Multiple sequence alignment - TraesCS4A01G187300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G187300 chr4A 100.000 5545 0 0 1 5545 466570843 466576387 0.000000e+00 10240.0
1 TraesCS4A01G187300 chr4A 95.238 126 6 0 5420 5545 614876837 614876712 3.390000e-47 200.0
2 TraesCS4A01G187300 chr4A 92.913 127 8 1 5420 5545 740204377 740204503 3.410000e-42 183.0
3 TraesCS4A01G187300 chr4D 93.200 4338 167 54 875 5143 110115854 110111576 0.000000e+00 6259.0
4 TraesCS4A01G187300 chr4D 90.775 271 20 4 1 268 110116789 110116521 1.900000e-94 357.0
5 TraesCS4A01G187300 chr4D 92.339 248 4 7 5107 5339 110111576 110111329 6.880000e-89 339.0
6 TraesCS4A01G187300 chr4D 87.952 166 18 2 641 804 110116035 110115870 1.580000e-45 195.0
7 TraesCS4A01G187300 chr4D 93.519 108 7 0 1334 1441 360762929 360763036 1.600000e-35 161.0
8 TraesCS4A01G187300 chr4B 92.036 3792 201 38 1458 5206 171610065 171613798 0.000000e+00 5236.0
9 TraesCS4A01G187300 chr4B 88.000 450 15 10 875 1287 171609608 171610055 3.860000e-136 496.0
10 TraesCS4A01G187300 chr4B 83.178 321 18 16 65 377 171608959 171609251 1.530000e-65 261.0
11 TraesCS4A01G187300 chr4B 87.349 166 19 2 641 804 171609426 171609591 7.330000e-44 189.0
12 TraesCS4A01G187300 chr4B 89.091 110 5 1 5237 5339 171613981 171614090 4.510000e-26 130.0
13 TraesCS4A01G187300 chr4B 88.889 54 2 2 1 50 171608906 171608959 4.640000e-06 63.9
14 TraesCS4A01G187300 chr5D 95.238 126 6 0 5420 5545 447397220 447397345 3.390000e-47 200.0
15 TraesCS4A01G187300 chr5D 89.286 112 12 0 1333 1444 263142947 263142836 2.080000e-29 141.0
16 TraesCS4A01G187300 chr3D 92.913 127 8 1 5420 5545 56293103 56292977 3.410000e-42 183.0
17 TraesCS4A01G187300 chr3D 95.050 101 5 0 5445 5545 11986706 11986606 5.750000e-35 159.0
18 TraesCS4A01G187300 chr3D 89.474 114 10 2 1333 1445 607554350 607554238 5.790000e-30 143.0
19 TraesCS4A01G187300 chr3D 100.000 29 0 0 5341 5369 6061575 6061603 3.000000e-03 54.7
20 TraesCS4A01G187300 chr3D 100.000 29 0 0 5341 5369 6062354 6062382 3.000000e-03 54.7
21 TraesCS4A01G187300 chr2D 95.614 114 4 1 5432 5545 312459849 312459737 1.230000e-41 182.0
22 TraesCS4A01G187300 chr2D 95.122 41 2 0 435 475 426864573 426864533 1.290000e-06 65.8
23 TraesCS4A01G187300 chr1D 93.913 115 7 0 1331 1445 85196230 85196116 2.050000e-39 174.0
24 TraesCS4A01G187300 chr1D 89.286 112 11 1 1337 1448 482078274 482078164 7.490000e-29 139.0
25 TraesCS4A01G187300 chr1D 93.182 44 3 0 435 478 317998676 317998633 1.290000e-06 65.8
26 TraesCS4A01G187300 chr3A 91.339 127 10 1 5420 5545 646816868 646816994 7.390000e-39 172.0
27 TraesCS4A01G187300 chr7A 90.625 128 10 2 5420 5545 729313817 729313944 9.550000e-38 169.0
28 TraesCS4A01G187300 chr7B 89.474 133 7 3 5420 5545 702330364 702330496 1.600000e-35 161.0
29 TraesCS4A01G187300 chr7B 90.265 113 11 0 1334 1446 609294462 609294574 1.240000e-31 148.0
30 TraesCS4A01G187300 chr7B 95.122 41 2 0 436 476 504227434 504227394 1.290000e-06 65.8
31 TraesCS4A01G187300 chr6A 90.741 108 9 1 1338 1444 5223133 5223026 5.790000e-30 143.0
32 TraesCS4A01G187300 chr5B 89.381 113 12 0 1334 1446 24156 24268 5.790000e-30 143.0
33 TraesCS4A01G187300 chr5B 95.122 41 2 0 435 475 711245624 711245584 1.290000e-06 65.8
34 TraesCS4A01G187300 chr3B 95.745 47 1 1 435 480 377876892 377876938 2.140000e-09 75.0
35 TraesCS4A01G187300 chr3B 95.349 43 2 0 435 477 4263321 4263279 9.970000e-08 69.4
36 TraesCS4A01G187300 chr3B 95.349 43 2 0 435 477 5137605 5137563 9.970000e-08 69.4
37 TraesCS4A01G187300 chr6D 97.619 42 1 0 435 476 367006920 367006879 7.710000e-09 73.1
38 TraesCS4A01G187300 chr6D 90.566 53 3 2 435 485 446513237 446513289 9.970000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G187300 chr4A 466570843 466576387 5544 False 10240.00 10240 100.0000 1 5545 1 chr4A.!!$F1 5544
1 TraesCS4A01G187300 chr4D 110111329 110116789 5460 True 1787.50 6259 91.0665 1 5339 4 chr4D.!!$R1 5338
2 TraesCS4A01G187300 chr4B 171608906 171614090 5184 False 1062.65 5236 88.0905 1 5339 6 chr4B.!!$F1 5338

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
632 951 0.032678 CGATGCATACGGCCTCTTCT 59.967 55.000 0.00 0.00 43.89 2.85 F
1201 1561 0.170339 GCGCCCACCTCACATTTAAC 59.830 55.000 0.00 0.00 0.00 2.01 F
1679 2042 0.252696 TGTCTGGGGTCCATGCTAGT 60.253 55.000 0.00 0.00 30.82 2.57 F
2194 2565 0.535102 CTGCCTGTTTCCCTGTCGTT 60.535 55.000 0.00 0.00 0.00 3.85 F
2195 2566 0.759959 TGCCTGTTTCCCTGTCGTTA 59.240 50.000 0.00 0.00 0.00 3.18 F
2196 2567 1.349688 TGCCTGTTTCCCTGTCGTTAT 59.650 47.619 0.00 0.00 0.00 1.89 F
2197 2568 1.737793 GCCTGTTTCCCTGTCGTTATG 59.262 52.381 0.00 0.00 0.00 1.90 F
4133 4543 1.276705 TGTTGCTACCGAGGTAATGCA 59.723 47.619 10.87 10.87 32.45 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 2398 0.320073 CCTTTACGACAAGGGACGCA 60.320 55.000 8.92 0.0 39.95 5.24 R
2998 3402 0.099436 GAATGGAACTGACGGCATGC 59.901 55.000 9.90 9.9 0.00 4.06 R
3199 3604 1.075542 CATCAAACTCCGCACGCTTA 58.924 50.000 0.00 0.0 0.00 3.09 R
3661 4066 5.759059 TGATAGCTTTCCCTGATTCAATGT 58.241 37.500 0.00 0.0 0.00 2.71 R
3755 4165 6.043327 TCGAAATCATAAATGCGTAACAGG 57.957 37.500 0.00 0.0 0.00 4.00 R
4133 4543 6.054295 GTGGATTCAGTTCAGCATATTCTCT 58.946 40.000 0.00 0.0 0.00 3.10 R
4303 4715 4.394300 CAGTTGACAGGCTCTAATTCCAAG 59.606 45.833 0.00 0.0 0.00 3.61 R
5462 6088 0.035343 GGACTGGTGGCTAGGGTTTC 60.035 60.000 0.00 0.0 0.00 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 5.068198 TGCATAGGAAGAATTTCTTGATGGC 59.932 40.000 16.17 12.53 36.73 4.40
29 30 5.755813 CATAGGAAGAATTTCTTGATGGCG 58.244 41.667 16.17 0.00 36.73 5.69
50 55 0.618968 CTATAGGGCCTAGGCTGGGG 60.619 65.000 32.18 14.24 41.60 4.96
51 56 1.083974 TATAGGGCCTAGGCTGGGGA 61.084 60.000 32.18 14.29 41.60 4.81
52 57 2.408495 ATAGGGCCTAGGCTGGGGAG 62.408 65.000 32.18 0.00 41.60 4.30
53 58 4.499116 GGGCCTAGGCTGGGGAGA 62.499 72.222 32.18 0.00 41.60 3.71
54 59 2.122189 GGCCTAGGCTGGGGAGAT 60.122 66.667 32.18 0.00 41.60 2.75
70 78 3.994204 GAGATTCTCTCTCCGTTACCC 57.006 52.381 6.42 0.00 44.06 3.69
72 80 3.558033 AGATTCTCTCTCCGTTACCCTC 58.442 50.000 0.00 0.00 0.00 4.30
100 108 5.988287 TCTTGGCAAATCTTCCAAAGTTTT 58.012 33.333 0.00 0.00 41.35 2.43
101 109 7.118496 TCTTGGCAAATCTTCCAAAGTTTTA 57.882 32.000 0.00 0.00 41.35 1.52
164 172 3.124297 GCTTGAGAATTCTGACCAGTTCG 59.876 47.826 14.00 0.00 0.00 3.95
186 194 0.930726 TTCCTTCCTTTGGTGGGTGT 59.069 50.000 0.00 0.00 0.00 4.16
189 197 0.184933 CTTCCTTTGGTGGGTGTGGA 59.815 55.000 0.00 0.00 0.00 4.02
237 245 8.169977 AGTATTCAAATGCTCTGTTTCTTTCA 57.830 30.769 0.00 0.00 0.00 2.69
242 250 7.962917 TCAAATGCTCTGTTTCTTTCAAAAAC 58.037 30.769 0.00 0.00 37.18 2.43
286 294 5.343307 AAAAAGAATGGTCTGTTTGCAGT 57.657 34.783 0.00 0.00 39.45 4.40
287 295 3.996150 AAGAATGGTCTGTTTGCAGTG 57.004 42.857 0.00 0.00 43.05 3.66
346 604 3.138304 CAGTCCAGATCCAAAAACACGA 58.862 45.455 0.00 0.00 0.00 4.35
347 605 3.187227 CAGTCCAGATCCAAAAACACGAG 59.813 47.826 0.00 0.00 0.00 4.18
352 610 2.372172 AGATCCAAAAACACGAGGGTCT 59.628 45.455 0.00 0.00 36.80 3.85
353 611 2.721425 TCCAAAAACACGAGGGTCTT 57.279 45.000 0.00 0.00 0.00 3.01
354 612 3.842007 TCCAAAAACACGAGGGTCTTA 57.158 42.857 0.00 0.00 0.00 2.10
386 649 4.503714 TGACCTCCAGTTGATTATTCCC 57.496 45.455 0.00 0.00 0.00 3.97
400 663 2.597578 ATTCCCGTTTAACTTGGCCT 57.402 45.000 3.32 0.00 0.00 5.19
416 691 1.103803 GCCTTTCGGGGATTTTCTCC 58.896 55.000 0.00 0.00 44.11 3.71
417 692 1.615919 GCCTTTCGGGGATTTTCTCCA 60.616 52.381 0.00 0.00 46.98 3.86
418 693 2.369394 CCTTTCGGGGATTTTCTCCAG 58.631 52.381 0.00 0.00 46.98 3.86
419 694 2.369394 CTTTCGGGGATTTTCTCCAGG 58.631 52.381 0.00 0.00 46.98 4.45
420 695 1.663911 TTCGGGGATTTTCTCCAGGA 58.336 50.000 0.00 0.00 46.98 3.86
421 696 1.893315 TCGGGGATTTTCTCCAGGAT 58.107 50.000 0.00 0.00 46.98 3.24
422 697 1.768870 TCGGGGATTTTCTCCAGGATC 59.231 52.381 0.00 0.00 46.98 3.36
423 698 1.771255 CGGGGATTTTCTCCAGGATCT 59.229 52.381 0.00 0.00 46.98 2.75
424 699 2.173569 CGGGGATTTTCTCCAGGATCTT 59.826 50.000 0.00 0.00 46.98 2.40
425 700 3.560105 GGGGATTTTCTCCAGGATCTTG 58.440 50.000 0.00 0.00 46.98 3.02
426 701 3.053320 GGGGATTTTCTCCAGGATCTTGT 60.053 47.826 3.93 0.00 46.98 3.16
