Multiple sequence alignment - TraesCS4A01G187100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G187100 chr4A 100.000 7801 0 0 1 7801 465900342 465892542 0.000000e+00 14406.0
1 TraesCS4A01G187100 chr4A 80.491 774 118 19 4 753 733887246 733886482 5.290000e-156 562.0
2 TraesCS4A01G187100 chr4B 97.123 1564 41 4 3255 4817 171148313 171146753 0.000000e+00 2636.0
3 TraesCS4A01G187100 chr4B 90.744 1815 81 29 6046 7801 171145472 171143686 0.000000e+00 2340.0
4 TraesCS4A01G187100 chr4B 94.307 1212 63 6 1353 2563 171149511 171148305 0.000000e+00 1851.0
5 TraesCS4A01G187100 chr4B 94.921 1142 36 10 4802 5943 171146586 171145467 0.000000e+00 1768.0
6 TraesCS4A01G187100 chr4B 96.114 386 15 0 857 1242 171149897 171149512 1.430000e-176 630.0
7 TraesCS4A01G187100 chr4B 80.945 656 104 16 88 732 81362470 81363115 4.200000e-137 499.0
8 TraesCS4A01G187100 chr4B 80.572 664 112 15 88 744 100844375 100843722 5.440000e-136 496.0
9 TraesCS4A01G187100 chr4D 92.926 1753 93 16 828 2560 111046006 111047747 0.000000e+00 2521.0
10 TraesCS4A01G187100 chr4D 91.982 1322 73 19 4621 5940 111049028 111050318 0.000000e+00 1823.0
11 TraesCS4A01G187100 chr4D 90.076 1310 93 14 3255 4553 111047742 111049025 0.000000e+00 1664.0
12 TraesCS4A01G187100 chr4D 90.844 972 41 17 6868 7801 111052424 111053385 0.000000e+00 1258.0
13 TraesCS4A01G187100 chr4D 92.910 818 40 13 6043 6849 111050316 111051126 0.000000e+00 1173.0
14 TraesCS4A01G187100 chr4D 92.745 703 37 10 2564 3254 289666009 289665309 0.000000e+00 1003.0
15 TraesCS4A01G187100 chr4D 81.166 669 101 21 88 744 443713297 443712642 1.500000e-141 514.0
16 TraesCS4A01G187100 chr5A 96.006 701 20 2 2560 3254 666155172 666155870 0.000000e+00 1133.0
17 TraesCS4A01G187100 chr5A 94.524 694 24 8 2564 3254 119083480 119084162 0.000000e+00 1059.0
18 TraesCS4A01G187100 chr5A 85.870 460 59 4 5451 5910 311938253 311938706 1.180000e-132 484.0
19 TraesCS4A01G187100 chr5A 79.119 704 119 20 6110 6801 311938792 311939479 1.980000e-125 460.0
20 TraesCS4A01G187100 chr5A 89.459 351 37 0 4990 5340 311937773 311938123 2.000000e-120 444.0
21 TraesCS4A01G187100 chr5A 85.039 254 22 9 1001 1240 311934715 311934966 2.170000e-60 244.0
22 TraesCS4A01G187100 chr5A 85.556 180 23 3 2229 2405 311936094 311936273 1.340000e-42 185.0
23 TraesCS4A01G187100 chr1A 95.299 702 22 8 2561 3258 261434049 261433355 0.000000e+00 1103.0
24 TraesCS4A01G187100 chr1A 94.084 693 30 6 2564 3254 573334909 573335592 0.000000e+00 1042.0
25 TraesCS4A01G187100 chr1A 93.314 703 31 10 2564 3254 143497351 143496653 0.000000e+00 1024.0
26 TraesCS4A01G187100 chr1A 93.043 115 8 0 5935 6049 370015807 370015693 1.350000e-37 169.0
27 TraesCS4A01G187100 chr7A 94.935 691 21 8 2564 3254 643182339 643181663 0.000000e+00 1070.0
28 TraesCS4A01G187100 chr6A 92.735 702 34 8 2564 3254 586390255 586389560 0.000000e+00 998.0
29 TraesCS4A01G187100 chr6A 94.828 116 4 1 5939 6054 496196860 496196747 6.220000e-41 180.0
30 TraesCS4A01G187100 chr6A 94.643 112 6 0 5936 6047 52024196 52024085 2.890000e-39 174.0
31 TraesCS4A01G187100 chr3A 91.865 713 38 14 2565 3257 45080996 45080284 0.000000e+00 977.0
32 TraesCS4A01G187100 chr3A 96.667 120 4 0 5927 6046 677884869 677884988 4.770000e-47 200.0
