 0.00 38.84 3.16
1958 2212 4.688413 GTGAGAGTTGATCTTGGTCTTGTC 59.312 45.833 0.00 0.00 38.84 3.18
1959 2213 4.344968 TGAGAGTTGATCTTGGTCTTGTCA 59.655 41.667 0.00 0.00 38.84 3.58
1960 2214 4.636249 AGAGTTGATCTTGGTCTTGTCAC 58.364 43.478 0.00 0.00 32.99 3.67
1961 2215 4.346418 AGAGTTGATCTTGGTCTTGTCACT 59.654 41.667 0.00 0.00 32.99 3.41
1962 2216 5.540337 AGAGTTGATCTTGGTCTTGTCACTA 59.460 40.000 0.00 0.00 32.99 2.74
1965 2219 5.344743 TGATCTTGGTCTTGTCACTATCC 57.655 43.478 0.00 0.00 0.00 2.59
1966 2220 5.026121 TGATCTTGGTCTTGTCACTATCCT 58.974 41.667 0.00 0.00 0.00 3.24
1967 2221 5.485353 TGATCTTGGTCTTGTCACTATCCTT 59.515 40.000 0.00 0.00 0.00 3.36
1968 2222 5.407407 TCTTGGTCTTGTCACTATCCTTC 57.593 43.478 0.00 0.00 0.00 3.46
1969 2223 4.838423 TCTTGGTCTTGTCACTATCCTTCA 59.162 41.667 0.00 0.00 0.00 3.02
1972 2226 4.021104 TGGTCTTGTCACTATCCTTCACTG 60.021 45.833 0.00 0.00 0.00 3.66
1973 2227 4.499183 GTCTTGTCACTATCCTTCACTGG 58.501 47.826 0.00 0.00 0.00 4.00
1979 3508 4.157289 GTCACTATCCTTCACTGGAACGTA 59.843 45.833 0.00 0.00 39.85 3.57
1986 3515 4.098960 TCCTTCACTGGAACGTATACCATC 59.901 45.833 8.98 0.00 35.54 3.51
1987 3516 4.099573 CCTTCACTGGAACGTATACCATCT 59.900 45.833 8.98 0.00 35.54 2.90
1989 3518 5.762825 TCACTGGAACGTATACCATCTAC 57.237 43.478 8.98 0.00 35.54 2.59
1990 3519 4.581824 TCACTGGAACGTATACCATCTACC 59.418 45.833 8.98 0.00 35.54 3.18
1991 3520 3.567164 ACTGGAACGTATACCATCTACCG 59.433 47.826 8.98 1.21 35.54 4.02
1992 3521 3.554934 TGGAACGTATACCATCTACCGT 58.445 45.455 5.19 0.00 0.00 4.83
1993 3522 4.713553 TGGAACGTATACCATCTACCGTA 58.286 43.478 5.19 0.00 0.00 4.02
1996 3525 3.067106 ACGTATACCATCTACCGTACCG 58.933 50.000 0.00 0.00 0.00 4.02
1998 3527 3.935203 CGTATACCATCTACCGTACCGAT 59.065 47.826 0.00 0.00 0.00 4.18
2001 3530 6.258727 CGTATACCATCTACCGTACCGATTAT 59.741 42.308 0.00 0.00 0.00 1.28
2002 3531 7.438160 CGTATACCATCTACCGTACCGATTATA 59.562 40.741 0.00 0.00 0.00 0.98
2005 3534 5.105997 ACCATCTACCGTACCGATTATAAGC 60.106 44.000 0.00 0.00 0.00 3.09
2006 3535 5.125097 CCATCTACCGTACCGATTATAAGCT 59.875 44.000 0.00 0.00 0.00 3.74
2009 3538 9.049523 CATCTACCGTACCGATTATAAGCTATA 57.950 37.037 0.00 0.00 0.00 1.31
2011 3540 6.442513 ACCGTACCGATTATAAGCTATACC 57.557 41.667 0.00 0.00 0.00 2.73
2013 3542 6.434028 ACCGTACCGATTATAAGCTATACCAA 59.566 38.462 0.00 0.00 0.00 3.67
2014 3543 6.749118 CCGTACCGATTATAAGCTATACCAAC 59.251 42.308 0.00 0.00 0.00 3.77
2015 3544 7.362401 CCGTACCGATTATAAGCTATACCAACT 60.362 40.741 0.00 0.00 0.00 3.16
2016 3545 8.668353 CGTACCGATTATAAGCTATACCAACTA 58.332 37.037 0.00 0.00 0.00 2.24
2017 3546 9.780413 GTACCGATTATAAGCTATACCAACTAC 57.220 37.037 0.00 0.00 0.00 2.73
2018 3547 7.834803 ACCGATTATAAGCTATACCAACTACC 58.165 38.462 0.00 0.00 0.00 3.18
2019 3548 6.971184 CCGATTATAAGCTATACCAACTACCG 59.029 42.308 0.00 0.00 0.00 4.02
2021 3550 8.668353 CGATTATAAGCTATACCAACTACCGTA 58.332 37.037 0.00 0.00 0.00 4.02
2022 3551 9.780413 GATTATAAGCTATACCAACTACCGTAC 57.220 37.037 0.00 0.00 0.00 3.67
2024 3553 2.880890 AGCTATACCAACTACCGTACCG 59.119 50.000 0.00 0.00 0.00 4.02
2025 3554 2.878406 GCTATACCAACTACCGTACCGA 59.122 50.000 0.00 0.00 0.00 4.69
2026 3555 3.503748 GCTATACCAACTACCGTACCGAT 59.496 47.826 0.00 0.00 0.00 4.18
2027 3556 4.022849 GCTATACCAACTACCGTACCGATT 60.023 45.833 0.00 0.00 0.00 3.34
2030 3559 7.065803 GCTATACCAACTACCGTACCGATTATA 59.934 40.741 0.00 0.00 0.00 0.98
2031 3560 7.759489 ATACCAACTACCGTACCGATTATAA 57.241 36.000 0.00 0.00 0.00 0.98
2032 3561 6.076981 ACCAACTACCGTACCGATTATAAG 57.923 41.667 0.00 0.00 0.00 1.73
2033 3562 4.919754 CCAACTACCGTACCGATTATAAGC 59.080 45.833 0.00 0.00 0.00 3.09
2034 3563 5.278660 CCAACTACCGTACCGATTATAAGCT 60.279 44.000 0.00 0.00 0.00 3.74
2035 3564 6.072508 CCAACTACCGTACCGATTATAAGCTA 60.073 42.308 0.00 0.00 0.00 3.32
2037 3566 4.410492 ACCGTACCGATTATAAGCTACG 57.590 45.455 12.86 12.86 0.00 3.51
