Multiple sequence alignment - TraesCS4A01G187800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G187800 chr4A 100.000 4091 0 0 1 4091 466921580 466925670 0.000000e+00 7555.0
1 TraesCS4A01G187800 chr4D 89.880 3261 183 60 883 4091 109915476 109912311 0.000000e+00 4058.0
2 TraesCS4A01G187800 chr4D 80.510 431 79 4 44 472 297233310 297232883 3.940000e-85 326.0
3 TraesCS4A01G187800 chr4D 78.947 342 62 8 121 458 44055429 44055764 1.480000e-54 224.0
4 TraesCS4A01G187800 chr4D 78.070 342 66 7 121 458 44015159 44015495 1.490000e-49 207.0
5 TraesCS4A01G187800 chr4D 86.154 130 17 1 2448 2576 478275479 478275608 5.510000e-29 139.0
6 TraesCS4A01G187800 chr4D 97.674 43 1 0 823 865 109916410 109916368 1.580000e-09 75.0
7 TraesCS4A01G187800 chr4D 94.737 38 2 0 2401 2438 504318363 504318326 4.420000e-05 60.2
8 TraesCS4A01G187800 chr4D 100.000 28 0 0 864 891 109916350 109916323 7.000000e-03 52.8
9 TraesCS4A01G187800 chr4B 86.677 1854 154 49 1952 3771 171091564 171089770 0.000000e+00 1969.0
10 TraesCS4A01G187800 chr4B 87.224 1315 76 43 588 1878 171092876 171091630 0.000000e+00 1413.0
11 TraesCS4A01G187800 chr4B 85.024 207 20 9 3817 4019 171089699 171089500 2.490000e-47 200.0
12 TraesCS4A01G187800 chr1D 88.889 396 38 4 32 424 383257199 383256807 2.210000e-132 483.0
13 TraesCS4A01G187800 chr7B 81.156 398 63 9 211 601 176030158 176030550 3.970000e-80 309.0
14 TraesCS4A01G187800 chr3D 79.294 425 79 8 1 421 174585219 174584800 5.170000e-74 289.0
15 TraesCS4A01G187800 chr7D 75.773 582 113 24 23 587 424132012 424131442 6.740000e-68 268.0
16 TraesCS4A01G187800 chr5D 78.341 434 79 11 1 425 247788841 247788414 2.420000e-67 267.0
17 TraesCS4A01G187800 chr2B 80.205 293 41 14 131 416 424335380 424335098 1.930000e-48 204.0
18 TraesCS4A01G187800 chr6D 84.962 133 14 4 2446 2576 249454364 249454236 3.320000e-26 130.0
19 TraesCS4A01G187800 chr6A 84.962 133 14 4 2446 2576 349512769 349512897 3.320000e-26 130.0
20 TraesCS4A01G187800 chr6B 84.211 133 15 4 2446 2576 337236955 337236827 1.540000e-24 124.0
21 TraesCS4A01G187800 chr2D 83.206 131 19 3 2446 2573 45475725 45475855 2.580000e-22 117.0
22 TraesCS4A01G187800 chr5A 77.295 207 35 7 2381 2576 324391581 324391376 1.200000e-20 111.0
23 TraesCS4A01G187800 chr3A 80.769 130 22 3 2446 2573 90297714 90297842 9.360000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G187800 chr4A 466921580 466925670 4090 False 7555.000000 7555 100.000000 1 4091 1 chr4A.!!$F1 4090
1 TraesCS4A01G187800 chr4D 109912311 109916410 4099 True 1395.266667 4058 95.851333 823 4091 3 chr4D.!!$R3 3268
2 TraesCS4A01G187800 chr4B 171089500 171092876 3376 True 1194.000000 1969 86.308333 588 4019 3 chr4B.!!$R1 3431
3 TraesCS4A01G187800 chr7D 424131442 424132012 570 True 268.000000 268 75.773000 23 587 1 chr7D.!!$R1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
734 742 0.037882 CGCAGGTGCAGAGAGAAAGA 60.038 55.0 2.33 0.0 42.21 2.52 F
774 782 0.250295 TGTTCTTGGTCGCCTCCTTG 60.250 55.0 0.00 0.0 0.00 3.61 F
1931 2888 0.179056 AGTTGTGGTTGAGTGTCGGG 60.179 55.0 0.00 0.0 0.00 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1689 2609 0.386476 CAACAAGGCAAAGCAGCTCA 59.614 50.000 0.00 0.0 34.17 4.26 R
2110 3068 1.407258 GGGTTGTTAAACACTGCAGCA 59.593 47.619 15.27 0.0 36.71 4.41 R
3525 4509 1.067000 CCTGGCCAAAATTTCGCATGA 60.067 47.619 7.01 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.797039 TCATATCTTCTTTGGCTGTCCG 58.203 45.455 0.00 0.00 34.14 4.79
30 31 2.909965 GGCTGTCCGTTGGCCAAA 60.910 61.111 22.47 0.82 44.69 3.28
31 32 2.335011 GCTGTCCGTTGGCCAAAC 59.665 61.111 22.47 15.96 35.25 2.93
35 36 1.826487 GTCCGTTGGCCAAACTGGT 60.826 57.895 22.47 0.00 40.46 4.00
37 38 2.561037 CCGTTGGCCAAACTGGTCC 61.561 63.158 22.47 4.67 42.76 4.46
39 40 1.527380 GTTGGCCAAACTGGTCCGA 60.527 57.895 22.47 0.00 42.76 4.55
42 43 2.430367 GCCAAACTGGTCCGAGGT 59.570 61.111 0.00 0.00 40.46 3.85
49 50 0.544697 ACTGGTCCGAGGTTGTGTTT 59.455 50.000 0.00 0.00 0.00 2.83
51 52 0.253610 TGGTCCGAGGTTGTGTTTGT 59.746 50.000 0.00 0.00 0.00 2.83
58 59 2.794631 CGAGGTTGTGTTTGTTCTTGGC 60.795 50.000 0.00 0.00 0.00 4.52
59 60 1.480545 AGGTTGTGTTTGTTCTTGGCC 59.519 47.619 0.00 0.00 0.00 5.36
66 67 2.428890 TGTTTGTTCTTGGCCGAATGTT 59.571 40.909 0.00 0.00 0.00 2.71
69 70 2.582052 TGTTCTTGGCCGAATGTTTCT 58.418 42.857 0.00 0.00 0.00 2.52
78 79 2.024414 CCGAATGTTTCTTGGGATCCC 58.976 52.381 25.22 25.22 0.00 3.85
79 80 2.620367 CCGAATGTTTCTTGGGATCCCA 60.620 50.000 30.62 30.62 45.63 4.37
90 91 1.203428 TGGGATCCCACCTCTTTCTCA 60.203 52.381 30.62 1.57 41.89 3.27
91 92 2.131023 GGGATCCCACCTCTTTCTCAT 58.869 52.381 26.95 0.00 35.81 2.90
96 97 3.803340 TCCCACCTCTTTCTCATACCTT 58.197 45.455 0.00 0.00 0.00 3.50
99 100 3.447586 CCACCTCTTTCTCATACCTTCGA 59.552 47.826 0.00 0.00 0.00 3.71
100 101 4.425520 CACCTCTTTCTCATACCTTCGAC 58.574 47.826 0.00 0.00 0.00 4.20
105 106 7.778853 ACCTCTTTCTCATACCTTCGACTATTA 59.221 37.037 0.00 0.00 0.00 0.98
106 107 8.293867 CCTCTTTCTCATACCTTCGACTATTAG 58.706 40.741 0.00 0.00 0.00 1.73
110 111 5.473846 TCTCATACCTTCGACTATTAGCTGG 59.526 44.000 0.00 0.00 0.00 4.85
125 126 3.920817 TGGCAACATCCAGGGTCT 58.079 55.556 0.00 0.00 46.17 3.85
127 128 1.380302 GGCAACATCCAGGGTCTGT 59.620 57.895 0.00 0.00 0.00 3.41
135 136 2.534042 TCCAGGGTCTGTCTAAGAGG 57.466 55.000 0.00 0.00 34.84 3.69
136 137 0.827368 CCAGGGTCTGTCTAAGAGGC 59.173 60.000 0.00 0.00 34.84 4.70
141 142 2.303311 GGGTCTGTCTAAGAGGCTGTTT 59.697 50.000 0.90 0.00 34.84 2.83
146 147 1.813178 GTCTAAGAGGCTGTTTTGGGC 59.187 52.381 0.90 0.00 0.00 5.36
147 148 1.705186 TCTAAGAGGCTGTTTTGGGCT 59.295 47.619 0.90 0.00 42.29 5.19
148 149 1.815003 CTAAGAGGCTGTTTTGGGCTG 59.185 52.381 0.90 0.00 39.69 4.85
155 156 1.757423 CTGTTTTGGGCTGGGTTGGG 61.757 60.000 0.00 0.00 0.00 4.12
162 163 2.116125 GCTGGGTTGGGTGCTCTT 59.884 61.111 0.00 0.00 0.00 2.85
168 169 1.662044 GTTGGGTGCTCTTTGCTGG 59.338 57.895 0.00 0.00 43.37 4.85
171 172 1.073897 GGGTGCTCTTTGCTGGTCT 59.926 57.895 0.00 0.00 43.37 3.85
179 180 2.291741 CTCTTTGCTGGTCTTTGTGGAC 59.708 50.000 0.00 0.00 35.66 4.02
182 183 2.543777 TGCTGGTCTTTGTGGACTAC 57.456 50.000 0.00 0.00 36.55 2.73
186 187 3.368531 GCTGGTCTTTGTGGACTACTAGG 60.369 52.174 0.00 0.00 36.55 3.02
189 190 5.091552 TGGTCTTTGTGGACTACTAGGAAT 58.908 41.667 0.00 0.00 36.55 3.01
198 199 8.375493 TGTGGACTACTAGGAATAAATTCACT 57.625 34.615 5.15 2.92 38.53 3.41
222 223 6.800072 ATTGAGGGTGTTTTTCCTAACAAA 57.200 33.333 0.00 0.00 39.54 2.83
231 232 2.871096 TTCCTAACAAACCGGCTGAT 57.129 45.000 10.96 1.85 0.00 2.90
237 238 0.606401 ACAAACCGGCTGATGTCCTG 60.606 55.000 10.96 0.00 0.00 3.86
280 283 6.127925 TGCAGCAGTGGAAATTATTGACTAAG 60.128 38.462 0.00 0.00 0.00 2.18