33 TraesCS4A01G187100 chr3A 93.333 120 8 0 5927 6046 677880134 677880253 2.240000e-40 178.0
34 TraesCS4A01G187100 chr3A 94.595 111 6 0 5938 6048 658713162 658713052 1.040000e-38 172.0
35 TraesCS4A01G187100 chr5D 82.690 959 139 18 4971 5910 241948206 241949156 0.000000e+00 826.0
36 TraesCS4A01G187100 chr5D 80.000 705 115 18 6110 6801 241949242 241949933 1.510000e-136 497.0
37 TraesCS4A01G187100 chr5D 90.710 183 16 1 3396 3578 241946708 241946889 7.820000e-60 243.0
38 TraesCS4A01G187100 chr5D 86.667 180 21 3 2229 2405 241946032 241946211 6.180000e-46 196.0
39 TraesCS4A01G187100 chr5D 89.865 148 11 3 1001 1146 241944599 241944744 3.720000e-43 187.0
40 TraesCS4A01G187100 chr5D 88.235 85 9 1 2 86 23872036 23872119 4.980000e-17 100.0
41 TraesCS4A01G187100 chr3B 80.130 770 118 24 3 749 5847293 5848050 6.890000e-150 542.0
42 TraesCS4A01G187100 chr1B 79.767 771 119 23 3 754 681155471 681154719 6.930000e-145 525.0
43 TraesCS4A01G187100 chr5B 80.981 673 107 16 88 747 492107378 492108042 1.500000e-141 514.0
44 TraesCS4A01G187100 chr5B 81.118 662 103 19 94 744 96905871 96905221 1.940000e-140 510.0
45 TraesCS4A01G187100 chr5B 85.217 460 62 4 5451 5910 256902044 256902497 1.190000e-127 468.0
46 TraesCS4A01G187100 chr5B 89.459 351 37 0 4990 5340 256901565 256901915 2.000000e-120 444.0
47 TraesCS4A01G187100 chr5B 82.600 523 71 13 6110 6620 256902583 256903097 2.000000e-120 444.0
48 TraesCS4A01G187100 chr5B 85.098 255 22 9 1001 1241 256898465 256898717 6.050000e-61 246.0
49 TraesCS4A01G187100 chr5B 85.556 180 23 3 2229 2405 256899893 256900072 1.340000e-42 185.0
50 TraesCS4A01G187100 chr5B 94.595 111 6 0 5938 6048 603798363 603798253 1.040000e-38 172.0
51 TraesCS4A01G187100 chr3D 81.164 653 105 15 88 732 577429746 577430388 6.980000e-140 508.0
52 TraesCS4A01G187100 chr7D 77.755 490 89 13 1 473 3464059 3464545 4.610000e-72 283.0
53 TraesCS4A01G187100 chr2A 98.148 108 2 0 5938 6045 478906665 478906772 1.030000e-43 189.0
54 TraesCS4A01G187100 chr2A 95.575 113 5 0 5933 6045 448553186 448553074 1.730000e-41 182.0
55 TraesCS4A01G187100 chr6D 88.889 63 6 1 19 80 7734919 7734857 8.390000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G187100 chr4A 465892542 465900342 7800 True 14406.0 14406 100.0000 1 7801 1 chr4A.!!$R1 7800
1 TraesCS4A01G187100 chr4A 733886482 733887246 764 True 562.0 562 80.4910 4 753 1 chr4A.!!$R2 749
2 TraesCS4A01G187100 chr4B 171143686 171149897 6211 True 1845.0 2636 94.6418 857 7801 5 chr4B.!!$R2 6944
3 TraesCS4A01G187100 chr4B 81362470 81363115 645 False 499.0 499 80.9450 88 732 1 chr4B.!!$F1 644
4 TraesCS4A01G187100 chr4B 100843722 100844375 653 True 496.0 496 80.5720 88 744 1 chr4B.!!$R1 656
5 TraesCS4A01G187100 chr4D 111046006 111053385 7379 False 1687.8 2521 91.7476 828 7801 5 chr4D.!!$F1 6973
6 TraesCS4A01G187100 chr4D 289665309 289666009 700 True 1003.0 1003 92.7450 2564 3254 1 chr4D.!!$R1 690
7 TraesCS4A01G187100 chr4D 443712642 443713297 655 True 514.0 514 81.1660 88 744 1 chr4D.!!$R2 656
8 TraesCS4A01G187100 chr5A 666155172 666155870 698 False 1133.0 1133 96.0060 2560 3254 1 chr5A.!!$F2 694
9 TraesCS4A01G187100 chr5A 119083480 119084162 682 False 1059.0 1059 94.5240 2564 3254 1 chr5A.!!$F1 690