2040 3569 2.738013 ACCGATTATAAGCTACGGCC 57.262 50.000 17.02 0.00 46.18 6.13
2041 3570 1.965643 ACCGATTATAAGCTACGGCCA 59.034 47.619 2.24 0.00 46.18 5.36
2042 3571 2.565834 ACCGATTATAAGCTACGGCCAT 59.434 45.455 2.24 0.00 46.18 4.40
2043 3572 3.765511 ACCGATTATAAGCTACGGCCATA 59.234 43.478 2.24 0.00 46.18 2.74
2044 3573 4.110482 CCGATTATAAGCTACGGCCATAC 58.890 47.826 2.24 0.00 39.73 2.39
2046 3575 5.408356 CGATTATAAGCTACGGCCATACTT 58.592 41.667 2.24 2.85 39.73 2.24
2047 3576 5.515626 CGATTATAAGCTACGGCCATACTTC 59.484 44.000 2.24 0.00 39.73 3.01
2048 3577 5.794726 TTATAAGCTACGGCCATACTTCA 57.205 39.130 2.24 0.00 39.73 3.02
2050 3579 3.343941 AAGCTACGGCCATACTTCAAA 57.656 42.857 2.24 0.00 39.73 2.69
2051 3580 2.629051 AGCTACGGCCATACTTCAAAC 58.371 47.619 2.24 0.00 39.73 2.93
2053 3582 3.449737 AGCTACGGCCATACTTCAAACTA 59.550 43.478 2.24 0.00 39.73 2.24
2054 3583 4.081309 AGCTACGGCCATACTTCAAACTAA 60.081 41.667 2.24 0.00 39.73 2.24
2055 3584 4.632688 GCTACGGCCATACTTCAAACTAAA 59.367 41.667 2.24 0.00 0.00 1.85
2057 3586 6.348704 GCTACGGCCATACTTCAAACTAAAAA 60.349 38.462 2.24 0.00 0.00 1.94
2082 3655 2.606725 CTCATTCCTAACGCTCAGCAAG 59.393 50.000 0.00 0.00 0.00 4.01
2098 3671 2.036346 AGCAAGGCAACAATCCAAAGAC 59.964 45.455 0.00 0.00 41.41 3.01
2099 3672 2.664916 CAAGGCAACAATCCAAAGACG 58.335 47.619 0.00 0.00 41.41 4.18
2100 3673 0.598065 AGGCAACAATCCAAAGACGC 59.402 50.000 0.00 0.00 41.41 5.19
2101 3674 0.598065 GGCAACAATCCAAAGACGCT 59.402 50.000 0.00 0.00 0.00 5.07
2102 3675 1.401539 GGCAACAATCCAAAGACGCTC 60.402 52.381 0.00 0.00 0.00 5.03
2103 3676 1.266718 GCAACAATCCAAAGACGCTCA 59.733 47.619 0.00 0.00 0.00 4.26
2104 3677 2.666619 GCAACAATCCAAAGACGCTCAG 60.667 50.000 0.00 0.00 0.00 3.35
2105 3678 1.160137 ACAATCCAAAGACGCTCAGC 58.840 50.000 0.00 0.00 0.00 4.26
2106 3679 1.159285 CAATCCAAAGACGCTCAGCA 58.841 50.000 0.00 0.00 0.00 4.41
2107 3680 1.536766 CAATCCAAAGACGCTCAGCAA 59.463 47.619 0.00 0.00 0.00 3.91
2108 3681 1.896220 ATCCAAAGACGCTCAGCAAA 58.104 45.000 0.00 0.00 0.00 3.68
2109 3682 1.229428 TCCAAAGACGCTCAGCAAAG 58.771 50.000 0.00 0.00 0.00 2.77
2110 3683 0.386478 CCAAAGACGCTCAGCAAAGC 60.386 55.000 0.00 0.48 38.97 3.51
2111 3684 0.308684 CAAAGACGCTCAGCAAAGCA 59.691 50.000 10.48 0.00 42.62 3.91
2112 3685 1.024271 AAAGACGCTCAGCAAAGCAA 58.976 45.000 10.48 0.00 42.62 3.91
2113 3686 0.308993 AAGACGCTCAGCAAAGCAAC 59.691 50.000 10.48 4.08 42.62 4.17
2114 3687 0.815213 AGACGCTCAGCAAAGCAACA 60.815 50.000 10.48 0.00 42.62 3.33
2115 3688 0.385223 GACGCTCAGCAAAGCAACAG 60.385 55.000 10.48 0.00 42.62 3.16
2116 3689 1.097547 ACGCTCAGCAAAGCAACAGT 61.098 50.000 10.48 0.00 42.62 3.55
2117 3690 0.385223 CGCTCAGCAAAGCAACAGTC 60.385 55.000 10.48 0.00 42.62 3.51
2118 3691 0.039708 GCTCAGCAAAGCAACAGTCC 60.040 55.000 5.55 0.00 42.05 3.85
2119 3692 1.311859 CTCAGCAAAGCAACAGTCCA 58.688 50.000 0.00 0.00 0.00 4.02
2120 3693 1.677576 CTCAGCAAAGCAACAGTCCAA 59.322 47.619 0.00 0.00 0.00 3.53
2121 3694 2.098614 TCAGCAAAGCAACAGTCCAAA 58.901 42.857 0.00 0.00 0.00 3.28
2122 3695 2.099592 TCAGCAAAGCAACAGTCCAAAG 59.900 45.455 0.00 0.00 0.00 2.77
2123 3696 2.099592 CAGCAAAGCAACAGTCCAAAGA 59.900 45.455 0.00 0.00 0.00 2.52
2140 3713 6.149474 GTCCAAAGAACTAGAAGCAAGCATAA 59.851 38.462 0.00 0.00 0.00 1.90
2184 3757 7.826252 TGATTCAACCAAACAAAAATCCTTTCA 59.174 29.630 0.00 0.00 0.00 2.69
2190 3763 8.477419 ACCAAACAAAAATCCTTTCAGAGATA 57.523 30.769 0.00 0.00 0.00 1.98
2209 3782 8.572185 CAGAGATACAGCAATAGAGCTAAACTA 58.428 37.037 0.00 0.00 44.54 2.24
2210 3783 9.137459 AGAGATACAGCAATAGAGCTAAACTAA 57.863 33.333 0.00 0.00 44.54 2.24
2227 3800 9.229784 GCTAAACTAAAACAGAAACAGTAAACC 57.770 33.333 0.00 0.00 0.00 3.27
2231 3804 9.984190 AACTAAAACAGAAACAGTAAACCAAAA 57.016 25.926 0.00 0.00 0.00 2.44
2236 3809 8.642908 AACAGAAACAGTAAACCAAAATAAGC 57.357 30.769 0.00 0.00 0.00 3.09