283 286 5.125417 GCAGTGGAAATTATTGACTAAGCCA 59.875 40.000 0.00 0.00 0.00 4.75
288 291 3.838244 ATTATTGACTAAGCCAGCGGA 57.162 42.857 0.00 0.00 0.00 5.54
289 292 3.838244 TTATTGACTAAGCCAGCGGAT 57.162 42.857 0.00 0.00 0.00 4.18
290 293 2.246719 ATTGACTAAGCCAGCGGATC 57.753 50.000 0.00 0.00 0.00 3.36
303 306 1.461091 GCGGATCTGGACGGTATGGA 61.461 60.000 3.14 0.00 0.00 3.41
308 311 0.629596 TCTGGACGGTATGGAGGAGT 59.370 55.000 0.00 0.00 0.00 3.85
315 318 3.104512 ACGGTATGGAGGAGTTGATCAA 58.895 45.455 3.38 3.38 0.00 2.57
322 325 4.136796 TGGAGGAGTTGATCAACAAAGTG 58.863 43.478 33.92 0.00 43.47 3.16
323 326 4.137543 GGAGGAGTTGATCAACAAAGTGT 58.862 43.478 33.92 16.80 43.47 3.55
329 332 0.387239 GATCAACAAAGTGTGGGCGC 60.387 55.000 0.00 0.00 0.00 6.53
331 334 2.123897 AACAAAGTGTGGGCGCCT 60.124 55.556 28.56 1.80 0.00 5.52
349 352 1.489649 CCTGCCAATCTGATGTCCTCT 59.510 52.381 0.00 0.00 0.00 3.69
353 356 2.485124 GCCAATCTGATGTCCTCTCCTG 60.485 54.545 0.00 0.00 0.00 3.86
356 359 0.041684 TCTGATGTCCTCTCCTGCCA 59.958 55.000 0.00 0.00 0.00 4.92
360 363 4.459089 GTCCTCTCCTGCCACCGC 62.459 72.222 0.00 0.00 0.00 5.68
361 364 4.704103 TCCTCTCCTGCCACCGCT 62.704 66.667 0.00 0.00 35.36 5.52
362 365 2.759973 CCTCTCCTGCCACCGCTA 60.760 66.667 0.00 0.00 35.36 4.26
363 366 2.359169 CCTCTCCTGCCACCGCTAA 61.359 63.158 0.00 0.00 35.36 3.09
364 367 1.690219 CCTCTCCTGCCACCGCTAAT 61.690 60.000 0.00 0.00 35.36 1.73
366 369 0.178068 TCTCCTGCCACCGCTAATTC 59.822 55.000 0.00 0.00 35.36 2.17
367 370 0.815615 CTCCTGCCACCGCTAATTCC 60.816 60.000 0.00 0.00 35.36 3.01
368 371 1.224592 CCTGCCACCGCTAATTCCT 59.775 57.895 0.00 0.00 35.36 3.36
374 377 1.344763 CCACCGCTAATTCCTCCTAGG 59.655 57.143 0.82 0.82 36.46 3.02
376 379 2.434702 CACCGCTAATTCCTCCTAGGTT 59.565 50.000 9.08 0.00 36.53 3.50
377 380 3.113043 ACCGCTAATTCCTCCTAGGTTT 58.887 45.455 9.08 0.00 36.53 3.27
378 381 3.522343 ACCGCTAATTCCTCCTAGGTTTT 59.478 43.478 9.08 0.00 36.53 2.43
379 382 4.018688 ACCGCTAATTCCTCCTAGGTTTTT 60.019 41.667 9.08 0.05 36.53 1.94
381 384 4.335594 CGCTAATTCCTCCTAGGTTTTTGG 59.664 45.833 9.08 5.09 36.53 3.28
382 385 4.645136 GCTAATTCCTCCTAGGTTTTTGGG 59.355 45.833 9.08 3.38 36.53 4.12
383 386 4.759793 AATTCCTCCTAGGTTTTTGGGT 57.240 40.909 9.08 0.00 36.53 4.51
385 388 5.871324 ATTCCTCCTAGGTTTTTGGGTTA 57.129 39.130 9.08 0.00 36.53 2.85
386 389 5.871324 TTCCTCCTAGGTTTTTGGGTTAT 57.129 39.130 9.08 0.00 36.53 1.89
387 390 5.446260 TCCTCCTAGGTTTTTGGGTTATC 57.554 43.478 9.08 0.00 36.53 1.75
388 391 4.228895 TCCTCCTAGGTTTTTGGGTTATCC 59.771 45.833 9.08 0.00 36.53 2.59
389 392 4.017867 CCTCCTAGGTTTTTGGGTTATCCA 60.018 45.833 9.08 0.00 45.43 3.41
390 393 5.340863 CCTCCTAGGTTTTTGGGTTATCCAT 60.341 44.000 9.08 0.00 46.52 3.41
391 394 5.515106 TCCTAGGTTTTTGGGTTATCCATG 58.485 41.667 9.08 0.00 46.52 3.66
393 396 5.719563 CCTAGGTTTTTGGGTTATCCATGTT 59.280 40.000 0.00 0.00 46.52 2.71
395 398 6.508030 AGGTTTTTGGGTTATCCATGTTTT 57.492 33.333 0.00 0.00 46.52 2.43
403 406 4.097892 GGGTTATCCATGTTTTGCAGTAGG 59.902 45.833 0.00 0.00 35.00 3.18
413 416 0.184933 TTGCAGTAGGTTGTTGGCCT 59.815 50.000 3.32 0.00 40.00 5.19
417 420 2.671619 TAGGTTGTTGGCCTGCGC 60.672 61.111 3.32 0.00 37.54 6.09
429 432 2.740055 CTGCGCGCCTTCTTCTGT 60.740 61.111 30.77 0.00 0.00 3.41
430 433 3.020026 CTGCGCGCCTTCTTCTGTG 62.020 63.158 30.77 1.67 0.00 3.66
431 434 2.738521 GCGCGCCTTCTTCTGTGA 60.739 61.111 23.24 0.00 0.00 3.58
432 435 3.016474 GCGCGCCTTCTTCTGTGAC 62.016 63.158 23.24 0.00 0.00 3.67
433 436 1.664649 CGCGCCTTCTTCTGTGACA 60.665 57.895 0.00 0.00 0.00 3.58
434 437 1.016130 CGCGCCTTCTTCTGTGACAT 61.016 55.000 0.00 0.00 0.00 3.06
441 449 2.655090 TCTTCTGTGACATTTGGGCA 57.345 45.000 0.00 0.00 0.00 5.36
442 450 3.159213 TCTTCTGTGACATTTGGGCAT 57.841 42.857 0.00 0.00 0.00 4.40
444 452 2.291209 TCTGTGACATTTGGGCATGT 57.709 45.000 0.00 0.00 40.25 3.21
458 466 1.237285 GCATGTGTGCCTCCGAACTT 61.237 55.000 0.00 0.00 45.76 2.66
459 467 0.798776 CATGTGTGCCTCCGAACTTC 59.201 55.000 0.00 0.00 0.00 3.01
460 468 0.687354 ATGTGTGCCTCCGAACTTCT 59.313 50.000 0.00 0.00 0.00 2.85
461 469 0.249868 TGTGTGCCTCCGAACTTCTG 60.250 55.000 0.00 0.00 0.00 3.02
463 471 0.249868 TGTGCCTCCGAACTTCTGTG 60.250 55.000 0.00 0.00 0.00 3.66
465 473 0.468226 TGCCTCCGAACTTCTGTGTT 59.532 50.000 0.00 0.00 0.00 3.32
468 476 1.867233 CCTCCGAACTTCTGTGTTGTG 59.133 52.381 0.00 0.00 0.00 3.33
469 477 1.261619 CTCCGAACTTCTGTGTTGTGC 59.738 52.381 0.00 0.00 0.00 4.57
470 478 1.013596 CCGAACTTCTGTGTTGTGCA 58.986 50.000 0.00 0.00 0.00 4.57
472 480 2.159448 CCGAACTTCTGTGTTGTGCAAA 60.159 45.455 0.00 0.00 0.00 3.68
473 481 2.845967 CGAACTTCTGTGTTGTGCAAAC 59.154 45.455 0.00 0.00 0.00 2.93
476 484 2.187707 CTTCTGTGTTGTGCAAACTGC 58.812 47.619 11.34 0.00 45.29 4.40
485 493 4.728058 GCAAACTGCGGCTTTTGA 57.272 50.000 23.22 0.00 35.13 2.69
487 495 1.215014 GCAAACTGCGGCTTTTGACC 61.215 55.000 23.22 9.34 35.13 4.02
493 501 4.354155 CGGCTTTTGACCGTCTGA 57.646 55.556 0.00 0.00 45.70 3.27
494 502 1.860078 CGGCTTTTGACCGTCTGAC 59.140 57.895 0.00 0.00 45.70 3.51
495 503 1.860078 GGCTTTTGACCGTCTGACG 59.140 57.895 22.49 22.49 42.11 4.35
496 504 0.878961 GGCTTTTGACCGTCTGACGT 60.879 55.000 26.35 15.62 40.58 4.34
497 505 0.232303 GCTTTTGACCGTCTGACGTG 59.768 55.000 26.35 19.83 40.58 4.49
499 507 0.176219 TTTTGACCGTCTGACGTGGT 59.824 50.000 26.35 18.63 40.58 4.16
501 509 1.031235 TTGACCGTCTGACGTGGTTA 58.969 50.000 26.35 13.41 40.58 2.85
502 510 0.311790 TGACCGTCTGACGTGGTTAC 59.688 55.000 26.35 12.22 40.58 2.50
521 529 0.041663 CGTGGTACGCTTGTGTTTGG 60.042 55.000 0.00 0.00 33.65 3.28
523 531 1.003223 GTGGTACGCTTGTGTTTGGTC 60.003 52.381 0.00 0.00 35.02 4.02
527 535 1.014352 ACGCTTGTGTTTGGTCTGTC 58.986 50.000 0.00 0.00 0.00 3.51
529 537 2.159014 ACGCTTGTGTTTGGTCTGTCTA 60.159 45.455 0.00 0.00 0.00 2.59
537 545 6.301486 TGTGTTTGGTCTGTCTAGTACTCTA 58.699 40.000 0.00 0.00 0.00 2.43
540 548 4.134379 TGGTCTGTCTAGTACTCTACCG 57.866 50.000 0.00 0.00 31.39 4.02
541 549 3.517100 TGGTCTGTCTAGTACTCTACCGT 59.483 47.826 0.00 0.00 31.39 4.83
552 560 3.521947 ACTCTACCGTGTGGCTTTATC 57.478 47.619 0.00 0.00 39.70 1.75
571 579 9.269453 GCTTTATCTATAAAGTCGGGTTTATGT 57.731 33.333 18.85 3.43 46.78 2.29
612 620 3.777465 TTAGCATCACACTAGACGGTC 57.223 47.619 0.00 0.00 0.00 4.79
617 625 3.676049 GCATCACACTAGACGGTCATTCA 60.676 47.826 11.27 0.00 0.00 2.57
619 627 4.174411 TCACACTAGACGGTCATTCAAG 57.826 45.455 11.27 2.44 0.00 3.02
646 654 4.512944 CGATACACCAATTCATCAGAAGGG 59.487 45.833 0.00 0.00 37.14 3.95
658 666 4.842948 TCATCAGAAGGGGATGATTCTAGG 59.157 45.833 1.21 0.00 44.51 3.02
659 667 3.591789 TCAGAAGGGGATGATTCTAGGG 58.408 50.000 0.00 0.00 34.04 3.53
660 668 3.051032 TCAGAAGGGGATGATTCTAGGGT 60.051 47.826 0.00 0.00 34.04 4.34