427 702 4.203226 GGGATTTTCTCCAGGATCTTGTC 58.797 47.826 3.93 0.00 46.98 3.18
428 703 4.080072 GGGATTTTCTCCAGGATCTTGTCT 60.080 45.833 3.93 0.00 46.98 3.41
429 704 5.131142 GGGATTTTCTCCAGGATCTTGTCTA 59.869 44.000 3.93 0.00 46.98 2.59
430 705 6.287525 GGATTTTCTCCAGGATCTTGTCTAG 58.712 44.000 3.93 0.00 44.26 2.43
431 706 6.126911 GGATTTTCTCCAGGATCTTGTCTAGT 60.127 42.308 3.93 0.00 44.26 2.57
432 707 7.070074 GGATTTTCTCCAGGATCTTGTCTAGTA 59.930 40.741 3.93 0.00 44.26 1.82
433 708 6.777213 TTTCTCCAGGATCTTGTCTAGTAC 57.223 41.667 3.93 0.00 0.00 2.73
434 709 5.718801 TCTCCAGGATCTTGTCTAGTACT 57.281 43.478 0.00 0.00 0.00 2.73
435 710 6.826632 TCTCCAGGATCTTGTCTAGTACTA 57.173 41.667 1.89 1.89 0.00 1.82
436 711 6.833041 TCTCCAGGATCTTGTCTAGTACTAG 58.167 44.000 21.87 21.87 32.84 2.57
437 712 6.387513 TCTCCAGGATCTTGTCTAGTACTAGT 59.612 42.308 25.58 8.73 33.29 2.57
438 713 6.358178 TCCAGGATCTTGTCTAGTACTAGTG 58.642 44.000 25.58 14.66 33.29 2.74
439 714 6.158169 TCCAGGATCTTGTCTAGTACTAGTGA 59.842 42.308 25.58 19.25 33.29 3.41
440 715 7.001674 CCAGGATCTTGTCTAGTACTAGTGAT 58.998 42.308 25.58 22.03 33.29 3.06
441 716 7.174253 CCAGGATCTTGTCTAGTACTAGTGATC 59.826 44.444 25.58 26.24 33.29 2.92
442 717 7.936847 CAGGATCTTGTCTAGTACTAGTGATCT 59.063 40.741 29.24 21.74 33.29 2.75
443 718 9.161572 AGGATCTTGTCTAGTACTAGTGATCTA 57.838 37.037 29.24 17.70 33.29 1.98
444 719 9.781633 GGATCTTGTCTAGTACTAGTGATCTAA 57.218 37.037 29.24 18.65 33.29 2.10
447 722 9.096160 TCTTGTCTAGTACTAGTGATCTAAACG 57.904 37.037 25.58 6.33 33.29 3.60
448 723 7.244166 TGTCTAGTACTAGTGATCTAAACGC 57.756 40.000 25.58 6.94 34.84 4.84
449 724 7.046652 TGTCTAGTACTAGTGATCTAAACGCT 58.953 38.462 25.58 0.00 34.84 5.07
450 725 7.224362 TGTCTAGTACTAGTGATCTAAACGCTC 59.776 40.741 25.58 0.00 34.84 5.03
451 726 7.439056 GTCTAGTACTAGTGATCTAAACGCTCT 59.561 40.741 25.58 0.00 34.84 4.09
452 727 7.986320 TCTAGTACTAGTGATCTAAACGCTCTT 59.014 37.037 25.58 0.00 34.84 2.85
453 728 9.258826 CTAGTACTAGTGATCTAAACGCTCTTA 57.741 37.037 20.01 0.00 0.00 2.10
454 729 7.918643 AGTACTAGTGATCTAAACGCTCTTAC 58.081 38.462 5.39 0.00 0.00 2.34
455 730 6.754702 ACTAGTGATCTAAACGCTCTTACA 57.245 37.500 0.00 0.00 0.00 2.41
456 731 7.336161 ACTAGTGATCTAAACGCTCTTACAT 57.664 36.000 0.00 0.00 0.00 2.29
457 732 7.773149 ACTAGTGATCTAAACGCTCTTACATT 58.227 34.615 0.00 0.00 0.00 2.71
458 733 8.251721 ACTAGTGATCTAAACGCTCTTACATTT 58.748 33.333 0.00 0.00 0.00 2.32
459 734 7.295952 AGTGATCTAAACGCTCTTACATTTG 57.704 36.000 0.00 0.00 0.00 2.32
460 735 6.874134 AGTGATCTAAACGCTCTTACATTTGT 59.126 34.615 0.00 0.00 0.00 2.83
461 736 7.387948 AGTGATCTAAACGCTCTTACATTTGTT 59.612 33.333 0.00 0.00 0.00 2.83
462 737 8.015658 GTGATCTAAACGCTCTTACATTTGTTT 58.984 33.333 0.00 0.00 34.32 2.83
463 738 9.210329 TGATCTAAACGCTCTTACATTTGTTTA 57.790 29.630 0.00 0.00 32.41 2.01
469 744 7.772332 ACGCTCTTACATTTGTTTATAGAGG 57.228 36.000 0.00 0.00 0.00 3.69
470 745 7.553334 ACGCTCTTACATTTGTTTATAGAGGA 58.447 34.615 0.00 0.00 0.00 3.71
471 746 8.038944 ACGCTCTTACATTTGTTTATAGAGGAA 58.961 33.333 0.00 0.00 0.00 3.36
472 747 8.543774 CGCTCTTACATTTGTTTATAGAGGAAG 58.456 37.037 0.00 0.00 0.00 3.46
491 766 6.990798 AGGAAGTACTAAACAACTCCACTAC 58.009 40.000 9.59 0.00 0.00 2.73
493 768 7.039853 AGGAAGTACTAAACAACTCCACTACTC 60.040 40.741 9.59 0.00 0.00 2.59
498 773 7.451501 ACTAAACAACTCCACTACTCTACTC 57.548 40.000 0.00 0.00 0.00 2.59
499 774 7.232910 ACTAAACAACTCCACTACTCTACTCT 58.767 38.462 0.00 0.00 0.00 3.24
500 775 5.968528 AACAACTCCACTACTCTACTCTG 57.031 43.478 0.00 0.00 0.00 3.35
501 776 5.244189 ACAACTCCACTACTCTACTCTGA 57.756 43.478 0.00 0.00 0.00 3.27
502 777 5.822204 ACAACTCCACTACTCTACTCTGAT 58.178 41.667 0.00 0.00 0.00 2.90
503 778 6.249951 ACAACTCCACTACTCTACTCTGATT 58.750 40.000 0.00 0.00 0.00 2.57
504 779 6.151985 ACAACTCCACTACTCTACTCTGATTG 59.848 42.308 0.00 0.00 0.00 2.67
505 780 6.068461 ACTCCACTACTCTACTCTGATTGA 57.932 41.667 0.00 0.00 0.00 2.57
506 781 5.883673 ACTCCACTACTCTACTCTGATTGAC 59.116 44.000 0.00 0.00 0.00 3.18
507 782 6.068461 TCCACTACTCTACTCTGATTGACT 57.932 41.667 0.00 0.00 0.00 3.41
509 784 6.375736 TCCACTACTCTACTCTGATTGACTTG 59.624 42.308 0.00 0.00 0.00 3.16
512 787 7.540400 CACTACTCTACTCTGATTGACTTGTTG 59.460 40.741 0.00 0.00 0.00 3.33
518 793 5.371526 ACTCTGATTGACTTGTTGACACAT 58.628 37.500 0.00 0.00 31.06 3.21
526 801 9.683069 GATTGACTTGTTGACACATCTTATTTT 57.317 29.630 0.00 0.00 31.06 1.82
548 867 1.359168 GGTTCAGTTCAGGGGTAGGT 58.641 55.000 0.00 0.00 0.00 3.08
549 868 2.543635 GGTTCAGTTCAGGGGTAGGTA 58.456 52.381 0.00 0.00 0.00 3.08
550 869 2.500504 GGTTCAGTTCAGGGGTAGGTAG 59.499 54.545 0.00 0.00 0.00 3.18
551 870 2.500504 GTTCAGTTCAGGGGTAGGTAGG 59.499 54.545 0.00 0.00 0.00 3.18
552 871 1.720533 TCAGTTCAGGGGTAGGTAGGT 59.279 52.381 0.00 0.00 0.00 3.08
554 873 1.435959 AGTTCAGGGGTAGGTAGGTGT 59.564 52.381 0.00 0.00 0.00 4.16
555 874 2.158050 AGTTCAGGGGTAGGTAGGTGTT 60.158 50.000 0.00 0.00 0.00 3.32
556 875 2.235650 GTTCAGGGGTAGGTAGGTGTTC 59.764 54.545 0.00 0.00 0.00 3.18
557 876 1.720533 TCAGGGGTAGGTAGGTGTTCT 59.279 52.381 0.00 0.00 0.00 3.01
558 877 2.113052 TCAGGGGTAGGTAGGTGTTCTT 59.887 50.000 0.00 0.00 0.00 2.52
559 878 2.500504 CAGGGGTAGGTAGGTGTTCTTC 59.499 54.545 0.00 0.00 0.00 2.87
560 879 2.386113 AGGGGTAGGTAGGTGTTCTTCT 59.614 50.000 0.00 0.00 0.00 2.85
561 880 3.179685 GGGGTAGGTAGGTGTTCTTCTT 58.820 50.000 0.00 0.00 0.00 2.52
562 881 3.586174 GGGGTAGGTAGGTGTTCTTCTTT 59.414 47.826 0.00 0.00 0.00 2.52
563 882 4.565028 GGGGTAGGTAGGTGTTCTTCTTTG 60.565 50.000 0.00 0.00 0.00 2.77
564 883 4.285260 GGGTAGGTAGGTGTTCTTCTTTGA 59.715 45.833 0.00 0.00 0.00 2.69
565 884 5.221783 GGGTAGGTAGGTGTTCTTCTTTGAA 60.222 44.000 0.00 0.00 0.00 2.69
566 885 5.699915 GGTAGGTAGGTGTTCTTCTTTGAAC 59.300 44.000 0.00 0.00 44.60 3.18
567 886 4.715713 AGGTAGGTGTTCTTCTTTGAACC 58.284 43.478 5.15 0.00 43.96 3.62
568 887 4.165372 AGGTAGGTGTTCTTCTTTGAACCA 59.835 41.667 5.15 0.00 43.96 3.67
570 889 5.535030 GGTAGGTGTTCTTCTTTGAACCATT 59.465 40.000 5.15 0.00 43.96 3.16
571 890 6.040504 GGTAGGTGTTCTTCTTTGAACCATTT 59.959 38.462 5.15 0.00 43.96 2.32
572 891 6.544928 AGGTGTTCTTCTTTGAACCATTTT 57.455 33.333 5.15 0.00 43.96 1.82
573 892 6.946340 AGGTGTTCTTCTTTGAACCATTTTT 58.054 32.000 5.15 0.00 43.96 1.94
595 914 2.973694 TTCGAAAAGGAGATACCCCG 57.026 50.000 0.00 0.00 40.05 5.73
596 915 1.117150 TCGAAAAGGAGATACCCCGG 58.883 55.000 0.00 0.00 40.05 5.73
597 916 0.532196 CGAAAAGGAGATACCCCGGC 60.532 60.000 0.00 0.00 40.05 6.13
598 917 0.179026 GAAAAGGAGATACCCCGGCC 60.179 60.000 0.00 0.00 40.05 6.13
599 918 0.623617 AAAAGGAGATACCCCGGCCT 60.624 55.000 0.00 0.00 40.05 5.19
600 919 1.054978 AAAGGAGATACCCCGGCCTC 61.055 60.000 0.00 0.00 40.05 4.70
601 920 1.962570 AAGGAGATACCCCGGCCTCT 61.963 60.000 0.00 0.00 40.05 3.69
602 921 2.210711 GGAGATACCCCGGCCTCTG 61.211 68.421 0.00 0.00 0.00 3.35
603 922 2.844839 AGATACCCCGGCCTCTGC 60.845 66.667 0.00 0.00 0.00 4.26
604 923 3.161450 GATACCCCGGCCTCTGCA 61.161 66.667 0.00 0.00 40.13 4.41
605 924 3.462199 GATACCCCGGCCTCTGCAC 62.462 68.421 0.00 0.00 40.13 4.57
608 927 4.864334 CCCCGGCCTCTGCACATC 62.864 72.222 0.00 0.00 40.13 3.06
609 928 4.100084 CCCGGCCTCTGCACATCA 62.100 66.667 0.00 0.00 40.13 3.07
610 929 2.513204 CCGGCCTCTGCACATCAG 60.513 66.667 0.00 0.00 44.21 2.90
625 944 1.193203 CATCAGAACGATGCATACGGC 59.807 52.381 18.34 11.86 44.95 5.68
626 945 0.529773 TCAGAACGATGCATACGGCC 60.530 55.000 18.34 0.00 43.89 6.13
627 946 0.530650 CAGAACGATGCATACGGCCT 60.531 55.000 18.34 12.91 43.89 5.19
628 947 0.249489 AGAACGATGCATACGGCCTC 60.249 55.000 18.34 12.83 43.89 4.70
629 948 0.249489 GAACGATGCATACGGCCTCT 60.249 55.000 18.34 0.00 43.89 3.69
630 949 0.178068 AACGATGCATACGGCCTCTT 59.822 50.000 18.34 5.11 43.89 2.85
631 950 0.249489 ACGATGCATACGGCCTCTTC 60.249 55.000 18.34 0.00 43.89 2.87
632 951 0.032678 CGATGCATACGGCCTCTTCT 59.967 55.000 0.00 0.00 43.89 2.85
633 952 1.539065 CGATGCATACGGCCTCTTCTT 60.539 52.381 0.00 0.00 43.89 2.52
634 953 2.565841 GATGCATACGGCCTCTTCTTT 58.434 47.619 0.00 0.00 43.89 2.52
635 954 2.024176 TGCATACGGCCTCTTCTTTC 57.976 50.000 0.00 0.00 43.89 2.62
636 955 0.931005 GCATACGGCCTCTTCTTTCG 59.069 55.000 0.00 0.00 36.11 3.46