10 TraesCS4A01G187100 chr5A 311934715 311939479 4764 False 363.4 484 85.0086 1001 6801 5 chr5A.!!$F3 5800
11 TraesCS4A01G187100 chr1A 261433355 261434049 694 True 1103.0 1103 95.2990 2561 3258 1 chr1A.!!$R2 697
12 TraesCS4A01G187100 chr1A 573334909 573335592 683 False 1042.0 1042 94.0840 2564 3254 1 chr1A.!!$F1 690
13 TraesCS4A01G187100 chr1A 143496653 143497351 698 True 1024.0 1024 93.3140 2564 3254 1 chr1A.!!$R1 690
14 TraesCS4A01G187100 chr7A 643181663 643182339 676 True 1070.0 1070 94.9350 2564 3254 1 chr7A.!!$R1 690
15 TraesCS4A01G187100 chr6A 586389560 586390255 695 True 998.0 998 92.7350 2564 3254 1 chr6A.!!$R3 690
16 TraesCS4A01G187100 chr3A 45080284 45080996 712 True 977.0 977 91.8650 2565 3257 1 chr3A.!!$R1 692
17 TraesCS4A01G187100 chr5D 241944599 241949933 5334 False 389.8 826 85.9864 1001 6801 5 chr5D.!!$F2 5800
18 TraesCS4A01G187100 chr3B 5847293 5848050 757 False 542.0 542 80.1300 3 749 1 chr3B.!!$F1 746
19 TraesCS4A01G187100 chr1B 681154719 681155471 752 True 525.0 525 79.7670 3 754 1 chr1B.!!$R1 751
20 TraesCS4A01G187100 chr5B 492107378 492108042 664 False 514.0 514 80.9810 88 747 1 chr5B.!!$F1 659
21 TraesCS4A01G187100 chr5B 96905221 96905871 650 True 510.0 510 81.1180 94 744 1 chr5B.!!$R1 650
22 TraesCS4A01G187100 chr5B 256898465 256903097 4632 False 357.4 468 85.5860 1001 6620 5 chr5B.!!$F2 5619
23 TraesCS4A01G187100 chr3D 577429746 577430388 642 False 508.0 508 81.1640 88 732 1 chr3D.!!$F1 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
609 634 0.033920 ATCGCTATTGCCATCGCTGA 59.966 50.000 0.00 0.00 35.36 4.26 F
785 810 0.034337 TGGCCGCGAGTCTACTTTTT 59.966 50.000 8.23 0.00 0.00 1.94 F
1717 1966 0.386731 CCACATTTTCCGTTCACGCC 60.387 55.000 0.00 0.00 38.18 5.68 F
2015 2352 1.846439 TGATCCCTCCAAATGGACTCC 59.154 52.381 0.00 0.00 39.78 3.85 F
2341 2782 2.625790 AGAAGTCATCCCTAAGCTAGCG 59.374 50.000 9.55 0.00 0.00 4.26 F
3742 4591 0.179026 ATATGCTGTGCTCTGGCCTG 60.179 55.000 3.32 2.92 37.74 4.85 F
3751 4622 0.533755 GCTCTGGCCTGCGATGTTAT 60.534 55.000 3.32 0.00 0.00 1.89 F
5342 6756 2.635915 TGTGGAAGAACTCACCGGTAAT 59.364 45.455 6.87 0.00 33.29 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1790 2039 1.002087 GACCAAGAACTCATCACCGGT 59.998 52.381 0.00 0.00 0.00 5.28 R
2486 2942 1.741770 GTTCCTAGGTGGCAGCACG 60.742 63.158 20.04 8.77 35.26 5.34 R
2864 3636 0.590682 CACATAGGCACGCAACAACA 59.409 50.000 0.00 0.00 0.00 3.33 R
2865 3637 0.591170 ACACATAGGCACGCAACAAC 59.409 50.000 0.00 0.00 0.00 3.32 R
4291 5499 0.034960 GAAGAAGAACTCCCTGGGGC 60.035 60.000 14.00 0.19 34.68 5.80 R
4779 6006 0.256177 GGCTAGCCTAGGGTGCTTTT 59.744 55.000 27.17 0.00 40.23 2.27 R
5348 6762 4.753233 TGACAAACAATTGGACAAACTGG 58.247 39.130 10.83 0.00 41.01 4.00 R
7249 10032 0.105964 TTGTCCAGTTGTCCTGTCCG 59.894 55.000 0.00 0.00 39.74 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.376808 TTGCACAACAAAACACCAGG 57.623 45.000 0.00 0.00 34.56 4.45
35 36 3.007398 ACAACAAAACACCAGGCAAGAAA 59.993 39.130 0.00 0.00 0.00 2.52
36 37 3.525268 ACAAAACACCAGGCAAGAAAG 57.475 42.857 0.00 0.00 0.00 2.62
55 56 9.748708 CAAGAAAGAAAATTACAATCAAGACCA 57.251 29.630 0.00 0.00 0.00 4.02
64 65 4.937201 ACAATCAAGACCAAAGAAACCC 57.063 40.909 0.00 0.00 0.00 4.11
