Multiple sequence alignment - TraesCS4A01G187500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G187500 chr4A 100.000 7684 0 0 1 7684 466645033 466637350 0.000000e+00 14190.0
1 TraesCS4A01G187500 chr4A 89.054 539 54 2 1 534 352639808 352640346 0.000000e+00 664.0
2 TraesCS4A01G187500 chr4A 100.000 51 0 0 2876 2926 466642123 466642073 2.280000e-15 95.3
3 TraesCS4A01G187500 chr4A 100.000 51 0 0 2911 2961 466642158 466642108 2.280000e-15 95.3
4 TraesCS4A01G187500 chr4B 92.928 4836 210 44 2911 7684 171626365 171621600 0.000000e+00 6914.0
5 TraesCS4A01G187500 chr4B 96.142 985 35 3 1944 2926 171627298 171626315 0.000000e+00 1605.0
6 TraesCS4A01G187500 chr4B 83.755 1582 187 35 4063 5617 619447098 619448636 0.000000e+00 1434.0
7 TraesCS4A01G187500 chr4B 85.242 1179 139 21 5621 6784 619448843 619450001 0.000000e+00 1181.0
8 TraesCS4A01G187500 chr4B 85.529 1154 74 39 674 1779 171628702 171627594 0.000000e+00 1120.0
9 TraesCS4A01G187500 chr4B 83.629 788 108 18 3089 3863 619445723 619446502 0.000000e+00 721.0
10 TraesCS4A01G187500 chr4B 84.725 563 49 25 2527 3088 619445068 619445594 5.280000e-146 529.0
11 TraesCS4A01G187500 chr4B 80.000 460 34 27 744 1201 619443499 619443902 3.510000e-73 287.0
12 TraesCS4A01G187500 chr4B 79.261 352 64 7 7071 7415 619473351 619473700 3.580000e-58 237.0
13 TraesCS4A01G187500 chr4B 86.667 150 16 3 1797 1945 171627603 171627457 6.170000e-36 163.0
14 TraesCS4A01G187500 chr4D 95.277 3388 96 27 2946 6301 110077583 110080938 0.000000e+00 5312.0
15 TraesCS4A01G187500 chr4D 93.892 1408 64 8 6298 7684 110081030 110082436 0.000000e+00 2104.0
16 TraesCS4A01G187500 chr4D 92.726 1361 54 15 1539 2891 110076275 110077598 0.000000e+00 1923.0
17 TraesCS4A01G187500 chr4D 84.124 1581 180 34 4063 5617 485619547 485621082 0.000000e+00 1463.0
18 TraesCS4A01G187500 chr4D 85.775 1167 135 20 5615 6770 485621282 485622428 0.000000e+00 1206.0
19 TraesCS4A01G187500 chr4D 82.805 977 139 23 3085 4050 485618540 485619498 0.000000e+00 846.0
20 TraesCS4A01G187500 chr4D 83.978 905 52 43 674 1536 110075330 110076183 0.000000e+00 782.0
21 TraesCS4A01G187500 chr4D 84.353 556 46 24 2537 3088 485617901 485618419 2.470000e-139 507.0
22 TraesCS4A01G187500 chr4D 79.834 481 35 37 724 1201 485612618 485613039 2.100000e-75 294.0
23 TraesCS4A01G187500 chr4D 84.795 171 21 3 7085 7252 485646895 485647063 4.770000e-37 167.0
24 TraesCS4A01G187500 chr4D 81.765 170 20 6 1557 1725 485613203 485613362 1.740000e-26 132.0
25 TraesCS4A01G187500 chr4D 80.460 174 22 4 1826 1997 485617319 485617482 1.050000e-23 122.0
26 TraesCS4A01G187500 chr5A 83.588 2096 242 50 4063 6129 666349721 666351743 0.000000e+00 1871.0
27 TraesCS4A01G187500 chr5A 81.809 962 123 32 3091 4040 666348745 666349666 0.000000e+00 760.0
28 TraesCS4A01G187500 chr5A 83.456 677 73 29 6122 6784 666351965 666352616 1.850000e-165 593.0
29 TraesCS4A01G187500 chr5A 85.231 562 45 26 2522 3079 666348175 666348702 1.890000e-150 544.0
30 TraesCS4A01G187500 chr5A 83.673 294 22 14 909 1201 666346795 666347063 3.560000e-63 254.0
31 TraesCS4A01G187500 chr5A 90.000 100 10 0 1090 1189 312246401 312246302 6.260000e-26 130.0
32 TraesCS4A01G187500 chr5A 79.651 172 25 3 1826 1997 666347599 666347760 1.750000e-21 115.0
33 TraesCS4A01G187500 chr5A 85.849 106 10 4 724 827 666346660 666346762 2.930000e-19 108.0
34 TraesCS4A01G187500 chr3D 88.868 539 55 2 1 534 267263323 267262785 0.000000e+00 658.0
35 TraesCS4A01G187500 chr3D 89.054 539 45 4 1 534 419494873 419494344 0.000000e+00 656.0
36 TraesCS4A01G187500 chr3D 88.497 539 54 3 1 534 360594022 360594557 0.000000e+00 645.0
37 TraesCS4A01G187500 chr3D 88.312 539 58 3 1 534 31976122 31976660 6.500000e-180 641.0
38 TraesCS4A01G187500 chr3A 88.561 542 54 3 1 534 314611425 314610884 0.000000e+00 651.0
39 TraesCS4A01G187500 chr3A 100.000 29 0 0 638 666 178121927 178121955 4.000000e-03 54.7
40 TraesCS4A01G187500 chr3A 100.000 29 0 0 638 666 595774296 595774324 4.000000e-03 54.7
41 TraesCS4A01G187500 chr3B 88.312 539 58 2 1 534 259894719 259894181 6.500000e-180 641.0
42 TraesCS4A01G187500 chr2A 88.126 539 59 2 1 534 235313100 235313638 3.020000e-178 636.0
43 TraesCS4A01G187500 chr7D 87.941 539 60 2 1 534 376700626 376701164 1.410000e-176 630.0
44 TraesCS4A01G187500 chrUn 76.981 530 83 23 2343 2860 206992431 206992933 4.570000e-67 267.0
45 TraesCS4A01G187500 chrUn 76.648 531 84 25 2343 2860 237130130 237129627 2.750000e-64 257.0
46 TraesCS4A01G187500 chrUn 78.571 238 35 9 3271 3501 206993950 206994178 8.040000e-30 143.0
47 TraesCS4A01G187500 chr5D 90.000 100 10 0 1090 1189 242021004 242020905 6.260000e-26 130.0
48 TraesCS4A01G187500 chr5D 100.000 28 0 0 634 661 285837289 285837262 1.400000e-02 52.8
49 TraesCS4A01G187500 chr2B 82.759 87 14 1 542 628 475743356 475743271 8.270000e-10 76.8
50 TraesCS4A01G187500 chr1B 96.970 33 0 1 633 665 11124102 11124071 4.000000e-03 54.7
51 TraesCS4A01G187500 chr6D 100.000 28 0 0 639 666 266954872 266954845 1.400000e-02 52.8
52 TraesCS4A01G187500 chr6B 100.000 28 0 0 638 665 637490599 637490572 1.400000e-02 52.8
53 TraesCS4A01G187500 chr1D 100.000 28 0 0 638 665 50209917 50209890 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G187500 chr4A 466637350 466645033 7683 True 4793.533333 14190 100.000000 1 7684 3 chr4A.!!$R1 7683
1 TraesCS4A01G187500 chr4A 352639808 352640346 538 False 664.000000 664 89.054000 1 534 1 chr4A.!!$F1 533
2 TraesCS4A01G187500 chr4B 171621600 171628702 7102 True 2450.500000 6914 90.316500 674 7684 4 chr4B.!!$R1 7010
3 TraesCS4A01G187500 chr4B 619443499 619450001 6502 False 830.400000 1434 83.470200 744 6784 5 chr4B.!!$F2 6040
4 TraesCS4A01G187500 chr4D 110075330 110082436 7106 False 2530.250000 5312 91.468250 674 7684 4 chr4D.!!$F2 7010
5 TraesCS4A01G187500 chr4D 485612618 485622428 9810 False 652.857143 1463 82.730857 724 6770 7 chr4D.!!$F3 6046