2237 3810 7.777095 ACAGAAACAGTAAACCAAAATAAGCA 58.223 30.769 0.00 0.00 0.00 3.91
2238 3811 7.704899 ACAGAAACAGTAAACCAAAATAAGCAC 59.295 33.333 0.00 0.00 0.00 4.40
2239 3812 7.169140 CAGAAACAGTAAACCAAAATAAGCACC 59.831 37.037 0.00 0.00 0.00 5.01
2240 3813 6.472686 AACAGTAAACCAAAATAAGCACCA 57.527 33.333 0.00 0.00 0.00 4.17
2241 3814 6.084326 ACAGTAAACCAAAATAAGCACCAG 57.916 37.500 0.00 0.00 0.00 4.00
2242 3815 5.830991 ACAGTAAACCAAAATAAGCACCAGA 59.169 36.000 0.00 0.00 0.00 3.86
2243 3816 6.016276 ACAGTAAACCAAAATAAGCACCAGAG 60.016 38.462 0.00 0.00 0.00 3.35
2244 3817 4.871933 AAACCAAAATAAGCACCAGAGG 57.128 40.909 0.00 0.00 0.00 3.69
2245 3818 2.171003 ACCAAAATAAGCACCAGAGGC 58.829 47.619 0.00 0.00 0.00 4.70
2246 3819 2.225117 ACCAAAATAAGCACCAGAGGCT 60.225 45.455 0.00 0.00 45.15 4.58
2247 3820 3.010138 ACCAAAATAAGCACCAGAGGCTA 59.990 43.478 0.00 0.00 41.66 3.93
2248 3821 4.016444 CCAAAATAAGCACCAGAGGCTAA 58.984 43.478 0.00 0.00 41.66 3.09
2249 3822 4.142381 CCAAAATAAGCACCAGAGGCTAAC 60.142 45.833 0.00 0.00 41.66 2.34
2250 3823 4.576330 AAATAAGCACCAGAGGCTAACT 57.424 40.909 0.00 0.00 41.66 2.24
2251 3824 3.828875 ATAAGCACCAGAGGCTAACTC 57.171 47.619 0.00 0.00 46.98 3.01
2263 3836 5.396750 GAGGCTAACTCATGAAAATCGAC 57.603 43.478 0.00 0.00 45.85 4.20
2264 3837 4.832248 AGGCTAACTCATGAAAATCGACA 58.168 39.130 0.00 0.00 0.00 4.35
2265 3838 4.872691 AGGCTAACTCATGAAAATCGACAG 59.127 41.667 0.00 0.00 0.00 3.51
2266 3839 4.870426 GGCTAACTCATGAAAATCGACAGA 59.130 41.667 0.00 0.00 0.00 3.41
2267 3840 5.220491 GGCTAACTCATGAAAATCGACAGAC 60.220 44.000 0.00 0.00 0.00 3.51
2268 3841 5.348724 GCTAACTCATGAAAATCGACAGACA 59.651 40.000 0.00 0.00 0.00 3.41
2269 3842 6.128553 GCTAACTCATGAAAATCGACAGACAA 60.129 38.462 0.00 0.00 0.00 3.18
2270 3843 6.618287 AACTCATGAAAATCGACAGACAAA 57.382 33.333 0.00 0.00 0.00 2.83
2271 3844 6.808008 ACTCATGAAAATCGACAGACAAAT 57.192 33.333 0.00 0.00 0.00 2.32
2272 3845 7.905604 ACTCATGAAAATCGACAGACAAATA 57.094 32.000 0.00 0.00 0.00 1.40
2273 3846 8.498054 ACTCATGAAAATCGACAGACAAATAT 57.502 30.769 0.00 0.00 0.00 1.28
2274 3847 8.607459 ACTCATGAAAATCGACAGACAAATATC 58.393 33.333 0.00 0.00 0.00 1.63
2275 3848 7.919690 TCATGAAAATCGACAGACAAATATCC 58.080 34.615 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.919602 AGGACAAGAATAAGGCCAAGGA 59.080 45.455 5.01 0.00 0.00 3.36
89 107 5.590259 CCACATTACTTTTCCAATCGATCCT 59.410 40.000 0.00 0.00 0.00 3.24
90 108 5.733373 GCCACATTACTTTTCCAATCGATCC 60.733 44.000 0.00 0.00 0.00 3.36
101 119 2.497273 GGAGCCATGCCACATTACTTTT 59.503 45.455 0.00 0.00 0.00 2.27
128 147 1.878102 GCGGTGGAGATGTTTGTCAGT 60.878 52.381 0.00 0.00 0.00 3.41
164 183 0.322456 TCATTGGTTTGGAGCCGGAG 60.322 55.000 5.05 0.00 0.00 4.63
166 185 1.595093 GGTCATTGGTTTGGAGCCGG 61.595 60.000 0.00 0.00 0.00 6.13
252 271 4.492604 GCAAGGTGGCCAAGTACA 57.507 55.556 7.24 0.00 0.00 2.90
360 390 4.154918 GTGACAATGGATGAGTTGAAGACC 59.845 45.833 0.00 0.00 0.00 3.85
372 402 3.331889 AGGTGAAGAAGGTGACAATGGAT 59.668 43.478 0.00 0.00 0.00 3.41
382 412 4.265073 GCATGTATTGAGGTGAAGAAGGT 58.735 43.478 0.00 0.00 0.00 3.50
394 424 3.419943 TGCACAAGAAGGCATGTATTGA 58.580 40.909 0.00 0.00 34.58 2.57
445 475 4.866508 AGTTCGAGAACACCATGTAAGA 57.133 40.909 17.00 0.00 43.47 2.10
449 479 2.158813 ACCAAGTTCGAGAACACCATGT 60.159 45.455 17.00 5.18 43.47 3.21
509 541 1.467920 CTTCCCTTGGAGCATTGGAC 58.532 55.000 0.00 0.00 31.21 4.02
537 569 2.507886 TGAACTCCAACTCCAACTCCAA 59.492 45.455 0.00 0.00 0.00 3.53
539 571 2.930826 TGAACTCCAACTCCAACTCC 57.069 50.000 0.00 0.00 0.00 3.85
589 628 6.016693 CACTCAGTTAACACTCTCTCTTCTCA 60.017 42.308 8.61 0.00 0.00 3.27
602 641 3.275143 CCACAACCACACTCAGTTAACA 58.725 45.455 8.61 0.00 0.00 2.41
954 1185 1.004044 AGGATGACCTTGCAGAAGTGG 59.996 52.381 0.00 0.00 45.36 4.00