68 69 1.341209 CAAGACCAAAGAAACCCCTGC 59.659 52.381 0.00 0.00 0.00 4.85
82 83 0.676466 CCCTGCGCTTGACACCAATA 60.676 55.000 9.73 0.00 0.00 1.90
92 102 1.606885 GACACCAATACCCGTCCGGA 61.607 60.000 0.00 0.00 37.50 5.14
106 116 0.616395 TCCGGAACCACCATAGCAGA 60.616 55.000 0.00 0.00 38.90 4.26
148 160 1.187087 GATCACCTTCTCACCCGAGT 58.813 55.000 0.00 0.00 40.44 4.18
150 162 1.420430 TCACCTTCTCACCCGAGTTT 58.580 50.000 0.00 0.00 40.44 2.66
152 164 0.317479 ACCTTCTCACCCGAGTTTCG 59.683 55.000 0.00 0.00 40.44 3.46
237 252 6.319658 AGCCATTAATGTTGAACGAATCAGAT 59.680 34.615 14.25 0.00 39.77 2.90
247 262 1.490693 CGAATCAGATCGGGGCAACG 61.491 60.000 0.00 0.00 39.12 4.10
289 304 4.195334 GATCTGGCACCCCCGCAT 62.195 66.667 0.00 0.00 35.87 4.73
335 350 2.210144 TACCTGCCTGCCATGAACCC 62.210 60.000 0.00 0.00 0.00 4.11
337 352 1.609239 CTGCCTGCCATGAACCCTA 59.391 57.895 0.00 0.00 0.00 3.53
359 381 1.628340 ACACGATCCACCATCTTCCAA 59.372 47.619 0.00 0.00 0.00 3.53
371 393 0.179234 TCTTCCAAATGCCGCCGATA 59.821 50.000 0.00 0.00 0.00 2.92
379 401 1.758440 ATGCCGCCGATACAGACCAT 61.758 55.000 0.00 0.00 0.00 3.55
383 405 2.870435 GCCGCCGATACAGACCATAATT 60.870 50.000 0.00 0.00 0.00 1.40
395 417 4.337274 CAGACCATAATTTGCATCTGCTCA 59.663 41.667 3.53 0.00 42.66 4.26
421 443 4.069232 CTCCCAAGCTCCGCGTCA 62.069 66.667 4.92 0.00 0.00 4.35
446 468 1.368850 GAGCAAACACCGTCGCAAC 60.369 57.895 0.00 0.00 0.00 4.17
525 550 5.757850 ACTTGAACAGACTGATTTCCAAC 57.242 39.130 10.08 0.00 0.00 3.77
526 551 5.192927 ACTTGAACAGACTGATTTCCAACA 58.807 37.500 10.08 0.00 0.00 3.33
530 555 4.104383 ACAGACTGATTTCCAACACCAT 57.896 40.909 10.08 0.00 0.00 3.55
534 559 4.082125 GACTGATTTCCAACACCATTCCT 58.918 43.478 0.00 0.00 0.00 3.36
535 560 5.014123 AGACTGATTTCCAACACCATTCCTA 59.986 40.000 0.00 0.00 0.00 2.94
547 572 5.205056 ACACCATTCCTAAACAAAAGGTCA 58.795 37.500 0.00 0.00 35.48 4.02
548 573 5.838521 ACACCATTCCTAAACAAAAGGTCAT 59.161 36.000 0.00 0.00 35.48 3.06
579 604 4.123506 GTCGGGAAAGGATCTGAAGATTC 58.876 47.826 0.00 0.00 34.37 2.52
580 605 4.033709 TCGGGAAAGGATCTGAAGATTCT 58.966 43.478 0.00 0.00 42.06 2.40
589 614 8.449251 AAGGATCTGAAGATTCTTTATTCAGC 57.551 34.615 7.88 0.00 45.63 4.26
590 615 7.571919 AGGATCTGAAGATTCTTTATTCAGCA 58.428 34.615 8.86 0.73 46.11 4.41
591 616 8.219178 AGGATCTGAAGATTCTTTATTCAGCAT 58.781 33.333 8.86 4.72 46.11 3.79
592 617 8.505625 GGATCTGAAGATTCTTTATTCAGCATC 58.494 37.037 8.86 11.26 46.11 3.91
593 618 7.474398 TCTGAAGATTCTTTATTCAGCATCG 57.526 36.000 8.86 0.00 46.11 3.84
594 619 6.018425 TCTGAAGATTCTTTATTCAGCATCGC 60.018 38.462 8.86 0.00 46.11 4.58
595 620 5.819379 TGAAGATTCTTTATTCAGCATCGCT 59.181 36.000 0.00 0.00 40.77 4.93
596 621 6.986231 TGAAGATTCTTTATTCAGCATCGCTA 59.014 34.615 0.00 0.00 36.40 4.26
597 622 7.658982 TGAAGATTCTTTATTCAGCATCGCTAT 59.341 33.333 0.00 0.00 36.40 2.97
598 623 7.976135 AGATTCTTTATTCAGCATCGCTATT 57.024 32.000 0.00 0.00 36.40 1.73
599 624 7.804712 AGATTCTTTATTCAGCATCGCTATTG 58.195 34.615 0.00 0.00 36.40 1.90
600 625 5.348418 TCTTTATTCAGCATCGCTATTGC 57.652 39.130 0.00 0.00 36.40 3.56
601 626 4.214119 TCTTTATTCAGCATCGCTATTGCC 59.786 41.667 0.00 0.00 41.06 4.52
602 627 1.971481 ATTCAGCATCGCTATTGCCA 58.029 45.000 0.00 0.00 41.06 4.92