6 TraesCS4A01G187500 chr5A 666346660 666352616 5956 False 606.428571 1871 83.322429 724 6784 7 chr5A.!!$F1 6060
7 TraesCS4A01G187500 chr3D 267262785 267263323 538 True 658.000000 658 88.868000 1 534 1 chr3D.!!$R1 533
8 TraesCS4A01G187500 chr3D 419494344 419494873 529 True 656.000000 656 89.054000 1 534 1 chr3D.!!$R2 533
9 TraesCS4A01G187500 chr3D 360594022 360594557 535 False 645.000000 645 88.497000 1 534 1 chr3D.!!$F2 533
10 TraesCS4A01G187500 chr3D 31976122 31976660 538 False 641.000000 641 88.312000 1 534 1 chr3D.!!$F1 533
11 TraesCS4A01G187500 chr3A 314610884 314611425 541 True 651.000000 651 88.561000 1 534 1 chr3A.!!$R1 533
12 TraesCS4A01G187500 chr3B 259894181 259894719 538 True 641.000000 641 88.312000 1 534 1 chr3B.!!$R1 533
13 TraesCS4A01G187500 chr2A 235313100 235313638 538 False 636.000000 636 88.126000 1 534 1 chr2A.!!$F1 533
14 TraesCS4A01G187500 chr7D 376700626 376701164 538 False 630.000000 630 87.941000 1 534 1 chr7D.!!$F1 533
15 TraesCS4A01G187500 chrUn 237129627 237130130 503 True 257.000000 257 76.648000 2343 2860 1 chrUn.!!$R1 517
16 TraesCS4A01G187500 chrUn 206992431 206994178 1747 False 205.000000 267 77.776000 2343 3501 2 chrUn.!!$F1 1158

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 853 0.099613 CGACAGAGACGCACTGCTAT 59.900 55.000 0.00 0.0 38.74 2.97 F
1250 1335 0.095417 GATTCACTCGTTTCAGCGGC 59.905 55.000 0.00 0.0 0.00 6.53 F
2258 6624 0.389948 AACCGCCAAGATCGACACTC 60.390 55.000 0.00 0.0 0.00 3.51 F
3134 7704 1.449070 GGTACAGGTAAGCACGGGC 60.449 63.158 0.00 0.0 41.61 6.13 F
3454 8686 0.445436 CACTGATCGCCTTTGCTGTC 59.555 55.000 0.00 0.0 34.43 3.51 F
3986 9593 3.355378 TGTATCAATTGTTGAGCCCCTG 58.645 45.455 5.13 0.0 43.98 4.45 F
5566 11261 4.389374 AGTGTCAACAATTCCATCTCGTT 58.611 39.130 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2224 6589 1.730612 GCGGTTACCAGTTTGTAGAGC 59.269 52.381 1.13 0.00 0.00 4.09 R
3134 7704 1.004745 ACAACAAGACCTATGCCCCAG 59.995 52.381 0.00 0.00 0.00 4.45 R
3267 8485 1.042229 ATTGCTTTGCAGGCTGACAA 58.958 45.000 20.86 18.32 40.61 3.18 R
4121 9764 1.065564 GGGAGCAGCTCTTGAATCACT 60.066 52.381 21.99 0.00 0.00 3.41 R
5032 10720 1.376683 CAGCCCGAAATGAACCCGA 60.377 57.895 0.00 0.00 0.00 5.14 R
5962 11873 2.957402 TGAAGAGGGACATTGCAGTT 57.043 45.000 0.00 0.00 0.00 3.16 R
6789 13043 0.399454 ACTGGCTCTCTGCACAACAT 59.601 50.000 0.00 0.00 45.15 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 2.932614 AGATTGAACTTTGGCGATCTCG 59.067 45.455 0.00 0.00 43.27 4.04
135 139 5.241403 TCATTAAGAACAAGAGGCTGGAA 57.759 39.130 0.00 0.00 0.00 3.53
137 141 6.068010 TCATTAAGAACAAGAGGCTGGAAAA 58.932 36.000 0.00 0.00 0.00 2.29
193 202 4.603535 GCCACACCCTGCCAAGGT 62.604 66.667 0.00 0.00 42.74 3.50
196 205 2.113139 ACACCCTGCCAAGGTTCG 59.887 61.111 0.00 0.00 42.74 3.95
202 211 2.031919 TGCCAAGGTTCGATGCGT 59.968 55.556 0.00 0.00 0.00 5.24
268 277 2.613133 ACGAGAGTCACTAATAGGCGTC 59.387 50.000 0.00 0.00 44.19 5.19
417 432 1.434188 TGTTGGAAGCAGAGGAGGAA 58.566 50.000 0.00 0.00 0.00 3.36
439 454 3.511934 AGAACTTCAGGTTAGCGATGTCT 59.488 43.478 0.00 0.00 38.41 3.41
446 461 1.473257 GGTTAGCGATGTCTGCATCCA 60.473 52.381 0.00 0.00 46.56 3.41
454 469 0.401356 TGTCTGCATCCAAGCCTTCA 59.599 50.000 0.00 0.00 0.00 3.02
491 509 0.529773 GTCGGCGTATTGGAGCATGA 60.530 55.000 6.85 0.00 34.54 3.07
493 511 1.013596 CGGCGTATTGGAGCATGAAA 58.986 50.000 0.00 0.00 34.54 2.69
558 576 6.521151 AAAACCTGATCAGATCAACAATCC 57.479 37.500 24.62 0.00 39.11 3.01
559 577 4.849813 ACCTGATCAGATCAACAATCCA 57.150 40.909 24.62 0.00 39.11 3.41
560 578 4.521146 ACCTGATCAGATCAACAATCCAC 58.479 43.478 24.62 0.00 39.11 4.02
561 579 4.019051 ACCTGATCAGATCAACAATCCACA 60.019 41.667 24.62 0.00 39.11 4.17
562 580 4.945543 CCTGATCAGATCAACAATCCACAA 59.054 41.667 24.62 0.00 39.11 3.33
563 581 5.416639 CCTGATCAGATCAACAATCCACAAA 59.583 40.000 24.62 0.00 39.11 2.83
564 582 6.258230 TGATCAGATCAACAATCCACAAAC 57.742 37.500 10.93 0.00 36.11 2.93
565 583 6.005823 TGATCAGATCAACAATCCACAAACT 58.994 36.000 10.93 0.00 36.11 2.66
566 584 7.167535 TGATCAGATCAACAATCCACAAACTA 58.832 34.615 10.93 0.00 36.11 2.24
567 585 6.801539 TCAGATCAACAATCCACAAACTAC 57.198 37.500 0.00 0.00 34.67 2.73
568 586 6.295249 TCAGATCAACAATCCACAAACTACA 58.705 36.000 0.00 0.00 34.67 2.74
569 587 6.770303 TCAGATCAACAATCCACAAACTACAA 59.230 34.615 0.00 0.00 34.67 2.41
570 588 6.857964 CAGATCAACAATCCACAAACTACAAC 59.142 38.462 0.00 0.00 34.67 3.32
571 589 5.163302 TCAACAATCCACAAACTACAACG 57.837 39.130 0.00 0.00 0.00 4.10
572 590 4.035792 TCAACAATCCACAAACTACAACGG 59.964 41.667 0.00 0.00 0.00 4.44
573 591 3.547746 ACAATCCACAAACTACAACGGT 58.452 40.909 0.00 0.00 0.00 4.83
574 592 4.706035 ACAATCCACAAACTACAACGGTA 58.294 39.130 0.00 0.00 0.00 4.02
575 593 5.124645 ACAATCCACAAACTACAACGGTAA 58.875 37.500 0.00 0.00 0.00 2.85
576 594 5.007921 ACAATCCACAAACTACAACGGTAAC 59.992 40.000 0.00 0.00 0.00 2.50
577 595 3.465871 TCCACAAACTACAACGGTAACC 58.534 45.455 0.00 0.00 0.00 2.85
578 596 3.118482 TCCACAAACTACAACGGTAACCA 60.118 43.478 0.00 0.00 0.00 3.67
579 597 3.816523 CCACAAACTACAACGGTAACCAT 59.183 43.478 0.00 0.00 0.00 3.55
580 598 4.996122 CCACAAACTACAACGGTAACCATA 59.004 41.667 0.00 0.00 0.00 2.74
581 599 5.644636 CCACAAACTACAACGGTAACCATAT 59.355 40.000 0.00 0.00 0.00 1.78
582 600 6.183360 CCACAAACTACAACGGTAACCATATC 60.183 42.308 0.00 0.00 0.00 1.63
583 601 5.876460 ACAAACTACAACGGTAACCATATCC 59.124 40.000 0.00 0.00 0.00 2.59
585 603 1.944032 ACAACGGTAACCATATCCGC 58.056 50.000 2.72 0.00 46.92 5.54
586 604 1.207570 ACAACGGTAACCATATCCGCA 59.792 47.619 2.72 0.00 46.92 5.69
587 605 1.595794 CAACGGTAACCATATCCGCAC 59.404 52.381 2.72 0.00 46.92 5.34
588 606 0.105408 ACGGTAACCATATCCGCACC 59.895 55.000 2.72 0.00 46.92 5.01
589 607 0.105224 CGGTAACCATATCCGCACCA 59.895 55.000 0.00 0.00 37.90 4.17