661 669 3.718956 CAGAAGGGGATGATTCTAGGGTT 59.281 47.826 0.00 0.00 34.04 4.11
662 670 3.977326 AGAAGGGGATGATTCTAGGGTTC 59.023 47.826 0.00 0.00 34.04 3.62
663 671 3.734344 AGGGGATGATTCTAGGGTTCT 57.266 47.619 0.00 0.00 0.00 3.01
664 672 4.852991 AGGGGATGATTCTAGGGTTCTA 57.147 45.455 0.00 0.00 0.00 2.10
665 673 4.757692 AGGGGATGATTCTAGGGTTCTAG 58.242 47.826 0.00 0.00 43.27 2.43
666 674 3.841255 GGGGATGATTCTAGGGTTCTAGG 59.159 52.174 0.00 0.00 42.42 3.02
667 675 4.450861 GGGGATGATTCTAGGGTTCTAGGA 60.451 50.000 0.00 0.00 42.42 2.94
668 676 4.775253 GGGATGATTCTAGGGTTCTAGGAG 59.225 50.000 0.00 0.00 42.42 3.69
669 677 4.775253 GGATGATTCTAGGGTTCTAGGAGG 59.225 50.000 0.00 0.00 42.42 4.30
670 678 5.459831 GGATGATTCTAGGGTTCTAGGAGGA 60.460 48.000 0.00 0.00 42.42 3.71
671 679 5.483174 TGATTCTAGGGTTCTAGGAGGAA 57.517 43.478 0.00 0.00 42.42 3.36
672 680 5.459505 TGATTCTAGGGTTCTAGGAGGAAG 58.540 45.833 0.00 0.00 42.42 3.46
673 681 5.195960 TGATTCTAGGGTTCTAGGAGGAAGA 59.804 44.000 0.00 0.00 42.42 2.87
674 682 5.547631 TTCTAGGGTTCTAGGAGGAAGAA 57.452 43.478 0.00 0.00 42.42 2.52
675 683 5.132043 TCTAGGGTTCTAGGAGGAAGAAG 57.868 47.826 0.00 0.00 42.42 2.85
676 684 3.123392 AGGGTTCTAGGAGGAAGAAGG 57.877 52.381 0.00 0.00 33.75 3.46
677 685 2.660556 AGGGTTCTAGGAGGAAGAAGGA 59.339 50.000 0.00 0.00 33.75 3.36
678 686 3.035363 GGGTTCTAGGAGGAAGAAGGAG 58.965 54.545 0.00 0.00 33.75 3.69
679 687 3.309994 GGGTTCTAGGAGGAAGAAGGAGA 60.310 52.174 0.00 0.00 33.75 3.71
680 688 4.552674 GGTTCTAGGAGGAAGAAGGAGAT 58.447 47.826 0.00 0.00 33.75 2.75
681 689 4.587262 GGTTCTAGGAGGAAGAAGGAGATC 59.413 50.000 0.00 0.00 33.75 2.75
682 690 5.454966 GTTCTAGGAGGAAGAAGGAGATCT 58.545 45.833 0.00 0.00 33.75 2.75
683 691 5.742562 TCTAGGAGGAAGAAGGAGATCTT 57.257 43.478 0.00 0.00 42.24 2.40
684 692 6.850263 TCTAGGAGGAAGAAGGAGATCTTA 57.150 41.667 0.00 0.00 39.70 2.10
685 693 7.415004 TCTAGGAGGAAGAAGGAGATCTTAT 57.585 40.000 0.00 0.00 39.70 1.73
686 694 7.466804 TCTAGGAGGAAGAAGGAGATCTTATC 58.533 42.308 0.00 0.00 39.70 1.75
687 695 6.036926 AGGAGGAAGAAGGAGATCTTATCA 57.963 41.667 0.00 0.00 39.70 2.15
688 696 6.448202 AGGAGGAAGAAGGAGATCTTATCAA 58.552 40.000 0.00 0.00 39.70 2.57
689 697 6.905776 AGGAGGAAGAAGGAGATCTTATCAAA 59.094 38.462 0.00 0.00 39.70 2.69
690 698 7.404396 AGGAGGAAGAAGGAGATCTTATCAAAA 59.596 37.037 0.00 0.00 39.70 2.44
691 699 8.049721 GGAGGAAGAAGGAGATCTTATCAAAAA 58.950 37.037 0.00 0.00 39.70 1.94
692 700 9.108284 GAGGAAGAAGGAGATCTTATCAAAAAG 57.892 37.037 0.00 0.00 39.70 2.27
733 741 0.320247 ACGCAGGTGCAGAGAGAAAG 60.320 55.000 2.33 0.00 42.21 2.62
734 742 0.037882 CGCAGGTGCAGAGAGAAAGA 60.038 55.000 2.33 0.00 42.21 2.52
735 743 1.724429 GCAGGTGCAGAGAGAAAGAG 58.276 55.000 0.00 0.00 41.59 2.85
736 744 1.274728 GCAGGTGCAGAGAGAAAGAGA 59.725 52.381 0.00 0.00 41.59 3.10
737 745 2.674747 GCAGGTGCAGAGAGAAAGAGAG 60.675 54.545 0.00 0.00 41.59 3.20
738 746 2.824936 CAGGTGCAGAGAGAAAGAGAGA 59.175 50.000 0.00 0.00 0.00 3.10
739 747 3.257873 CAGGTGCAGAGAGAAAGAGAGAA 59.742 47.826 0.00 0.00 0.00 2.87
742 750 4.380867 GGTGCAGAGAGAAAGAGAGAAGAG 60.381 50.000 0.00 0.00 0.00 2.85
752 760 9.753674 AGAGAAAGAGAGAAGAGAAAAGAGATA 57.246 33.333 0.00 0.00 0.00 1.98
764 772 8.144862 AGAGAAAAGAGATATCTGTTCTTGGT 57.855 34.615 21.04 8.91 42.59 3.67
774 782 0.250295 TGTTCTTGGTCGCCTCCTTG 60.250 55.000 0.00 0.00 0.00 3.61
816 824 1.005512 TGCTGACCGTTGCGTACAT 60.006 52.632 0.00 0.00 0.00 2.29
817 825 1.288419 TGCTGACCGTTGCGTACATG 61.288 55.000 0.00 0.00 0.00 3.21
818 826 1.966493 GCTGACCGTTGCGTACATGG 61.966 60.000 0.00 0.00 0.00 3.66
819 827 1.358725 CTGACCGTTGCGTACATGGG 61.359 60.000 0.00 0.00 0.00 4.00
820 828 2.744709 ACCGTTGCGTACATGGGC 60.745 61.111 0.00 0.00 0.00 5.36
821 829 3.505184 CCGTTGCGTACATGGGCC 61.505 66.667 0.00 0.00 0.00 5.80
831 839 2.550699 TACATGGGCCGGCCTTTGAG 62.551 60.000 42.70 28.64 36.10 3.02
911 1793 1.069090 GTGGCAGACTTGGTCGTGA 59.931 57.895 0.00 0.00 37.67 4.35
973 1893 4.554036 GCCCCGCCATCTCACCTC 62.554 72.222 0.00 0.00 0.00 3.85
992 1912 3.007614 CCTCGGGAGAAGTTACCAGAAAA 59.992 47.826 0.00 0.00 39.18 2.29
993 1913 4.323562 CCTCGGGAGAAGTTACCAGAAAAT 60.324 45.833 0.00 0.00 39.18 1.82
1143 2063 0.252103 TCGCCAGGTAAACTCTCCCT 60.252 55.000 0.00 0.00 0.00 4.20
1150 2070 4.518249 CAGGTAAACTCTCCCTCCAATTC 58.482 47.826 0.00 0.00 0.00 2.17
1155 2075 3.990959 ACTCTCCCTCCAATTCAACTC 57.009 47.619 0.00 0.00 0.00 3.01
1253 2173 4.782019 TGAATTCGAATCAAAACCCCTG 57.218 40.909 11.83 0.00 0.00 4.45
1280 2200 2.216898 CCCTTCGGAGATTGATCTTGC 58.783 52.381 0.00 0.00 37.25 4.01
1281 2201 2.158842 CCCTTCGGAGATTGATCTTGCT 60.159 50.000 0.00 0.00 37.25 3.91
1282 2202 2.871022 CCTTCGGAGATTGATCTTGCTG 59.129 50.000 0.00 0.00 37.25 4.41
1283 2203 3.529533 CTTCGGAGATTGATCTTGCTGT 58.470 45.455 0.00 0.00 37.25 4.40
1284 2204 2.897436 TCGGAGATTGATCTTGCTGTG 58.103 47.619 0.00 0.00 37.25 3.66
1285 2205 1.938577 CGGAGATTGATCTTGCTGTGG 59.061 52.381 0.00 0.00 37.25 4.17
1286 2206 2.295885 GGAGATTGATCTTGCTGTGGG 58.704 52.381 0.00 0.00 37.25 4.61
1287 2207 2.092753 GGAGATTGATCTTGCTGTGGGA 60.093 50.000 0.00 0.00 37.25 4.37
1288 2208 3.434739 GGAGATTGATCTTGCTGTGGGAT 60.435 47.826 0.00 0.00 37.25 3.85
1289 2209 4.205587 GAGATTGATCTTGCTGTGGGATT 58.794 43.478 0.00 0.00 37.25 3.01
1290 2210 4.205587 AGATTGATCTTGCTGTGGGATTC 58.794 43.478 0.00 0.00 31.97 2.52
1291 2211 3.438216 TTGATCTTGCTGTGGGATTCA 57.562 42.857 0.00 0.00 0.00 2.57
1292 2212 3.438216 TGATCTTGCTGTGGGATTCAA 57.562 42.857 0.00 0.00 0.00 2.69
1326 2246 1.202806 TGCAGGTTTGTCAAGGAGGAG 60.203 52.381 0.00 0.00 0.00 3.69
1407 2327 1.413812 GGCATCCCATTCCACCAAATC 59.586 52.381 0.00 0.00 0.00 2.17
1408 2328 1.067516 GCATCCCATTCCACCAAATCG 59.932 52.381 0.00 0.00 0.00 3.34
1454 2374 0.747255 CCGTATCTGGTACTGCAGCT 59.253 55.000 15.27 3.67 0.00 4.24
1551 2471 5.643379 TGAAATGAGCATTTGTTAGGTCC 57.357 39.130 12.73 0.00 40.77 4.46
1583 2503 3.294214 GCAATCAATGGATCACCCTCTT 58.706 45.455 0.00 0.00 35.38 2.85
1689 2609 1.267261 GACTACGTCGGCATAGCATCT 59.733 52.381 0.00 0.00 0.00 2.90
1755 2675 1.263356 CTCAGGGAGAAACCACCGTA 58.737 55.000 0.00 0.00 41.20 4.02
1878 2798 7.035612 GGTAATTATTTGTTGGGAGCTTTCTG 58.964 38.462 0.00 0.00 0.00 3.02
1894 2851 8.983724 GGAGCTTTCTGATAGACAATAATGTAC 58.016 37.037 0.00 0.00 40.74 2.90
1908 2865 8.375608 ACAATAATGTACAGAGAATCAGCATC 57.624 34.615 0.33 0.00 38.24 3.91
1914 2871 3.106054 ACAGAGAATCAGCATCCAGAGT 58.894 45.455 0.00 0.00 37.82 3.24
1925 2882 2.811873 GCATCCAGAGTTGTGGTTGAGT 60.812 50.000 9.77 0.00 38.96 3.41
1929 2886 1.860950 CAGAGTTGTGGTTGAGTGTCG 59.139 52.381 0.00 0.00 0.00 4.35
1931 2888 0.179056 AGTTGTGGTTGAGTGTCGGG 60.179 55.000 0.00 0.00 0.00 5.14