603 628 1.971481 TTCAGCATCGCTATTGCCAT 58.029 45.000 0.00 0.00 41.06 4.40
604 629 1.516161 TCAGCATCGCTATTGCCATC 58.484 50.000 0.00 0.00 41.06 3.51
605 630 0.165295 CAGCATCGCTATTGCCATCG 59.835 55.000 0.00 0.00 41.06 3.84
606 631 1.154338 GCATCGCTATTGCCATCGC 60.154 57.895 0.00 0.00 33.95 4.58
607 632 1.572085 GCATCGCTATTGCCATCGCT 61.572 55.000 0.00 0.00 33.95 4.93
608 633 0.165295 CATCGCTATTGCCATCGCTG 59.835 55.000 0.00 0.00 35.36 5.18
609 634 0.033920 ATCGCTATTGCCATCGCTGA 59.966 50.000 0.00 0.00 35.36 4.26
610 635 0.179086 TCGCTATTGCCATCGCTGAA 60.179 50.000 0.00 0.00 35.36 3.02
611 636 0.234106 CGCTATTGCCATCGCTGAAG 59.766 55.000 0.00 0.00 35.36 3.02
612 637 0.040603 GCTATTGCCATCGCTGAAGC 60.041 55.000 0.00 0.00 35.36 3.86
613 638 0.590195 CTATTGCCATCGCTGAAGCC 59.410 55.000 0.00 0.00 37.91 4.35
614 639 0.819259 TATTGCCATCGCTGAAGCCC 60.819 55.000 0.00 0.00 37.91 5.19
615 640 2.842188 ATTGCCATCGCTGAAGCCCA 62.842 55.000 0.00 0.00 37.91 5.36
616 641 3.207669 GCCATCGCTGAAGCCCAG 61.208 66.667 0.00 0.00 45.67 4.45
617 642 2.586245 CCATCGCTGAAGCCCAGA 59.414 61.111 7.80 0.00 45.78 3.86
618 643 1.817099 CCATCGCTGAAGCCCAGAC 60.817 63.158 7.80 0.00 45.78 3.51
619 644 2.169789 CATCGCTGAAGCCCAGACG 61.170 63.158 7.80 9.94 45.78 4.18
620 645 2.351244 ATCGCTGAAGCCCAGACGA 61.351 57.895 17.90 17.90 46.71 4.20
621 646 1.680522 ATCGCTGAAGCCCAGACGAT 61.681 55.000 19.68 19.68 46.52 3.73
622 647 2.169789 CGCTGAAGCCCAGACGATG 61.170 63.158 7.80 0.00 45.78 3.84
623 648 1.219124 GCTGAAGCCCAGACGATGA 59.781 57.895 7.80 0.00 45.78 2.92
624 649 0.391661 GCTGAAGCCCAGACGATGAA 60.392 55.000 7.80 0.00 45.78 2.57
625 650 1.363744 CTGAAGCCCAGACGATGAAC 58.636 55.000 0.00 0.00 45.78 3.18
626 651 0.684535 TGAAGCCCAGACGATGAACA 59.315 50.000 0.00 0.00 0.00 3.18
627 652 1.071542 TGAAGCCCAGACGATGAACAA 59.928 47.619 0.00 0.00 0.00 2.83
628 653 1.464997 GAAGCCCAGACGATGAACAAC 59.535 52.381 0.00 0.00 0.00 3.32
629 654 0.687354 AGCCCAGACGATGAACAACT 59.313 50.000 0.00 0.00 0.00 3.16
630 655 0.798776 GCCCAGACGATGAACAACTG 59.201 55.000 0.00 0.00 0.00 3.16
631 656 1.608025 GCCCAGACGATGAACAACTGA 60.608 52.381 0.00 0.00 0.00 3.41
632 657 2.766313 CCCAGACGATGAACAACTGAA 58.234 47.619 0.00 0.00 0.00 3.02
633 658 3.138304 CCCAGACGATGAACAACTGAAA 58.862 45.455 0.00 0.00 0.00 2.69
634 659 3.563808 CCCAGACGATGAACAACTGAAAA 59.436 43.478 0.00 0.00 0.00 2.29
635 660 4.036262 CCCAGACGATGAACAACTGAAAAA 59.964 41.667 0.00 0.00 0.00 1.94
636 661 4.970003 CCAGACGATGAACAACTGAAAAAC 59.030 41.667 0.00 0.00 0.00 2.43
637 662 4.970003 CAGACGATGAACAACTGAAAAACC 59.030 41.667 0.00 0.00 0.00 3.27
638 663 4.881850 AGACGATGAACAACTGAAAAACCT 59.118 37.500 0.00 0.00 0.00 3.50
639 664 6.018262 CAGACGATGAACAACTGAAAAACCTA 60.018 38.462 0.00 0.00 0.00 3.08
640 665 6.710744 AGACGATGAACAACTGAAAAACCTAT 59.289 34.615 0.00 0.00 0.00 2.57
641 666 7.876068 AGACGATGAACAACTGAAAAACCTATA 59.124 33.333 0.00 0.00 0.00 1.31
642 667 8.385898 ACGATGAACAACTGAAAAACCTATAA 57.614 30.769 0.00 0.00 0.00 0.98
643 668 8.504005 ACGATGAACAACTGAAAAACCTATAAG 58.496 33.333 0.00 0.00 0.00 1.73
644 669 7.481798 CGATGAACAACTGAAAAACCTATAAGC 59.518 37.037 0.00 0.00 0.00 3.09
645 670 7.817418 TGAACAACTGAAAAACCTATAAGCT 57.183 32.000 0.00 0.00 0.00 3.74