590 608 1.473610 CGGTAACCATATCCGCACCAA 60.474 52.381 0.00 0.00 37.90 3.67
591 609 1.944709 GGTAACCATATCCGCACCAAC 59.055 52.381 0.00 0.00 0.00 3.77
592 610 2.634600 GTAACCATATCCGCACCAACA 58.365 47.619 0.00 0.00 0.00 3.33
593 611 2.208132 AACCATATCCGCACCAACAA 57.792 45.000 0.00 0.00 0.00 2.83
594 612 2.435372 ACCATATCCGCACCAACAAT 57.565 45.000 0.00 0.00 0.00 2.71
595 613 2.297701 ACCATATCCGCACCAACAATC 58.702 47.619 0.00 0.00 0.00 2.67
596 614 2.092429 ACCATATCCGCACCAACAATCT 60.092 45.455 0.00 0.00 0.00 2.40
597 615 2.549754 CCATATCCGCACCAACAATCTC 59.450 50.000 0.00 0.00 0.00 2.75
598 616 3.205338 CATATCCGCACCAACAATCTCA 58.795 45.455 0.00 0.00 0.00 3.27
599 617 2.425143 ATCCGCACCAACAATCTCAT 57.575 45.000 0.00 0.00 0.00 2.90
600 618 1.452110 TCCGCACCAACAATCTCATG 58.548 50.000 0.00 0.00 0.00 3.07
601 619 1.003003 TCCGCACCAACAATCTCATGA 59.997 47.619 0.00 0.00 0.00 3.07
602 620 1.131126 CCGCACCAACAATCTCATGAC 59.869 52.381 0.00 0.00 0.00 3.06
603 621 1.805943 CGCACCAACAATCTCATGACA 59.194 47.619 0.00 0.00 0.00 3.58
604 622 2.421073 CGCACCAACAATCTCATGACAT 59.579 45.455 0.00 0.00 0.00 3.06
605 623 3.486375 CGCACCAACAATCTCATGACATC 60.486 47.826 0.00 0.00 0.00 3.06
606 624 3.441222 GCACCAACAATCTCATGACATCA 59.559 43.478 0.00 0.00 0.00 3.07
607 625 4.673580 GCACCAACAATCTCATGACATCAC 60.674 45.833 0.00 0.00 0.00 3.06
608 626 4.456566 CACCAACAATCTCATGACATCACA 59.543 41.667 0.00 0.00 0.00 3.58
609 627 5.124936 CACCAACAATCTCATGACATCACAT 59.875 40.000 0.00 0.00 0.00 3.21
610 628 5.124936 ACCAACAATCTCATGACATCACATG 59.875 40.000 0.00 0.00 46.01 3.21
625 643 4.849813 TCACATGAATGATGAGGGTCTT 57.150 40.909 0.00 0.00 35.80 3.01
626 644 4.774124 TCACATGAATGATGAGGGTCTTC 58.226 43.478 0.00 0.00 35.80 2.87
627 645 4.225717 TCACATGAATGATGAGGGTCTTCA 59.774 41.667 0.00 0.00 35.45 3.02
628 646 5.104235 TCACATGAATGATGAGGGTCTTCAT 60.104 40.000 0.00 0.00 41.30 2.57
629 647 6.100134 TCACATGAATGATGAGGGTCTTCATA 59.900 38.462 0.00 0.00 39.44 2.15
630 648 6.204301 CACATGAATGATGAGGGTCTTCATAC 59.796 42.308 0.00 0.00 39.44 2.39
631 649 6.100859 ACATGAATGATGAGGGTCTTCATACT 59.899 38.462 0.00 0.00 39.44 2.12
632 650 7.290948 ACATGAATGATGAGGGTCTTCATACTA 59.709 37.037 0.00 0.00 39.44 1.82
633 651 7.055667 TGAATGATGAGGGTCTTCATACTAC 57.944 40.000 5.91 1.54 39.44 2.73
634 652 6.841229 TGAATGATGAGGGTCTTCATACTACT 59.159 38.462 5.91 0.00 39.44 2.57
635 653 8.004801 TGAATGATGAGGGTCTTCATACTACTA 58.995 37.037 5.91 0.00 39.44 1.82
636 654 7.768807 ATGATGAGGGTCTTCATACTACTAC 57.231 40.000 4.04 0.00 38.84 2.73
637 655 6.669631 TGATGAGGGTCTTCATACTACTACA 58.330 40.000 0.00 0.00 37.90 2.74
638 656 7.298374 TGATGAGGGTCTTCATACTACTACAT 58.702 38.462 0.00 0.00 37.90 2.29
639 657 8.445588 TGATGAGGGTCTTCATACTACTACATA 58.554 37.037 0.00 0.00 37.90 2.29
640 658 8.638629 ATGAGGGTCTTCATACTACTACATAC 57.361 38.462 0.00 0.00 36.08 2.39
641 659 7.813331 TGAGGGTCTTCATACTACTACATACT 58.187 38.462 0.00 0.00 0.00 2.12
642 660 7.937942 TGAGGGTCTTCATACTACTACATACTC 59.062 40.741 0.00 0.00 0.00 2.59
643 661 7.232910 AGGGTCTTCATACTACTACATACTCC 58.767 42.308 0.00 0.00 0.00 3.85
644 662 6.433716 GGGTCTTCATACTACTACATACTCCC 59.566 46.154 0.00 0.00 0.00 4.30
645 663 7.232910 GGTCTTCATACTACTACATACTCCCT 58.767 42.308 0.00 0.00 0.00 4.20
646 664 7.391275 GGTCTTCATACTACTACATACTCCCTC 59.609 44.444 0.00 0.00 0.00 4.30
647 665 7.391275 GTCTTCATACTACTACATACTCCCTCC 59.609 44.444 0.00 0.00 0.00 4.30
648 666 5.802465 TCATACTACTACATACTCCCTCCG 58.198 45.833 0.00 0.00 0.00 4.63
649 667 5.309020 TCATACTACTACATACTCCCTCCGT 59.691 44.000 0.00 0.00 0.00 4.69
650 668 4.516652 ACTACTACATACTCCCTCCGTT 57.483 45.455 0.00 0.00 0.00 4.44
651 669 4.864726 ACTACTACATACTCCCTCCGTTT 58.135 43.478 0.00 0.00 0.00 3.60
652 670 4.886489 ACTACTACATACTCCCTCCGTTTC 59.114 45.833 0.00 0.00 0.00 2.78
653 671 3.705051 ACTACATACTCCCTCCGTTTCA 58.295 45.455 0.00 0.00 0.00 2.69
654 672 4.287552 ACTACATACTCCCTCCGTTTCAT 58.712 43.478 0.00 0.00 0.00 2.57
655 673 5.452255 ACTACATACTCCCTCCGTTTCATA 58.548 41.667 0.00 0.00 0.00 2.15
656 674 5.895534 ACTACATACTCCCTCCGTTTCATAA 59.104 40.000 0.00 0.00 0.00 1.90
657 675 5.888982 ACATACTCCCTCCGTTTCATAAT 57.111 39.130 0.00 0.00 0.00 1.28
658 676 5.611374 ACATACTCCCTCCGTTTCATAATG 58.389 41.667 0.00 0.00 0.00 1.90
659 677 5.130477 ACATACTCCCTCCGTTTCATAATGT 59.870 40.000 0.00 0.00 0.00 2.71
660 678 6.325545 ACATACTCCCTCCGTTTCATAATGTA 59.674 38.462 0.00 0.00 0.00 2.29
661 679 5.687166 ACTCCCTCCGTTTCATAATGTAA 57.313 39.130 0.00 0.00 0.00 2.41
662 680 5.671493 ACTCCCTCCGTTTCATAATGTAAG 58.329 41.667 0.00 0.00 0.00 2.34
663 681 5.424252 ACTCCCTCCGTTTCATAATGTAAGA 59.576 40.000 0.00 0.00 0.00 2.10
664 682 5.667466 TCCCTCCGTTTCATAATGTAAGAC 58.333 41.667 0.00 0.00 0.00 3.01
665 683 5.424252 TCCCTCCGTTTCATAATGTAAGACT 59.576 40.000 0.00 0.00 0.00 3.24
666 684 6.608405 TCCCTCCGTTTCATAATGTAAGACTA 59.392 38.462 0.00 0.00 0.00 2.59
667 685 6.924060 CCCTCCGTTTCATAATGTAAGACTAG 59.076 42.308 0.00 0.00 0.00 2.57
668 686 7.417570 CCCTCCGTTTCATAATGTAAGACTAGT 60.418 40.741 0.00 0.00 0.00 2.57
669 687 7.435488 CCTCCGTTTCATAATGTAAGACTAGTG 59.565 40.741 0.00 0.00 0.00 2.74
670 688 7.833786 TCCGTTTCATAATGTAAGACTAGTGT 58.166 34.615 0.00 0.00 0.00 3.55
671 689 7.972277 TCCGTTTCATAATGTAAGACTAGTGTC 59.028 37.037 0.00 0.00 43.22 3.67
831 851 2.256764 CGACAGAGACGCACTGCT 59.743 61.111 0.00 0.00 38.74 4.24
832 852 1.502190 CGACAGAGACGCACTGCTA 59.498 57.895 0.00 0.00 38.74 3.49
833 853 0.099613 CGACAGAGACGCACTGCTAT 59.900 55.000 0.00 0.00 38.74 2.97
834 854 1.833860 GACAGAGACGCACTGCTATC 58.166 55.000 0.00 0.00 38.74 2.08
835 855 1.403679 GACAGAGACGCACTGCTATCT 59.596 52.381 4.72 4.72 38.74 1.98
836 856 2.614520 GACAGAGACGCACTGCTATCTA 59.385 50.000 0.00 0.00 38.74 1.98
858 882 3.725459 CACTTGCACCGCATCGCA 61.725 61.111 0.00 0.00 38.76 5.10
940 977 6.767524 ATCTAGTGTCTTGTACTCTGAAGG 57.232 41.667 0.00 0.00 33.96 3.46