637 956 1.470979 GCATACGGCCTCTTCTTTCGA 60.471 52.381 0.00 0.00 36.11 3.71
638 957 2.888594 CATACGGCCTCTTCTTTCGAA 58.111 47.619 0.00 0.00 0.00 3.71
639 958 2.358939 TACGGCCTCTTCTTTCGAAC 57.641 50.000 0.00 0.00 0.00 3.95
640 959 0.320508 ACGGCCTCTTCTTTCGAACC 60.321 55.000 0.00 0.00 0.00 3.62
641 960 0.320421 CGGCCTCTTCTTTCGAACCA 60.320 55.000 0.00 0.00 0.00 3.67
642 961 1.676014 CGGCCTCTTCTTTCGAACCAT 60.676 52.381 0.00 0.00 0.00 3.55
643 962 1.740025 GGCCTCTTCTTTCGAACCATG 59.260 52.381 0.00 0.00 0.00 3.66
644 963 1.131315 GCCTCTTCTTTCGAACCATGC 59.869 52.381 0.00 0.00 0.00 4.06
645 964 2.426522 CCTCTTCTTTCGAACCATGCA 58.573 47.619 0.00 0.00 0.00 3.96
646 965 3.012518 CCTCTTCTTTCGAACCATGCAT 58.987 45.455 0.00 0.00 0.00 3.96
647 966 3.181503 CCTCTTCTTTCGAACCATGCATG 60.182 47.826 20.19 20.19 0.00 4.06
648 967 3.411446 TCTTCTTTCGAACCATGCATGT 58.589 40.909 24.58 7.78 0.00 3.21
653 972 4.517075 TCTTTCGAACCATGCATGTAACAA 59.483 37.500 24.58 8.33 0.00 2.83
654 973 3.822594 TCGAACCATGCATGTAACAAC 57.177 42.857 24.58 9.13 0.00 3.32
655 974 2.486203 TCGAACCATGCATGTAACAACC 59.514 45.455 24.58 6.24 0.00 3.77
689 1008 2.624766 CGAAGTGCAGTTTTGTGTACG 58.375 47.619 8.48 1.54 38.03 3.67
719 1038 0.325933 CATGGTCTGCTGGTTCCTCA 59.674 55.000 0.00 0.00 0.00 3.86
724 1043 1.194781 TCTGCTGGTTCCTCACTCCC 61.195 60.000 0.00 0.00 0.00 4.30
778 1098 1.682005 CATGGCCATGGGTCCGTTT 60.682 57.895 34.31 0.00 35.24 3.60
783 1103 1.883021 CCATGGGTCCGTTTTCTGC 59.117 57.895 2.85 0.00 0.00 4.26
792 1112 1.369209 CGTTTTCTGCAGTGCCACG 60.369 57.895 14.67 13.79 0.00 4.94
804 1124 3.119291 CAGTGCCACGAGATGATAACTC 58.881 50.000 0.00 0.00 0.00 3.01
806 1126 3.067461 AGTGCCACGAGATGATAACTCTC 59.933 47.826 0.00 0.00 36.58 3.20
808 1128 3.316588 TGCCACGAGATGATAACTCTCTC 59.683 47.826 0.00 0.00 37.57 3.20
812 1132 6.568869 CCACGAGATGATAACTCTCTCTTTT 58.431 40.000 0.00 0.00 37.57 2.27
843 1163 9.607988 TTTGGATATATCTGTTCATTAACGTGT 57.392 29.630 12.42 0.00 38.53 4.49
845 1165 9.908152 TGGATATATCTGTTCATTAACGTGTAG 57.092 33.333 12.42 0.00 38.53 2.74
846 1166 9.909644 GGATATATCTGTTCATTAACGTGTAGT 57.090 33.333 12.42 0.00 38.53 2.73
851 1171 7.627585 TCTGTTCATTAACGTGTAGTACAAC 57.372 36.000 4.11 0.00 38.53 3.32
852 1172 6.642131 TCTGTTCATTAACGTGTAGTACAACC 59.358 38.462 4.11 0.00 38.53 3.77
853 1173 6.279123 TGTTCATTAACGTGTAGTACAACCA 58.721 36.000 4.11 0.00 38.53 3.67
854 1174 6.760298 TGTTCATTAACGTGTAGTACAACCAA 59.240 34.615 4.11 0.00 38.53 3.67
855 1175 7.042590 TGTTCATTAACGTGTAGTACAACCAAG 60.043 37.037 4.11 0.00 38.53 3.61
856 1176 5.927689 TCATTAACGTGTAGTACAACCAAGG 59.072 40.000 4.11 0.00 0.00 3.61
857 1177 3.825143 AACGTGTAGTACAACCAAGGT 57.175 42.857 4.11 0.00 0.00 3.50
858 1178 3.102052 ACGTGTAGTACAACCAAGGTG 57.898 47.619 4.11 0.00 0.00 4.00
859 1179 2.694628 ACGTGTAGTACAACCAAGGTGA 59.305 45.455 4.11 0.00 0.00 4.02
860 1180 3.243636 ACGTGTAGTACAACCAAGGTGAG 60.244 47.826 4.11 0.00 0.00 3.51
861 1181 3.005050 CGTGTAGTACAACCAAGGTGAGA 59.995 47.826 4.11 0.00 0.00 3.27
862 1182 4.500205 CGTGTAGTACAACCAAGGTGAGAA 60.500 45.833 4.11 0.00 0.00 2.87
863 1183 5.362263 GTGTAGTACAACCAAGGTGAGAAA 58.638 41.667 4.11 0.00 0.00 2.52
864 1184 5.818857 GTGTAGTACAACCAAGGTGAGAAAA 59.181 40.000 4.11 0.00 0.00 2.29
865 1185 6.316890 GTGTAGTACAACCAAGGTGAGAAAAA 59.683 38.462 4.11 0.00 0.00 1.94
891 1211 1.090052 GCCCGTCCTCATCTTTTCCG 61.090 60.000 0.00 0.00 0.00 4.30
906 1226 3.380479 TTTCCGTGTCTCAACTGTAGG 57.620 47.619 0.00 0.00 0.00 3.18
915 1235 4.080807 TGTCTCAACTGTAGGTTTTCCACA 60.081 41.667 0.00 0.00 43.73 4.17
917 1237 4.080807 TCTCAACTGTAGGTTTTCCACACA 60.081 41.667 0.00 0.00 43.73 3.72
944 1264 3.492311 AAACAAATTGGCGGCGCGT 62.492 52.632 26.95 14.12 0.00 6.01
1182 1542 0.962855 TCGAGCAGGTCACTCTCCAG 60.963 60.000 0.00 0.00 31.71 3.86
1199 1559 0.676466 CAGCGCCCACCTCACATTTA 60.676 55.000 2.29 0.00 0.00 1.40
1201 1561 0.170339 GCGCCCACCTCACATTTAAC 59.830 55.000 0.00 0.00 0.00 2.01
1203 1563 1.613255 CGCCCACCTCACATTTAACCT 60.613 52.381 0.00 0.00 0.00 3.50
1205 1565 2.231235 GCCCACCTCACATTTAACCTTG 59.769 50.000 0.00 0.00 0.00 3.61
1227 1587 3.311871 GTGTCATGCTCCTCAATCATCAC 59.688 47.826 0.00 0.00 0.00 3.06
1238 1598 6.176183 TCCTCAATCATCACTTCTTCTTTCC 58.824 40.000 0.00 0.00 0.00 3.13
1257 1617 7.161404 TCTTTCCGGTCATATTTCATATCCAG 58.839 38.462 0.00 0.00 0.00 3.86
1259 1619 6.037786 TCCGGTCATATTTCATATCCAGTC 57.962 41.667 0.00 0.00 0.00 3.51
1299 1659 0.307760 CCCCATCGCTGTATTTTCGC 59.692 55.000 0.00 0.00 0.00 4.70
1310 1670 4.436317 GCTGTATTTTCGCGGTACAAATCA 60.436 41.667 6.13 6.23 0.00 2.57
1313 1673 0.800012 TTTCGCGGTACAAATCAGGC 59.200 50.000 6.13 0.00 0.00 4.85
1333 1693 2.807837 GCTGCCACTTTTGCCTGAATTT 60.808 45.455 0.00 0.00 0.00 1.82
1345 1705 3.454812 TGCCTGAATTTAGTACTCCCTCC 59.545 47.826 0.00 0.00 0.00 4.30
1346 1706 3.492829 GCCTGAATTTAGTACTCCCTCCG 60.493 52.174 0.00 0.00 0.00 4.63
1363 1723 3.626217 CCTCCGTTCACTTTTATAAGGCC 59.374 47.826 0.00 0.00 35.61 5.19
1364 1724 4.514401 CTCCGTTCACTTTTATAAGGCCT 58.486 43.478 0.00 0.00 35.61 5.19
1383 1743 3.126000 GCCTTGTAGACATTTCAGACAGC 59.874 47.826 0.00 0.00 0.00 4.40
1393 1753 1.090728 TTCAGACAGCGTGCAAAACA 58.909 45.000 0.00 0.00 0.00 2.83
1398 1758 1.356270 CAGCGTGCAAAACAGCTCA 59.644 52.632 0.00 0.00 36.80 4.26
1405 1765 3.551082 CGTGCAAAACAGCTCAATTTCAA 59.449 39.130 0.00 0.00 34.99 2.69
1411 1771 6.652245 CAAAACAGCTCAATTTCAATTGTCC 58.348 36.000 5.13 5.02 44.66 4.02
1414 1774 4.083110 ACAGCTCAATTTCAATTGTCCGAG 60.083 41.667 5.13 6.97 44.66 4.63
1433 1793 6.033302 GTCCGAGACGACTTATAAAAGTGAAC 59.967 42.308 0.00 0.00 46.09 3.18
1441 1801 6.117975 ACTTATAAAAGTGAACGGAGGGAA 57.882 37.500 0.00 0.00 44.40 3.97
1445 1805 6.997239 ATAAAAGTGAACGGAGGGAATAAC 57.003 37.500 0.00 0.00 0.00 1.89
1446 1806 4.635699 AAAGTGAACGGAGGGAATAACT 57.364 40.909 0.00 0.00 0.00 2.24
1447 1807 4.635699 AAGTGAACGGAGGGAATAACTT 57.364 40.909 0.00 0.00 0.00 2.66
1448 1808 4.635699 AGTGAACGGAGGGAATAACTTT 57.364 40.909 0.00 0.00 0.00 2.66
1449 1809 4.981812 AGTGAACGGAGGGAATAACTTTT 58.018 39.130 0.00 0.00 0.00 2.27
1450 1810 4.760204 AGTGAACGGAGGGAATAACTTTTG 59.240 41.667 0.00 0.00 0.00 2.44
1451 1811 4.758165 GTGAACGGAGGGAATAACTTTTGA 59.242 41.667 0.00 0.00 0.00 2.69
1452 1812 4.758165 TGAACGGAGGGAATAACTTTTGAC 59.242 41.667 0.00 0.00 0.00 3.18
1453 1813 3.332034 ACGGAGGGAATAACTTTTGACG 58.668 45.455 0.00 0.00 0.00 4.35
1454 1814 2.676342 CGGAGGGAATAACTTTTGACGG 59.324 50.000 0.00 0.00 0.00 4.79
1455 1815 2.422479 GGAGGGAATAACTTTTGACGGC 59.578 50.000 0.00 0.00 0.00 5.68
1456 1816 3.078837 GAGGGAATAACTTTTGACGGCA 58.921 45.455 0.00 0.00 0.00 5.69
1461 1821 5.286438 GGAATAACTTTTGACGGCACTTTT 58.714 37.500 0.00 0.00 0.00 2.27
1490 1850 6.486253 TGTCTTTTGCTGATGATGAGTAAC 57.514 37.500 0.00 0.00 0.00 2.50
1491 1851 6.233434 TGTCTTTTGCTGATGATGAGTAACT 58.767 36.000 0.00 0.00 0.00 2.24
1492 1852 7.386059 TGTCTTTTGCTGATGATGAGTAACTA 58.614 34.615 0.00 0.00 0.00 2.24
1493 1853 7.877612 TGTCTTTTGCTGATGATGAGTAACTAA 59.122 33.333 0.00 0.00 0.00 2.24
1495 1855 8.097038 TCTTTTGCTGATGATGAGTAACTAACT 58.903 33.333 0.00 0.00 42.80 2.24
1496 1856 9.371136 CTTTTGCTGATGATGAGTAACTAACTA 57.629 33.333 0.00 0.00 39.07 2.24
1675 2038 1.064758 TGTTATGTCTGGGGTCCATGC 60.065 52.381 0.00 0.00 30.82 4.06
1676 2039 1.212935 GTTATGTCTGGGGTCCATGCT 59.787 52.381 0.00 0.00 30.82 3.79
1677 2040 2.438021 GTTATGTCTGGGGTCCATGCTA 59.562 50.000 0.00 0.00 30.82 3.49
1678 2041 1.135094 ATGTCTGGGGTCCATGCTAG 58.865 55.000 0.00 0.00 30.82 3.42
1679 2042 0.252696 TGTCTGGGGTCCATGCTAGT 60.253 55.000 0.00 0.00 30.82 2.57
1696 2063 7.653713 CCATGCTAGTACAATACTACTCAAAGG 59.346 40.741 0.00 0.00 40.14 3.11
1735 2102 4.032960 TCATGCACCTCAACCATAAAGT 57.967 40.909 0.00 0.00 0.00 2.66
1935 2306 6.104146 TGTAAGTGATGTGCTACAACCTAA 57.896 37.500 0.00 0.00 0.00 2.69
1995 2366 4.826733 TCAGCAAACACAGGATTACAACAT 59.173 37.500 0.00 0.00 0.00 2.71
2027 2398 7.618502 TGTTAATTATGTGCTGACGGTTATT 57.381 32.000 0.00 0.00 0.00 1.40
2054 2425 3.499537 CCCTTGTCGTAAAGGTTAACCAC 59.500 47.826 26.26 14.59 44.58 4.16
2097 2468 2.559440 CAAGGAGATACTTCCAGCAGC 58.441 52.381 0.00 0.00 39.84 5.25
2167 2538 5.415221 CGATTTAAAAGTGAGCTCCTCTCT 58.585 41.667 12.15 1.67 42.38 3.10