646 671 8.911918 TGAACAACTGAAAAACCTATAAGCTA 57.088 30.769 0.00 0.00 0.00 3.32
647 672 8.780249 TGAACAACTGAAAAACCTATAAGCTAC 58.220 33.333 0.00 0.00 0.00 3.58
648 673 8.919777 AACAACTGAAAAACCTATAAGCTACT 57.080 30.769 0.00 0.00 0.00 2.57
649 674 8.324163 ACAACTGAAAAACCTATAAGCTACTG 57.676 34.615 0.00 0.00 0.00 2.74
650 675 8.154856 ACAACTGAAAAACCTATAAGCTACTGA 58.845 33.333 0.00 0.00 0.00 3.41
651 676 9.167311 CAACTGAAAAACCTATAAGCTACTGAT 57.833 33.333 0.00 0.00 0.00 2.90
652 677 8.723942 ACTGAAAAACCTATAAGCTACTGATG 57.276 34.615 0.00 0.00 0.00 3.07
653 678 8.540388 ACTGAAAAACCTATAAGCTACTGATGA 58.460 33.333 0.00 0.00 0.00 2.92
654 679 8.718102 TGAAAAACCTATAAGCTACTGATGAC 57.282 34.615 0.00 0.00 0.00 3.06
655 680 8.540388 TGAAAAACCTATAAGCTACTGATGACT 58.460 33.333 0.00 0.00 0.00 3.41
660 685 9.819267 AACCTATAAGCTACTGATGACTAAAAC 57.181 33.333 0.00 0.00 0.00 2.43
661 686 8.136165 ACCTATAAGCTACTGATGACTAAAACG 58.864 37.037 0.00 0.00 0.00 3.60
662 687 8.350722 CCTATAAGCTACTGATGACTAAAACGA 58.649 37.037 0.00 0.00 0.00 3.85
663 688 9.900710 CTATAAGCTACTGATGACTAAAACGAT 57.099 33.333 0.00 0.00 0.00 3.73
666 691 8.997621 AAGCTACTGATGACTAAAACGATTAA 57.002 30.769 0.00 0.00 0.00 1.40
667 692 8.408743 AGCTACTGATGACTAAAACGATTAAC 57.591 34.615 0.00 0.00 0.00 2.01
668 693 8.033038 AGCTACTGATGACTAAAACGATTAACA 58.967 33.333 0.00 0.00 0.00 2.41
669 694 8.108782 GCTACTGATGACTAAAACGATTAACAC 58.891 37.037 0.00 0.00 0.00 3.32
670 695 7.045725 ACTGATGACTAAAACGATTAACACG 57.954 36.000 0.00 2.96 0.00 4.49
671 696 5.849858 TGATGACTAAAACGATTAACACGC 58.150 37.500 0.00 0.00 0.00 5.34
672 697 5.405873 TGATGACTAAAACGATTAACACGCA 59.594 36.000 0.00 0.00 0.00 5.24
673 698 5.849357 TGACTAAAACGATTAACACGCAT 57.151 34.783 0.00 0.00 0.00 4.73
674 699 5.613812 TGACTAAAACGATTAACACGCATG 58.386 37.500 0.00 0.00 0.00 4.06
675 700 4.965062 ACTAAAACGATTAACACGCATGG 58.035 39.130 0.00 0.00 0.00 3.66
676 701 2.911819 AAACGATTAACACGCATGGG 57.088 45.000 8.44 8.44 0.00 4.00
677 702 2.102070 AACGATTAACACGCATGGGA 57.898 45.000 17.76 0.00 0.00 4.37
678 703 2.325583 ACGATTAACACGCATGGGAT 57.674 45.000 17.76 4.86 0.00 3.85
679 704 2.639065 ACGATTAACACGCATGGGATT 58.361 42.857 17.76 12.25 0.00 3.01
680 705 2.354510 ACGATTAACACGCATGGGATTG 59.645 45.455 17.76 7.79 0.00 2.67
681 706 2.286950 CGATTAACACGCATGGGATTGG 60.287 50.000 17.76 5.47 0.00 3.16
682 707 1.468985 TTAACACGCATGGGATTGGG 58.531 50.000 17.76 3.07 35.79 4.12
683 708 0.329931 TAACACGCATGGGATTGGGT 59.670 50.000 17.76 4.22 42.80 4.51
685 710 3.086143 ACGCATGGGATTGGGTGA 58.914 55.556 17.76 0.00 40.79 4.02
686 711 1.378514 ACGCATGGGATTGGGTGAC 60.379 57.895 17.76 0.00 40.79 3.67
699 724 4.217112 GTGACCCCTCTCACCACT 57.783 61.111 0.00 0.00 35.44 4.00
700 725 1.674057 GTGACCCCTCTCACCACTG 59.326 63.158 0.00 0.00 35.44 3.66
701 726 0.832135 GTGACCCCTCTCACCACTGA 60.832 60.000 0.00 0.00 35.44 3.41
702 727 0.832135 TGACCCCTCTCACCACTGAC 60.832 60.000 0.00 0.00 0.00 3.51
703 728 0.832135 GACCCCTCTCACCACTGACA 60.832 60.000 0.00 0.00 0.00 3.58
704 729 0.399949 ACCCCTCTCACCACTGACAA 60.400 55.000 0.00 0.00 0.00 3.18
705 730 0.035458 CCCCTCTCACCACTGACAAC 59.965 60.000 0.00 0.00 0.00 3.32
706 731 0.035458 CCCTCTCACCACTGACAACC 59.965 60.000 0.00 0.00 0.00 3.77