1026 1073 0.470456 ACACTACCAGGAACCGGACA 60.470 55.000 9.46 0.00 0.00 4.02
1152 1199 1.525077 GGAGAACAACACGGGCACA 60.525 57.895 0.00 0.00 0.00 4.57
1155 1202 1.822186 GAACAACACGGGCACACCT 60.822 57.895 0.00 0.00 36.97 4.00
1222 1301 4.693042 ACTCTACATAGTCGCTCTACCT 57.307 45.455 0.00 0.00 0.00 3.08
1249 1334 1.714794 AGATTCACTCGTTTCAGCGG 58.285 50.000 0.00 0.00 0.00 5.52
1250 1335 0.095417 GATTCACTCGTTTCAGCGGC 59.905 55.000 0.00 0.00 0.00 6.53
1260 1345 3.747010 TCGTTTCAGCGGCAGTTAATTTA 59.253 39.130 1.45 0.00 0.00 1.40
1268 1357 4.102681 AGCGGCAGTTAATTTAGGGAGTAT 59.897 41.667 1.45 0.00 0.00 2.12
1296 1387 2.157738 GTTTTGCTCTGCATCTCACCT 58.842 47.619 0.00 0.00 38.76 4.00
1304 1395 1.746470 TGCATCTCACCTTGCAGATG 58.254 50.000 6.93 6.93 46.12 2.90
1401 1536 5.940470 ACTTTTGAAAAGGACGATCATAGCT 59.060 36.000 20.48 0.00 0.00 3.32
1499 1634 6.467677 AGGGATATGGAATTTGACGATGTAG 58.532 40.000 0.00 0.00 0.00 2.74
1502 1637 6.428159 GGATATGGAATTTGACGATGTAGCTT 59.572 38.462 0.00 0.00 0.00 3.74
1551 1840 6.782150 TCACACGTACTGTATTAGTCATGAG 58.218 40.000 0.00 0.00 40.89 2.90
1608 1898 3.994392 TCTTTAAACTTGCAGCTCTACCG 59.006 43.478 0.00 0.00 0.00 4.02
1645 1939 5.741011 TCCCATTCTTGTACTTCATGGTAC 58.259 41.667 5.57 5.57 41.51 3.34
1648 1942 6.334989 CCATTCTTGTACTTCATGGTACGTA 58.665 40.000 7.49 0.00 43.36 3.57
1649 1943 6.984474 CCATTCTTGTACTTCATGGTACGTAT 59.016 38.462 0.00 0.00 43.36 3.06
1650 1944 7.042725 CCATTCTTGTACTTCATGGTACGTATG 60.043 40.741 0.00 0.00 43.36 2.39
1651 1945 6.519679 TCTTGTACTTCATGGTACGTATGT 57.480 37.500 0.00 0.00 43.36 2.29
1663 1957 6.193514 TGGTACGTATGTTAACGATCTCAA 57.806 37.500 0.00 0.00 45.68 3.02
1666 1960 7.433131 TGGTACGTATGTTAACGATCTCAATTC 59.567 37.037 0.00 0.00 45.68 2.17
1667 1961 7.433131 GGTACGTATGTTAACGATCTCAATTCA 59.567 37.037 0.00 0.00 45.68 2.57
1720 5906 1.065418 CCTTCGCCTGACCCAACTAAT 60.065 52.381 0.00 0.00 0.00 1.73
1764 5950 7.384932 AGTTTGCTGAATTTTACTGTTAATGCC 59.615 33.333 0.00 0.00 0.00 4.40
1765 5951 5.398169 TGCTGAATTTTACTGTTAATGCCG 58.602 37.500 0.00 0.00 0.00 5.69
1779 5965 6.479436 TGTTAATGCCGTATTTATTCACACG 58.521 36.000 0.00 0.00 0.00 4.49
1807 5993 3.584406 TTTTGCGGGTTATTCACATGG 57.416 42.857 0.00 0.00 0.00 3.66
1816 6002 6.405397 GCGGGTTATTCACATGGAAATTTACT 60.405 38.462 1.27 0.00 39.39 2.24
1884 6077 8.791327 TTAGCATAAACATTTCTGACTCATGA 57.209 30.769 0.00 0.00 0.00 3.07
1885 6078 7.081526 AGCATAAACATTTCTGACTCATGAC 57.918 36.000 0.00 0.00 0.00 3.06
1886 6079 6.656270 AGCATAAACATTTCTGACTCATGACA 59.344 34.615 0.00 0.00 0.00 3.58
2097 6461 8.103948 AGACCTCATAAAAACAATGAACAGAG 57.896 34.615 0.00 0.00 33.13 3.35
2119 6483 7.222417 CAGAGATACACTGCAAAAGAGATACAG 59.778 40.741 0.00 0.00 0.00 2.74
2122 6486 2.738846 CACTGCAAAAGAGATACAGCGT 59.261 45.455 0.00 0.00 31.46 5.07
2137 6501 2.093500 ACAGCGTATTCATGCCTTCAGA 60.093 45.455 0.00 0.00 37.39 3.27
2224 6589 2.292569 CCGATGGGAGCAAATGATTGAG 59.707 50.000 0.00 0.00 35.22 3.02
2258 6624 0.389948 AACCGCCAAGATCGACACTC 60.390 55.000 0.00 0.00 0.00 3.51
2278 6644 6.940867 ACACTCTCAAGGGTTTATTTAGTTCC 59.059 38.462 0.00 0.00 34.70 3.62
2456 6834 7.703298 AAACTCATTGAATCAACAACATGTG 57.297 32.000 0.00 0.00 32.50 3.21
2923 7362 6.936900 ACTAATACCATGGCATCAGTTATGTC 59.063 38.462 13.04 0.00 40.84 3.06
2929 7368 4.769345 TGGCATCAGTTATGTCATGGTA 57.231 40.909 0.00 0.00 45.25 3.25
2930 7369 4.707105 TGGCATCAGTTATGTCATGGTAG 58.293 43.478 0.00 0.00 45.25 3.18
2931 7370 3.499918 GGCATCAGTTATGTCATGGTAGC 59.500 47.826 0.00 0.00 40.14 3.58
2932 7371 4.129380 GCATCAGTTATGTCATGGTAGCA 58.871 43.478 0.00 0.00 37.93 3.49
2933 7372 4.576053 GCATCAGTTATGTCATGGTAGCAA 59.424 41.667 0.00 0.00 37.93 3.91
2935 7374 5.420725 TCAGTTATGTCATGGTAGCAACT 57.579 39.130 0.00 0.00 0.00 3.16
2936 7375 6.538945 TCAGTTATGTCATGGTAGCAACTA 57.461 37.500 0.00 0.00 0.00 2.24
2937 7376 6.941857 TCAGTTATGTCATGGTAGCAACTAA 58.058 36.000 0.00 0.00 0.00 2.24
2938 7377 7.564793 TCAGTTATGTCATGGTAGCAACTAAT 58.435 34.615 0.00 0.00 0.00 1.73
2939 7378 8.700973 TCAGTTATGTCATGGTAGCAACTAATA 58.299 33.333 0.00 0.00 0.00 0.98
2940 7379 8.765219 CAGTTATGTCATGGTAGCAACTAATAC 58.235 37.037 0.00 0.00 0.00 1.89
2941 7380 7.931948 AGTTATGTCATGGTAGCAACTAATACC 59.068 37.037 0.00 0.00 41.60 2.73
2946 7385 3.815809 TGGTAGCAACTAATACCATGGC 58.184 45.455 13.04 0.00 45.05 4.40
2947 7386 3.201045 TGGTAGCAACTAATACCATGGCA 59.799 43.478 13.04 0.00 45.05 4.92
2948 7387 4.141274 TGGTAGCAACTAATACCATGGCAT 60.141 41.667 13.04 0.05 45.05 4.40
2949 7388 4.455877 GGTAGCAACTAATACCATGGCATC 59.544 45.833 13.04 0.00 41.02 3.91
2950 7389 4.169059 AGCAACTAATACCATGGCATCA 57.831 40.909 13.04 0.00 0.00 3.07
2951 7390 4.139786 AGCAACTAATACCATGGCATCAG 58.860 43.478 13.04 1.81 0.00 2.90
2952 7391 3.885297 GCAACTAATACCATGGCATCAGT 59.115 43.478 13.04 2.62 0.00 3.41
2953 7392 4.339247 GCAACTAATACCATGGCATCAGTT 59.661 41.667 13.04 9.91 0.00 3.16
2954 7393 5.530915 GCAACTAATACCATGGCATCAGTTA 59.469 40.000 12.48 0.00 0.00 2.24
2955 7394 6.207417 GCAACTAATACCATGGCATCAGTTAT 59.793 38.462 12.48 0.00 0.00 1.89
2956 7395 7.587629 CAACTAATACCATGGCATCAGTTATG 58.412 38.462 12.48 0.07 38.74 1.90
2957 7396 6.841601 ACTAATACCATGGCATCAGTTATGT 58.158 36.000 13.04 0.00 37.93 2.29
2984 7425 6.327279 ACTAATTGTTGACTTTTACAGGCC 57.673 37.500 0.00 0.00 0.00 5.19
3134 7704 1.449070 GGTACAGGTAAGCACGGGC 60.449 63.158 0.00 0.00 41.61 6.13
3267 8485 5.897377 ACACACTTGTTTTCTTACTTGCT 57.103 34.783 0.00 0.00 28.43 3.91
3454 8686 0.445436 CACTGATCGCCTTTGCTGTC 59.555 55.000 0.00 0.00 34.43 3.51
3591 8824 5.734720 TGGTTAACTCTGAGACATCCATTC 58.265 41.667 12.44 0.00 0.00 2.67
3599 8832 5.523588 TCTGAGACATCCATTCCTAGTCTT 58.476 41.667 0.00 0.00 39.47 3.01
3628 8861 8.683615 ACTTGTAGAGGGTTCTTTTAAGTTTTG 58.316 33.333 0.00 0.00 34.79 2.44
3668 8901 5.036737 CACATTTTCAGCCCGAATTGATAC 58.963 41.667 0.00 0.00 32.32 2.24