1079 1311 3.037851 TCATCAGCCTCATAGTGACCT 57.962 47.619 0.00 0.00 0.00 3.85
1117 1349 1.494721 GAAGATGGCCCAACCCTGATA 59.505 52.381 0.00 0.00 37.83 2.15
1133 1365 4.508128 GATGGACGGCGGCGAAGA 62.508 66.667 38.93 20.01 0.00 2.87
1159 1391 2.167693 TGAAGGTCATCATGTACCCGAC 59.832 50.000 9.91 3.60 36.34 4.79
1320 1563 7.516155 GCAAAGCAGTACGAATGAACGATATAA 60.516 37.037 0.00 0.00 37.03 0.98
1325 1568 2.156891 GCAAAGCAGTACGAATGAACGA 59.843 45.455 0.00 0.00 37.03 3.85
1326 1569 2.157668 AGCAAAGCAGTACGAATGAACG 59.842 45.455 0.00 0.00 39.31 3.95
1327 1570 3.813529 AGCAAAGCAGTACGAATGAAC 57.186 42.857 0.00 0.00 0.00 3.18
1328 1571 3.812609 TCAAGCAAAGCAGTACGAATGAA 59.187 39.130 0.00 0.00 0.00 2.57
1329 1572 3.398406 TCAAGCAAAGCAGTACGAATGA 58.602 40.909 0.00 0.00 0.00 2.57
1330 1573 3.811722 TCAAGCAAAGCAGTACGAATG 57.188 42.857 0.00 0.00 0.00 2.67
1331 1574 4.829064 TTTCAAGCAAAGCAGTACGAAT 57.171 36.364 0.00 0.00 0.00 3.34
1332 1575 4.347813 GTTTTCAAGCAAAGCAGTACGAA 58.652 39.130 0.00 0.00 0.00 3.85
1413 1658 8.718102 AGCAGTTTAATATACTACCACACTTG 57.282 34.615 0.00 0.00 0.00 3.16
1444 1690 6.272318 CCAAAGACACACAAAAGATAGCAAA 58.728 36.000 0.00 0.00 0.00 3.68
1493 1739 1.359848 GCGATGTGGTGAGGTTACTG 58.640 55.000 0.00 0.00 0.00 2.74
1508 1754 1.906574 TCTGGTAACCTCTTTGGCGAT 59.093 47.619 0.00 0.00 40.22 4.58
1541 1787 6.256975 CACAAGGCATGATATTTGGTTTCATG 59.743 38.462 0.00 7.57 46.06 3.07
1542 1788 6.070653 ACACAAGGCATGATATTTGGTTTCAT 60.071 34.615 0.00 0.00 0.00 2.57
1543 1789 5.245751 ACACAAGGCATGATATTTGGTTTCA 59.754 36.000 0.00 0.00 0.00 2.69
1544 1790 5.723295 ACACAAGGCATGATATTTGGTTTC 58.277 37.500 0.00 0.00 0.00 2.78
1545 1791 5.743636 ACACAAGGCATGATATTTGGTTT 57.256 34.783 0.00 0.00 0.00 3.27
1546 1792 5.743636 AACACAAGGCATGATATTTGGTT 57.256 34.783 0.00 0.00 0.00 3.67
1547 1793 5.743636 AAACACAAGGCATGATATTTGGT 57.256 34.783 0.00 0.00 0.00 3.67
1548 1794 5.289193 CGAAAACACAAGGCATGATATTTGG 59.711 40.000 0.00 0.00 0.00 3.28
1549 1795 5.863397 ACGAAAACACAAGGCATGATATTTG 59.137 36.000 0.00 0.00 0.00 2.32
1550 1796 6.024552 ACGAAAACACAAGGCATGATATTT 57.975 33.333 0.00 0.00 0.00 1.40
1551 1797 5.415701 AGACGAAAACACAAGGCATGATATT 59.584 36.000 0.00 0.00 0.00 1.28
1552 1798 4.943705 AGACGAAAACACAAGGCATGATAT 59.056 37.500 0.00 0.00 0.00 1.63
1553 1799 4.323417 AGACGAAAACACAAGGCATGATA 58.677 39.130 0.00 0.00 0.00 2.15
1554 1800 3.149196 AGACGAAAACACAAGGCATGAT 58.851 40.909 0.00 0.00 0.00 2.45
1555 1801 2.571212 AGACGAAAACACAAGGCATGA 58.429 42.857 0.00 0.00 0.00 3.07
1556 1802 4.481930 TTAGACGAAAACACAAGGCATG 57.518 40.909 0.00 0.00 0.00 4.06
1557 1803 4.336993 TGTTTAGACGAAAACACAAGGCAT 59.663 37.500 10.07 0.00 42.78 4.40
1558 1804 3.690139 TGTTTAGACGAAAACACAAGGCA 59.310 39.130 10.07 0.00 42.78 4.75
1559 1805 4.281525 TGTTTAGACGAAAACACAAGGC 57.718 40.909 10.07 0.00 42.78 4.35
1560 1806 5.632959 TGTTGTTTAGACGAAAACACAAGG 58.367 37.500 12.60 0.00 46.20 3.61
1561 1807 6.964370 TCATGTTGTTTAGACGAAAACACAAG 59.036 34.615 12.60 11.24 46.20 3.16
1562 1808 6.843208 TCATGTTGTTTAGACGAAAACACAA 58.157 32.000 12.60 3.45 46.20 3.33
1563 1809 6.424176 TCATGTTGTTTAGACGAAAACACA 57.576 33.333 12.60 13.27 46.20 3.72
1564 1810 7.253519 GGTTTCATGTTGTTTAGACGAAAACAC 60.254 37.037 12.60 9.73 46.20 3.32
1565 1811 6.748198 GGTTTCATGTTGTTTAGACGAAAACA 59.252 34.615 10.07 10.07 45.20 2.83
1566 1812 6.748198 TGGTTTCATGTTGTTTAGACGAAAAC 59.252 34.615 0.00 0.00 39.35 2.43
1567 1813 6.853720 TGGTTTCATGTTGTTTAGACGAAAA 58.146 32.000 0.00 0.00 0.00 2.29
1568 1814 6.438259 TGGTTTCATGTTGTTTAGACGAAA 57.562 33.333 0.00 0.00 0.00 3.46
1569 1815 6.438259 TTGGTTTCATGTTGTTTAGACGAA 57.562 33.333 0.00 0.00 0.00 3.85
1570 1816 6.127980 TGTTTGGTTTCATGTTGTTTAGACGA 60.128 34.615 0.00 0.00 0.00 4.20
1571 1817 6.020995 GTGTTTGGTTTCATGTTGTTTAGACG 60.021 38.462 0.00 0.00 0.00 4.18