1932 2889 1.525077 TTGTGGTTGAGTGTCGGGC 60.525 57.895 0.00 0.00 0.00 6.13
1943 2900 3.155167 GTCGGGCCCTCTACCCTG 61.155 72.222 22.43 0.54 46.04 4.45
1945 2902 2.122813 CGGGCCCTCTACCCTGAT 60.123 66.667 22.43 0.00 46.04 2.90
1958 2915 6.270927 CCTCTACCCTGATGGATAATTCAGAA 59.729 42.308 1.63 0.00 41.53 3.02
1992 2949 6.367969 GCTAGTTCTAGAATCACCACGAAAAA 59.632 38.462 8.75 0.00 0.00 1.94
2017 2974 9.944376 AAAGCACAATAAAAGAGTAGTAGATCA 57.056 29.630 0.00 0.00 0.00 2.92
2090 3048 7.557719 ACTCCCATGTCCTAAAAGTTATCATTG 59.442 37.037 0.00 0.00 0.00 2.82
2097 3055 5.945784 TCCTAAAAGTTATCATTGCTGCACT 59.054 36.000 0.00 0.00 0.00 4.40
2110 3068 4.212143 TGCTGCACTCAAGTTCATAGAT 57.788 40.909 0.00 0.00 0.00 1.98
2113 3071 4.190001 CTGCACTCAAGTTCATAGATGCT 58.810 43.478 0.00 0.00 33.03 3.79
2141 3099 1.164411 TAACAACCCATTCAGCTGCG 58.836 50.000 9.47 0.00 0.00 5.18
2144 3102 1.073025 AACCCATTCAGCTGCGTGA 59.927 52.632 9.47 0.00 0.00 4.35
2208 3166 1.134280 TGGGTTTTGCCAACAATGTGG 60.134 47.619 0.00 0.00 42.05 4.17
2218 3176 3.259123 GCCAACAATGTGGAAGGAGATTT 59.741 43.478 6.13 0.00 41.65 2.17
2219 3177 4.262592 GCCAACAATGTGGAAGGAGATTTT 60.263 41.667 6.13 0.00 41.65 1.82
2270 3228 9.176181 GATTTTGAAATAAGTACGCTTCAAACA 57.824 29.630 18.55 13.48 43.68 2.83
2330 3291 8.204160 TGTATGTTAGCAGCTATGTTAGTTGAT 58.796 33.333 2.02 0.00 39.07 2.57
2338 3299 8.034215 AGCAGCTATGTTAGTTGATATCATCTC 58.966 37.037 17.62 7.36 39.07 2.75
2351 3313 5.944007 TGATATCATCTCCATGCTTTGATGG 59.056 40.000 0.00 0.00 43.96 3.51
2372 3334 9.407380 TGATGGTCTGCATAGTATAAATTGTTT 57.593 29.630 0.00 0.00 0.00 2.83
2480 3447 5.862678 ACATACTAGCCTTCTTCTTCCTC 57.137 43.478 0.00 0.00 0.00 3.71
2488 3455 3.526534 CCTTCTTCTTCCTCCGATTGAC 58.473 50.000 0.00 0.00 0.00 3.18
2499 3466 2.746277 GATTGACTGCCGCCCGTT 60.746 61.111 0.00 0.00 0.00 4.44
2526 3501 1.262950 TGAAATCGCACTGAACCAACG 59.737 47.619 0.00 0.00 0.00 4.10
2778 3753 8.484575 TGAAATGCATTTGGTATGTATGGATTT 58.515 29.630 28.67 11.74 46.22 2.17
2866 3841 8.440059 TCTGTTATATGTTCTTTACAAAGCGTG 58.560 33.333 0.00 0.00 40.89 5.34
2870 3845 3.537580 TGTTCTTTACAAAGCGTGGAGT 58.462 40.909 0.00 0.00 35.99 3.85
3012 3991 2.808543 GTCTGATGTGGTTGTTGAGGAC 59.191 50.000 0.00 0.00 0.00 3.85
3039 4018 9.265901 GAAGAATTTTATGCTGCACTAGAGATA 57.734 33.333 3.57 0.00 0.00 1.98
3045 4024 3.570540 TGCTGCACTAGAGATACCAGAT 58.429 45.455 0.00 0.00 0.00 2.90
3068 4047 1.784525 ACTTTCACGCTACAGACAGC 58.215 50.000 0.00 0.00 38.23 4.40
3105 4084 7.287927 ACACAATTATAGTCTTAGCTGGCTAGA 59.712 37.037 0.00 0.00 0.00 2.43
3110 4089 8.713708 TTATAGTCTTAGCTGGCTAGATTTCT 57.286 34.615 0.00 0.00 0.00 2.52
3113 4092 6.811954 AGTCTTAGCTGGCTAGATTTCTTAC 58.188 40.000 0.00 0.00 0.00 2.34
3164 4143 7.389053 GGATTATATCAAGAGATGAAACGCCTT 59.611 37.037 0.00 0.00 42.54 4.35
3191 4170 5.507985 GCTTATTGATTCCCAGTTGCATACC 60.508 44.000 0.00 0.00 0.00 2.73
3195 4174 2.969821 TTCCCAGTTGCATACCACTT 57.030 45.000 0.00 0.00 0.00 3.16
3198 4177 1.812571 CCCAGTTGCATACCACTTCAC 59.187 52.381 0.00 0.00 0.00 3.18
3277 4260 9.978044 TCAAGAGATGACATATACATGAAGAAG 57.022 33.333 0.00 0.00 35.96 2.85
3278 4261 9.205719 CAAGAGATGACATATACATGAAGAAGG 57.794 37.037 0.00 0.00 35.96 3.46
3279 4262 8.489676 AGAGATGACATATACATGAAGAAGGT 57.510 34.615 0.00 0.00 35.96 3.50
3280 4263 8.366401 AGAGATGACATATACATGAAGAAGGTG 58.634 37.037 0.00 0.00 35.96 4.00
3281 4264 8.027524 AGATGACATATACATGAAGAAGGTGT 57.972 34.615 0.00 0.00 35.96 4.16
3282 4265 8.147058 AGATGACATATACATGAAGAAGGTGTC 58.853 37.037 0.00 5.21 35.96 3.67
3283 4266 7.181569 TGACATATACATGAAGAAGGTGTCA 57.818 36.000 0.00 7.66 40.51 3.58
3284 4267 7.267857 TGACATATACATGAAGAAGGTGTCAG 58.732 38.462 0.00 0.00 38.64 3.51
3285 4268 6.586344 ACATATACATGAAGAAGGTGTCAGG 58.414 40.000 0.00 0.00 35.96 3.86
3286 4269 6.384015 ACATATACATGAAGAAGGTGTCAGGA 59.616 38.462 0.00 0.00 35.96 3.86
3287 4270 5.965033 ATACATGAAGAAGGTGTCAGGAT 57.035 39.130 0.00 0.00 30.35 3.24
3288 4271 4.647564 ACATGAAGAAGGTGTCAGGATT 57.352 40.909 0.00 0.00 30.35 3.01
3289 4272 4.990526 ACATGAAGAAGGTGTCAGGATTT 58.009 39.130 0.00 0.00 30.35 2.17
3290 4273 4.763793 ACATGAAGAAGGTGTCAGGATTTG 59.236 41.667 0.00 0.00 30.35 2.32
3291 4274 4.705110 TGAAGAAGGTGTCAGGATTTGA 57.295 40.909 0.00 0.00 0.00 2.69
3292 4275 5.246981 TGAAGAAGGTGTCAGGATTTGAT 57.753 39.130 0.00 0.00 38.29 2.57
3340 4323 7.823310 AGATAGATGAATGCCTGCTAAATGTAG 59.177 37.037 0.00 0.00 0.00 2.74
3406 4389 3.364764 GCTTTTGCGCAGGATGATCTATC 60.365 47.826 11.31 0.00 34.25 2.08
3501 4485 6.102663 GGTTTACGATGAGAGCTGCATATAT 58.897 40.000 1.02 0.00 0.00 0.86
3507 4491 6.151817 ACGATGAGAGCTGCATATATTGTAGA 59.848 38.462 1.02 0.00 40.21 2.59
3508 4492 7.147932 ACGATGAGAGCTGCATATATTGTAGAT 60.148 37.037 1.02 1.87 40.21 1.98
3509 4493 7.705752 CGATGAGAGCTGCATATATTGTAGATT 59.294 37.037 1.02 0.00 40.21 2.40
3510 4494 9.381033 GATGAGAGCTGCATATATTGTAGATTT 57.619 33.333 1.02 0.00 40.21 2.17
3511 4495 8.543862 TGAGAGCTGCATATATTGTAGATTTG 57.456 34.615 1.02 0.00 40.21 2.32
3512 4496 8.152898 TGAGAGCTGCATATATTGTAGATTTGT 58.847 33.333 1.02 0.00 40.21 2.83
3513 4497 9.645059 GAGAGCTGCATATATTGTAGATTTGTA 57.355 33.333 1.02 0.00 40.21 2.41
3514 4498 9.650539 AGAGCTGCATATATTGTAGATTTGTAG 57.349 33.333 1.02 0.00 40.21 2.74
3515 4499 9.429359 GAGCTGCATATATTGTAGATTTGTAGT 57.571 33.333 1.02 0.00 40.21 2.73
3542 4526 2.262211 GTCTCATGCGAAATTTTGGCC 58.738 47.619 12.72 0.00 33.01 5.36
3558 4542 1.273267 TGGCCAGGTGTCTCTAGTCAT 60.273 52.381 0.00 0.00 0.00 3.06
3571 4555 9.593134 GTGTCTCTAGTCATTTCTCAACATAAT 57.407 33.333 0.00 0.00 0.00 1.28
3578 4562 8.037382 AGTCATTTCTCAACATAATCACTGTG 57.963 34.615 0.17 0.17 0.00 3.66
3581 4565 9.500785 TCATTTCTCAACATAATCACTGTGTAA 57.499 29.630 7.79 0.00 0.00 2.41
3585 4569 9.936759 TTCTCAACATAATCACTGTGTAATACA 57.063 29.630 7.79 0.00 37.78 2.29
3602 4586 6.486657 TGTAATACAGCCATCTTATTTGGAGC 59.513 38.462 0.00 0.00 36.26 4.70
3658 4656 1.759445 GCTGCTTCCAGGTGATAGAGA 59.241 52.381 0.00 0.00 39.54 3.10
3687 4687 3.864003 GCGTGGAGGATTACTCTGTAAAC 59.136 47.826 0.00 0.00 45.83 2.01
3688 4688 4.430908 CGTGGAGGATTACTCTGTAAACC 58.569 47.826 8.19 8.19 45.83 3.27
3699 4699 9.685828 GATTACTCTGTAAACCATGTAGAGATC 57.314 37.037 0.00 0.00 38.53 2.75
3707 4707 7.706607 TGTAAACCATGTAGAGATCTTGAATCG 59.293 37.037 0.00 0.00 0.00 3.34
3714 4714 6.556212 TGTAGAGATCTTGAATCGTCAGAAC 58.444 40.000 0.00 0.00 34.49 3.01
3716 4716 5.649557 AGAGATCTTGAATCGTCAGAACAG 58.350 41.667 0.00 0.00 34.49 3.16
3717 4717 5.417266 AGAGATCTTGAATCGTCAGAACAGA 59.583 40.000 0.00 0.00 34.49 3.41
3718 4718 6.096705 AGAGATCTTGAATCGTCAGAACAGAT 59.903 38.462 0.00 0.00 34.49 2.90
3720 4720 3.928992 TCTTGAATCGTCAGAACAGATGC 59.071 43.478 0.00 0.00 34.49 3.91