3986 9593 3.355378 TGTATCAATTGTTGAGCCCCTG 58.645 45.455 5.13 0.00 43.98 4.45
4121 9764 8.887393 ACTTAGAAAGGGAAGTAGAAATGGTTA 58.113 33.333 0.00 0.00 34.13 2.85
4680 10350 5.116882 ACCATAAGCTCACGAAACTATTCC 58.883 41.667 0.00 0.00 31.52 3.01
5155 10844 5.995282 TCTAATACTAAATGCCACCCATTCG 59.005 40.000 0.00 0.00 43.22 3.34
5566 11261 4.389374 AGTGTCAACAATTCCATCTCGTT 58.611 39.130 0.00 0.00 0.00 3.85
5635 11541 6.183360 TGCTGTATCAATTTTGAGCAATAGGG 60.183 38.462 0.00 0.00 41.08 3.53
6155 12299 8.831550 GTTCCTTTATCAGATTGGACATAAGAC 58.168 37.037 0.00 0.00 0.00 3.01
6287 12431 3.385111 GTCACTAGTAAGCCTACCAGCAT 59.615 47.826 0.00 0.00 34.23 3.79
6733 12982 5.153513 CAATGGATGGTGTGAAAAGTTACG 58.846 41.667 0.00 0.00 0.00 3.18
6789 13043 1.699054 CGATCCTCAATCCAGCCCCA 61.699 60.000 0.00 0.00 0.00 4.96
6827 13081 7.717568 AGCCAGTGATTATACTTGTACAGTAG 58.282 38.462 0.00 0.00 41.54 2.57
6910 13195 7.050970 TGAACTGTGAGATACTGTGTAAACT 57.949 36.000 0.00 0.00 40.76 2.66
6975 13260 2.034558 CCTTGTCTGTTGCGACCATTTT 59.965 45.455 0.45 0.00 32.97 1.82
7005 13296 5.680619 TCCCACTAAGCATAAATTGATCGT 58.319 37.500 0.00 0.00 0.00 3.73
7034 13325 7.093201 TGTCCCTCCTAAGTAAATACGTGAAAT 60.093 37.037 0.00 0.00 0.00 2.17
7061 13352 2.684881 CGCCACCTGCTCATCTTATTTT 59.315 45.455 0.00 0.00 38.05 1.82
7072 13363 3.064271 TCATCTTATTTTAACCGTGGCGC 59.936 43.478 0.00 0.00 0.00 6.53
7092 13383 4.033019 CGCAGTTGTGATAATCATGCAAG 58.967 43.478 0.00 0.00 30.42 4.01
7102 13393 8.525316 TGTGATAATCATGCAAGAAACAAGAAT 58.475 29.630 0.00 0.00 0.00 2.40
7132 13423 7.502561 GCATAAGATTACCCAAGTAAACATCCT 59.497 37.037 0.00 0.00 41.68 3.24
7139 13430 4.291249 ACCCAAGTAAACATCCTATGTGGT 59.709 41.667 0.00 0.00 44.07 4.16
7181 13472 8.190784 ACCAAACAAGAATGAAGAAAAGTAGTG 58.809 33.333 0.00 0.00 0.00 2.74
7184 13475 9.788960 AAACAAGAATGAAGAAAAGTAGTGTTC 57.211 29.630 0.00 0.00 0.00 3.18
7195 13486 7.547227 AGAAAAGTAGTGTTCTGCAAAACATT 58.453 30.769 9.17 7.54 40.96 2.71
7200 13491 8.220755 AGTAGTGTTCTGCAAAACATTTAAGA 57.779 30.769 9.17 0.00 40.96 2.10
7202 13493 7.935338 AGTGTTCTGCAAAACATTTAAGATG 57.065 32.000 9.17 0.00 40.96 2.90
7222 13513 7.856145 AGATGAAGAAAATACCATGAGTGAC 57.144 36.000 0.00 0.00 0.00 3.67
7224 13515 4.935205 TGAAGAAAATACCATGAGTGACGG 59.065 41.667 0.00 0.00 0.00 4.79
7229 13520 1.327690 TACCATGAGTGACGGAGGCC 61.328 60.000 0.00 0.00 0.00 5.19
7254 13545 4.357142 CACAAATCATCCATGCTTAGCAC 58.643 43.478 9.82 0.00 43.04 4.40
7255 13546 3.065786 ACAAATCATCCATGCTTAGCACG 59.934 43.478 9.82 0.00 43.04 5.34
7275 13568 3.328931 ACGCCCATTCTGATCCTATCAAT 59.671 43.478 0.00 0.00 39.11 2.57
7276 13569 3.688185 CGCCCATTCTGATCCTATCAATG 59.312 47.826 0.00 0.00 39.11 2.82
7280 13573 3.795688 TTCTGATCCTATCAATGCCCC 57.204 47.619 0.00 0.00 39.11 5.80
7376 13669 5.734498 GCGTGACATCAGCAAAATTAAGTAG 59.266 40.000 0.00 0.00 0.00 2.57
7387 13680 6.923508 AGCAAAATTAAGTAGGAAAACTGCAC 59.076 34.615 0.00 0.00 33.78 4.57
7392 13685 4.699925 AAGTAGGAAAACTGCACAGGTA 57.300 40.909 2.21 0.00 33.78 3.08
7408 13701 6.719370 TGCACAGGTAAGAGTTTATGGAAAAT 59.281 34.615 0.00 0.00 0.00 1.82
7474 13767 6.820656 ACTATCATGTAAGAACCTCTGCAAAG 59.179 38.462 0.00 0.00 0.00 2.77
7477 13770 4.008074 TGTAAGAACCTCTGCAAAGGAG 57.992 45.455 14.57 3.48 38.87 3.69
7482 13775 3.648545 AGAACCTCTGCAAAGGAGTAACT 59.351 43.478 14.57 1.53 38.87 2.24
7484 13777 2.039084 ACCTCTGCAAAGGAGTAACTGG 59.961 50.000 14.57 0.00 38.87 4.00
7519 13821 5.108517 CCTCTGAAGTCTGAAACATAGCTC 58.891 45.833 0.00 0.00 0.00 4.09
7529 13831 5.645067 TCTGAAACATAGCTCATGGAAGTTG 59.355 40.000 0.00 0.00 39.13 3.16
7549 13851 6.985117 AGTTGAGAGCTCTATCATTCTGATC 58.015 40.000 18.25 0.00 38.26 2.92
7551 13853 5.643176 TGAGAGCTCTATCATTCTGATCCT 58.357 41.667 18.25 0.00 38.26 3.24
7580 13882 3.123621 GCTTATAATCCAGGAATGACGCG 59.876 47.826 3.53 3.53 0.00 6.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.923733 ATTGGGTTGGCGATAACAATAAA 57.076 34.783 4.90 0.00 32.22 1.40
81 82 3.594134 CCTTCATGAGACTCTTCACCAC 58.406 50.000 3.68 0.00 0.00 4.16
117 118 4.104102 TCCTTTTCCAGCCTCTTGTTCTTA 59.896 41.667 0.00 0.00 0.00 2.10
119 120 2.443255 TCCTTTTCCAGCCTCTTGTTCT 59.557 45.455 0.00 0.00 0.00 3.01
135 139 4.223923 ACGATTCTCATCAACTCCTCCTTT 59.776 41.667 0.00 0.00 0.00 3.11
137 141 3.370104 ACGATTCTCATCAACTCCTCCT 58.630 45.455 0.00 0.00 0.00 3.69
193 202 1.790755 AGCTACAAACACGCATCGAA 58.209 45.000 0.00 0.00 0.00 3.71
196 205 1.729149 GCCAAGCTACAAACACGCATC 60.729 52.381 0.00 0.00 0.00 3.91
202 211 1.169661 CGGTGGCCAAGCTACAAACA 61.170 55.000 7.24 0.00 41.80 2.83
313 322 1.754234 GGCCCTCGACATTGCCAAT 60.754 57.895 0.00 0.00 43.46 3.16
350 359 4.327357 CGACAAGAGTGATGTGATGGTAAC 59.673 45.833 0.00 0.00 0.00 2.50
417 432 3.511934 AGACATCGCTAACCTGAAGTTCT 59.488 43.478 4.17 0.00 40.05 3.01
439 454 0.178967 TGGTTGAAGGCTTGGATGCA 60.179 50.000 3.46 0.00 34.04 3.96
446 461 3.028850 CCATCATCATGGTTGAAGGCTT 58.971 45.455 0.00 0.00 44.46 4.35
491 509 1.677633 CCGGTGGCTTCGGGATTTT 60.678 57.895 10.43 0.00 43.45 1.82
493 511 4.796495 GCCGGTGGCTTCGGGATT 62.796 66.667 17.68 0.00 46.69 3.01
534 552 6.494491 TGGATTGTTGATCTGATCAGGTTTTT 59.506 34.615 22.42 3.12 40.94 1.94
535 553 6.012113 TGGATTGTTGATCTGATCAGGTTTT 58.988 36.000 22.42 5.57 40.94 2.43
536 554 5.416952 GTGGATTGTTGATCTGATCAGGTTT 59.583 40.000 22.42 8.06 40.94 3.27
537 555 4.946157 GTGGATTGTTGATCTGATCAGGTT 59.054 41.667 22.42 10.60 40.94 3.50
538 556 4.019051 TGTGGATTGTTGATCTGATCAGGT 60.019 41.667 22.42 16.45 40.94 4.00
539 557 4.520179 TGTGGATTGTTGATCTGATCAGG 58.480 43.478 22.42 4.43 40.94 3.86
540 558 6.150641 AGTTTGTGGATTGTTGATCTGATCAG 59.849 38.462 17.07 17.07 40.94 2.90
541 559 6.005823 AGTTTGTGGATTGTTGATCTGATCA 58.994 36.000 16.06 16.06 37.55 2.92
542 560 6.506500 AGTTTGTGGATTGTTGATCTGATC 57.493 37.500 10.72 10.72 35.02 2.92