1572 1818 6.254804 GGTGTTTGGTTTCATGTTGTTTAGAC 59.745 38.462 0.00 0.00 0.00 2.59
1573 1819 6.071334 TGGTGTTTGGTTTCATGTTGTTTAGA 60.071 34.615 0.00 0.00 0.00 2.10
1574 1820 6.102663 TGGTGTTTGGTTTCATGTTGTTTAG 58.897 36.000 0.00 0.00 0.00 1.85
1575 1821 6.037786 TGGTGTTTGGTTTCATGTTGTTTA 57.962 33.333 0.00 0.00 0.00 2.01
1576 1822 4.899502 TGGTGTTTGGTTTCATGTTGTTT 58.100 34.783 0.00 0.00 0.00 2.83
1577 1823 4.543590 TGGTGTTTGGTTTCATGTTGTT 57.456 36.364 0.00 0.00 0.00 2.83
1578 1824 4.440880 CATGGTGTTTGGTTTCATGTTGT 58.559 39.130 0.00 0.00 32.86 3.32
1579 1825 3.248125 GCATGGTGTTTGGTTTCATGTTG 59.752 43.478 0.00 0.00 37.92 3.33
1580 1826 3.465871 GCATGGTGTTTGGTTTCATGTT 58.534 40.909 0.00 0.00 37.92 2.71
1581 1827 2.224257 GGCATGGTGTTTGGTTTCATGT 60.224 45.455 0.00 0.00 37.92 3.21
1636 1886 2.359848 GGGCGTAACAAAAAGTGACCTT 59.640 45.455 0.00 0.00 0.00 3.50
1638 1888 1.001048 GGGGCGTAACAAAAAGTGACC 60.001 52.381 0.00 0.00 0.00 4.02
1644 1894 2.820787 CCTGTATGGGGCGTAACAAAAA 59.179 45.455 0.00 0.00 0.00 1.94
1659 1909 2.126882 TGCATACCCTCAAGCCTGTAT 58.873 47.619 0.00 0.00 0.00 2.29
1660 1910 1.578897 TGCATACCCTCAAGCCTGTA 58.421 50.000 0.00 0.00 0.00 2.74
1662 1912 1.474077 GTTTGCATACCCTCAAGCCTG 59.526 52.381 0.00 0.00 0.00 4.85
1664 1914 1.544724 TGTTTGCATACCCTCAAGCC 58.455 50.000 4.77 0.00 0.00 4.35
1665 1915 2.352715 GGTTGTTTGCATACCCTCAAGC 60.353 50.000 4.77 0.00 0.00 4.01
1666 1916 2.890311 TGGTTGTTTGCATACCCTCAAG 59.110 45.455 4.77 0.00 0.00 3.02
1667 1917 2.950781 TGGTTGTTTGCATACCCTCAA 58.049 42.857 4.77 0.00 0.00 3.02
1668 1918 2.666272 TGGTTGTTTGCATACCCTCA 57.334 45.000 4.77 0.00 0.00 3.86
1669 1919 4.535526 ATTTGGTTGTTTGCATACCCTC 57.464 40.909 4.77 0.00 0.00 4.30
1670 1920 6.619329 ATTATTTGGTTGTTTGCATACCCT 57.381 33.333 4.77 0.00 0.00 4.34
1671 1921 7.324178 TGTATTATTTGGTTGTTTGCATACCC 58.676 34.615 4.77 0.62 0.00 3.69
1672 1922 7.491048 CCTGTATTATTTGGTTGTTTGCATACC 59.509 37.037 4.77 3.20 0.00 2.73
1673 1923 7.010091 GCCTGTATTATTTGGTTGTTTGCATAC 59.990 37.037 0.00 0.00 0.00 2.39
1674 1924 7.038659 GCCTGTATTATTTGGTTGTTTGCATA 58.961 34.615 0.00 0.00 0.00 3.14
1675 1925 5.874261 GCCTGTATTATTTGGTTGTTTGCAT 59.126 36.000 0.00 0.00 0.00 3.96
1676 1926 5.011533 AGCCTGTATTATTTGGTTGTTTGCA 59.988 36.000 0.00 0.00 0.00 4.08
1677 1927 5.478407 AGCCTGTATTATTTGGTTGTTTGC 58.522 37.500 0.00 0.00 0.00 3.68
1678 1928 5.799936 CGAGCCTGTATTATTTGGTTGTTTG 59.200 40.000 0.00 0.00 0.00 2.93
1679 1929 5.708230 TCGAGCCTGTATTATTTGGTTGTTT 59.292 36.000 0.00 0.00 0.00 2.83
1680 1930 5.250200 TCGAGCCTGTATTATTTGGTTGTT 58.750 37.500 0.00 0.00 0.00 2.83
1681 1931 4.839121 TCGAGCCTGTATTATTTGGTTGT 58.161 39.130 0.00 0.00 0.00 3.32
1682 1932 4.273480 CCTCGAGCCTGTATTATTTGGTTG 59.727 45.833 6.99 0.00 0.00 3.77
1683 1933 4.451900 CCTCGAGCCTGTATTATTTGGTT 58.548 43.478 6.99 0.00 0.00 3.67
1684 1934 3.181454 CCCTCGAGCCTGTATTATTTGGT 60.181 47.826 6.99 0.00 0.00 3.67
1685 1935 3.181454 ACCCTCGAGCCTGTATTATTTGG 60.181 47.826 6.99 0.12 0.00 3.28
1686 1936 4.073293 ACCCTCGAGCCTGTATTATTTG 57.927 45.455 6.99 0.00 0.00 2.32
1687 1937 5.794894 CATACCCTCGAGCCTGTATTATTT 58.205 41.667 6.99 0.00 0.00 1.40
1688 1938 4.322801 GCATACCCTCGAGCCTGTATTATT 60.323 45.833 6.99 0.00 0.00 1.40
1689 1939 3.195825 GCATACCCTCGAGCCTGTATTAT 59.804 47.826 6.99 0.00 0.00 1.28
1690 1940 2.561419 GCATACCCTCGAGCCTGTATTA 59.439 50.000 6.99 0.00 0.00 0.98
1691 1941 1.344763 GCATACCCTCGAGCCTGTATT 59.655 52.381 6.99 0.00 0.00 1.89
1694 1944 1.680522 CTGCATACCCTCGAGCCTGT 61.681 60.000 6.99 6.32 0.00 4.00
1701 1951 0.249120 TGGTTGTCTGCATACCCTCG 59.751 55.000 0.00 0.00 0.00 4.63
1723 1973 2.315781 CTGCATAGGGCTTCCGCTGA 62.316 60.000 0.00 0.00 45.15 4.26
1724 1974 1.890979 CTGCATAGGGCTTCCGCTG 60.891 63.158 0.00 0.00 45.15 5.18
1726 1976 2.592861 CCTGCATAGGGCTTCCGC 60.593 66.667 0.00 0.00 45.15 5.54