3738 4741 5.754890 CAGATGCTGTTTTAGTTGCCTTTTT 59.245 36.000 0.00 0.00 0.00 1.94
3742 4745 5.105310 TGCTGTTTTAGTTGCCTTTTTGGTA 60.105 36.000 0.00 0.00 38.35 3.25
3745 4748 7.011950 GCTGTTTTAGTTGCCTTTTTGGTAAAT 59.988 33.333 0.00 0.00 41.99 1.40
3761 4764 5.053145 TGGTAAATTTTCATTGGTGTGTGC 58.947 37.500 0.00 0.00 0.00 4.57
3774 4777 4.256110 TGGTGTGTGCATAGAGATTGAAG 58.744 43.478 0.00 0.00 0.00 3.02
3780 4783 4.713814 TGTGCATAGAGATTGAAGAGTCCT 59.286 41.667 0.00 0.00 0.00 3.85
3784 4787 5.163364 GCATAGAGATTGAAGAGTCCTGGAA 60.163 44.000 0.00 0.00 0.00 3.53
3798 4801 2.173356 TCCTGGAACCTTATGGATGCTG 59.827 50.000 0.81 0.00 37.04 4.41
3802 4805 3.136443 TGGAACCTTATGGATGCTGTAGG 59.864 47.826 0.81 0.00 37.04 3.18
3806 4809 5.291905 ACCTTATGGATGCTGTAGGTAAC 57.708 43.478 0.81 0.00 34.39 2.50
3808 4811 5.057149 CCTTATGGATGCTGTAGGTAACAC 58.943 45.833 0.00 0.00 34.84 3.32
3813 4816 4.122776 GGATGCTGTAGGTAACACAGATG 58.877 47.826 12.69 0.00 43.81 2.90
3883 4909 8.905702 GCCTGCAGAACGATATATTTTATTTTG 58.094 33.333 17.39 0.00 0.00 2.44
3951 4977 7.738345 ACCGCAACATTTTAAAAATAGCAATC 58.262 30.769 4.44 0.00 0.00 2.67
3974 5000 4.009675 TGAACTCACTTCCATAATGTGCC 58.990 43.478 0.00 0.00 0.00 5.01
4033 5063 8.778059 AGAGTTGTATTAGTATCAAAATGGGGA 58.222 33.333 0.00 0.00 0.00 4.81
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.197766 ACGGACAGCCAAAGAAGATATGA 59.802 43.478 0.00 0.00 0.00 2.15
1 2 3.535561 ACGGACAGCCAAAGAAGATATG 58.464 45.455 0.00 0.00 0.00 1.78
2 3 3.914426 ACGGACAGCCAAAGAAGATAT 57.086 42.857 0.00 0.00 0.00 1.63
3 4 3.334691 CAACGGACAGCCAAAGAAGATA 58.665 45.455 0.00 0.00 0.00 1.98
4 5 2.154462 CAACGGACAGCCAAAGAAGAT 58.846 47.619 0.00 0.00 0.00 2.40
5 6 1.593196 CAACGGACAGCCAAAGAAGA 58.407 50.000 0.00 0.00 0.00 2.87
6 7 0.593128 CCAACGGACAGCCAAAGAAG 59.407 55.000 0.00 0.00 0.00 2.85
7 8 1.452145 GCCAACGGACAGCCAAAGAA 61.452 55.000 0.00 0.00 0.00 2.52
8 9 1.896660 GCCAACGGACAGCCAAAGA 60.897 57.895 0.00 0.00 0.00 2.52
9 10 2.644992 GCCAACGGACAGCCAAAG 59.355 61.111 0.00 0.00 0.00 2.77
10 11 2.909965 GGCCAACGGACAGCCAAA 60.910 61.111 0.00 0.00 46.34 3.28
13 14 2.909965 TTTGGCCAACGGACAGCC 60.910 61.111 20.35 0.00 44.10 4.85
14 15 2.193536 AGTTTGGCCAACGGACAGC 61.194 57.895 20.35 0.00 44.10 4.40
15 16 1.654220 CAGTTTGGCCAACGGACAG 59.346 57.895 20.35 7.27 44.10 3.51
16 17 1.826054 CCAGTTTGGCCAACGGACA 60.826 57.895 20.35 0.00 40.08 4.02
17 18 1.792118 GACCAGTTTGGCCAACGGAC 61.792 60.000 26.92 19.56 42.67 4.79
18 19 1.527380 GACCAGTTTGGCCAACGGA 60.527 57.895 26.92 9.31 42.67 4.69
19 20 2.561037 GGACCAGTTTGGCCAACGG 61.561 63.158 20.35 20.82 42.67 4.44
20 21 2.903547 CGGACCAGTTTGGCCAACG 61.904 63.158 20.35 13.03 42.67 4.10
21 22 1.515521 CTCGGACCAGTTTGGCCAAC 61.516 60.000 20.35 13.66 42.67 3.77
30 31 0.544697 AAACACAACCTCGGACCAGT 59.455 50.000 0.00 0.00 0.00 4.00
31 32 0.944386 CAAACACAACCTCGGACCAG 59.056 55.000 0.00 0.00 0.00 4.00
35 36 2.680841 CAAGAACAAACACAACCTCGGA 59.319 45.455 0.00 0.00 0.00 4.55
37 38 2.794631 GCCAAGAACAAACACAACCTCG 60.795 50.000 0.00 0.00 0.00 4.63
39 40 1.480545 GGCCAAGAACAAACACAACCT 59.519 47.619 0.00 0.00 0.00 3.50
42 43 1.464734 TCGGCCAAGAACAAACACAA 58.535 45.000 2.24 0.00 0.00 3.33
49 50 2.582052 AGAAACATTCGGCCAAGAACA 58.418 42.857 2.24 0.00 32.39 3.18
51 52 2.295909 CCAAGAAACATTCGGCCAAGAA 59.704 45.455 2.24 0.00 34.02 2.52
58 59 2.024414 GGGATCCCAAGAAACATTCGG 58.976 52.381 26.95 0.00 35.81 4.30
59 60 2.722094 TGGGATCCCAAGAAACATTCG 58.278 47.619 32.09 0.00 44.12 3.34
78 79 4.158764 AGTCGAAGGTATGAGAAAGAGGTG 59.841 45.833 0.00 0.00 0.00 4.00
79 80 4.345854 AGTCGAAGGTATGAGAAAGAGGT 58.654 43.478 0.00 0.00 0.00 3.85
90 91 3.895656 TGCCAGCTAATAGTCGAAGGTAT 59.104 43.478 0.00 0.00 0.00 2.73
91 92 3.293337 TGCCAGCTAATAGTCGAAGGTA 58.707 45.455 0.00 0.00 0.00 3.08
96 97 3.492656 GGATGTTGCCAGCTAATAGTCGA 60.493 47.826 0.00 0.00 0.00 4.20
99 100 3.931907 TGGATGTTGCCAGCTAATAGT 57.068 42.857 0.00 0.00 33.10 2.12
110 111 0.326264 AGACAGACCCTGGATGTTGC 59.674 55.000 0.00 0.00 35.51 4.17
118 119 1.480137 CAGCCTCTTAGACAGACCCTG 59.520 57.143 0.00 0.00 37.52 4.45
120 121 1.562783 ACAGCCTCTTAGACAGACCC 58.437 55.000 0.00 0.00 0.00 4.46
125 126 2.814097 GCCCAAAACAGCCTCTTAGACA 60.814 50.000 0.00 0.00 0.00 3.41
127 128 1.705186 AGCCCAAAACAGCCTCTTAGA 59.295 47.619 0.00 0.00 0.00 2.10
135 136 1.069596 CAACCCAGCCCAAAACAGC 59.930 57.895 0.00 0.00 0.00 4.40
136 137 1.747774 CCAACCCAGCCCAAAACAG 59.252 57.895 0.00 0.00 0.00 3.16
141 142 4.932105 GCACCCAACCCAGCCCAA 62.932 66.667 0.00 0.00 0.00 4.12
146 147 1.809567 GCAAAGAGCACCCAACCCAG 61.810 60.000 0.00 0.00 44.79 4.45
147 148 1.832167 GCAAAGAGCACCCAACCCA 60.832 57.895 0.00 0.00 44.79 4.51
148 149 3.051210 GCAAAGAGCACCCAACCC 58.949 61.111 0.00 0.00 44.79 4.11
159 160 2.092429 AGTCCACAAAGACCAGCAAAGA 60.092 45.455 0.00 0.00 37.49 2.52
162 163 2.438021 AGTAGTCCACAAAGACCAGCAA 59.562 45.455 0.00 0.00 37.49 3.91
168 169 9.668497 AATTTATTCCTAGTAGTCCACAAAGAC 57.332 33.333 0.00 0.00 37.01 3.01
171 172 9.444600 GTGAATTTATTCCTAGTAGTCCACAAA 57.555 33.333 0.00 0.00 35.97 2.83
182 183 9.277783 CACCCTCAATAGTGAATTTATTCCTAG 57.722 37.037 0.00 0.00 36.01 3.02
189 190 8.581578 GGAAAAACACCCTCAATAGTGAATTTA 58.418 33.333 0.00 0.00 37.43 1.40
198 199 7.201929 GGTTTGTTAGGAAAAACACCCTCAATA 60.202 37.037 0.00 0.00 39.02 1.90
201 202 4.403113 GGTTTGTTAGGAAAAACACCCTCA 59.597 41.667 0.00 0.00 39.02 3.86
202 203 4.498513 CGGTTTGTTAGGAAAAACACCCTC 60.499 45.833 0.00 0.00 39.02 4.30
214 215 1.737793 GACATCAGCCGGTTTGTTAGG 59.262 52.381 1.90 0.00 0.00 2.69
222 223 0.981183 TAAACAGGACATCAGCCGGT 59.019 50.000 1.90 0.00 35.28 5.28
231 232 8.296713 GCAAGAAGATACATTTTAAACAGGACA 58.703 33.333 0.00 0.00 0.00 4.02
237 238 7.809806 ACTGCTGCAAGAAGATACATTTTAAAC 59.190 33.333 3.02 0.00 45.09 2.01
283 286 1.464376 CCATACCGTCCAGATCCGCT 61.464 60.000 0.00 0.00 0.00 5.52
288 291 1.218196 ACTCCTCCATACCGTCCAGAT 59.782 52.381 0.00 0.00 0.00 2.90
289 292 0.629596 ACTCCTCCATACCGTCCAGA 59.370 55.000 0.00 0.00 0.00 3.86
290 293 1.137086 CAACTCCTCCATACCGTCCAG 59.863 57.143 0.00 0.00 0.00 3.86
297 300 5.940470 ACTTTGTTGATCAACTCCTCCATAC 59.060 40.000 32.57 9.62 41.67 2.39
303 306 3.885297 CCACACTTTGTTGATCAACTCCT 59.115 43.478 32.57 14.29 41.67 3.69
308 311 1.336440 CGCCCACACTTTGTTGATCAA 59.664 47.619 3.38 3.38 0.00 2.57
315 318 2.906897 CAGGCGCCCACACTTTGT 60.907 61.111 26.15 0.00 0.00 2.83
329 332 1.489649 AGAGGACATCAGATTGGCAGG 59.510 52.381 0.00 0.00 0.00 4.85
331 334 1.487976 GGAGAGGACATCAGATTGGCA 59.512 52.381 0.00 0.00 0.00 4.92
337 340 0.041684 TGGCAGGAGAGGACATCAGA 59.958 55.000 0.00 0.00 0.00 3.27
338 341 0.177604 GTGGCAGGAGAGGACATCAG 59.822 60.000 0.00 0.00 0.00 2.90