543 561 6.942005 TGTAGTTTGTGGATTGTTGATCTGAT 59.058 34.615 0.00 0.00 35.02 2.90
544 562 6.295249 TGTAGTTTGTGGATTGTTGATCTGA 58.705 36.000 0.00 0.00 35.02 3.27
545 563 6.558771 TGTAGTTTGTGGATTGTTGATCTG 57.441 37.500 0.00 0.00 35.02 2.90
546 564 6.293407 CGTTGTAGTTTGTGGATTGTTGATCT 60.293 38.462 0.00 0.00 35.02 2.75
547 565 5.851177 CGTTGTAGTTTGTGGATTGTTGATC 59.149 40.000 0.00 0.00 0.00 2.92
548 566 5.278266 CCGTTGTAGTTTGTGGATTGTTGAT 60.278 40.000 0.00 0.00 0.00 2.57
549 567 4.035792 CCGTTGTAGTTTGTGGATTGTTGA 59.964 41.667 0.00 0.00 0.00 3.18
550 568 4.201970 ACCGTTGTAGTTTGTGGATTGTTG 60.202 41.667 0.00 0.00 0.00 3.33
551 569 3.949113 ACCGTTGTAGTTTGTGGATTGTT 59.051 39.130 0.00 0.00 0.00 2.83
552 570 3.547746 ACCGTTGTAGTTTGTGGATTGT 58.452 40.909 0.00 0.00 0.00 2.71
553 571 5.445845 GTTACCGTTGTAGTTTGTGGATTG 58.554 41.667 0.00 0.00 0.00 2.67
554 572 4.516321 GGTTACCGTTGTAGTTTGTGGATT 59.484 41.667 0.00 0.00 0.00 3.01
555 573 4.067192 GGTTACCGTTGTAGTTTGTGGAT 58.933 43.478 0.00 0.00 0.00 3.41
556 574 3.118482 TGGTTACCGTTGTAGTTTGTGGA 60.118 43.478 0.00 0.00 0.00 4.02
557 575 3.204526 TGGTTACCGTTGTAGTTTGTGG 58.795 45.455 0.00 0.00 0.00 4.17
558 576 6.183360 GGATATGGTTACCGTTGTAGTTTGTG 60.183 42.308 0.00 0.00 0.00 3.33
559 577 5.876460 GGATATGGTTACCGTTGTAGTTTGT 59.124 40.000 0.00 0.00 0.00 2.83
560 578 5.005971 CGGATATGGTTACCGTTGTAGTTTG 59.994 44.000 0.00 0.00 41.47 2.93
561 579 5.111293 CGGATATGGTTACCGTTGTAGTTT 58.889 41.667 0.00 0.00 41.47 2.66
562 580 4.685924 CGGATATGGTTACCGTTGTAGTT 58.314 43.478 0.00 0.00 41.47 2.24
563 581 3.491447 GCGGATATGGTTACCGTTGTAGT 60.491 47.826 0.00 0.00 46.95 2.73
564 582 3.054878 GCGGATATGGTTACCGTTGTAG 58.945 50.000 0.00 0.00 46.95 2.74
565 583 2.429971 TGCGGATATGGTTACCGTTGTA 59.570 45.455 0.00 0.00 46.95 2.41
566 584 1.207570 TGCGGATATGGTTACCGTTGT 59.792 47.619 0.00 0.00 46.95 3.32
567 585 1.595794 GTGCGGATATGGTTACCGTTG 59.404 52.381 0.00 0.00 46.95 4.10
568 586 1.473788 GGTGCGGATATGGTTACCGTT 60.474 52.381 0.00 0.00 46.95 4.44
569 587 0.105408 GGTGCGGATATGGTTACCGT 59.895 55.000 0.41 0.41 46.95 4.83
571 589 1.944709 GTTGGTGCGGATATGGTTACC 59.055 52.381 0.00 0.00 0.00 2.85
572 590 2.634600 TGTTGGTGCGGATATGGTTAC 58.365 47.619 0.00 0.00 0.00 2.50
573 591 3.351794 TTGTTGGTGCGGATATGGTTA 57.648 42.857 0.00 0.00 0.00 2.85
574 592 2.208132 TTGTTGGTGCGGATATGGTT 57.792 45.000 0.00 0.00 0.00 3.67
575 593 2.092429 AGATTGTTGGTGCGGATATGGT 60.092 45.455 0.00 0.00 0.00 3.55
576 594 2.549754 GAGATTGTTGGTGCGGATATGG 59.450 50.000 0.00 0.00 0.00 2.74
577 595 3.205338 TGAGATTGTTGGTGCGGATATG 58.795 45.455 0.00 0.00 0.00 1.78
578 596 3.558931 TGAGATTGTTGGTGCGGATAT 57.441 42.857 0.00 0.00 0.00 1.63
579 597 3.118445 TCATGAGATTGTTGGTGCGGATA 60.118 43.478 0.00 0.00 0.00 2.59
580 598 2.019249 CATGAGATTGTTGGTGCGGAT 58.981 47.619 0.00 0.00 0.00 4.18
581 599 1.003003 TCATGAGATTGTTGGTGCGGA 59.997 47.619 0.00 0.00 0.00 5.54
582 600 1.131126 GTCATGAGATTGTTGGTGCGG 59.869 52.381 0.00 0.00 0.00 5.69
583 601 1.805943 TGTCATGAGATTGTTGGTGCG 59.194 47.619 0.00 0.00 0.00 5.34
584 602 3.441222 TGATGTCATGAGATTGTTGGTGC 59.559 43.478 6.82 0.00 0.00 5.01
585 603 4.456566 TGTGATGTCATGAGATTGTTGGTG 59.543 41.667 6.82 0.00 0.00 4.17
586 604 4.654915 TGTGATGTCATGAGATTGTTGGT 58.345 39.130 6.82 0.00 0.00 3.67
587 605 5.355910 TCATGTGATGTCATGAGATTGTTGG 59.644 40.000 6.82 0.00 45.89 3.77
588 606 6.431198 TCATGTGATGTCATGAGATTGTTG 57.569 37.500 6.82 3.77 45.89 3.33
603 621 5.104235 TGAAGACCCTCATCATTCATGTGAT 60.104 40.000 0.00 0.00 39.34 3.06
604 622 4.225717 TGAAGACCCTCATCATTCATGTGA 59.774 41.667 0.00 0.00 33.66 3.58
605 623 4.520179 TGAAGACCCTCATCATTCATGTG 58.480 43.478 0.00 0.00 33.66 3.21
606 624 4.849813 TGAAGACCCTCATCATTCATGT 57.150 40.909 0.00 0.00 33.66 3.21
607 625 6.531923 AGTATGAAGACCCTCATCATTCATG 58.468 40.000 8.56 0.00 40.02 3.07
608 626 6.760440 AGTATGAAGACCCTCATCATTCAT 57.240 37.500 4.38 4.38 41.91 2.57
609 627 6.841229 AGTAGTATGAAGACCCTCATCATTCA 59.159 38.462 0.00 0.00 36.39 2.57
610 628 7.296628 AGTAGTATGAAGACCCTCATCATTC 57.703 40.000 0.00 0.00 36.39 2.67
611 629 7.785028 TGTAGTAGTATGAAGACCCTCATCATT 59.215 37.037 0.00 0.00 36.39 2.57
612 630 7.298374 TGTAGTAGTATGAAGACCCTCATCAT 58.702 38.462 0.00 0.00 38.26 2.45
613 631 6.669631 TGTAGTAGTATGAAGACCCTCATCA 58.330 40.000 0.00 0.00 37.27 3.07
614 632 7.768807 ATGTAGTAGTATGAAGACCCTCATC 57.231 40.000 0.00 0.00 37.27 2.92
615 633 8.449625 AGTATGTAGTAGTATGAAGACCCTCAT 58.550 37.037 0.00 0.00 39.41 2.90
616 634 7.813331 AGTATGTAGTAGTATGAAGACCCTCA 58.187 38.462 0.00 0.00 0.00 3.86
617 635 7.391275 GGAGTATGTAGTAGTATGAAGACCCTC 59.609 44.444 0.00 0.00 0.00 4.30
618 636 7.232910 GGAGTATGTAGTAGTATGAAGACCCT 58.767 42.308 0.00 0.00 0.00 4.34
619 637 6.433716 GGGAGTATGTAGTAGTATGAAGACCC 59.566 46.154 0.00 0.00 0.00 4.46
620 638 7.232910 AGGGAGTATGTAGTAGTATGAAGACC 58.767 42.308 0.00 0.00 0.00 3.85
621 639 7.391275 GGAGGGAGTATGTAGTAGTATGAAGAC 59.609 44.444 0.00 0.00 0.00 3.01
622 640 7.460071 GGAGGGAGTATGTAGTAGTATGAAGA 58.540 42.308 0.00 0.00 0.00 2.87
623 641 6.372103 CGGAGGGAGTATGTAGTAGTATGAAG 59.628 46.154 0.00 0.00 0.00 3.02
624 642 6.183361 ACGGAGGGAGTATGTAGTAGTATGAA 60.183 42.308 0.00 0.00 0.00 2.57
625 643 5.309020 ACGGAGGGAGTATGTAGTAGTATGA 59.691 44.000 0.00 0.00 0.00 2.15
626 644 5.558818 ACGGAGGGAGTATGTAGTAGTATG 58.441 45.833 0.00 0.00 0.00 2.39
627 645 5.839517 ACGGAGGGAGTATGTAGTAGTAT 57.160 43.478 0.00 0.00 0.00 2.12
628 646 5.636903 AACGGAGGGAGTATGTAGTAGTA 57.363 43.478 0.00 0.00 0.00 1.82
629 647 4.516652 AACGGAGGGAGTATGTAGTAGT 57.483 45.455 0.00 0.00 0.00 2.73
630 648 4.885907 TGAAACGGAGGGAGTATGTAGTAG 59.114 45.833 0.00 0.00 0.00 2.57
631 649 4.858850 TGAAACGGAGGGAGTATGTAGTA 58.141 43.478 0.00 0.00 0.00 1.82
632 650 3.705051 TGAAACGGAGGGAGTATGTAGT 58.295 45.455 0.00 0.00 0.00 2.73
633 651 4.939052 ATGAAACGGAGGGAGTATGTAG 57.061 45.455 0.00 0.00 0.00 2.74