2172 2543 5.596836 AAAAGTGAGCTCCTCTCTATCTG 57.403 43.478 12.15 0.00 42.38 2.90
2185 2556 2.935201 CTCTATCTGTGCTGCCTGTTTC 59.065 50.000 0.00 0.00 0.00 2.78
2186 2557 2.012673 CTATCTGTGCTGCCTGTTTCC 58.987 52.381 0.00 0.00 0.00 3.13
2188 2559 1.228367 CTGTGCTGCCTGTTTCCCT 60.228 57.895 0.00 0.00 0.00 4.20
2189 2560 1.521450 CTGTGCTGCCTGTTTCCCTG 61.521 60.000 0.00 0.00 0.00 4.45
2190 2561 1.529244 GTGCTGCCTGTTTCCCTGT 60.529 57.895 0.00 0.00 0.00 4.00
2191 2562 1.228245 TGCTGCCTGTTTCCCTGTC 60.228 57.895 0.00 0.00 0.00 3.51
2192 2563 2.328099 GCTGCCTGTTTCCCTGTCG 61.328 63.158 0.00 0.00 0.00 4.35
2193 2564 1.071471 CTGCCTGTTTCCCTGTCGT 59.929 57.895 0.00 0.00 0.00 4.34
2194 2565 0.535102 CTGCCTGTTTCCCTGTCGTT 60.535 55.000 0.00 0.00 0.00 3.85
2195 2566 0.759959 TGCCTGTTTCCCTGTCGTTA 59.240 50.000 0.00 0.00 0.00 3.18
2196 2567 1.349688 TGCCTGTTTCCCTGTCGTTAT 59.650 47.619 0.00 0.00 0.00 1.89
2197 2568 1.737793 GCCTGTTTCCCTGTCGTTATG 59.262 52.381 0.00 0.00 0.00 1.90
2198 2569 2.614481 GCCTGTTTCCCTGTCGTTATGA 60.614 50.000 0.00 0.00 0.00 2.15
2201 2572 4.700213 CCTGTTTCCCTGTCGTTATGAAAT 59.300 41.667 0.00 0.00 0.00 2.17
2202 2573 5.391950 CCTGTTTCCCTGTCGTTATGAAATG 60.392 44.000 0.00 0.00 0.00 2.32
2203 2574 5.067273 TGTTTCCCTGTCGTTATGAAATGT 58.933 37.500 0.00 0.00 0.00 2.71
2204 2575 5.049060 TGTTTCCCTGTCGTTATGAAATGTG 60.049 40.000 0.00 0.00 0.00 3.21
2206 2577 4.900684 TCCCTGTCGTTATGAAATGTGAA 58.099 39.130 0.00 0.00 0.00 3.18
2207 2578 4.693566 TCCCTGTCGTTATGAAATGTGAAC 59.306 41.667 0.00 0.00 0.00 3.18
2215 2598 6.019152 CGTTATGAAATGTGAACCTAAACCG 58.981 40.000 0.00 0.00 0.00 4.44
2218 2601 6.642707 ATGAAATGTGAACCTAAACCGAAA 57.357 33.333 0.00 0.00 0.00 3.46
2237 2620 5.163513 CGAAATACTTGCAGCCAGAAAATT 58.836 37.500 0.00 0.00 0.00 1.82
2324 2707 5.820947 CAGCTCAAGGTACGGGTTTATTATT 59.179 40.000 0.00 0.00 0.00 1.40
2363 2751 6.496338 AAGTTATCATGGAAGTTTTCGGAC 57.504 37.500 0.00 0.00 0.00 4.79
2365 2753 6.942976 AGTTATCATGGAAGTTTTCGGACTA 58.057 36.000 0.00 0.00 0.00 2.59
2366 2754 7.391620 AGTTATCATGGAAGTTTTCGGACTAA 58.608 34.615 0.00 0.00 0.00 2.24
2567 2957 7.057894 TGTAGAAACTGGACAACCAATAGTTT 58.942 34.615 0.00 0.00 46.32 2.66
2932 3335 4.464951 TCACGGTATGGTAGAACACAAGAT 59.535 41.667 0.00 0.00 0.00 2.40
2986 3390 2.679837 CCTCACACAATGCATCCAGTAC 59.320 50.000 0.00 0.00 0.00 2.73
2998 3402 3.384668 CATCCAGTACGGTTGCAGATAG 58.615 50.000 4.11 0.00 35.57 2.08
3044 3448 6.994496 TCAGCCTATCAATATTCCAAGTTCTG 59.006 38.462 0.00 0.00 0.00 3.02
3199 3604 5.946377 GGATGAGTGGTTCAAGAAAGGTTAT 59.054 40.000 0.00 0.00 39.77 1.89
3536 3941 8.695456 CCTAATAGCAACATAAAACTTGGGAAT 58.305 33.333 0.00 0.00 0.00 3.01
3563 3968 2.264813 TGCGCGATTACTTAACTCACC 58.735 47.619 12.10 0.00 0.00 4.02
3573 3978 8.723311 CGATTACTTAACTCACCATGGTTTTAA 58.277 33.333 16.84 16.80 0.00 1.52
3576 3981 7.891498 ACTTAACTCACCATGGTTTTAAAGT 57.109 32.000 16.84 17.27 0.00 2.66
3578 3983 8.755028 ACTTAACTCACCATGGTTTTAAAGTTT 58.245 29.630 16.84 2.81 0.00 2.66
3623 4028 7.604549 TCATGTGTGAAATATGCACTTGATTT 58.395 30.769 9.56 0.00 40.16 2.17
3624 4029 8.089597 TCATGTGTGAAATATGCACTTGATTTT 58.910 29.630 9.56 0.00 40.16 1.82
3625 4030 9.356433 CATGTGTGAAATATGCACTTGATTTTA 57.644 29.630 9.56 0.00 39.25 1.52
3627 4032 9.926158 TGTGTGAAATATGCACTTGATTTTATT 57.074 25.926 9.56 0.00 37.18 1.40
3660 4065 8.927675 ATCTCTAATTCGGTATCTCAGTTAGT 57.072 34.615 0.00 0.00 0.00 2.24
3672 4077 9.469807 GGTATCTCAGTTAGTACATTGAATCAG 57.530 37.037 0.00 0.00 0.00 2.90
3673 4078 9.469807 GTATCTCAGTTAGTACATTGAATCAGG 57.530 37.037 0.00 0.00 0.00 3.86
3680 4085 5.184892 AGTACATTGAATCAGGGAAAGCT 57.815 39.130 0.00 0.00 0.00 3.74
3682 4087 6.904626 AGTACATTGAATCAGGGAAAGCTAT 58.095 36.000 0.00 0.00 0.00 2.97
3755 4165 7.076842 TCACTTAGAGCTTTATGCACATTTC 57.923 36.000 0.00 0.00 45.94 2.17
3781 4191 7.643764 CCTGTTACGCATTTATGATTTCGAAAT 59.356 33.333 22.93 22.93 0.00 2.17
3974 4384 4.454504 AGCTTGGTTTAATAACAGTCCACG 59.545 41.667 0.00 0.00 35.92 4.94
4133 4543 1.276705 TGTTGCTACCGAGGTAATGCA 59.723 47.619 10.87 10.87 32.45 3.96
4161 4571 4.778534 ATGCTGAACTGAATCCACTTTG 57.221 40.909 0.00 0.00 0.00 2.77
4287 4697 8.379457 ACACTCTAGAATTTCACAAGGTAAAC 57.621 34.615 0.00 0.00 0.00 2.01
4351 4763 0.901827 TGCACCGATTCCTGCTTCTA 59.098 50.000 0.00 0.00 34.29 2.10
4356 4768 1.134367 CCGATTCCTGCTTCTACGACA 59.866 52.381 0.00 0.00 0.00 4.35
4375 4787 4.023622 CGACATCAGTAATCTGGACTCGAT 60.024 45.833 0.00 0.00 41.59 3.59
4384 4796 3.081710 TCTGGACTCGATGAGTTACCA 57.918 47.619 0.38 4.35 43.53 3.25
4400 4812 7.001674 TGAGTTACCAGGATTGTAAATTGTGT 58.998 34.615 0.00 0.00 30.52 3.72
4403 4815 8.700973 AGTTACCAGGATTGTAAATTGTGTTTT 58.299 29.630 0.00 0.00 30.52 2.43
4404 4816 8.760569 GTTACCAGGATTGTAAATTGTGTTTTG 58.239 33.333 0.00 0.00 30.52 2.44
4405 4817 7.118496 ACCAGGATTGTAAATTGTGTTTTGA 57.882 32.000 0.00 0.00 0.00 2.69
4409 4821 7.382218 CAGGATTGTAAATTGTGTTTTGACCTC 59.618 37.037 0.00 0.00 0.00 3.85
4432 4844 2.472909 CGCCTTTCCCTCGCCAATC 61.473 63.158 0.00 0.00 0.00 2.67
4441 4853 1.414181 CCCTCGCCAATCTGTACTGAT 59.586 52.381 9.28 9.28 0.00 2.90
4444 4856 4.240888 CCTCGCCAATCTGTACTGATATG 58.759 47.826 14.80 13.83 0.00 1.78
4643 5056 6.127647 GCTGGATCAAGATAAATTGTTCACCA 60.128 38.462 0.00 0.00 32.77 4.17
4667 5080 6.540914 CACATTTTGTAAGTACCGGTGGATAT 59.459 38.462 19.93 1.09 0.00 1.63
4735 5148 4.758674 TGCATTTTGAGAGACTTCTTGGAG 59.241 41.667 0.00 0.00 32.53 3.86
4738 5151 4.630644 TTTGAGAGACTTCTTGGAGCAT 57.369 40.909 0.00 0.00 32.53 3.79
4754 5167 4.340666 TGGAGCATTTTAAGTCAAGCACAA 59.659 37.500 0.00 0.00 0.00 3.33
4769 5182 4.853924 AGCACAATCAAGTAGGTTTTGG 57.146 40.909 0.00 0.00 0.00 3.28
4871 5287 3.555956 AGCCGAATATGCTTGTAAACTCG 59.444 43.478 0.00 0.00 34.87 4.18
4874 5290 4.263800 CGAATATGCTTGTAAACTCGCAC 58.736 43.478 0.00 0.00 34.93 5.34
4921 5341 6.071447 CCATTGTAAATTGTGAGACCATGGAA 60.071 38.462 21.47 0.30 37.31 3.53
4999 5419 5.807011 CAGAACTGAAGGGTGAAACAAAAAG 59.193 40.000 0.00 0.00 39.98 2.27
5069 5489 3.288092 GTCCTTGTCCTTGTTTCCTTGT 58.712 45.455 0.00 0.00 0.00 3.16
5188 5644 2.353889 GCAACATGCAGTGTGAGATAGG 59.646 50.000 0.00 0.00 44.26 2.57
5241 5821 1.737838 TTGGGTTCATGCTCATCGTC 58.262 50.000 0.00 0.00 0.00 4.20
5323 5949 7.606839 GGTTTTGCCTATGAAGACTAGTAAACT 59.393 37.037 0.00 0.00 0.00 2.66
5339 5965 1.331214 AACTCAAGTTGCATGGTGGG 58.669 50.000 0.00 0.00 36.80 4.61
5340 5966 0.478072 ACTCAAGTTGCATGGTGGGA 59.522 50.000 0.00 0.00 0.00 4.37
5341 5967 1.133513 ACTCAAGTTGCATGGTGGGAA 60.134 47.619 0.00 0.00 0.00 3.97
5342 5968 2.173519 CTCAAGTTGCATGGTGGGAAT 58.826 47.619 0.00 0.00 0.00 3.01
5343 5969 2.165030 CTCAAGTTGCATGGTGGGAATC 59.835 50.000 0.00 0.00 0.00 2.52
5344 5970 1.205417 CAAGTTGCATGGTGGGAATCC 59.795 52.381 0.00 0.00 0.00 3.01
5345 5971 0.324645 AGTTGCATGGTGGGAATCCC 60.325 55.000 12.39 12.39 45.71 3.85
5370 5996 2.781681 GAACCGATCCAAAGAGGGAA 57.218 50.000 0.00 0.00 41.12 3.97
5371 5997 3.067684 GAACCGATCCAAAGAGGGAAA 57.932 47.619 0.00 0.00 41.12 3.13
5372 5998 2.789409 ACCGATCCAAAGAGGGAAAG 57.211 50.000 0.00 0.00 41.12 2.62
5373 5999 2.266279 ACCGATCCAAAGAGGGAAAGA 58.734 47.619 0.00 0.00 41.12 2.52
5374 6000 2.237392 ACCGATCCAAAGAGGGAAAGAG 59.763 50.000 0.00 0.00 41.12 2.85
5375 6001 2.420687 CCGATCCAAAGAGGGAAAGAGG 60.421 54.545 0.00 0.00 41.12 3.69
5376 6002 2.420687 CGATCCAAAGAGGGAAAGAGGG 60.421 54.545 0.00 0.00 41.12 4.30
5377 6003 1.372501 TCCAAAGAGGGAAAGAGGGG 58.627 55.000 0.00 0.00 38.24 4.79
5378 6004 0.332972 CCAAAGAGGGAAAGAGGGGG 59.667 60.000 0.00 0.00 0.00 5.40
5392 6018 4.561155 GGGGGAGTGGAGAACTGA 57.439 61.111 0.00 0.00 40.07 3.41
5393 6019 2.773458 GGGGGAGTGGAGAACTGAA 58.227 57.895 0.00 0.00 40.07 3.02
5394 6020 1.064825 GGGGGAGTGGAGAACTGAAA 58.935 55.000 0.00 0.00 40.07 2.69
5395 6021 1.003696 GGGGGAGTGGAGAACTGAAAG 59.996 57.143 0.00 0.00 40.07 2.62
5408 6034 0.868406 CTGAAAGTGGAGTGAACGGC 59.132 55.000 0.00 0.00 0.00 5.68
5409 6035 0.534203 TGAAAGTGGAGTGAACGGCC 60.534 55.000 0.00 0.00 0.00 6.13
5410 6036 1.228154 AAAGTGGAGTGAACGGCCC 60.228 57.895 0.00 0.00 0.00 5.80
5411 6037 1.990160 AAAGTGGAGTGAACGGCCCA 61.990 55.000 0.00 0.00 0.00 5.36