707 732 0.319900 CCTCTCACCACTGACAACCG 60.320 60.000 0.00 0.00 0.00 4.44
708 733 0.673985 CTCTCACCACTGACAACCGA 59.326 55.000 0.00 0.00 0.00 4.69
709 734 1.273606 CTCTCACCACTGACAACCGAT 59.726 52.381 0.00 0.00 0.00 4.18
710 735 1.000843 TCTCACCACTGACAACCGATG 59.999 52.381 0.00 0.00 0.00 3.84
720 745 1.438651 ACAACCGATGTCGTTGATGG 58.561 50.000 17.84 0.48 37.96 3.51
721 746 1.001520 ACAACCGATGTCGTTGATGGA 59.998 47.619 17.84 0.00 37.96 3.41
722 747 1.660607 CAACCGATGTCGTTGATGGAG 59.339 52.381 1.44 0.00 37.74 3.86
723 748 0.175760 ACCGATGTCGTTGATGGAGG 59.824 55.000 1.44 0.00 37.74 4.30
724 749 0.530650 CCGATGTCGTTGATGGAGGG 60.531 60.000 1.44 0.00 37.74 4.30
725 750 0.530650 CGATGTCGTTGATGGAGGGG 60.531 60.000 0.00 0.00 34.11 4.79
726 751 0.830648 GATGTCGTTGATGGAGGGGA 59.169 55.000 0.00 0.00 0.00 4.81
727 752 0.833287 ATGTCGTTGATGGAGGGGAG 59.167 55.000 0.00 0.00 0.00 4.30
728 753 1.153349 GTCGTTGATGGAGGGGAGC 60.153 63.158 0.00 0.00 0.00 4.70
729 754 2.190578 CGTTGATGGAGGGGAGCC 59.809 66.667 0.00 0.00 0.00 4.70
730 755 2.190578 GTTGATGGAGGGGAGCCG 59.809 66.667 0.00 0.00 0.00 5.52
731 756 3.797353 TTGATGGAGGGGAGCCGC 61.797 66.667 0.00 0.00 0.00 6.53
732 757 4.804420 TGATGGAGGGGAGCCGCT 62.804 66.667 5.72 5.72 42.05 5.52
733 758 2.524394 GATGGAGGGGAGCCGCTA 60.524 66.667 6.04 0.00 39.38 4.26
734 759 2.525381 ATGGAGGGGAGCCGCTAG 60.525 66.667 6.04 0.00 39.38 3.42
735 760 3.088090 ATGGAGGGGAGCCGCTAGA 62.088 63.158 6.04 0.00 39.38 2.43
736 761 2.915137 GGAGGGGAGCCGCTAGAG 60.915 72.222 6.04 0.00 39.38 2.43
737 762 2.915137 GAGGGGAGCCGCTAGAGG 60.915 72.222 8.37 8.37 39.38 3.69
738 763 3.430497 AGGGGAGCCGCTAGAGGA 61.430 66.667 17.75 0.00 37.46 3.71
739 764 3.228017 GGGGAGCCGCTAGAGGAC 61.228 72.222 17.75 8.98 0.00 3.85
740 765 3.597728 GGGAGCCGCTAGAGGACG 61.598 72.222 17.75 0.00 0.00 4.79
763 788 3.210857 CGGAGCGAAACTCTTTGGA 57.789 52.632 0.00 0.00 45.48 3.53
764 789 1.071605 CGGAGCGAAACTCTTTGGAG 58.928 55.000 0.00 0.00 45.48 3.86
765 790 1.443802 GGAGCGAAACTCTTTGGAGG 58.556 55.000 0.00 0.00 45.48 4.30
766 791 1.270893 GGAGCGAAACTCTTTGGAGGT 60.271 52.381 0.00 0.00 45.48 3.85
767 792 1.801178 GAGCGAAACTCTTTGGAGGTG 59.199 52.381 0.00 0.00 38.79 4.00
768 793 0.875059 GCGAAACTCTTTGGAGGTGG 59.125 55.000 0.00 0.00 38.79 4.61
769 794 0.875059 CGAAACTCTTTGGAGGTGGC 59.125 55.000 0.00 0.00 38.79 5.01
770 795 1.248486 GAAACTCTTTGGAGGTGGCC 58.752 55.000 0.00 0.00 38.79 5.36
771 796 0.537371 AAACTCTTTGGAGGTGGCCG 60.537 55.000 0.00 0.00 38.79 6.13
772 797 2.747855 CTCTTTGGAGGTGGCCGC 60.748 66.667 8.12 8.12 36.03 6.53
773 798 4.697756 TCTTTGGAGGTGGCCGCG 62.698 66.667 10.86 0.00 0.00 6.46
774 799 4.697756 CTTTGGAGGTGGCCGCGA 62.698 66.667 8.23 0.00 0.00 5.87
775 800 4.697756 TTTGGAGGTGGCCGCGAG 62.698 66.667 8.23 0.00 0.00 5.03
779 804 3.138798 GAGGTGGCCGCGAGTCTA 61.139 66.667 8.23 0.00 0.00 2.59
780 805 3.412879 GAGGTGGCCGCGAGTCTAC 62.413 68.421 8.23 4.19 0.00 2.59
781 806 3.450115 GGTGGCCGCGAGTCTACT 61.450 66.667 8.23 0.00 0.00 2.57
782 807 2.572284 GTGGCCGCGAGTCTACTT 59.428 61.111 8.23 0.00 0.00 2.24
783 808 1.080025 GTGGCCGCGAGTCTACTTT 60.080 57.895 8.23 0.00 0.00 2.66
784 809 0.669625 GTGGCCGCGAGTCTACTTTT 60.670 55.000 8.23 0.00 0.00 2.27