1727 1977 2.592861 GCCTGCATAGGGCTTCCG 60.593 66.667 8.16 0.00 44.75 4.30
1733 1983 2.660189 CAACTTTTGCCTGCATAGGG 57.340 50.000 0.00 0.00 44.75 3.53
1746 1996 2.874849 CGTGTTTGGTTCAGCAACTTT 58.125 42.857 0.00 0.00 32.50 2.66
1755 2005 2.295070 ACTTTATGGGCGTGTTTGGTTC 59.705 45.455 0.00 0.00 0.00 3.62
1766 2020 3.006537 TGCCGAGTAGATACTTTATGGGC 59.993 47.826 0.00 4.16 36.50 5.36
1771 2025 6.239232 GGGAAAGATGCCGAGTAGATACTTTA 60.239 42.308 0.00 0.00 36.50 1.85
1774 2028 3.574826 GGGAAAGATGCCGAGTAGATACT 59.425 47.826 0.00 0.00 39.71 2.12
1778 2032 2.160721 AGGGAAAGATGCCGAGTAGA 57.839 50.000 0.00 0.00 42.97 2.59
1793 2047 2.158755 GCCTAGCTATTGCAAGAAGGGA 60.159 50.000 11.30 0.00 42.74 4.20
1823 2077 6.572182 TCTAGCAAGTACTCTAGGGTTCTA 57.428 41.667 15.20 0.00 34.52 2.10
1824 2078 5.453866 TCTAGCAAGTACTCTAGGGTTCT 57.546 43.478 15.20 0.00 34.52 3.01
1842 2096 3.134804 ACCAGGGATCGACCAATTTCTAG 59.865 47.826 6.41 0.00 41.20 2.43
1876 2130 8.847196 AGTTAAGCGGAAGAAAAGTAAAAAGAT 58.153 29.630 0.00 0.00 0.00 2.40
1877 2131 8.217131 AGTTAAGCGGAAGAAAAGTAAAAAGA 57.783 30.769 0.00 0.00 0.00 2.52
1890 2144 9.694137 GCCCTATATATAATAGTTAAGCGGAAG 57.306 37.037 0.00 0.00 0.00 3.46
1911 2165 9.725019 CACATGATAATACTTGAAATAGCCCTA 57.275 33.333 0.00 0.00 0.00 3.53
1912 2166 8.439971 TCACATGATAATACTTGAAATAGCCCT 58.560 33.333 0.00 0.00 0.00 5.19
1914 2168 9.494271 TCTCACATGATAATACTTGAAATAGCC 57.506 33.333 0.00 0.00 0.00 3.93
1919 2173 9.942850 TCAACTCTCACATGATAATACTTGAAA 57.057 29.630 0.00 0.00 0.00 2.69
1922 2176 9.761504 AGATCAACTCTCACATGATAATACTTG 57.238 33.333 0.00 0.00 34.10 3.16
1924 2178 9.761504 CAAGATCAACTCTCACATGATAATACT 57.238 33.333 0.00 0.00 34.10 2.12
1925 2179 8.986847 CCAAGATCAACTCTCACATGATAATAC 58.013 37.037 0.00 0.00 34.10 1.89
1927 2181 7.571919 ACCAAGATCAACTCTCACATGATAAT 58.428 34.615 0.00 0.00 34.10 1.28
1928 2182 6.950842 ACCAAGATCAACTCTCACATGATAA 58.049 36.000 0.00 0.00 34.10 1.75
1929 2183 6.382282 AGACCAAGATCAACTCTCACATGATA 59.618 38.462 0.00 0.00 34.10 2.15
1930 2184 5.189342 AGACCAAGATCAACTCTCACATGAT 59.811 40.000 0.00 0.00 36.54 2.45
1931 2185 4.529769 AGACCAAGATCAACTCTCACATGA 59.470 41.667 0.00 0.00 31.03 3.07
1932 2186 4.829968 AGACCAAGATCAACTCTCACATG 58.170 43.478 0.00 0.00 31.03 3.21
1934 2188 4.101585 ACAAGACCAAGATCAACTCTCACA 59.898 41.667 0.00 0.00 31.03 3.58
1935 2189 4.636249 ACAAGACCAAGATCAACTCTCAC 58.364 43.478 0.00 0.00 31.03 3.51
1937 2191 4.688413 GTGACAAGACCAAGATCAACTCTC 59.312 45.833 0.00 0.00 31.03 3.20
1938 2192 4.346418 AGTGACAAGACCAAGATCAACTCT 59.654 41.667 0.00 0.00 34.96 3.24
1939 2193 4.636249 AGTGACAAGACCAAGATCAACTC 58.364 43.478 0.00 0.00 0.00 3.01
1940 2194 4.696479 AGTGACAAGACCAAGATCAACT 57.304 40.909 0.00 0.00 0.00 3.16
1941 2195 5.582665 GGATAGTGACAAGACCAAGATCAAC 59.417 44.000 0.00 0.00 0.00 3.18
1942 2196 5.485353 AGGATAGTGACAAGACCAAGATCAA 59.515 40.000 0.00 0.00 0.00 2.57
1943 2197 5.026121 AGGATAGTGACAAGACCAAGATCA 58.974 41.667 0.00 0.00 0.00 2.92
1945 2199 5.485353 TGAAGGATAGTGACAAGACCAAGAT 59.515 40.000 0.00 0.00 0.00 2.40
1947 2201 4.932200 GTGAAGGATAGTGACAAGACCAAG 59.068 45.833 0.00 0.00 0.00 3.61
1948 2202 4.593206 AGTGAAGGATAGTGACAAGACCAA 59.407 41.667 0.00 0.00 0.00 3.67
1951 2205 4.220821 TCCAGTGAAGGATAGTGACAAGAC 59.779 45.833 0.00 0.00 31.23 3.01
1952 2206 4.416516 TCCAGTGAAGGATAGTGACAAGA 58.583 43.478 0.00 0.00 31.23 3.02
1953 2207 4.808414 TCCAGTGAAGGATAGTGACAAG 57.192 45.455 0.00 0.00 31.23 3.16
1954 2208 4.560716 CGTTCCAGTGAAGGATAGTGACAA 60.561 45.833 0.00 0.00 38.37 3.18
1955 2209 3.056821 CGTTCCAGTGAAGGATAGTGACA 60.057 47.826 0.00 0.00 38.37 3.58
1956 2210 3.056749 ACGTTCCAGTGAAGGATAGTGAC 60.057 47.826 0.00 0.00 38.37 3.67
1957 2211 3.162666 ACGTTCCAGTGAAGGATAGTGA 58.837 45.455 0.00 0.00 38.37 3.41
1958 2212 3.594603 ACGTTCCAGTGAAGGATAGTG 57.405 47.619 0.00 0.00 38.37 2.74