5412 6038 2.358737 GTGGAGTGAACGGCCCAG 60.359 66.667 0.00 0.00 0.00 4.45
5413 6039 3.636231 TGGAGTGAACGGCCCAGG 61.636 66.667 0.00 0.00 0.00 4.45
5414 6040 3.319198 GGAGTGAACGGCCCAGGA 61.319 66.667 0.00 0.00 0.00 3.86
5415 6041 2.047179 GAGTGAACGGCCCAGGAC 60.047 66.667 0.00 0.00 0.00 3.85
5416 6042 3.607370 GAGTGAACGGCCCAGGACC 62.607 68.421 0.00 0.00 0.00 4.46
5444 6070 3.624300 CGCATCGCTCCGCTTGAG 61.624 66.667 0.00 0.00 44.47 3.02
5445 6071 3.267860 GCATCGCTCCGCTTGAGG 61.268 66.667 2.76 0.00 41.73 3.86
5446 6072 3.267860 CATCGCTCCGCTTGAGGC 61.268 66.667 2.76 0.00 41.73 4.70
5464 6090 3.437795 GACTCGGGAGGCGACGAA 61.438 66.667 0.00 0.00 38.79 3.85
5465 6091 2.986306 GACTCGGGAGGCGACGAAA 61.986 63.158 0.00 0.00 38.79 3.46
5466 6092 2.506438 CTCGGGAGGCGACGAAAC 60.506 66.667 0.00 0.00 38.79 2.78
5467 6093 3.984200 CTCGGGAGGCGACGAAACC 62.984 68.421 0.00 0.00 38.79 3.27
5469 6095 3.703127 GGGAGGCGACGAAACCCT 61.703 66.667 13.69 4.28 37.75 4.34
5470 6096 2.353610 GGGAGGCGACGAAACCCTA 61.354 63.158 13.69 0.00 37.75 3.53
5471 6097 1.141234 GGAGGCGACGAAACCCTAG 59.859 63.158 0.00 0.00 0.00 3.02
5472 6098 1.518792 GAGGCGACGAAACCCTAGC 60.519 63.158 0.00 0.00 0.00 3.42
5473 6099 2.510918 GGCGACGAAACCCTAGCC 60.511 66.667 0.00 0.00 37.61 3.93
5474 6100 2.263540 GCGACGAAACCCTAGCCA 59.736 61.111 0.00 0.00 0.00 4.75
5475 6101 2.098831 GCGACGAAACCCTAGCCAC 61.099 63.158 0.00 0.00 0.00 5.01
5476 6102 1.447314 CGACGAAACCCTAGCCACC 60.447 63.158 0.00 0.00 0.00 4.61
5477 6103 1.675219 GACGAAACCCTAGCCACCA 59.325 57.895 0.00 0.00 0.00 4.17
5478 6104 0.391263 GACGAAACCCTAGCCACCAG 60.391 60.000 0.00 0.00 0.00 4.00
5479 6105 1.125711 ACGAAACCCTAGCCACCAGT 61.126 55.000 0.00 0.00 0.00 4.00
5480 6106 0.391263 CGAAACCCTAGCCACCAGTC 60.391 60.000 0.00 0.00 0.00 3.51
5481 6107 0.035343 GAAACCCTAGCCACCAGTCC 60.035 60.000 0.00 0.00 0.00 3.85
5482 6108 0.475828 AAACCCTAGCCACCAGTCCT 60.476 55.000 0.00 0.00 0.00 3.85
5483 6109 0.910088 AACCCTAGCCACCAGTCCTC 60.910 60.000 0.00 0.00 0.00 3.71
5484 6110 2.066999 CCCTAGCCACCAGTCCTCC 61.067 68.421 0.00 0.00 0.00 4.30
5485 6111 2.066999 CCTAGCCACCAGTCCTCCC 61.067 68.421 0.00 0.00 0.00 4.30
5486 6112 1.306141 CTAGCCACCAGTCCTCCCA 60.306 63.158 0.00 0.00 0.00 4.37
5487 6113 1.612442 TAGCCACCAGTCCTCCCAC 60.612 63.158 0.00 0.00 0.00 4.61
5488 6114 4.035102 GCCACCAGTCCTCCCACC 62.035 72.222 0.00 0.00 0.00 4.61
5489 6115 3.330720 CCACCAGTCCTCCCACCC 61.331 72.222 0.00 0.00 0.00 4.61
5490 6116 3.330720 CACCAGTCCTCCCACCCC 61.331 72.222 0.00 0.00 0.00 4.95
5491 6117 3.542602 ACCAGTCCTCCCACCCCT 61.543 66.667 0.00 0.00 0.00 4.79
5492 6118 2.689034 CCAGTCCTCCCACCCCTC 60.689 72.222 0.00 0.00 0.00 4.30
5493 6119 2.689034 CAGTCCTCCCACCCCTCC 60.689 72.222 0.00 0.00 0.00 4.30
5494 6120 2.876858 AGTCCTCCCACCCCTCCT 60.877 66.667 0.00 0.00 0.00 3.69
5495 6121 2.365768 GTCCTCCCACCCCTCCTC 60.366 72.222 0.00 0.00 0.00 3.71
5496 6122 3.695825 TCCTCCCACCCCTCCTCC 61.696 72.222 0.00 0.00 0.00 4.30
5497 6123 3.700350 CCTCCCACCCCTCCTCCT 61.700 72.222 0.00 0.00 0.00 3.69
5498 6124 2.456840 CTCCCACCCCTCCTCCTT 59.543 66.667 0.00 0.00 0.00 3.36
5499 6125 1.690985 CTCCCACCCCTCCTCCTTC 60.691 68.421 0.00 0.00 0.00 3.46
5500 6126 2.692741 CCCACCCCTCCTCCTTCC 60.693 72.222 0.00 0.00 0.00 3.46
5501 6127 2.692741 CCACCCCTCCTCCTTCCC 60.693 72.222 0.00 0.00 0.00 3.97
5502 6128 2.692741 CACCCCTCCTCCTTCCCC 60.693 72.222 0.00 0.00 0.00 4.81
5503 6129 4.040198 ACCCCTCCTCCTTCCCCC 62.040 72.222 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 56 3.203487 AGAGGGTAACGGAGAGAGAATCT 59.797 47.826 0.00 0.00 46.15 2.40
52 57 3.558033 AGAGGGTAACGGAGAGAGAATC 58.442 50.000 0.00 0.00 37.60 2.52
53 58 3.673543 AGAGGGTAACGGAGAGAGAAT 57.326 47.619 0.00 0.00 37.60 2.40
54 59 3.090037 CAAGAGGGTAACGGAGAGAGAA 58.910 50.000 0.00 0.00 37.60 2.87
118 126 3.084039 CAAGCCCATGTTCTTCTTGCTA 58.916 45.455 0.00 0.00 0.00 3.49
164 172 1.145119 ACCCACCAAAGGAAGGAAGAC 59.855 52.381 0.00 0.00 0.00 3.01
213 221 8.801715 TTGAAAGAAACAGAGCATTTGAATAC 57.198 30.769 0.00 0.00 0.00 1.89
286 294 2.904866 GAAACTGGGCACGCACCA 60.905 61.111 0.00 0.00 36.38 4.17
287 295 1.805428 AATGAAACTGGGCACGCACC 61.805 55.000 0.00 0.00 0.00 5.01
324 581 2.350772 CGTGTTTTTGGATCTGGACTGC 60.351 50.000 0.00 0.00 0.00 4.40
346 604 7.285340 AGGTCAAAAGGAATAATAAGACCCT 57.715 36.000 0.00 0.00 44.00 4.34
347 605 6.546403 GGAGGTCAAAAGGAATAATAAGACCC 59.454 42.308 0.00 0.00 44.00 4.46
352 610 8.167392 TCAACTGGAGGTCAAAAGGAATAATAA 58.833 33.333 0.00 0.00 0.00 1.40
353 611 7.695055 TCAACTGGAGGTCAAAAGGAATAATA 58.305 34.615 0.00 0.00 0.00 0.98
354 612 6.552008 TCAACTGGAGGTCAAAAGGAATAAT 58.448 36.000 0.00 0.00 0.00 1.28
416 691 7.936847 AGATCACTAGTACTAGACAAGATCCTG 59.063 40.741 31.93 17.81 36.97 3.86
417 692 8.041143 AGATCACTAGTACTAGACAAGATCCT 57.959 38.462 31.93 20.94 36.97 3.24
418 693 9.781633 TTAGATCACTAGTACTAGACAAGATCC 57.218 37.037 31.93 19.69 36.97 3.36
421 696 9.096160 CGTTTAGATCACTAGTACTAGACAAGA 57.904 37.037 31.93 22.57 36.97 3.02
422 697 7.851963 GCGTTTAGATCACTAGTACTAGACAAG 59.148 40.741 31.93 18.99 36.97 3.16
423 698 7.551974 AGCGTTTAGATCACTAGTACTAGACAA 59.448 37.037 31.93 18.09 36.97 3.18
424 699 7.046652 AGCGTTTAGATCACTAGTACTAGACA 58.953 38.462 31.93 19.15 36.97 3.41
425 700 7.439056 AGAGCGTTTAGATCACTAGTACTAGAC 59.561 40.741 31.93 17.42 37.82 2.59
426 701 7.499292 AGAGCGTTTAGATCACTAGTACTAGA 58.501 38.462 31.93 14.58 37.82 2.43
427 702 7.718272 AGAGCGTTTAGATCACTAGTACTAG 57.282 40.000 25.30 25.30 37.82 2.57
428 703 9.039870 GTAAGAGCGTTTAGATCACTAGTACTA 57.960 37.037 1.89 1.89 37.82 1.82
429 704 7.551974 TGTAAGAGCGTTTAGATCACTAGTACT 59.448 37.037 0.00 0.00 37.82 2.73
430 705 7.692088 TGTAAGAGCGTTTAGATCACTAGTAC 58.308 38.462 0.00 0.00 37.82 2.73
431 706 7.854557 TGTAAGAGCGTTTAGATCACTAGTA 57.145 36.000 0.00 0.00 37.82 1.82
432 707 6.754702 TGTAAGAGCGTTTAGATCACTAGT 57.245 37.500 0.00 0.00 37.82 2.57
433 708 8.535592 CAAATGTAAGAGCGTTTAGATCACTAG 58.464 37.037 0.00 0.00 37.82 2.57
434 709 8.033038 ACAAATGTAAGAGCGTTTAGATCACTA 58.967 33.333 0.00 0.00 37.82 2.74
435 710 6.874134 ACAAATGTAAGAGCGTTTAGATCACT 59.126 34.615 0.00 0.00 37.82 3.41
436 711 7.061752 ACAAATGTAAGAGCGTTTAGATCAC 57.938 36.000 0.00 0.00 37.82 3.06
437 712 7.667043 AACAAATGTAAGAGCGTTTAGATCA 57.333 32.000 0.00 0.00 37.82 2.92
443 718 8.665685 CCTCTATAAACAAATGTAAGAGCGTTT 58.334 33.333 0.00 0.00 0.00 3.60
444 719 8.038944 TCCTCTATAAACAAATGTAAGAGCGTT 58.961 33.333 8.49 0.00 0.00 4.84
445 720 7.553334 TCCTCTATAAACAAATGTAAGAGCGT 58.447 34.615 8.49 0.00 0.00 5.07
446 721 8.420374 TTCCTCTATAAACAAATGTAAGAGCG 57.580 34.615 8.49 0.00 0.00 5.03
447 722 9.384764 ACTTCCTCTATAAACAAATGTAAGAGC 57.615 33.333 8.49 0.00 0.00 4.09
461 736 9.537852 TGGAGTTGTTTAGTACTTCCTCTATAA 57.462 33.333 0.00 0.00 0.00 0.98
462 737 8.964772 GTGGAGTTGTTTAGTACTTCCTCTATA 58.035 37.037 0.00 0.00 0.00 1.31
463 738 7.674772 AGTGGAGTTGTTTAGTACTTCCTCTAT 59.325 37.037 0.00 0.00 31.18 1.98
464 739 7.008941 AGTGGAGTTGTTTAGTACTTCCTCTA 58.991 38.462 0.00 0.00 31.18 2.43
465 740 5.839606 AGTGGAGTTGTTTAGTACTTCCTCT 59.160 40.000 0.00 3.51 0.00 3.69
466 741 6.099159 AGTGGAGTTGTTTAGTACTTCCTC 57.901 41.667 0.00 1.01 0.00 3.71
467 742 6.781507 AGTAGTGGAGTTGTTTAGTACTTCCT 59.218 38.462 0.00 0.00 0.00 3.36
468 743 6.990798 AGTAGTGGAGTTGTTTAGTACTTCC 58.009 40.000 0.00 0.00 0.00 3.46
469 744 7.884257 AGAGTAGTGGAGTTGTTTAGTACTTC 58.116 38.462 0.00 0.00 31.38 3.01
470 745 7.836479 AGAGTAGTGGAGTTGTTTAGTACTT 57.164 36.000 0.00 0.00 31.38 2.24
471 746 8.162746 AGTAGAGTAGTGGAGTTGTTTAGTACT 58.837 37.037 0.00 0.00 33.30 2.73
472 747 8.334263 AGTAGAGTAGTGGAGTTGTTTAGTAC 57.666 38.462 0.00 0.00 0.00 2.73
491 766 6.364706 GTGTCAACAAGTCAATCAGAGTAGAG 59.635 42.308 0.00 0.00 0.00 2.43
493 768 5.985530 TGTGTCAACAAGTCAATCAGAGTAG 59.014 40.000 0.00 0.00 31.82 2.57
498 773 5.936686 AGATGTGTCAACAAGTCAATCAG 57.063 39.130 0.00 0.00 40.46 2.90
499 774 7.984422 ATAAGATGTGTCAACAAGTCAATCA 57.016 32.000 0.00 0.00 40.46 2.57
500 775 9.683069 AAAATAAGATGTGTCAACAAGTCAATC 57.317 29.630 0.00 0.00 40.46 2.67
502 777 9.299963 CAAAAATAAGATGTGTCAACAAGTCAA 57.700 29.630 0.00 0.00 40.46 3.18