349 352 1.223487 GGAATTAGCGGTGGCAGGA 59.777 57.895 0.00 0.00 43.41 3.86
353 356 0.756903 TAGGAGGAATTAGCGGTGGC 59.243 55.000 0.00 0.00 40.37 5.01
356 359 2.473576 ACCTAGGAGGAATTAGCGGT 57.526 50.000 17.98 0.00 37.67 5.68
360 363 5.827756 ACCCAAAAACCTAGGAGGAATTAG 58.172 41.667 17.98 0.05 37.67 1.73
361 364 5.871324 ACCCAAAAACCTAGGAGGAATTA 57.129 39.130 17.98 0.00 37.67 1.40
362 365 4.759793 ACCCAAAAACCTAGGAGGAATT 57.240 40.909 17.98 0.00 37.67 2.17
363 366 4.759793 AACCCAAAAACCTAGGAGGAAT 57.240 40.909 17.98 0.00 37.67 3.01
364 367 5.281349 GGATAACCCAAAAACCTAGGAGGAA 60.281 44.000 17.98 1.36 35.07 3.36
366 369 4.017867 TGGATAACCCAAAAACCTAGGAGG 60.018 45.833 17.98 8.72 43.29 4.30
367 370 5.187621 TGGATAACCCAAAAACCTAGGAG 57.812 43.478 17.98 0.00 43.29 3.69
381 384 4.705023 ACCTACTGCAAAACATGGATAACC 59.295 41.667 0.00 0.00 0.00 2.85
382 385 5.897377 ACCTACTGCAAAACATGGATAAC 57.103 39.130 0.00 0.00 0.00 1.89
383 386 5.772672 ACAACCTACTGCAAAACATGGATAA 59.227 36.000 0.00 0.00 0.00 1.75
385 388 4.151883 ACAACCTACTGCAAAACATGGAT 58.848 39.130 0.00 0.00 0.00 3.41
386 389 3.561143 ACAACCTACTGCAAAACATGGA 58.439 40.909 0.00 0.00 0.00 3.41
387 390 4.050553 CAACAACCTACTGCAAAACATGG 58.949 43.478 0.00 0.00 0.00 3.66
388 391 4.050553 CCAACAACCTACTGCAAAACATG 58.949 43.478 0.00 0.00 0.00 3.21
389 392 3.492482 GCCAACAACCTACTGCAAAACAT 60.492 43.478 0.00 0.00 0.00 2.71
390 393 2.159170 GCCAACAACCTACTGCAAAACA 60.159 45.455 0.00 0.00 0.00 2.83
391 394 2.469826 GCCAACAACCTACTGCAAAAC 58.530 47.619 0.00 0.00 0.00 2.43
393 396 1.036707 GGCCAACAACCTACTGCAAA 58.963 50.000 0.00 0.00 0.00 3.68
395 398 0.537143 CAGGCCAACAACCTACTGCA 60.537 55.000 5.01 0.00 35.10 4.41
413 416 3.043713 CACAGAAGAAGGCGCGCA 61.044 61.111 34.42 0.00 0.00 6.09
417 420 2.095567 CCAAATGTCACAGAAGAAGGCG 60.096 50.000 0.00 0.00 0.00 5.52
426 429 1.614903 ACACATGCCCAAATGTCACAG 59.385 47.619 0.00 0.00 38.75 3.66
429 432 0.317799 GCACACATGCCCAAATGTCA 59.682 50.000 0.00 0.00 46.97 3.58
430 433 3.126729 GCACACATGCCCAAATGTC 57.873 52.632 0.00 0.00 46.97 3.06
441 449 0.687354 AGAAGTTCGGAGGCACACAT 59.313 50.000 0.00 0.00 0.00 3.21
442 450 0.249868 CAGAAGTTCGGAGGCACACA 60.250 55.000 0.00 0.00 0.00 3.72
444 452 0.249868 CACAGAAGTTCGGAGGCACA 60.250 55.000 10.15 0.00 0.00 4.57
451 459 1.013596 TGCACAACACAGAAGTTCGG 58.986 50.000 1.08 1.08 0.00 4.30
452 460 2.823196 TTGCACAACACAGAAGTTCG 57.177 45.000 0.00 0.00 0.00 3.95
453 461 3.853671 CAGTTTGCACAACACAGAAGTTC 59.146 43.478 12.28 0.00 0.00 3.01
458 466 0.098552 CGCAGTTTGCACAACACAGA 59.901 50.000 12.28 0.00 45.36 3.41
459 467 0.866906 CCGCAGTTTGCACAACACAG 60.867 55.000 12.28 5.22 45.36 3.66
460 468 1.138459 CCGCAGTTTGCACAACACA 59.862 52.632 12.28 0.00 45.36 3.72
461 469 2.230264 GCCGCAGTTTGCACAACAC 61.230 57.895 12.28 5.26 45.36 3.32
463 471 0.805711 AAAGCCGCAGTTTGCACAAC 60.806 50.000 1.69 0.00 45.36 3.32
465 473 0.805322 CAAAAGCCGCAGTTTGCACA 60.805 50.000 6.61 0.00 45.36 4.57
468 476 1.215014 GGTCAAAAGCCGCAGTTTGC 61.215 55.000 12.44 8.86 40.69 3.68
469 477 0.934436 CGGTCAAAAGCCGCAGTTTG 60.934 55.000 11.46 11.46 42.82 2.93
470 478 1.358759 CGGTCAAAAGCCGCAGTTT 59.641 52.632 0.00 0.00 42.82 2.66
495 503 0.785979 CAAGCGTACCACGTAACCAC 59.214 55.000 0.26 0.00 44.73 4.16
496 504 0.388659 ACAAGCGTACCACGTAACCA 59.611 50.000 0.26 0.00 44.73 3.67
497 505 0.785979 CACAAGCGTACCACGTAACC 59.214 55.000 0.26 0.00 44.73 2.85
499 507 2.222007 AACACAAGCGTACCACGTAA 57.778 45.000 0.26 0.00 44.73 3.18
501 509 0.653636 CAAACACAAGCGTACCACGT 59.346 50.000 0.26 0.00 44.73 4.49
502 510 0.041663 CCAAACACAAGCGTACCACG 60.042 55.000 0.00 0.00 45.88 4.94
503 511 1.003223 GACCAAACACAAGCGTACCAC 60.003 52.381 0.00 0.00 0.00 4.16
505 513 1.263217 CAGACCAAACACAAGCGTACC 59.737 52.381 0.00 0.00 0.00 3.34
507 515 2.159014 AGACAGACCAAACACAAGCGTA 60.159 45.455 0.00 0.00 0.00 4.42
508 516 1.014352 GACAGACCAAACACAAGCGT 58.986 50.000 0.00 0.00 0.00 5.07
509 517 1.299541 AGACAGACCAAACACAAGCG 58.700 50.000 0.00 0.00 0.00 4.68
510 518 3.467803 ACTAGACAGACCAAACACAAGC 58.532 45.455 0.00 0.00 0.00 4.01
511 519 5.844004 AGTACTAGACAGACCAAACACAAG 58.156 41.667 0.00 0.00 0.00 3.16
512 520 5.597182 AGAGTACTAGACAGACCAAACACAA 59.403 40.000 0.00 0.00 0.00 3.33
514 522 5.708877 AGAGTACTAGACAGACCAAACAC 57.291 43.478 0.00 0.00 0.00 3.32
517 525 4.940046 CGGTAGAGTACTAGACAGACCAAA 59.060 45.833 0.00 0.00 0.00 3.28
521 529 4.329528 CACACGGTAGAGTACTAGACAGAC 59.670 50.000 11.95 0.00 0.00 3.51
523 531 3.622163 CCACACGGTAGAGTACTAGACAG 59.378 52.174 0.00 0.11 0.00 3.51
527 535 2.641305 AGCCACACGGTAGAGTACTAG 58.359 52.381 0.00 0.00 33.28 2.57
529 537 1.920610 AAGCCACACGGTAGAGTACT 58.079 50.000 0.00 0.00 33.28 2.73
552 560 9.379791 AGAAAAGACATAAACCCGACTTTATAG 57.620 33.333 0.00 0.00 0.00 1.31
612 620 6.260714 TGAATTGGTGTATCGGATCTTGAATG 59.739 38.462 0.00 0.00 0.00 2.67
617 625 5.928976 TGATGAATTGGTGTATCGGATCTT 58.071 37.500 0.00 0.00 0.00 2.40
619 627 5.541845 TCTGATGAATTGGTGTATCGGATC 58.458 41.667 0.00 0.00 31.80 3.36
646 654 4.775253 CCTCCTAGAACCCTAGAATCATCC 59.225 50.000 0.00 0.00 44.00 3.51
658 666 3.983821 TCTCCTTCTTCCTCCTAGAACC 58.016 50.000 0.00 0.00 0.00 3.62
659 667 5.454966 AGATCTCCTTCTTCCTCCTAGAAC 58.545 45.833 0.00 0.00 0.00 3.01
660 668 5.742562 AGATCTCCTTCTTCCTCCTAGAA 57.257 43.478 0.00 0.00 0.00 2.10
661 669 5.742562 AAGATCTCCTTCTTCCTCCTAGA 57.257 43.478 0.00 0.00 29.99 2.43
662 670 7.237982 TGATAAGATCTCCTTCTTCCTCCTAG 58.762 42.308 0.00 0.00 37.20 3.02
663 671 7.168022 TGATAAGATCTCCTTCTTCCTCCTA 57.832 40.000 0.00 0.00 37.20 2.94
664 672 6.036926 TGATAAGATCTCCTTCTTCCTCCT 57.963 41.667 0.00 0.00 37.20 3.69
665 673 6.739331 TTGATAAGATCTCCTTCTTCCTCC 57.261 41.667 0.00 0.00 37.20 4.30
666 674 9.108284 CTTTTTGATAAGATCTCCTTCTTCCTC 57.892 37.037 0.00 0.00 37.20 3.71
667 675 8.052141 CCTTTTTGATAAGATCTCCTTCTTCCT 58.948 37.037 0.00 0.00 37.20 3.36
668 676 8.049721 TCCTTTTTGATAAGATCTCCTTCTTCC 58.950 37.037 0.00 0.00 37.20 3.46
669 677 9.108284 CTCCTTTTTGATAAGATCTCCTTCTTC 57.892 37.037 0.00 0.00 37.20 2.87
670 678 8.052141 CCTCCTTTTTGATAAGATCTCCTTCTT 58.948 37.037 0.00 0.00 39.28 2.52
671 679 7.404396 TCCTCCTTTTTGATAAGATCTCCTTCT 59.596 37.037 0.00 0.00 36.34 2.85
672 680 7.569240 TCCTCCTTTTTGATAAGATCTCCTTC 58.431 38.462 0.00 0.00 36.34 3.46
673 681 7.516450 TCCTCCTTTTTGATAAGATCTCCTT 57.484 36.000 0.00 0.00 38.87 3.36
674 682 7.404396 TCTTCCTCCTTTTTGATAAGATCTCCT 59.596 37.037 0.00 0.00 0.00 3.69
675 683 7.569240 TCTTCCTCCTTTTTGATAAGATCTCC 58.431 38.462 0.00 0.00 0.00 3.71
676 684 9.108284 CTTCTTCCTCCTTTTTGATAAGATCTC 57.892 37.037 0.00 0.00 0.00 2.75
677 685 8.052141 CCTTCTTCCTCCTTTTTGATAAGATCT 58.948 37.037 0.00 0.00 0.00 2.75