634 652 6.325545 ACATTATGAAACGGAGGGAGTATGTA 59.674 38.462 0.00 0.00 0.00 2.29
635 653 5.130477 ACATTATGAAACGGAGGGAGTATGT 59.870 40.000 0.00 0.00 0.00 2.29
636 654 5.611374 ACATTATGAAACGGAGGGAGTATG 58.389 41.667 0.00 0.00 0.00 2.39
637 655 5.888982 ACATTATGAAACGGAGGGAGTAT 57.111 39.130 0.00 0.00 0.00 2.12
638 656 6.608405 TCTTACATTATGAAACGGAGGGAGTA 59.392 38.462 0.00 0.00 0.00 2.59
639 657 5.424252 TCTTACATTATGAAACGGAGGGAGT 59.576 40.000 0.00 0.00 0.00 3.85
640 658 5.753921 GTCTTACATTATGAAACGGAGGGAG 59.246 44.000 0.00 0.00 0.00 4.30
641 659 5.424252 AGTCTTACATTATGAAACGGAGGGA 59.576 40.000 0.00 0.00 0.00 4.20
642 660 5.671493 AGTCTTACATTATGAAACGGAGGG 58.329 41.667 0.00 0.00 0.00 4.30
643 661 7.435488 CACTAGTCTTACATTATGAAACGGAGG 59.565 40.741 0.00 0.00 0.00 4.30
644 662 7.974501 ACACTAGTCTTACATTATGAAACGGAG 59.025 37.037 0.00 0.00 0.00 4.63
645 663 7.833786 ACACTAGTCTTACATTATGAAACGGA 58.166 34.615 0.00 0.00 0.00 4.69
646 664 8.116624 GACACTAGTCTTACATTATGAAACGG 57.883 38.462 0.00 0.00 41.64 4.44
662 680 8.812329 CACTTGCAATATTCTAAGACACTAGTC 58.188 37.037 0.00 0.00 45.31 2.59
663 681 7.278868 GCACTTGCAATATTCTAAGACACTAGT 59.721 37.037 0.00 0.00 41.59 2.57
664 682 7.625553 GCACTTGCAATATTCTAAGACACTAG 58.374 38.462 0.00 0.00 41.59 2.57
665 683 7.539712 GCACTTGCAATATTCTAAGACACTA 57.460 36.000 0.00 0.00 41.59 2.74
666 684 6.428385 GCACTTGCAATATTCTAAGACACT 57.572 37.500 0.00 0.00 41.59 3.55
873 897 3.195698 GTAGCCAAGCCGAAGCCG 61.196 66.667 0.00 0.00 41.25 5.52
874 898 1.968050 TAGGTAGCCAAGCCGAAGCC 61.968 60.000 0.00 0.00 41.25 4.35
875 899 0.106894 ATAGGTAGCCAAGCCGAAGC 59.893 55.000 0.00 0.00 40.32 3.86
876 900 3.963428 ATATAGGTAGCCAAGCCGAAG 57.037 47.619 0.00 0.00 0.00 3.79
877 901 4.589798 TGTTATATAGGTAGCCAAGCCGAA 59.410 41.667 0.00 0.00 0.00 4.30
878 902 4.154176 TGTTATATAGGTAGCCAAGCCGA 58.846 43.478 0.00 0.00 0.00 5.54
914 949 8.349245 CCTTCAGAGTACAAGACACTAGATATG 58.651 40.741 0.00 0.00 0.00 1.78
916 951 7.403671 ACCTTCAGAGTACAAGACACTAGATA 58.596 38.462 0.00 0.00 0.00 1.98
917 952 6.249951 ACCTTCAGAGTACAAGACACTAGAT 58.750 40.000 0.00 0.00 0.00 1.98
918 953 5.632118 ACCTTCAGAGTACAAGACACTAGA 58.368 41.667 0.00 0.00 0.00 2.43
919 954 5.968528 ACCTTCAGAGTACAAGACACTAG 57.031 43.478 0.00 0.00 0.00 2.57
940 977 1.738099 CTGACTGCACCGCCAGTAC 60.738 63.158 2.26 0.00 45.55 2.73
987 1034 2.438254 CCCATTGCTGCCACGCTA 60.438 61.111 0.00 0.00 0.00 4.26
991 1038 4.120331 GTCGCCCATTGCTGCCAC 62.120 66.667 0.00 0.00 38.05 5.01
1026 1073 0.250793 TGTCGTTACCATGCGGGAAT 59.749 50.000 0.60 0.00 37.49 3.01
1083 1130 1.406614 CCCTCGTAGTACACCGTCTCT 60.407 57.143 0.38 0.00 0.00 3.10
1152 1199 4.831710 ACGTAGAAGAACTCCTTGTAAGGT 59.168 41.667 10.28 0.00 46.54 3.50
1155 1202 4.083110 CCGACGTAGAAGAACTCCTTGTAA 60.083 45.833 0.00 0.00 33.16 2.41
1222 1301 7.431376 CGCTGAAACGAGTGAATCTAATACTTA 59.569 37.037 0.00 0.00 34.06 2.24
1240 1325 4.412207 CCTAAATTAACTGCCGCTGAAAC 58.588 43.478 4.02 0.00 0.00 2.78
1260 1345 9.950496 CAGAGCAAAACATATATAATACTCCCT 57.050 33.333 0.00 0.00 0.00 4.20
1268 1357 8.777413 GTGAGATGCAGAGCAAAACATATATAA 58.223 33.333 0.00 0.00 43.62 0.98
1296 1387 8.840833 TGTACAGTAAAAGAATACATCTGCAA 57.159 30.769 0.00 0.00 38.79 4.08
1474 1609 6.433847 ACATCGTCAAATTCCATATCCCTA 57.566 37.500 0.00 0.00 0.00 3.53
1481 1616 6.515272 AAAAGCTACATCGTCAAATTCCAT 57.485 33.333 0.00 0.00 0.00 3.41
1482 1617 5.957842 AAAAGCTACATCGTCAAATTCCA 57.042 34.783 0.00 0.00 0.00 3.53
1520 1720 0.314302 ACAGTACGTGTGAGCTCACC 59.686 55.000 37.23 27.73 45.88 4.02
1522 1722 4.698780 ACTAATACAGTACGTGTGAGCTCA 59.301 41.667 13.74 13.74 40.69 4.26
1551 1840 4.660789 ATATTGCAAGAAACATGGCCTC 57.339 40.909 3.32 0.00 0.00 4.70
1586 1875 3.994392 CGGTAGAGCTGCAAGTTTAAAGA 59.006 43.478 1.02 0.00 35.30 2.52
1645 1939 9.147364 CAATTGAATTGAGATCGTTAACATACG 57.853 33.333 12.37 0.00 42.83 3.06
1786 5972 3.574396 TCCATGTGAATAACCCGCAAAAA 59.426 39.130 0.00 0.00 0.00 1.94
1787 5973 3.157881 TCCATGTGAATAACCCGCAAAA 58.842 40.909 0.00 0.00 0.00 2.44
1788 5974 2.796557 TCCATGTGAATAACCCGCAAA 58.203 42.857 0.00 0.00 0.00 3.68
1789 5975 2.498644 TCCATGTGAATAACCCGCAA 57.501 45.000 0.00 0.00 0.00 4.85
1790 5976 2.498644 TTCCATGTGAATAACCCGCA 57.501 45.000 0.00 0.00 0.00 5.69
1791 5977 4.385358 AATTTCCATGTGAATAACCCGC 57.615 40.909 0.00 0.00 31.67 6.13
1792 5978 7.095695 AGTAAATTTCCATGTGAATAACCCG 57.904 36.000 0.00 0.00 31.67 5.28
1793 5979 9.403583 TCTAGTAAATTTCCATGTGAATAACCC 57.596 33.333 0.00 0.00 31.67 4.11
1803 5989 9.305925 GCCATTTCTTTCTAGTAAATTTCCATG 57.694 33.333 0.00 0.00 0.00 3.66
1804 5990 9.034800 TGCCATTTCTTTCTAGTAAATTTCCAT 57.965 29.630 0.00 0.00 0.00 3.41
1805 5991 8.415950 TGCCATTTCTTTCTAGTAAATTTCCA 57.584 30.769 0.00 0.00 0.00 3.53
1806 5992 9.875691 ATTGCCATTTCTTTCTAGTAAATTTCC 57.124 29.630 0.00 0.00 0.00 3.13
1884 6077 4.650972 ATGGTTACAACTATGGTGGTGT 57.349 40.909 0.00 0.00 31.18 4.16
1885 6078 7.639113 AATAATGGTTACAACTATGGTGGTG 57.361 36.000 0.00 0.00 31.18 4.17
1886 6079 8.554011 ACTAATAATGGTTACAACTATGGTGGT 58.446 33.333 0.00 0.00 33.59 4.16
2097 6461 5.276584 CGCTGTATCTCTTTTGCAGTGTATC 60.277 44.000 0.00 0.00 34.24 2.24
2119 6483 3.133691 TCATCTGAAGGCATGAATACGC 58.866 45.455 0.00 0.00 0.00 4.42
2122 6486 5.364735 TCTGACTCATCTGAAGGCATGAATA 59.635 40.000 0.00 0.00 30.48 1.75
2137 6501 4.708909 TCAGATAGTGCTTGTCTGACTCAT 59.291 41.667 9.51 0.00 42.36 2.90
2224 6589 1.730612 GCGGTTACCAGTTTGTAGAGC 59.269 52.381 1.13 0.00 0.00 4.09
2258 6624 4.638865 CCGGGAACTAAATAAACCCTTGAG 59.361 45.833 0.00 0.00 38.51 3.02
2278 6644 4.561735 TTTGCTCAACTCTTTAAACCGG 57.438 40.909 0.00 0.00 0.00 5.28
2328 6695 6.017852 GTCAAGGAAGGTCAAACTGAGTAAAG 60.018 42.308 0.00 0.00 0.00 1.85
2394 6770 2.384828 AGACCAGCATACACACCGATA 58.615 47.619 0.00 0.00 0.00 2.92
2456 6834 4.499183 CAGGAATGTACTGGAACTCTGTC 58.501 47.826 0.00 0.00 32.38 3.51