503 778 7.920151 CCAAAAATAAGATGTGTCAACAAGTCA 59.080 33.333 0.00 0.00 40.46 3.41
504 779 7.382218 CCCAAAAATAAGATGTGTCAACAAGTC 59.618 37.037 0.00 0.00 40.46 3.01
505 780 7.147742 ACCCAAAAATAAGATGTGTCAACAAGT 60.148 33.333 0.00 0.00 40.46 3.16
506 781 7.209475 ACCCAAAAATAAGATGTGTCAACAAG 58.791 34.615 0.00 0.00 40.46 3.16
507 782 7.118496 ACCCAAAAATAAGATGTGTCAACAA 57.882 32.000 0.00 0.00 40.46 2.83
509 784 7.206687 TGAACCCAAAAATAAGATGTGTCAAC 58.793 34.615 0.00 0.00 0.00 3.18
512 787 6.981722 ACTGAACCCAAAAATAAGATGTGTC 58.018 36.000 0.00 0.00 0.00 3.67
518 793 5.538433 CCCTGAACTGAACCCAAAAATAAGA 59.462 40.000 0.00 0.00 0.00 2.10
526 801 1.702957 CTACCCCTGAACTGAACCCAA 59.297 52.381 0.00 0.00 0.00 4.12
573 892 4.004982 CGGGGTATCTCCTTTTCGAAAAA 58.995 43.478 22.67 9.71 36.25 1.94
574 893 3.602483 CGGGGTATCTCCTTTTCGAAAA 58.398 45.455 21.35 21.35 36.25 2.29
575 894 2.093341 CCGGGGTATCTCCTTTTCGAAA 60.093 50.000 6.47 6.47 36.25 3.46
576 895 1.483415 CCGGGGTATCTCCTTTTCGAA 59.517 52.381 0.00 0.00 36.25 3.71
577 896 1.117150 CCGGGGTATCTCCTTTTCGA 58.883 55.000 0.00 0.00 36.25 3.71
578 897 0.532196 GCCGGGGTATCTCCTTTTCG 60.532 60.000 2.18 0.00 36.25 3.46
579 898 0.179026 GGCCGGGGTATCTCCTTTTC 60.179 60.000 2.18 0.00 36.25 2.29
580 899 0.623617 AGGCCGGGGTATCTCCTTTT 60.624 55.000 2.18 0.00 36.25 2.27
581 900 1.004361 AGGCCGGGGTATCTCCTTT 59.996 57.895 2.18 0.00 36.25 3.11
582 901 1.459730 GAGGCCGGGGTATCTCCTT 60.460 63.158 2.18 0.00 36.25 3.36
583 902 2.201771 GAGGCCGGGGTATCTCCT 59.798 66.667 2.18 0.00 36.25 3.69
584 903 2.201771 AGAGGCCGGGGTATCTCC 59.798 66.667 2.18 0.00 0.00 3.71
585 904 2.873525 GCAGAGGCCGGGGTATCTC 61.874 68.421 2.18 0.00 0.00 2.75
586 905 2.844839 GCAGAGGCCGGGGTATCT 60.845 66.667 2.18 0.00 0.00 1.98
587 906 3.161450 TGCAGAGGCCGGGGTATC 61.161 66.667 2.18 0.00 40.13 2.24
588 907 3.480133 GTGCAGAGGCCGGGGTAT 61.480 66.667 2.18 0.00 40.13 2.73
591 910 4.864334 GATGTGCAGAGGCCGGGG 62.864 72.222 2.18 0.00 40.13 5.73
592 911 4.100084 TGATGTGCAGAGGCCGGG 62.100 66.667 2.18 0.00 40.13 5.73
606 925 1.502231 GCCGTATGCATCGTTCTGAT 58.498 50.000 0.19 0.00 40.77 2.90
607 926 0.529773 GGCCGTATGCATCGTTCTGA 60.530 55.000 0.19 0.00 43.89 3.27
608 927 0.530650 AGGCCGTATGCATCGTTCTG 60.531 55.000 0.19 0.00 43.89 3.02
609 928 0.249489 GAGGCCGTATGCATCGTTCT 60.249 55.000 0.19 6.54 41.45 3.01
610 929 2.226269 GAGGCCGTATGCATCGTTC 58.774 57.895 0.19 1.91 41.45 3.95
611 930 4.438346 GAGGCCGTATGCATCGTT 57.562 55.556 0.19 0.00 41.45 3.85
615 934 2.565841 GAAAGAAGAGGCCGTATGCAT 58.434 47.619 3.79 3.79 43.89 3.96
616 935 1.739035 CGAAAGAAGAGGCCGTATGCA 60.739 52.381 0.00 0.00 43.89 3.96
617 936 0.931005 CGAAAGAAGAGGCCGTATGC 59.069 55.000 0.00 0.00 40.16 3.14
618 937 2.579207 TCGAAAGAAGAGGCCGTATG 57.421 50.000 0.00 0.00 37.03 2.39
630 949 4.068599 TGTTACATGCATGGTTCGAAAGA 58.931 39.130 29.41 9.98 39.20 2.52
631 950 4.418013 TGTTACATGCATGGTTCGAAAG 57.582 40.909 29.41 2.41 0.00 2.62
632 951 4.541779 GTTGTTACATGCATGGTTCGAAA 58.458 39.130 29.41 13.35 0.00 3.46
633 952 3.057876 GGTTGTTACATGCATGGTTCGAA 60.058 43.478 29.41 12.86 0.00 3.71
634 953 2.486203 GGTTGTTACATGCATGGTTCGA 59.514 45.455 29.41 15.40 0.00 3.71
635 954 2.487762 AGGTTGTTACATGCATGGTTCG 59.512 45.455 29.41 5.50 0.00 3.95
636 955 5.637006 TTAGGTTGTTACATGCATGGTTC 57.363 39.130 29.41 18.22 0.00 3.62
637 956 5.624281 GCATTAGGTTGTTACATGCATGGTT 60.624 40.000 29.41 13.04 40.06 3.67
638 957 4.142182 GCATTAGGTTGTTACATGCATGGT 60.142 41.667 29.41 17.33 40.06 3.55
639 958 4.142204 TGCATTAGGTTGTTACATGCATGG 60.142 41.667 29.41 12.50 44.07 3.66
640 959 4.996344 TGCATTAGGTTGTTACATGCATG 58.004 39.130 25.09 25.09 44.07 4.06
642 961 3.823304 TGTGCATTAGGTTGTTACATGCA 59.177 39.130 5.14 5.14 46.14 3.96
643 962 4.433186 TGTGCATTAGGTTGTTACATGC 57.567 40.909 0.00 0.06 40.61 4.06
644 963 5.858049 CACTTGTGCATTAGGTTGTTACATG 59.142 40.000 0.00 0.00 0.00 3.21
645 964 5.564651 GCACTTGTGCATTAGGTTGTTACAT 60.565 40.000 19.36 0.00 34.41 2.29
646 965 4.261405 GCACTTGTGCATTAGGTTGTTACA 60.261 41.667 19.36 0.00 34.41 2.41
647 966 4.226761 GCACTTGTGCATTAGGTTGTTAC 58.773 43.478 19.36 0.00 34.41 2.50
648 967 3.058570 CGCACTTGTGCATTAGGTTGTTA 60.059 43.478 22.97 0.00 34.41 2.41
653 972 1.806542 CTTCGCACTTGTGCATTAGGT 59.193 47.619 22.97 0.00 34.41 3.08
654 973 1.806542 ACTTCGCACTTGTGCATTAGG 59.193 47.619 22.97 11.79 34.41 2.69
655 974 2.843077 CACTTCGCACTTGTGCATTAG 58.157 47.619 22.97 17.62 34.41 1.73
670 989 2.223157 TGCGTACACAAAACTGCACTTC 60.223 45.455 0.00 0.00 0.00 3.01
673 992 1.843753 GTTGCGTACACAAAACTGCAC 59.156 47.619 0.00 0.00 31.16 4.57
684 1003 3.078097 ACCATGCATTAAGTTGCGTACA 58.922 40.909 0.00 0.00 45.77 2.90
711 1030 1.212195 GTTATGGGGGAGTGAGGAACC 59.788 57.143 0.00 0.00 0.00 3.62
719 1038 0.912486 GCAGTCAGTTATGGGGGAGT 59.088 55.000 0.00 0.00 0.00 3.85
724 1043 3.005554 CTGTTGAGCAGTCAGTTATGGG 58.994 50.000 0.00 0.00 40.27 4.00
775 1095 0.040958 CTCGTGGCACTGCAGAAAAC 60.041 55.000 23.35 11.66 0.00 2.43
778 1098 0.671472 CATCTCGTGGCACTGCAGAA 60.671 55.000 23.35 0.00 0.00 3.02
783 1103 3.119291 GAGTTATCATCTCGTGGCACTG 58.881 50.000 16.72 7.17 0.00 3.66
817 1137 9.607988 ACACGTTAATGAACAGATATATCCAAA 57.392 29.630 9.18 0.00 35.06 3.28
819 1139 9.908152 CTACACGTTAATGAACAGATATATCCA 57.092 33.333 9.18 0.76 35.06 3.41
820 1140 9.909644 ACTACACGTTAATGAACAGATATATCC 57.090 33.333 9.18 0.00 35.06 2.59
825 1145 9.345517 GTTGTACTACACGTTAATGAACAGATA 57.654 33.333 0.58 0.00 35.06 1.98
826 1146 7.330208 GGTTGTACTACACGTTAATGAACAGAT 59.670 37.037 9.65 0.00 35.06 2.90
827 1147 6.642131 GGTTGTACTACACGTTAATGAACAGA 59.358 38.462 9.65 0.00 35.06 3.41
828 1148 6.421501 TGGTTGTACTACACGTTAATGAACAG 59.578 38.462 9.65 0.00 35.06 3.16
829 1149 6.279123 TGGTTGTACTACACGTTAATGAACA 58.721 36.000 9.65 0.00 35.06 3.18
830 1150 6.768029 TGGTTGTACTACACGTTAATGAAC 57.232 37.500 9.65 0.00 0.00 3.18
831 1151 6.424509 CCTTGGTTGTACTACACGTTAATGAA 59.575 38.462 9.65 0.00 0.00 2.57
832 1152 5.927689 CCTTGGTTGTACTACACGTTAATGA 59.072 40.000 9.65 0.00 0.00 2.57
833 1153 5.697633 ACCTTGGTTGTACTACACGTTAATG 59.302 40.000 9.65 0.00 0.00 1.90
834 1154 5.697633 CACCTTGGTTGTACTACACGTTAAT 59.302 40.000 9.65 0.00 0.00 1.40
835 1155 5.049167 CACCTTGGTTGTACTACACGTTAA 58.951 41.667 9.65 0.00 0.00 2.01
836 1156 4.340666 TCACCTTGGTTGTACTACACGTTA 59.659 41.667 9.65 0.00 0.00 3.18
837 1157 3.132646 TCACCTTGGTTGTACTACACGTT 59.867 43.478 9.65 0.00 0.00 3.99
838 1158 2.694628 TCACCTTGGTTGTACTACACGT 59.305 45.455 9.65 0.00 0.00 4.49
839 1159 3.005050 TCTCACCTTGGTTGTACTACACG 59.995 47.826 9.65 0.00 0.00 4.49
840 1160 4.595762 TCTCACCTTGGTTGTACTACAC 57.404 45.455 9.65 0.21 0.00 2.90
841 1161 5.617528 TTTCTCACCTTGGTTGTACTACA 57.382 39.130 9.65 0.00 0.00 2.74
842 1162 6.930667 TTTTTCTCACCTTGGTTGTACTAC 57.069 37.500 0.00 0.00 0.00 2.73
869 1189 0.108138 AAAAGATGAGGACGGGCTCG 60.108 55.000 3.27 3.27 43.02 5.03
870 1190 1.657822 GAAAAGATGAGGACGGGCTC 58.342 55.000 0.00 0.00 0.00 4.70
871 1191 0.253327 GGAAAAGATGAGGACGGGCT 59.747 55.000 0.00 0.00 0.00 5.19
872 1192 1.090052 CGGAAAAGATGAGGACGGGC 61.090 60.000 0.00 0.00 0.00 6.13
873 1193 0.249398 ACGGAAAAGATGAGGACGGG 59.751 55.000 0.00 0.00 0.00 5.28
891 1211 4.272748 GTGGAAAACCTACAGTTGAGACAC 59.727 45.833 0.00 0.00 39.19 3.67
915 1235 3.181476 GCCAATTTGTTTCACTGTCCTGT 60.181 43.478 0.00 0.00 0.00 4.00
917 1237 2.034558 CGCCAATTTGTTTCACTGTCCT 59.965 45.455 0.00 0.00 0.00 3.85
944 1264 2.280524 CGTGTGGCTCCGTTTCCA 60.281 61.111 0.00 0.00 0.00 3.53
954 1274 4.314440 TCTGGTCAGGCGTGTGGC 62.314 66.667 6.26 0.00 42.51 5.01
956 1276 2.047844 CCTCTGGTCAGGCGTGTG 60.048 66.667 6.26 0.00 0.00 3.82
957 1277 1.696097 AAACCTCTGGTCAGGCGTGT 61.696 55.000 6.26 0.00 36.98 4.49
958 1278 1.071471 AAACCTCTGGTCAGGCGTG 59.929 57.895 0.00 0.00 36.98 5.34
1182 1542 0.170339 GTTAAATGTGAGGTGGGCGC 59.830 55.000 0.00 0.00 0.00 6.53
1199 1559 1.421268 TGAGGAGCATGACACAAGGTT 59.579 47.619 0.00 0.00 0.00 3.50
1201 1561 2.189594 TTGAGGAGCATGACACAAGG 57.810 50.000 0.00 0.00 0.00 3.61
1203 1563 3.421919 TGATTGAGGAGCATGACACAA 57.578 42.857 0.00 0.00 0.00 3.33
1205 1565 3.311871 GTGATGATTGAGGAGCATGACAC 59.688 47.826 0.00 0.00 38.04 3.67
1227 1587 6.985188 TGAAATATGACCGGAAAGAAGAAG 57.015 37.500 9.46 0.00 0.00 2.85