678 686 8.049721 TCCTTCTTCCTCCTTTTTGATAAGATC 58.950 37.037 0.00 0.00 0.00 2.75
679 687 7.933223 TCCTTCTTCCTCCTTTTTGATAAGAT 58.067 34.615 0.00 0.00 0.00 2.40
680 688 7.237679 TCTCCTTCTTCCTCCTTTTTGATAAGA 59.762 37.037 0.00 0.00 0.00 2.10
681 689 7.398024 TCTCCTTCTTCCTCCTTTTTGATAAG 58.602 38.462 0.00 0.00 0.00 1.73
682 690 7.237679 TCTCTCCTTCTTCCTCCTTTTTGATAA 59.762 37.037 0.00 0.00 0.00 1.75
683 691 6.730977 TCTCTCCTTCTTCCTCCTTTTTGATA 59.269 38.462 0.00 0.00 0.00 2.15
684 692 5.549619 TCTCTCCTTCTTCCTCCTTTTTGAT 59.450 40.000 0.00 0.00 0.00 2.57
685 693 4.907875 TCTCTCCTTCTTCCTCCTTTTTGA 59.092 41.667 0.00 0.00 0.00 2.69
686 694 5.234466 TCTCTCCTTCTTCCTCCTTTTTG 57.766 43.478 0.00 0.00 0.00 2.44
687 695 4.288366 CCTCTCTCCTTCTTCCTCCTTTTT 59.712 45.833 0.00 0.00 0.00 1.94
688 696 3.843619 CCTCTCTCCTTCTTCCTCCTTTT 59.156 47.826 0.00 0.00 0.00 2.27
689 697 3.449918 CCTCTCTCCTTCTTCCTCCTTT 58.550 50.000 0.00 0.00 0.00 3.11
690 698 2.892301 GCCTCTCTCCTTCTTCCTCCTT 60.892 54.545 0.00 0.00 0.00 3.36
691 699 1.342975 GCCTCTCTCCTTCTTCCTCCT 60.343 57.143 0.00 0.00 0.00 3.69
692 700 1.119684 GCCTCTCTCCTTCTTCCTCC 58.880 60.000 0.00 0.00 0.00 4.30
733 741 9.736023 GAACAGATATCTCTTTTCTCTTCTCTC 57.264 37.037 1.03 0.00 35.96 3.20
734 742 9.479549 AGAACAGATATCTCTTTTCTCTTCTCT 57.520 33.333 1.03 0.00 42.28 3.10
736 744 9.874205 CAAGAACAGATATCTCTTTTCTCTTCT 57.126 33.333 16.08 5.84 44.15 2.85
737 745 9.097257 CCAAGAACAGATATCTCTTTTCTCTTC 57.903 37.037 16.08 4.26 44.15 2.87
738 746 8.601546 ACCAAGAACAGATATCTCTTTTCTCTT 58.398 33.333 16.08 9.73 44.15 2.85
739 747 8.144862 ACCAAGAACAGATATCTCTTTTCTCT 57.855 34.615 16.08 5.56 44.15 3.10
742 750 6.237969 GCGACCAAGAACAGATATCTCTTTTC 60.238 42.308 1.03 6.24 38.11 2.29
752 760 0.250513 GGAGGCGACCAAGAACAGAT 59.749 55.000 0.00 0.00 0.00 2.90
753 761 0.832135 AGGAGGCGACCAAGAACAGA 60.832 55.000 6.55 0.00 0.00 3.41
764 772 3.011635 GCAGCTCTCAAGGAGGCGA 62.012 63.158 0.00 0.00 42.08 5.54
797 805 1.014044 ATGTACGCAACGGTCAGCAG 61.014 55.000 6.38 2.47 0.00 4.24
798 806 1.005512 ATGTACGCAACGGTCAGCA 60.006 52.632 6.38 0.00 0.00 4.41
816 824 4.659172 CACTCAAAGGCCGGCCCA 62.659 66.667 41.72 21.98 36.58 5.36
817 825 4.660938 ACACTCAAAGGCCGGCCC 62.661 66.667 41.72 23.87 36.58 5.80
818 826 3.365265 CACACTCAAAGGCCGGCC 61.365 66.667 39.29 39.29 0.00 6.13
819 827 2.594592 ACACACTCAAAGGCCGGC 60.595 61.111 21.18 21.18 0.00 6.13
820 828 2.908073 GCACACACTCAAAGGCCGG 61.908 63.158 0.00 0.00 0.00 6.13
821 829 2.639286 GCACACACTCAAAGGCCG 59.361 61.111 0.00 0.00 0.00 6.13
831 839 0.977395 AGGAAGGACTAGGCACACAC 59.023 55.000 0.00 0.00 0.00 3.82
911 1793 2.894126 CACCTCTAGACAAGTGGAGTGT 59.106 50.000 2.14 0.00 40.71 3.55
973 1893 6.821665 TCATTATTTTCTGGTAACTTCTCCCG 59.178 38.462 0.00 0.00 37.61 5.14
992 1912 3.582208 GTGCTCCTCCTCCATCTCATTAT 59.418 47.826 0.00 0.00 0.00 1.28
993 1913 2.968574 GTGCTCCTCCTCCATCTCATTA 59.031 50.000 0.00 0.00 0.00 1.90
1285 2205 0.804989 CAGCGAGTTGGGTTGAATCC 59.195 55.000 0.00 0.00 0.00 3.01
1286 2206 0.804989 CCAGCGAGTTGGGTTGAATC 59.195 55.000 0.00 0.00 34.46 2.52
1287 2207 0.110486 ACCAGCGAGTTGGGTTGAAT 59.890 50.000 10.63 0.00 42.76 2.57
1288 2208 0.817634 CACCAGCGAGTTGGGTTGAA 60.818 55.000 10.63 0.00 42.76 2.69
1289 2209 1.227823 CACCAGCGAGTTGGGTTGA 60.228 57.895 10.63 0.00 42.76 3.18
1290 2210 2.908073 GCACCAGCGAGTTGGGTTG 61.908 63.158 10.63 2.14 42.76 3.77
1291 2211 2.594592 GCACCAGCGAGTTGGGTT 60.595 61.111 10.63 0.00 42.76 4.11
1292 2212 3.832237 CTGCACCAGCGAGTTGGGT 62.832 63.158 10.63 0.00 46.23 4.51
1326 2246 2.048127 AGCGCTCGTTTCCTGTCC 60.048 61.111 2.64 0.00 0.00 4.02
1407 2327 2.267426 TCAGTTGTTCGGCATATGTCG 58.733 47.619 23.43 23.43 45.75 4.35
1408 2328 3.063997 CCTTCAGTTGTTCGGCATATGTC 59.936 47.826 4.29 0.00 0.00 3.06
1454 2374 5.855925 CGTCGGAATGAAATTGATTGAACAA 59.144 36.000 0.00 0.00 36.07 2.83
1551 2471 5.509716 TCCATTGATTGCAGAAGCTATTG 57.490 39.130 0.00 0.00 42.74 1.90
1689 2609 0.386476 CAACAAGGCAAAGCAGCTCA 59.614 50.000 0.00 0.00 34.17 4.26
1755 2675 7.672240 ACGAAGAGAAGTTCTTAAGGAATTCT 58.328 34.615 23.18 23.18 46.12 2.40
1811 2731 2.819984 AATGGAACCGGCAGCACGAT 62.820 55.000 0.00 0.00 35.47 3.73
1815 2735 1.675310 CTCAATGGAACCGGCAGCA 60.675 57.895 0.00 0.00 0.00 4.41
1894 2851 3.823281 ACTCTGGATGCTGATTCTCTG 57.177 47.619 0.00 0.00 0.00 3.35
1908 2865 2.213499 GACACTCAACCACAACTCTGG 58.787 52.381 0.00 0.00 37.33 3.86
1914 2871 1.525077 GCCCGACACTCAACCACAA 60.525 57.895 0.00 0.00 0.00 3.33
1929 2886 2.150051 CCATCAGGGTAGAGGGCCC 61.150 68.421 16.46 16.46 46.43 5.80
1931 2888 2.327325 TATCCATCAGGGTAGAGGGC 57.673 55.000 0.00 0.00 39.25 5.19
1932 2889 4.846367 TGAATTATCCATCAGGGTAGAGGG 59.154 45.833 0.00 0.00 40.71 4.30
1943 2900 8.313292 AGCTCATAGTCTTCTGAATTATCCATC 58.687 37.037 0.00 0.00 0.00 3.51
1945 2902 7.609097 AGCTCATAGTCTTCTGAATTATCCA 57.391 36.000 0.00 0.00 0.00 3.41
1958 2915 7.447238 GGTGATTCTAGAACTAGCTCATAGTCT 59.553 40.741 7.48 0.00 44.26 3.24
1992 2949 9.944376 TTGATCTACTACTCTTTTATTGTGCTT 57.056 29.630 0.00 0.00 0.00 3.91
2017 2974 8.834465 CAGCAGAAATTCATAAGTAGTAGCATT 58.166 33.333 0.00 0.00 0.00 3.56
2090 3048 3.242673 GCATCTATGAACTTGAGTGCAGC 60.243 47.826 0.00 0.00 36.94 5.25
2097 3055 3.937079 CACTGCAGCATCTATGAACTTGA 59.063 43.478 15.27 0.00 0.00 3.02
2110 3068 1.407258 GGGTTGTTAAACACTGCAGCA 59.593 47.619 15.27 0.00 36.71 4.41
2113 3071 3.701542 TGAATGGGTTGTTAAACACTGCA 59.298 39.130 0.00 0.00 40.62 4.41
2141 3099 5.966742 AAAAATTAGGACTCAAGCCTCAC 57.033 39.130 0.00 0.00 36.96 3.51
2176 3134 4.080638 TGGCAAAACCCAGAGATTTGTTTT 60.081 37.500 0.00 0.00 40.47 2.43
2177 3135 3.454082 TGGCAAAACCCAGAGATTTGTTT 59.546 39.130 0.00 0.00 36.63 2.83
2243 3201 9.394477 GTTTGAAGCGTACTTATTTCAAAATCT 57.606 29.630 17.43 0.00 45.56 2.40
2244 3202 9.176181 TGTTTGAAGCGTACTTATTTCAAAATC 57.824 29.630 17.43 11.23 45.56 2.17
2245 3203 8.964150 GTGTTTGAAGCGTACTTATTTCAAAAT 58.036 29.630 17.43 0.00 45.56 1.82
2246 3204 8.185505 AGTGTTTGAAGCGTACTTATTTCAAAA 58.814 29.630 17.43 10.33 45.56 2.44
2330 3291 5.072736 AGACCATCAAAGCATGGAGATGATA 59.927 40.000 7.74 0.00 45.79 2.15
2379 3344 4.654091 TTGGCTGTCTTTCTTCCAAAAG 57.346 40.909 0.00 0.00 37.55 2.27
2384 3350 2.287849 GCACTTTGGCTGTCTTTCTTCC 60.288 50.000 0.00 0.00 0.00 3.46
2396 3362 5.314923 TCAAATCTAAGATGCACTTTGGC 57.685 39.130 6.82 0.00 39.72 4.52
2429 3396 8.458573 TCAATGTAATGTACTGGTTGTTTTCT 57.541 30.769 0.00 0.00 0.00 2.52
2488 3455 3.976701 AATCTCCAACGGGCGGCAG 62.977 63.158 12.47 10.04 0.00 4.85
2499 3466 3.333029 TCAGTGCGATTTCAATCTCCA 57.667 42.857 0.00 0.00 33.24 3.86
2526 3501 2.557056 GCAGGTGTCCCTTTTCTTTACC 59.443 50.000 0.00 0.00 39.89 2.85