2926 7365 3.815809 TGCCATGGTATTAGTTGCTACC 58.184 45.455 14.67 0.00 38.30 3.18
2929 7368 4.139786 CTGATGCCATGGTATTAGTTGCT 58.860 43.478 21.85 0.00 0.00 3.91
2930 7369 3.885297 ACTGATGCCATGGTATTAGTTGC 59.115 43.478 27.57 11.22 34.52 4.17
2931 7370 7.229306 ACATAACTGATGCCATGGTATTAGTTG 59.771 37.037 39.52 32.33 43.02 3.16
2932 7371 7.290061 ACATAACTGATGCCATGGTATTAGTT 58.710 34.615 37.14 37.14 44.37 2.24
2933 7372 6.841601 ACATAACTGATGCCATGGTATTAGT 58.158 36.000 27.57 27.57 38.31 2.24
2935 7374 6.836242 TGACATAACTGATGCCATGGTATTA 58.164 36.000 17.13 11.88 39.39 0.98
2936 7375 5.693961 TGACATAACTGATGCCATGGTATT 58.306 37.500 17.13 4.22 39.39 1.89
2937 7376 5.308976 TGACATAACTGATGCCATGGTAT 57.691 39.130 16.00 16.00 39.39 2.73
2938 7377 4.769345 TGACATAACTGATGCCATGGTA 57.231 40.909 14.67 9.89 39.39 3.25
2939 7378 3.650281 TGACATAACTGATGCCATGGT 57.350 42.857 14.67 0.00 39.39 3.55
2940 7379 5.311265 AGTATGACATAACTGATGCCATGG 58.689 41.667 7.63 7.63 38.88 3.66
2941 7380 7.967890 TTAGTATGACATAACTGATGCCATG 57.032 36.000 0.00 0.00 38.88 3.66
2942 7381 9.006839 CAATTAGTATGACATAACTGATGCCAT 57.993 33.333 0.00 0.00 41.15 4.40
2943 7382 7.992608 ACAATTAGTATGACATAACTGATGCCA 59.007 33.333 0.00 0.00 39.39 4.92
2944 7383 8.383318 ACAATTAGTATGACATAACTGATGCC 57.617 34.615 0.00 0.00 39.39 4.40
2945 7384 9.655769 CAACAATTAGTATGACATAACTGATGC 57.344 33.333 0.00 0.00 39.39 3.91
2957 7396 8.726988 GCCTGTAAAAGTCAACAATTAGTATGA 58.273 33.333 0.00 0.00 0.00 2.15
2984 7425 5.696724 AGGTCGACAAACTTCAACTGAATAG 59.303 40.000 18.91 0.00 33.01 1.73
3134 7704 1.004745 ACAACAAGACCTATGCCCCAG 59.995 52.381 0.00 0.00 0.00 4.45
3267 8485 1.042229 ATTGCTTTGCAGGCTGACAA 58.958 45.000 20.86 18.32 40.61 3.18
3454 8686 4.878397 GGTAGCCATATGCAGCTTATTAGG 59.122 45.833 11.11 0.21 44.83 2.69
3591 8824 4.773149 ACCCTCTACAAGTTGAAGACTAGG 59.227 45.833 10.54 7.09 37.72 3.02
3599 8832 7.571025 ACTTAAAAGAACCCTCTACAAGTTGA 58.429 34.615 10.54 0.00 29.41 3.18
3668 8901 4.341235 TCTGGATAGTAATGGAAGTCGTGG 59.659 45.833 0.00 0.00 0.00 4.94
3815 9058 5.594317 GCATGATGTTAGACCCCAATTAAGT 59.406 40.000 0.00 0.00 0.00 2.24
3968 9575 2.610438 ACAGGGGCTCAACAATTGAT 57.390 45.000 13.59 0.00 39.30 2.57
3986 9593 4.702131 AGAGACCAATTGCAAATGGACTAC 59.298 41.667 34.83 25.02 40.87 2.73
4121 9764 1.065564 GGGAGCAGCTCTTGAATCACT 60.066 52.381 21.99 0.00 0.00 3.41
4320 9968 4.891756 AGCCCACAAGGAAAATATCTGATG 59.108 41.667 0.00 0.00 38.24 3.07
4488 10146 9.352784 GCACATTTTATAGCATTGTAGTTGAAA 57.647 29.630 0.00 0.00 0.00 2.69
4619 10289 5.017294 TGAAAGTTTTAGGGCCAAAAGTG 57.983 39.130 6.18 0.00 32.65 3.16
5032 10720 1.376683 CAGCCCGAAATGAACCCGA 60.377 57.895 0.00 0.00 0.00 5.14
5155 10844 4.853924 AACAATGAGACACAATGTTCCC 57.146 40.909 1.01 0.00 45.80 3.97
5305 10996 7.516198 AATGATAGACCCAAGATATTTGTGC 57.484 36.000 0.00 0.00 0.00 4.57
5566 11261 9.950680 GAAAGAAATAAAGTCATGTTTGAGACA 57.049 29.630 0.00 0.00 43.71 3.41
5788 11699 7.495934 CCCGTTAAGATAGTTGTCTGATCAAAT 59.504 37.037 0.00 0.00 0.00 2.32
5962 11873 2.957402 TGAAGAGGGACATTGCAGTT 57.043 45.000 0.00 0.00 0.00 3.16
6609 12858 4.330074 CACAAGCCCAATTACTTCGACTAG 59.670 45.833 0.00 0.00 0.00 2.57
6733 12982 5.982465 TTTTTGCAAGCTAAAACATGGTC 57.018 34.783 9.67 0.00 0.00 4.02
6771 13025 0.776176 ATGGGGCTGGATTGAGGATC 59.224 55.000 0.00 0.00 0.00 3.36
6789 13043 0.399454 ACTGGCTCTCTGCACAACAT 59.601 50.000 0.00 0.00 45.15 2.71
7005 13296 7.560991 TCACGTATTTACTTAGGAGGGACAATA 59.439 37.037 0.00 0.00 0.00 1.90
7061 13352 2.109387 ACAACTGCGCCACGGTTA 59.891 55.556 4.18 0.00 46.47 2.85
7072 13363 7.085746 TGTTTCTTGCATGATTATCACAACTG 58.914 34.615 2.75 0.00 0.00 3.16
7102 13393 8.861086 TGTTTACTTGGGTAATCTTATGCAAAA 58.139 29.630 0.00 0.00 37.69 2.44
7105 13396 7.284489 GGATGTTTACTTGGGTAATCTTATGCA 59.716 37.037 0.00 0.00 37.69 3.96
7132 13423 7.001674 GGTGATTACCATTTCCATACCACATA 58.998 38.462 0.88 0.00 46.71 2.29
7170 13461 6.509418 TGTTTTGCAGAACACTACTTTTCT 57.491 33.333 18.10 0.00 34.77 2.52
7181 13472 8.801715 TCTTCATCTTAAATGTTTTGCAGAAC 57.198 30.769 12.97 12.97 0.00 3.01
7195 13486 9.958180 TCACTCATGGTATTTTCTTCATCTTAA 57.042 29.630 0.00 0.00 0.00 1.85
7200 13491 5.586243 CCGTCACTCATGGTATTTTCTTCAT 59.414 40.000 0.00 0.00 0.00 2.57
7202 13493 5.175859 TCCGTCACTCATGGTATTTTCTTC 58.824 41.667 0.00 0.00 32.08 2.87
7222 13513 1.033746 ATGATTTGTGCAGGCCTCCG 61.034 55.000 0.00 0.00 0.00 4.63
7224 13515 0.743097 GGATGATTTGTGCAGGCCTC 59.257 55.000 0.00 0.00 0.00 4.70
7229 13520 3.520290 AAGCATGGATGATTTGTGCAG 57.480 42.857 0.00 0.00 38.23 4.41
7254 13545 3.407424 TTGATAGGATCAGAATGGGCG 57.593 47.619 0.00 0.00 40.94 6.13
7255 13546 3.442977 GCATTGATAGGATCAGAATGGGC 59.557 47.826 0.00 0.00 40.94 5.36
7275 13568 2.203365 TTTTCGCGGAAAGGGGCA 60.203 55.556 8.90 0.00 32.93 5.36
7276 13569 2.566529 CTTTTCGCGGAAAGGGGC 59.433 61.111 28.71 0.00 32.93 5.80
7294 13587 6.371809 TGGACAAGACAATGTTGTAGTTTC 57.628 37.500 0.00 0.00 42.43 2.78
7354 13647 7.377766 TCCTACTTAATTTTGCTGATGTCAC 57.622 36.000 0.00 0.00 0.00 3.67
7376 13669 3.477530 ACTCTTACCTGTGCAGTTTTCC 58.522 45.455 0.00 0.00 0.00 3.13
7464 13757 2.704572 CCAGTTACTCCTTTGCAGAGG 58.295 52.381 17.22 17.22 35.58 3.69
7465 13758 2.079925 GCCAGTTACTCCTTTGCAGAG 58.920 52.381 0.00 0.00 37.39 3.35
7474 13767 3.437049 GTCAGATGTTTGCCAGTTACTCC 59.563 47.826 0.00 0.00 0.00 3.85
7477 13770 3.412386 AGGTCAGATGTTTGCCAGTTAC 58.588 45.455 0.00 0.00 0.00 2.50
7482 13775 1.699083 TCAGAGGTCAGATGTTTGCCA 59.301 47.619 0.00 0.00 0.00 4.92
7484 13777 3.406764 ACTTCAGAGGTCAGATGTTTGC 58.593 45.455 0.00 0.00 0.00 3.68
7519 13821 5.273674 TGATAGAGCTCTCAACTTCCATG 57.726 43.478 22.17 0.00 0.00 3.66
7580 13882 3.877508 GGAGGTTGTATGATTGGTAGTGC 59.122 47.826 0.00 0.00 0.00 4.40
7637 13949 1.270785 TGGATGTGCTCGCTTTCTTCA 60.271 47.619 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.