1238 1598 5.709966 TCGACTGGATATGAAATATGACCG 58.290 41.667 0.00 0.00 40.26 4.79
1257 1617 3.335327 AGGAGGACCCATCGTAATCGAC 61.335 54.545 0.00 0.00 42.18 4.20
1259 1619 1.000163 CAGGAGGACCCATCGTAATCG 60.000 57.143 0.00 0.00 37.41 3.34
1299 1659 0.676466 TGGCAGCCTGATTTGTACCG 60.676 55.000 14.15 0.00 0.00 4.02
1333 1693 3.446442 AAGTGAACGGAGGGAGTACTA 57.554 47.619 0.00 0.00 0.00 1.82
1345 1705 5.622770 ACAAGGCCTTATAAAAGTGAACG 57.377 39.130 20.00 3.16 0.00 3.95
1346 1706 7.389607 TGTCTACAAGGCCTTATAAAAGTGAAC 59.610 37.037 20.00 12.89 0.00 3.18
1363 1723 3.990469 ACGCTGTCTGAAATGTCTACAAG 59.010 43.478 0.00 0.00 0.00 3.16
1364 1724 3.740832 CACGCTGTCTGAAATGTCTACAA 59.259 43.478 0.00 0.00 0.00 2.41
1383 1743 3.114809 TGAAATTGAGCTGTTTTGCACG 58.885 40.909 0.00 0.00 34.99 5.34
1393 1753 4.154918 GTCTCGGACAATTGAAATTGAGCT 59.845 41.667 19.85 0.00 46.72 4.09
1398 1758 4.315803 AGTCGTCTCGGACAATTGAAATT 58.684 39.130 13.59 0.00 39.42 1.82
1405 1765 6.530534 CACTTTTATAAGTCGTCTCGGACAAT 59.469 38.462 0.00 0.00 42.67 2.71
1411 1771 5.003214 CCGTTCACTTTTATAAGTCGTCTCG 59.997 44.000 0.00 0.00 42.67 4.04
1414 1774 5.287992 CCTCCGTTCACTTTTATAAGTCGTC 59.712 44.000 0.00 0.00 42.67 4.20
1433 1793 2.676342 CCGTCAAAAGTTATTCCCTCCG 59.324 50.000 0.00 0.00 0.00 4.63
1461 1821 6.571605 TCATCATCAGCAAAAGACAAACAAA 58.428 32.000 0.00 0.00 0.00 2.83
1464 1824 5.766222 ACTCATCATCAGCAAAAGACAAAC 58.234 37.500 0.00 0.00 0.00 2.93
1468 1828 6.734104 AGTTACTCATCATCAGCAAAAGAC 57.266 37.500 0.00 0.00 0.00 3.01
1470 1830 8.261492 AGTTAGTTACTCATCATCAGCAAAAG 57.739 34.615 0.00 0.00 28.23 2.27
1490 1850 3.792401 TGCGATTCCACCACATAGTTAG 58.208 45.455 0.00 0.00 0.00 2.34
1491 1851 3.449377 TCTGCGATTCCACCACATAGTTA 59.551 43.478 0.00 0.00 0.00 2.24
1492 1852 2.236146 TCTGCGATTCCACCACATAGTT 59.764 45.455 0.00 0.00 0.00 2.24
1493 1853 1.831106 TCTGCGATTCCACCACATAGT 59.169 47.619 0.00 0.00 0.00 2.12
1495 1855 2.433970 TGATCTGCGATTCCACCACATA 59.566 45.455 0.00 0.00 0.00 2.29
1496 1856 1.210234 TGATCTGCGATTCCACCACAT 59.790 47.619 0.00 0.00 0.00 3.21
1675 2038 6.697892 GCTGCCTTTGAGTAGTATTGTACTAG 59.302 42.308 0.00 0.00 41.59 2.57
1676 2039 6.380274 AGCTGCCTTTGAGTAGTATTGTACTA 59.620 38.462 0.00 0.00 40.14 1.82
1677 2040 5.187967 AGCTGCCTTTGAGTAGTATTGTACT 59.812 40.000 0.00 0.00 42.68 2.73
1678 2041 5.420409 AGCTGCCTTTGAGTAGTATTGTAC 58.580 41.667 0.00 0.00 0.00 2.90
1679 2042 5.677319 AGCTGCCTTTGAGTAGTATTGTA 57.323 39.130 0.00 0.00 0.00 2.41
1696 2063 2.991250 TGATTGGAAAGAGGTAGCTGC 58.009 47.619 0.00 0.00 0.00 5.25
1735 2102 4.517075 TGCGTCCAATATTTCTGACAACAA 59.483 37.500 9.15 0.00 0.00 2.83
1935 2306 1.089920 CAGCGCATAAGCAGGAAACT 58.910 50.000 11.47 0.00 46.44 2.66
1995 2366 7.043258 CGTCAGCACATAATTAACAACGGTATA 60.043 37.037 0.00 0.00 0.00 1.47
2008 2379 3.002246 CGCAATAACCGTCAGCACATAAT 59.998 43.478 0.00 0.00 0.00 1.28
2027 2398 0.320073 CCTTTACGACAAGGGACGCA 60.320 55.000 8.92 0.00 39.95 5.24
2054 2425 1.139654 TCATCTTCCCTCATTCTGCCG 59.860 52.381 0.00 0.00 0.00 5.69
2097 2468 7.204604 TGGCAATAATCAACAGCATTAATCAG 58.795 34.615 0.00 0.00 0.00 2.90
2144 2515 5.415221 AGAGAGGAGCTCACTTTTAAATCG 58.585 41.667 17.19 0.00 46.45 3.34
2167 2538 1.340017 GGGAAACAGGCAGCACAGATA 60.340 52.381 0.00 0.00 0.00 1.98
2172 2543 1.518903 GACAGGGAAACAGGCAGCAC 61.519 60.000 0.00 0.00 0.00 4.40
2185 2556 4.142687 GGTTCACATTTCATAACGACAGGG 60.143 45.833 0.00 0.00 0.00 4.45
2186 2557 4.695455 AGGTTCACATTTCATAACGACAGG 59.305 41.667 0.00 0.00 0.00 4.00
2188 2559 7.308109 GGTTTAGGTTCACATTTCATAACGACA 60.308 37.037 0.00 0.00 0.00 4.35
2189 2560 7.019418 GGTTTAGGTTCACATTTCATAACGAC 58.981 38.462 0.00 0.00 0.00 4.34
2190 2561 6.128499 CGGTTTAGGTTCACATTTCATAACGA 60.128 38.462 0.00 0.00 0.00 3.85
2191 2562 6.019152 CGGTTTAGGTTCACATTTCATAACG 58.981 40.000 0.00 0.00 0.00 3.18
2192 2563 7.136289 TCGGTTTAGGTTCACATTTCATAAC 57.864 36.000 0.00 0.00 0.00 1.89
2193 2564 7.747155 TTCGGTTTAGGTTCACATTTCATAA 57.253 32.000 0.00 0.00 0.00 1.90
2194 2565 7.747155 TTTCGGTTTAGGTTCACATTTCATA 57.253 32.000 0.00 0.00 0.00 2.15
2195 2566 6.642707 TTTCGGTTTAGGTTCACATTTCAT 57.357 33.333 0.00 0.00 0.00 2.57
2196 2567 6.642707 ATTTCGGTTTAGGTTCACATTTCA 57.357 33.333 0.00 0.00 0.00 2.69
2197 2568 7.813645 AGTATTTCGGTTTAGGTTCACATTTC 58.186 34.615 0.00 0.00 0.00 2.17
2198 2569 7.754851 AGTATTTCGGTTTAGGTTCACATTT 57.245 32.000 0.00 0.00 0.00 2.32
2201 2572 5.049267 GCAAGTATTTCGGTTTAGGTTCACA 60.049 40.000 0.00 0.00 0.00 3.58
2202 2573 5.049267 TGCAAGTATTTCGGTTTAGGTTCAC 60.049 40.000 0.00 0.00 0.00 3.18
2203 2574 5.064558 TGCAAGTATTTCGGTTTAGGTTCA 58.935 37.500 0.00 0.00 0.00 3.18
2204 2575 5.616488 TGCAAGTATTTCGGTTTAGGTTC 57.384 39.130 0.00 0.00 0.00 3.62
2206 2577 3.439129 GCTGCAAGTATTTCGGTTTAGGT 59.561 43.478 0.00 0.00 35.30 3.08
2207 2578 3.181500 GGCTGCAAGTATTTCGGTTTAGG 60.181 47.826 0.50 0.00 35.30 2.69
2215 2598 8.707938 ATAAATTTTCTGGCTGCAAGTATTTC 57.292 30.769 3.55 0.00 35.30 2.17
2218 2601 8.971073 AGTAATAAATTTTCTGGCTGCAAGTAT 58.029 29.630 3.55 0.00 35.30 2.12
2263 2646 2.629617 CAGCCCAAAATCAGACACCTTT 59.370 45.455 0.00 0.00 0.00 3.11
2932 3335 9.434275 TCCTATCTAAGTATTGGTTCAATGAGA 57.566 33.333 3.65 2.51 35.54 3.27
2992 3396 1.863454 GAACTGACGGCATGCTATCTG 59.137 52.381 18.92 19.31 0.00 2.90
2998 3402 0.099436 GAATGGAACTGACGGCATGC 59.901 55.000 9.90 9.90 0.00 4.06
3004 3408 1.667724 GGCTGATGAATGGAACTGACG 59.332 52.381 0.00 0.00 0.00 4.35
3129 3534 5.534207 TCTCTGCCACAATTTGTCAAAAT 57.466 34.783 1.31 0.00 37.61 1.82
3131 3536 4.998671 TTCTCTGCCACAATTTGTCAAA 57.001 36.364 0.00 0.00 0.00 2.69
3199 3604 1.075542 CATCAAACTCCGCACGCTTA 58.924 50.000 0.00 0.00 0.00 3.09
3551 3956 8.983702 ACTTTAAAACCATGGTGAGTTAAGTA 57.016 30.769 20.60 8.69 0.00 2.24
3581 3986 9.088987 TCACACATGATTAAGGCTATATCAGTA 57.911 33.333 14.37 0.00 32.32 2.74
3582 3987 7.966812 TCACACATGATTAAGGCTATATCAGT 58.033 34.615 14.37 10.56 32.32 3.41
3594 3999 8.738106 TCAAGTGCATATTTCACACATGATTAA 58.262 29.630 0.00 0.00 37.18 1.40
3595 4000 8.278729 TCAAGTGCATATTTCACACATGATTA 57.721 30.769 0.00 0.00 37.18 1.75
3630 4035 9.357161 ACTGAGATACCGAATTAGAGATACTTT 57.643 33.333 0.00 0.00 0.00 2.66
3631 4036 8.927675 ACTGAGATACCGAATTAGAGATACTT 57.072 34.615 0.00 0.00 0.00 2.24
3632 4037 8.927675 AACTGAGATACCGAATTAGAGATACT 57.072 34.615 0.00 0.00 0.00 2.12
3635 4040 8.927675 ACTAACTGAGATACCGAATTAGAGAT 57.072 34.615 0.00 0.00 0.00 2.75
3636 4041 9.270640 GTACTAACTGAGATACCGAATTAGAGA 57.729 37.037 0.00 0.00 0.00 3.10
3637 4042 9.053840 TGTACTAACTGAGATACCGAATTAGAG 57.946 37.037 0.00 0.00 0.00 2.43
3638 4043 8.969260 TGTACTAACTGAGATACCGAATTAGA 57.031 34.615 0.00 0.00 0.00 2.10
3640 4045 9.961265 CAATGTACTAACTGAGATACCGAATTA 57.039 33.333 0.00 0.00 0.00 1.40
3641 4046 8.692710 TCAATGTACTAACTGAGATACCGAATT 58.307 33.333 0.00 0.00 0.00 2.17
3642 4047 8.234136 TCAATGTACTAACTGAGATACCGAAT 57.766 34.615 0.00 0.00 0.00 3.34
3643 4048 7.634671 TCAATGTACTAACTGAGATACCGAA 57.365 36.000 0.00 0.00 0.00 4.30
3647 4052 9.469807 CCTGATTCAATGTACTAACTGAGATAC 57.530 37.037 0.00 0.00 0.00 2.24
3659 4064 6.767902 TGATAGCTTTCCCTGATTCAATGTAC 59.232 38.462 0.00 0.00 0.00 2.90
3660 4065 6.899089 TGATAGCTTTCCCTGATTCAATGTA 58.101 36.000 0.00 0.00 0.00 2.29
3661 4066 5.759059 TGATAGCTTTCCCTGATTCAATGT 58.241 37.500 0.00 0.00 0.00 2.71
3755 4165 6.043327 TCGAAATCATAAATGCGTAACAGG 57.957 37.500 0.00 0.00 0.00 4.00
3817 4227 7.562454 TGTTTCTCTTTTAAATTCCTGTCGT 57.438 32.000 0.00 0.00 0.00 4.34
4133 4543 6.054295 GTGGATTCAGTTCAGCATATTCTCT 58.946 40.000 0.00 0.00 0.00 3.10
4303 4715 4.394300 CAGTTGACAGGCTCTAATTCCAAG 59.606 45.833 0.00 0.00 0.00 3.61
4310 4722 2.828520 CCTCTCAGTTGACAGGCTCTAA 59.171 50.000 0.00 0.00 0.00 2.10
4316 4728 0.394192 TGCACCTCTCAGTTGACAGG 59.606 55.000 2.33 2.33 36.45 4.00
4351 4763 3.065510 CGAGTCCAGATTACTGATGTCGT 59.934 47.826 0.00 0.00 46.03 4.34
4356 4768 5.136828 ACTCATCGAGTCCAGATTACTGAT 58.863 41.667 0.00 0.00 41.54 2.90
4375 4787 7.001674 ACACAATTTACAATCCTGGTAACTCA 58.998 34.615 0.00 0.00 30.91 3.41
4384 4796 7.287696 AGAGGTCAAAACACAATTTACAATCCT 59.712 33.333 0.00 0.00 0.00 3.24
4400 4812 3.067601 GGAAAGGCGAAAAGAGGTCAAAA 59.932 43.478 0.00 0.00 0.00 2.44