2778 3753 6.430616 TCTGTGCAAAGAATATGATGTGAACA 59.569 34.615 3.39 0.00 0.00 3.18
2792 3767 7.394077 TGAATTGGATTTCTATCTGTGCAAAGA 59.606 33.333 9.56 9.56 0.00 2.52
2853 3828 3.000727 CCCTACTCCACGCTTTGTAAAG 58.999 50.000 0.05 0.05 39.03 1.85
2866 3841 3.326836 GCAAGAGCATATCCCTACTCC 57.673 52.381 0.00 0.00 41.58 3.85
2969 3948 3.976793 ATGTTGTCTTGAAGCTGTGTG 57.023 42.857 0.00 0.00 0.00 3.82
2995 3974 2.163818 TCGTCCTCAACAACCACATC 57.836 50.000 0.00 0.00 0.00 3.06
3012 3991 6.256539 TCTCTAGTGCAGCATAAAATTCTTCG 59.743 38.462 0.00 0.00 0.00 3.79
3039 4018 2.851195 AGCGTGAAAGTTTCATCTGGT 58.149 42.857 20.72 15.55 42.47 4.00
3045 4024 3.787785 TGTCTGTAGCGTGAAAGTTTCA 58.212 40.909 14.35 14.35 37.33 2.69
3068 4047 6.757010 AGACTATAATTGTGTAAGTTGCTCCG 59.243 38.462 0.00 0.00 0.00 4.63
3090 4069 6.574350 TGTAAGAAATCTAGCCAGCTAAGAC 58.426 40.000 0.34 0.00 0.00 3.01
3110 4089 7.438160 GCACTCATATGTTACTGCACTATGTAA 59.562 37.037 1.90 0.00 0.00 2.41
3113 4092 5.754890 TGCACTCATATGTTACTGCACTATG 59.245 40.000 1.90 0.00 0.00 2.23
3130 4109 6.983906 TCTCTTGATATAATCCTGCACTCA 57.016 37.500 0.00 0.00 0.00 3.41
3164 4143 4.207165 GCAACTGGGAATCAATAAGCCTA 58.793 43.478 0.00 0.00 0.00 3.93
3191 4170 6.312180 TCATCTCTTGATTCATTCGTGAAGTG 59.688 38.462 0.00 0.00 0.00 3.16
3195 4174 5.723295 TGTCATCTCTTGATTCATTCGTGA 58.277 37.500 0.00 0.00 36.54 4.35
3251 4234 9.978044 CTTCTTCATGTATATGTCATCTCTTGA 57.022 33.333 0.00 0.00 35.73 3.02
3252 4235 9.205719 CCTTCTTCATGTATATGTCATCTCTTG 57.794 37.037 0.00 0.00 35.73 3.02
3253 4236 8.932610 ACCTTCTTCATGTATATGTCATCTCTT 58.067 33.333 0.00 0.00 35.73 2.85
3254 4237 8.366401 CACCTTCTTCATGTATATGTCATCTCT 58.634 37.037 0.00 0.00 35.73 3.10
3257 4240 7.928167 TGACACCTTCTTCATGTATATGTCATC 59.072 37.037 0.00 0.00 39.08 2.92
3258 4241 7.795047 TGACACCTTCTTCATGTATATGTCAT 58.205 34.615 0.00 0.00 39.08 3.06
3262 4245 6.820335 TCCTGACACCTTCTTCATGTATATG 58.180 40.000 0.00 0.00 35.57 1.78
3264 4247 7.437713 AATCCTGACACCTTCTTCATGTATA 57.562 36.000 0.00 0.00 0.00 1.47
3266 4249 5.762179 AATCCTGACACCTTCTTCATGTA 57.238 39.130 0.00 0.00 0.00 2.29
3267 4250 4.647564 AATCCTGACACCTTCTTCATGT 57.352 40.909 0.00 0.00 0.00 3.21
3268 4251 5.005740 TCAAATCCTGACACCTTCTTCATG 58.994 41.667 0.00 0.00 0.00 3.07
3269 4252 5.246981 TCAAATCCTGACACCTTCTTCAT 57.753 39.130 0.00 0.00 0.00 2.57
3270 4253 4.705110 TCAAATCCTGACACCTTCTTCA 57.295 40.909 0.00 0.00 0.00 3.02
3271 4254 7.687941 TTTATCAAATCCTGACACCTTCTTC 57.312 36.000 0.00 0.00 36.69 2.87
3272 4255 8.477419 TTTTTATCAAATCCTGACACCTTCTT 57.523 30.769 0.00 0.00 36.69 2.52
3340 4323 6.463360 TCCTTGTTCTGAATAAAAATTGGCC 58.537 36.000 0.00 0.00 0.00 5.36
3438 4422 7.130681 TGTAAACCCTTCCAAAATTGTGATT 57.869 32.000 0.00 0.00 0.00 2.57
3501 4485 8.201464 TGAGACAACTTGACTACAAATCTACAA 58.799 33.333 0.00 0.00 35.49 2.41
3507 4491 5.106948 CGCATGAGACAACTTGACTACAAAT 60.107 40.000 0.00 0.00 35.49 2.32
3508 4492 4.211164 CGCATGAGACAACTTGACTACAAA 59.789 41.667 0.00 0.00 35.49 2.83
3509 4493 3.740832 CGCATGAGACAACTTGACTACAA 59.259 43.478 0.00 0.00 34.65 2.41
3510 4494 3.005367 TCGCATGAGACAACTTGACTACA 59.995 43.478 0.00 0.00 0.00 2.74
3511 4495 3.575630 TCGCATGAGACAACTTGACTAC 58.424 45.455 0.00 0.00 0.00 2.73
3512 4496 3.934457 TCGCATGAGACAACTTGACTA 57.066 42.857 0.00 0.00 0.00 2.59
3513 4497 2.820059 TCGCATGAGACAACTTGACT 57.180 45.000 0.00 0.00 0.00 3.41
3514 4498 3.878086 TTTCGCATGAGACAACTTGAC 57.122 42.857 0.00 0.00 0.00 3.18
3515 4499 5.437289 AAATTTCGCATGAGACAACTTGA 57.563 34.783 0.00 0.00 0.00 3.02
3525 4509 1.067000 CCTGGCCAAAATTTCGCATGA 60.067 47.619 7.01 0.00 0.00 3.07
3542 4526 5.651387 TGAGAAATGACTAGAGACACCTG 57.349 43.478 0.00 0.00 0.00 4.00
3578 4562 6.712547 AGCTCCAAATAAGATGGCTGTATTAC 59.287 38.462 0.00 0.00 37.88 1.89
3581 4565 5.316158 AGCTCCAAATAAGATGGCTGTAT 57.684 39.130 0.00 0.00 37.88 2.29
3582 4566 4.778213 AGCTCCAAATAAGATGGCTGTA 57.222 40.909 0.00 0.00 37.88 2.74
3583 4567 3.659183 AGCTCCAAATAAGATGGCTGT 57.341 42.857 0.00 0.00 37.88 4.40
3585 4569 4.080129 TCTGAAGCTCCAAATAAGATGGCT 60.080 41.667 0.00 0.00 37.88 4.75
3586 4570 4.202441 TCTGAAGCTCCAAATAAGATGGC 58.798 43.478 0.00 0.00 37.88 4.40
3587 4571 4.820716 CCTCTGAAGCTCCAAATAAGATGG 59.179 45.833 0.00 0.00 39.41 3.51
3588 4572 4.275443 GCCTCTGAAGCTCCAAATAAGATG 59.725 45.833 0.00 0.00 0.00 2.90
3658 4656 1.689273 GTAATCCTCCACGCCTCAGAT 59.311 52.381 0.00 0.00 0.00 2.90
3687 4687 5.836347 TGACGATTCAAGATCTCTACATGG 58.164 41.667 0.00 0.00 0.00 3.66
3688 4688 6.733145 TCTGACGATTCAAGATCTCTACATG 58.267 40.000 0.00 0.00 0.00 3.21
3699 4699 3.931468 AGCATCTGTTCTGACGATTCAAG 59.069 43.478 0.00 0.00 0.00 3.02
3738 4741 5.053145 GCACACACCAATGAAAATTTACCA 58.947 37.500 0.00 0.00 0.00 3.25
3742 4745 6.757237 TCTATGCACACACCAATGAAAATTT 58.243 32.000 0.00 0.00 0.00 1.82
3745 4748 5.069318 TCTCTATGCACACACCAATGAAAA 58.931 37.500 0.00 0.00 0.00 2.29
3761 4764 6.279882 GTTCCAGGACTCTTCAATCTCTATG 58.720 44.000 0.00 0.00 0.00 2.23
3774 4777 3.745797 GCATCCATAAGGTTCCAGGACTC 60.746 52.174 0.00 0.00 35.89 3.36
3780 4783 3.136443 CCTACAGCATCCATAAGGTTCCA 59.864 47.826 0.00 0.00 35.89 3.53
3784 4787 4.719773 TGTTACCTACAGCATCCATAAGGT 59.280 41.667 0.00 0.00 40.38 3.50
3798 4801 7.172532 TCAACATTTGTCATCTGTGTTACCTAC 59.827 37.037 0.00 0.00 32.27 3.18
3802 4805 7.269084 CGATTCAACATTTGTCATCTGTGTTAC 59.731 37.037 0.00 0.00 32.27 2.50
3806 4809 5.791974 GTCGATTCAACATTTGTCATCTGTG 59.208 40.000 0.00 0.00 0.00 3.66
3808 4811 6.174451 AGTCGATTCAACATTTGTCATCTG 57.826 37.500 0.00 0.00 0.00 2.90
3894 4920 5.339695 GGGGTGATCATCCTAAAGGTTTACA 60.340 44.000 24.26 0.00 36.34 2.41
3895 4921 5.131067 GGGGTGATCATCCTAAAGGTTTAC 58.869 45.833 24.26 0.00 36.34 2.01
3896 4922 4.791334 TGGGGTGATCATCCTAAAGGTTTA 59.209 41.667 24.26 0.00 36.34 2.01
3899 4925 2.858644 TGGGGTGATCATCCTAAAGGT 58.141 47.619 24.26 0.00 36.34 3.50
3901 4927 4.510167 ACTTGGGGTGATCATCCTAAAG 57.490 45.455 26.49 26.49 31.37 1.85
3940 4966 6.716628 TGGAAGTGAGTTCAGATTGCTATTTT 59.283 34.615 2.06 0.00 36.82 1.82
3941 4967 6.240894 TGGAAGTGAGTTCAGATTGCTATTT 58.759 36.000 2.06 0.00 36.82 1.40
3942 4968 5.809001 TGGAAGTGAGTTCAGATTGCTATT 58.191 37.500 2.06 0.00 36.82 1.73
3951 4977 4.095483 GGCACATTATGGAAGTGAGTTCAG 59.905 45.833 2.06 0.00 36.82 3.02
3956 4982 6.769822 AGATAAAGGCACATTATGGAAGTGAG 59.230 38.462 0.00 0.00 32.01 3.51
4010 5037 8.747538 ACTCCCCATTTTGATACTAATACAAC 57.252 34.615 0.00 0.00 0.00 3.32
4016 5043 6.126594 CCTGGTACTCCCCATTTTGATACTAA 60.127 42.308 0.00 0.00 33.00 2.24
4033 5063 1.542187 GGCCGTCAGTTCCTGGTACT 61.542 60.000 0.00 0.00 31.51 2.73
4049 5079 4.501400 GGTCAATGTTTTATAGCCATGGCC 60.501 45.833 33.14 16.18 43.17 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.