1959 2213 5.301298 GGTATACGTTCCAGTGAAGGATAGT 59.699 44.000 0.00 0.00 38.37 2.12
1960 2214 5.301045 TGGTATACGTTCCAGTGAAGGATAG 59.699 44.000 0.00 0.00 38.37 2.08
1961 2215 5.202765 TGGTATACGTTCCAGTGAAGGATA 58.797 41.667 0.00 0.00 38.37 2.59
1962 2216 4.028131 TGGTATACGTTCCAGTGAAGGAT 58.972 43.478 0.00 0.00 38.37 3.24
1965 2219 5.263968 AGATGGTATACGTTCCAGTGAAG 57.736 43.478 0.00 0.00 37.14 3.02
1966 2220 5.068198 GGTAGATGGTATACGTTCCAGTGAA 59.932 44.000 0.00 0.00 37.14 3.18
1967 2221 4.581824 GGTAGATGGTATACGTTCCAGTGA 59.418 45.833 0.00 0.00 37.14 3.41
1968 2222 4.556104 CGGTAGATGGTATACGTTCCAGTG 60.556 50.000 0.00 0.00 37.14 3.66
1969 2223 3.567164 CGGTAGATGGTATACGTTCCAGT 59.433 47.826 0.00 0.00 37.14 4.00
1972 2226 4.083271 GGTACGGTAGATGGTATACGTTCC 60.083 50.000 0.00 0.00 0.00 3.62
1973 2227 5.035784 GGTACGGTAGATGGTATACGTTC 57.964 47.826 0.00 0.00 0.00 3.95
1991 3520 9.780413 GTAGTTGGTATAGCTTATAATCGGTAC 57.220 37.037 3.20 0.00 0.00 3.34
1992 3521 8.960591 GGTAGTTGGTATAGCTTATAATCGGTA 58.039 37.037 3.20 0.00 0.00 4.02
1993 3522 7.362401 CGGTAGTTGGTATAGCTTATAATCGGT 60.362 40.741 3.20 0.00 0.00 4.69
1996 3525 9.780413 GTACGGTAGTTGGTATAGCTTATAATC 57.220 37.037 3.20 0.00 0.00 1.75
1998 3527 8.110860 GGTACGGTAGTTGGTATAGCTTATAA 57.889 38.462 3.20 0.00 0.00 0.98
2002 3531 4.926140 GGTACGGTAGTTGGTATAGCTT 57.074 45.455 3.20 0.00 0.00 3.74
2019 3548 3.057315 TGGCCGTAGCTTATAATCGGTAC 60.057 47.826 0.00 10.30 42.62 3.34
2021 3550 1.965643 TGGCCGTAGCTTATAATCGGT 59.034 47.619 0.00 2.42 42.62 4.69
2022 3551 2.736144 TGGCCGTAGCTTATAATCGG 57.264 50.000 0.00 11.49 43.37 4.18
2024 3553 6.395629 TGAAGTATGGCCGTAGCTTATAATC 58.604 40.000 4.44 1.54 39.73 1.75
2025 3554 6.354794 TGAAGTATGGCCGTAGCTTATAAT 57.645 37.500 4.44 0.00 39.73 1.28
2026 3555 5.794726 TGAAGTATGGCCGTAGCTTATAA 57.205 39.130 4.44 0.20 39.73 0.98
2027 3556 5.794726 TTGAAGTATGGCCGTAGCTTATA 57.205 39.130 4.44 3.08 39.73 0.98
2030 3559 3.007635 GTTTGAAGTATGGCCGTAGCTT 58.992 45.455 4.44 11.63 39.73 3.74
2031 3560 2.236395 AGTTTGAAGTATGGCCGTAGCT 59.764 45.455 4.44 3.14 39.73 3.32
2032 3561 2.629051 AGTTTGAAGTATGGCCGTAGC 58.371 47.619 4.44 0.65 38.76 3.58
2033 3562 6.730960 TTTTAGTTTGAAGTATGGCCGTAG 57.269 37.500 4.44 0.00 0.00 3.51
2034 3563 6.485984 TGTTTTTAGTTTGAAGTATGGCCGTA 59.514 34.615 0.00 0.00 0.00 4.02
2035 3564 5.299782 TGTTTTTAGTTTGAAGTATGGCCGT 59.700 36.000 1.35 1.35 0.00 5.68
2037 3566 7.602753 AGATGTTTTTAGTTTGAAGTATGGCC 58.397 34.615 0.00 0.00 0.00 5.36
2038 3567 8.296713 TGAGATGTTTTTAGTTTGAAGTATGGC 58.703 33.333 0.00 0.00 0.00 4.40
2043 3572 9.136323 AGGAATGAGATGTTTTTAGTTTGAAGT 57.864 29.630 0.00 0.00 0.00 3.01
2047 3576 9.329913 CGTTAGGAATGAGATGTTTTTAGTTTG 57.670 33.333 0.00 0.00 0.00 2.93
2048 3577 8.021396 GCGTTAGGAATGAGATGTTTTTAGTTT 58.979 33.333 0.00 0.00 0.00 2.66
2050 3579 6.879458 AGCGTTAGGAATGAGATGTTTTTAGT 59.121 34.615 0.00 0.00 0.00 2.24
2051 3580 7.064609 TGAGCGTTAGGAATGAGATGTTTTTAG 59.935 37.037 0.00 0.00 0.00 1.85
2053 3582 5.705441 TGAGCGTTAGGAATGAGATGTTTTT 59.295 36.000 0.00 0.00 0.00 1.94
2054 3583 5.245531 TGAGCGTTAGGAATGAGATGTTTT 58.754 37.500 0.00 0.00 0.00 2.43
2055 3584 4.832248 TGAGCGTTAGGAATGAGATGTTT 58.168 39.130 0.00 0.00 0.00 2.83
2057 3586 3.739519 GCTGAGCGTTAGGAATGAGATGT 60.740 47.826 0.00 0.00 0.00 3.06
2070 3643 1.383456 TTGTTGCCTTGCTGAGCGTT 61.383 50.000 0.00 0.00 0.00 4.84
2082 3655 0.598065 AGCGTCTTTGGATTGTTGCC 59.402 50.000 0.00 0.00 0.00 4.52
2098 3671 0.385223 GACTGTTGCTTTGCTGAGCG 60.385 55.000 0.00 0.00 45.64 5.03
2099 3672 0.039708 GGACTGTTGCTTTGCTGAGC 60.040 55.000 0.00 0.00 43.00 4.26
2100 3673 1.311859 TGGACTGTTGCTTTGCTGAG 58.688 50.000 0.00 0.00 0.00 3.35
2101 3674 1.761449 TTGGACTGTTGCTTTGCTGA 58.239 45.000 0.00 0.00 0.00 4.26
2102 3675 2.099592 TCTTTGGACTGTTGCTTTGCTG 59.900 45.455 0.00 0.00 0.00 4.41