4403 4815 1.544759 GGGAAAGGCGAAAAGAGGTCA 60.545 52.381 0.00 0.00 0.00 4.02
4404 4816 1.166129 GGGAAAGGCGAAAAGAGGTC 58.834 55.000 0.00 0.00 0.00 3.85
4405 4817 0.771755 AGGGAAAGGCGAAAAGAGGT 59.228 50.000 0.00 0.00 0.00 3.85
4409 4821 1.502190 GCGAGGGAAAGGCGAAAAG 59.498 57.895 0.00 0.00 0.00 2.27
4441 4853 8.298854 GCACCACAATATCAAGATTTATGCATA 58.701 33.333 1.16 1.16 0.00 3.14
4444 4856 6.506147 TGCACCACAATATCAAGATTTATGC 58.494 36.000 0.00 0.00 0.00 3.14
4643 5056 4.354893 TCCACCGGTACTTACAAAATGT 57.645 40.909 6.87 0.00 0.00 2.71
4667 5080 1.227943 GCACAGCTGACAACAGGGA 60.228 57.895 23.35 0.00 43.62 4.20
4735 5148 6.421801 ACTTGATTGTGCTTGACTTAAAATGC 59.578 34.615 0.00 0.00 0.00 3.56
4738 5151 7.284489 ACCTACTTGATTGTGCTTGACTTAAAA 59.716 33.333 0.00 0.00 0.00 1.52
4754 5167 9.847224 CCTAATATACACCAAAACCTACTTGAT 57.153 33.333 0.00 0.00 0.00 2.57
4769 5182 6.512741 CGAAAACCCACATGCCTAATATACAC 60.513 42.308 0.00 0.00 0.00 2.90
4874 5290 2.534019 CGAAATGATGACCGGCCGG 61.534 63.158 42.17 42.17 42.03 6.13
4921 5341 8.560355 AACAAGGCAAAAACAAGAAATTAACT 57.440 26.923 0.00 0.00 0.00 2.24
5084 5504 3.982372 GAAGACCGACGGCGATGCA 62.982 63.158 15.16 0.00 40.82 3.96
5094 5514 2.510382 AGATGGTAGGAGAGAAGACCGA 59.490 50.000 0.00 0.00 34.49 4.69
5177 5633 5.011090 TGCTATGTGTTCCTATCTCACAC 57.989 43.478 0.00 0.00 43.27 3.82
5241 5821 2.505866 GCAGCATCTTTAACCGAAACG 58.494 47.619 0.00 0.00 0.00 3.60
5319 5945 1.688197 CCCACCATGCAACTTGAGTTT 59.312 47.619 0.00 0.00 35.83 2.66
5323 5949 2.170166 GATTCCCACCATGCAACTTGA 58.830 47.619 0.00 0.00 0.00 3.02
5339 5965 2.037381 GGATCGGTTCCTACTGGGATTC 59.963 54.545 0.00 0.00 44.66 2.52
5340 5966 2.047830 GGATCGGTTCCTACTGGGATT 58.952 52.381 0.00 0.00 44.66 3.01
5341 5967 1.062428 TGGATCGGTTCCTACTGGGAT 60.062 52.381 6.66 0.00 45.68 3.85
5342 5968 0.337082 TGGATCGGTTCCTACTGGGA 59.663 55.000 6.66 0.00 45.68 4.37
5343 5969 1.200519 TTGGATCGGTTCCTACTGGG 58.799 55.000 6.66 0.00 45.68 4.45
5344 5970 2.500098 TCTTTGGATCGGTTCCTACTGG 59.500 50.000 6.66 0.00 45.68 4.00
5345 5971 3.430929 CCTCTTTGGATCGGTTCCTACTG 60.431 52.174 6.66 0.00 45.68 2.74
5346 5972 2.766828 CCTCTTTGGATCGGTTCCTACT 59.233 50.000 6.66 0.00 45.68 2.57
5347 5973 2.158943 CCCTCTTTGGATCGGTTCCTAC 60.159 54.545 6.66 0.00 45.68 3.18
5348 5974 2.116238 CCCTCTTTGGATCGGTTCCTA 58.884 52.381 6.66 0.00 45.68 2.94
5349 5975 0.912486 CCCTCTTTGGATCGGTTCCT 59.088 55.000 6.66 0.00 45.68 3.36
5350 5976 0.909623 TCCCTCTTTGGATCGGTTCC 59.090 55.000 0.00 0.00 45.69 3.62
5351 5977 2.781681 TTCCCTCTTTGGATCGGTTC 57.218 50.000 0.00 0.00 38.35 3.62
5352 5978 2.642807 TCTTTCCCTCTTTGGATCGGTT 59.357 45.455 0.00 0.00 38.35 4.44
5353 5979 2.237392 CTCTTTCCCTCTTTGGATCGGT 59.763 50.000 0.00 0.00 38.35 4.69
5354 5980 2.420687 CCTCTTTCCCTCTTTGGATCGG 60.421 54.545 0.00 0.00 38.35 4.18
5355 5981 2.420687 CCCTCTTTCCCTCTTTGGATCG 60.421 54.545 0.00 0.00 38.35 3.69
5356 5982 2.092158 CCCCTCTTTCCCTCTTTGGATC 60.092 54.545 0.00 0.00 38.35 3.36
5357 5983 1.925959 CCCCTCTTTCCCTCTTTGGAT 59.074 52.381 0.00 0.00 38.35 3.41
5358 5984 1.372501 CCCCTCTTTCCCTCTTTGGA 58.627 55.000 0.00 0.00 38.35 3.53
5359 5985 0.332972 CCCCCTCTTTCCCTCTTTGG 59.667 60.000 0.00 0.00 0.00 3.28
5360 5986 3.987594 CCCCCTCTTTCCCTCTTTG 57.012 57.895 0.00 0.00 0.00 2.77
5375 6001 1.003696 CTTTCAGTTCTCCACTCCCCC 59.996 57.143 0.00 0.00 30.92 5.40
5376 6002 1.700186 ACTTTCAGTTCTCCACTCCCC 59.300 52.381 0.00 0.00 30.92 4.81
5377 6003 2.551071 CCACTTTCAGTTCTCCACTCCC 60.551 54.545 0.00 0.00 30.92 4.30
5378 6004 2.368875 TCCACTTTCAGTTCTCCACTCC 59.631 50.000 0.00 0.00 30.92 3.85
5379 6005 3.070302 ACTCCACTTTCAGTTCTCCACTC 59.930 47.826 0.00 0.00 30.92 3.51
5380 6006 3.041946 ACTCCACTTTCAGTTCTCCACT 58.958 45.455 0.00 0.00 35.35 4.00
5381 6007 3.134458 CACTCCACTTTCAGTTCTCCAC 58.866 50.000 0.00 0.00 0.00 4.02
5382 6008 3.038280 TCACTCCACTTTCAGTTCTCCA 58.962 45.455 0.00 0.00 0.00 3.86
5383 6009 3.753294 TCACTCCACTTTCAGTTCTCC 57.247 47.619 0.00 0.00 0.00 3.71
5384 6010 3.491267 CGTTCACTCCACTTTCAGTTCTC 59.509 47.826 0.00 0.00 0.00 2.87
5385 6011 3.458189 CGTTCACTCCACTTTCAGTTCT 58.542 45.455 0.00 0.00 0.00 3.01
5386 6012 2.544267 CCGTTCACTCCACTTTCAGTTC 59.456 50.000 0.00 0.00 0.00 3.01
5387 6013 2.561569 CCGTTCACTCCACTTTCAGTT 58.438 47.619 0.00 0.00 0.00 3.16
5388 6014 1.810412 GCCGTTCACTCCACTTTCAGT 60.810 52.381 0.00 0.00 0.00 3.41
5389 6015 0.868406 GCCGTTCACTCCACTTTCAG 59.132 55.000 0.00 0.00 0.00 3.02
5390 6016 0.534203 GGCCGTTCACTCCACTTTCA 60.534 55.000 0.00 0.00 0.00 2.69
5391 6017 1.235281 GGGCCGTTCACTCCACTTTC 61.235 60.000 0.00 0.00 0.00 2.62
5392 6018 1.228154 GGGCCGTTCACTCCACTTT 60.228 57.895 0.00 0.00 0.00 2.66
5393 6019 2.397413 CTGGGCCGTTCACTCCACTT 62.397 60.000 0.00 0.00 0.00 3.16
5394 6020 2.847234 TGGGCCGTTCACTCCACT 60.847 61.111 0.00 0.00 0.00 4.00
5395 6021 2.358737 CTGGGCCGTTCACTCCAC 60.359 66.667 0.00 0.00 0.00 4.02
5396 6022 3.636231 CCTGGGCCGTTCACTCCA 61.636 66.667 0.00 0.00 0.00 3.86
5397 6023 3.319198 TCCTGGGCCGTTCACTCC 61.319 66.667 0.00 0.00 0.00 3.85
5398 6024 2.047179 GTCCTGGGCCGTTCACTC 60.047 66.667 0.00 0.00 0.00 3.51
5399 6025 3.637273 GGTCCTGGGCCGTTCACT 61.637 66.667 0.00 0.00 0.00 3.41
5438 6064 3.708220 CTCCCGAGTCGCCTCAAGC 62.708 68.421 7.12 0.00 37.59 4.01
5439 6065 2.492090 CTCCCGAGTCGCCTCAAG 59.508 66.667 7.12 0.00 37.59 3.02
5440 6066 3.068691 CCTCCCGAGTCGCCTCAA 61.069 66.667 7.12 0.00 37.59 3.02
5450 6076 4.060038 GGTTTCGTCGCCTCCCGA 62.060 66.667 0.00 0.00 45.15 5.14
5452 6078 2.294132 CTAGGGTTTCGTCGCCTCCC 62.294 65.000 9.39 9.39 38.50 4.30
5453 6079 1.141234 CTAGGGTTTCGTCGCCTCC 59.859 63.158 0.00 0.00 0.00 4.30
5454 6080 1.518792 GCTAGGGTTTCGTCGCCTC 60.519 63.158 0.00 0.00 0.00 4.70
5455 6081 2.577593 GCTAGGGTTTCGTCGCCT 59.422 61.111 0.00 0.00 0.00 5.52
5456 6082 2.510918 GGCTAGGGTTTCGTCGCC 60.511 66.667 0.00 0.00 33.57 5.54
5457 6083 2.098831 GTGGCTAGGGTTTCGTCGC 61.099 63.158 0.00 0.00 0.00 5.19
5458 6084 1.447314 GGTGGCTAGGGTTTCGTCG 60.447 63.158 0.00 0.00 0.00 5.12
5459 6085 0.391263 CTGGTGGCTAGGGTTTCGTC 60.391 60.000 0.00 0.00 0.00 4.20
5460 6086 1.125711 ACTGGTGGCTAGGGTTTCGT 61.126 55.000 0.00 0.00 0.00 3.85
5461 6087 0.391263 GACTGGTGGCTAGGGTTTCG 60.391 60.000 0.00 0.00 0.00 3.46
5462 6088 0.035343 GGACTGGTGGCTAGGGTTTC 60.035 60.000 0.00 0.00 0.00 2.78
5463 6089 0.475828 AGGACTGGTGGCTAGGGTTT 60.476 55.000 0.00 0.00 0.00 3.27
5464 6090 0.910088 GAGGACTGGTGGCTAGGGTT 60.910 60.000 0.00 0.00 0.00 4.11
5465 6091 1.306226 GAGGACTGGTGGCTAGGGT 60.306 63.158 0.00 0.00 0.00 4.34
5466 6092 2.066999 GGAGGACTGGTGGCTAGGG 61.067 68.421 0.00 0.00 0.00 3.53
5467 6093 2.066999 GGGAGGACTGGTGGCTAGG 61.067 68.421 0.00 0.00 0.00 3.02
5468 6094 1.306141 TGGGAGGACTGGTGGCTAG 60.306 63.158 0.00 0.00 0.00 3.42
5469 6095 1.612442 GTGGGAGGACTGGTGGCTA 60.612 63.158 0.00 0.00 0.00 3.93
5470 6096 2.930562 GTGGGAGGACTGGTGGCT 60.931 66.667 0.00 0.00 0.00 4.75
5471 6097 4.035102 GGTGGGAGGACTGGTGGC 62.035 72.222 0.00 0.00 0.00 5.01
5472 6098 3.330720 GGGTGGGAGGACTGGTGG 61.331 72.222 0.00 0.00 0.00 4.61
5473 6099 3.330720 GGGGTGGGAGGACTGGTG 61.331 72.222 0.00 0.00 0.00 4.17
5474 6100 3.542602 AGGGGTGGGAGGACTGGT 61.543 66.667 0.00 0.00 0.00 4.00
5475 6101 2.689034 GAGGGGTGGGAGGACTGG 60.689 72.222 0.00 0.00 0.00 4.00
5476 6102 2.689034 GGAGGGGTGGGAGGACTG 60.689 72.222 0.00 0.00 0.00 3.51
5477 6103 2.876858 AGGAGGGGTGGGAGGACT 60.877 66.667 0.00 0.00 0.00 3.85
5478 6104 2.365768 GAGGAGGGGTGGGAGGAC 60.366 72.222 0.00 0.00 0.00 3.85
5479 6105 3.695825 GGAGGAGGGGTGGGAGGA 61.696 72.222 0.00 0.00 0.00 3.71
5480 6106 3.274550 AAGGAGGAGGGGTGGGAGG 62.275 68.421 0.00 0.00 0.00 4.30
5481 6107 1.690985 GAAGGAGGAGGGGTGGGAG 60.691 68.421 0.00 0.00 0.00 4.30
5482 6108 2.454941 GAAGGAGGAGGGGTGGGA 59.545 66.667 0.00 0.00 0.00 4.37
5483 6109 2.692741 GGAAGGAGGAGGGGTGGG 60.693 72.222 0.00 0.00 0.00 4.61
5484 6110 2.692741 GGGAAGGAGGAGGGGTGG 60.693 72.222 0.00 0.00 0.00 4.61
5485 6111 2.692741 GGGGAAGGAGGAGGGGTG 60.693 72.222 0.00 0.00 0.00 4.61
5486 6112 4.040198 GGGGGAAGGAGGAGGGGT 62.040 72.222 0.00 0.00 0.00 4.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.