2103 3676 2.378038 TCTTTGGACTGTTGCTTTGCT 58.622 42.857 0.00 0.00 0.00 3.91
2104 3677 2.860136 GTTCTTTGGACTGTTGCTTTGC 59.140 45.455 0.00 0.00 0.00 3.68
2105 3678 4.376340 AGTTCTTTGGACTGTTGCTTTG 57.624 40.909 0.00 0.00 0.00 2.77
2106 3679 5.437060 TCTAGTTCTTTGGACTGTTGCTTT 58.563 37.500 0.00 0.00 0.00 3.51
2107 3680 5.036117 TCTAGTTCTTTGGACTGTTGCTT 57.964 39.130 0.00 0.00 0.00 3.91
2108 3681 4.689612 TCTAGTTCTTTGGACTGTTGCT 57.310 40.909 0.00 0.00 0.00 3.91
2109 3682 4.319839 GCTTCTAGTTCTTTGGACTGTTGC 60.320 45.833 0.00 0.00 0.00 4.17
2110 3683 4.816385 TGCTTCTAGTTCTTTGGACTGTTG 59.184 41.667 0.00 0.00 0.00 3.33
2111 3684 5.036117 TGCTTCTAGTTCTTTGGACTGTT 57.964 39.130 0.00 0.00 0.00 3.16
2112 3685 4.689612 TGCTTCTAGTTCTTTGGACTGT 57.310 40.909 0.00 0.00 0.00 3.55
2113 3686 4.083590 GCTTGCTTCTAGTTCTTTGGACTG 60.084 45.833 0.00 0.00 0.00 3.51
2114 3687 4.068599 GCTTGCTTCTAGTTCTTTGGACT 58.931 43.478 0.00 0.00 0.00 3.85
2115 3688 3.815401 TGCTTGCTTCTAGTTCTTTGGAC 59.185 43.478 0.00 0.00 0.00 4.02
2116 3689 4.085357 TGCTTGCTTCTAGTTCTTTGGA 57.915 40.909 0.00 0.00 0.00 3.53
2117 3690 6.072508 TGTTATGCTTGCTTCTAGTTCTTTGG 60.073 38.462 0.00 0.00 0.00 3.28
2118 3691 6.798959 GTGTTATGCTTGCTTCTAGTTCTTTG 59.201 38.462 0.00 0.00 0.00 2.77
2119 3692 6.072452 GGTGTTATGCTTGCTTCTAGTTCTTT 60.072 38.462 0.00 0.00 0.00 2.52
2120 3693 5.412904 GGTGTTATGCTTGCTTCTAGTTCTT 59.587 40.000 0.00 0.00 0.00 2.52
2121 3694 4.938226 GGTGTTATGCTTGCTTCTAGTTCT 59.062 41.667 0.00 0.00 0.00 3.01
2122 3695 4.095036 GGGTGTTATGCTTGCTTCTAGTTC 59.905 45.833 0.00 0.00 0.00 3.01
2123 3696 4.010349 GGGTGTTATGCTTGCTTCTAGTT 58.990 43.478 0.00 0.00 0.00 2.24
2140 3713 3.237268 TCAAACATAAAGCAGGGGTGT 57.763 42.857 0.00 0.00 0.00 4.16
2180 3753 6.477053 AGCTCTATTGCTGTATCTCTGAAA 57.523 37.500 0.00 0.00 42.33 2.69
2184 3757 7.595819 AGTTTAGCTCTATTGCTGTATCTCT 57.404 36.000 0.00 0.00 43.87 3.10
2190 3763 7.878127 TCTGTTTTAGTTTAGCTCTATTGCTGT 59.122 33.333 0.00 0.00 43.87 4.40
2210 3783 9.093970 GCTTATTTTGGTTTACTGTTTCTGTTT 57.906 29.630 0.00 0.00 0.00 2.83
2227 3800 4.702131 AGTTAGCCTCTGGTGCTTATTTTG 59.298 41.667 0.00 0.00 40.23 2.44
2228 3801 4.923415 AGTTAGCCTCTGGTGCTTATTTT 58.077 39.130 0.00 0.00 40.23 1.82
2231 3804 3.107601 TGAGTTAGCCTCTGGTGCTTAT 58.892 45.455 0.00 0.00 41.11 1.73
2232 3805 2.536066 TGAGTTAGCCTCTGGTGCTTA 58.464 47.619 0.00 0.00 41.11 3.09
2233 3806 1.352083 TGAGTTAGCCTCTGGTGCTT 58.648 50.000 0.00 0.00 41.11 3.91
2234 3807 1.209019 CATGAGTTAGCCTCTGGTGCT 59.791 52.381 0.00 0.00 41.11 4.40
2235 3808 1.208052 TCATGAGTTAGCCTCTGGTGC 59.792 52.381 0.00 0.00 41.11 5.01
2236 3809 3.616956 TTCATGAGTTAGCCTCTGGTG 57.383 47.619 0.00 0.00 41.11 4.17
2237 3810 4.640771 TTTTCATGAGTTAGCCTCTGGT 57.359 40.909 0.00 0.00 41.11 4.00
2238 3811 4.272018 CGATTTTCATGAGTTAGCCTCTGG 59.728 45.833 0.00 0.00 41.11 3.86
2239 3812 5.006165 GTCGATTTTCATGAGTTAGCCTCTG 59.994 44.000 0.00 0.00 41.11 3.35
2240 3813 5.112686 GTCGATTTTCATGAGTTAGCCTCT 58.887 41.667 0.00 0.00 41.11 3.69
2241 3814 4.870426 TGTCGATTTTCATGAGTTAGCCTC 59.130 41.667 0.00 0.00 40.89 4.70
2242 3815 4.832248 TGTCGATTTTCATGAGTTAGCCT 58.168 39.130 0.00 0.00 0.00 4.58
2243 3816 4.870426 TCTGTCGATTTTCATGAGTTAGCC 59.130 41.667 0.00 0.00 0.00 3.93
2244 3817 5.348724 TGTCTGTCGATTTTCATGAGTTAGC 59.651 40.000 0.00 0.00 0.00 3.09
2245 3818 6.951256 TGTCTGTCGATTTTCATGAGTTAG 57.049 37.500 0.00 0.00 0.00 2.34
2246 3819 7.722795 TTTGTCTGTCGATTTTCATGAGTTA 57.277 32.000 0.00 0.00 0.00 2.24
2247 3820 6.618287 TTTGTCTGTCGATTTTCATGAGTT 57.382 33.333 0.00 0.00 0.00 3.01
2248 3821 6.808008 ATTTGTCTGTCGATTTTCATGAGT 57.192 33.333 0.00 0.00 0.00 3.41
2249 3822 8.066595 GGATATTTGTCTGTCGATTTTCATGAG 58.933 37.037 0.00 0.00 0.00 2.90
2250 3823 7.919690 GGATATTTGTCTGTCGATTTTCATGA 58.080 34.615 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.