785 810 0.034337 TGGCCGCGAGTCTACTTTTT 59.966 50.000 8.23 0.00 0.00 1.94
807 832 6.687081 TTTTTCTTCCGCTGAAAGTAAGAA 57.313 33.333 0.00 0.00 37.46 2.52
808 833 6.877611 TTTTCTTCCGCTGAAAGTAAGAAT 57.122 33.333 0.00 0.00 38.31 2.40
809 834 7.972832 TTTTCTTCCGCTGAAAGTAAGAATA 57.027 32.000 0.00 0.00 38.31 1.75
810 835 6.963049 TTCTTCCGCTGAAAGTAAGAATAC 57.037 37.500 0.00 0.00 35.74 1.89
811 836 6.032956 TCTTCCGCTGAAAGTAAGAATACA 57.967 37.500 0.00 0.00 35.30 2.29
812 837 6.640518 TCTTCCGCTGAAAGTAAGAATACAT 58.359 36.000 0.00 0.00 35.30 2.29
813 838 7.103641 TCTTCCGCTGAAAGTAAGAATACATT 58.896 34.615 0.00 0.00 35.30 2.71
814 839 7.606456 TCTTCCGCTGAAAGTAAGAATACATTT 59.394 33.333 0.00 0.00 35.30 2.32
815 840 7.681939 TCCGCTGAAAGTAAGAATACATTTT 57.318 32.000 0.00 0.00 35.30 1.82
816 841 8.106247 TCCGCTGAAAGTAAGAATACATTTTT 57.894 30.769 0.00 0.00 35.30 1.94
817 842 9.221933 TCCGCTGAAAGTAAGAATACATTTTTA 57.778 29.630 0.00 0.00 35.30 1.52
818 843 9.490663 CCGCTGAAAGTAAGAATACATTTTTAG 57.509 33.333 0.00 0.00 35.30 1.85
870 900 5.062308 GCTCTTTGAGAAACACGTATTCGAT 59.938 40.000 0.00 0.00 40.62 3.59
874 904 6.880822 TTGAGAAACACGTATTCGATAAGG 57.119 37.500 0.00 0.00 40.62 2.69
878 908 7.762615 TGAGAAACACGTATTCGATAAGGAAAT 59.237 33.333 0.00 0.00 40.62 2.17
890 920 8.841444 TTCGATAAGGAAATACGTACACTAAC 57.159 34.615 0.00 0.00 0.00 2.34
917 947 1.865340 CCTAAAATACGCCGCCTTCTC 59.135 52.381 0.00 0.00 0.00 2.87
1280 1437 2.358898 TGCTGCAACTCCTTTCAGTTTC 59.641 45.455 0.00 0.00 34.17 2.78
1281 1438 2.358898 GCTGCAACTCCTTTCAGTTTCA 59.641 45.455 0.00 0.00 34.17 2.69
1283 1440 3.620488 TGCAACTCCTTTCAGTTTCAGT 58.380 40.909 0.00 0.00 34.17 3.41
1285 1442 4.462483 TGCAACTCCTTTCAGTTTCAGTTT 59.538 37.500 0.00 0.00 34.17 2.66
1286 1443 5.650266 TGCAACTCCTTTCAGTTTCAGTTTA 59.350 36.000 0.00 0.00 34.17 2.01
1287 1444 6.183360 TGCAACTCCTTTCAGTTTCAGTTTAG 60.183 38.462 0.00 0.00 34.17 1.85
1288 1445 6.729187 CAACTCCTTTCAGTTTCAGTTTAGG 58.271 40.000 0.00 0.00 34.17 2.69
1461 1694 5.463724 CCTCGTAGCTCCAAATGAGATTAAC 59.536 44.000 5.20 0.00 44.42 2.01
1543 1777 4.236527 TCCTCCCTTAAATTCCTTGCTC 57.763 45.455 0.00 0.00 0.00 4.26
1631 1866 7.094334 ACAGAAGCTAAAACTTACCCAATTAGC 60.094 37.037 7.54 7.54 45.43 3.09
1717 1966 0.386731 CCACATTTTCCGTTCACGCC 60.387 55.000 0.00 0.00 38.18 5.68
1790 2039 2.204291 ACCCCCAATCCTCTGGCA 60.204 61.111 0.00 0.00 34.88 4.92
1819 2068 1.865340 GAGTTCTTGGTCGTCCACAAC 59.135 52.381 0.00 7.64 44.22 3.32
1857 2106 4.899352 ATGAGGTCTGCTTACTCTGTTT 57.101 40.909 0.00 0.00 32.58 2.83
1864 2113 5.334414 GGTCTGCTTACTCTGTTTTGTGATG 60.334 44.000 0.00 0.00 0.00 3.07
1968 2305 5.469579 TGCCAGTGGGGACTATAATAAGTA 58.530 41.667 12.15 0.00 40.01 2.24
2015 2352 1.846439 TGATCCCTCCAAATGGACTCC 59.154 52.381 0.00 0.00 39.78 3.85
2341 2782 2.625790 AGAAGTCATCCCTAAGCTAGCG 59.374 50.000 9.55 0.00 0.00 4.26
2455 2897 4.635765 CCGCTTGTTCTTTATCTGGATCAA 59.364 41.667 0.00 0.00 0.00 2.57
2456 2898 5.123820 CCGCTTGTTCTTTATCTGGATCAAA 59.876 40.000 0.00 0.00 0.00 2.69
2486 2942 8.483758 TCCATAGTTTCTTTGGAGAAGTATACC 58.516 37.037 0.00 0.00 42.55 2.73
2962 3775 3.394032 TTGCTGCGTGTGTGTGTGC 62.394 57.895 0.00 0.00 0.00 4.57
2968 3781 3.860125 GTGTGTGTGTGCGCGTGT 61.860 61.111 8.43 0.00 0.00 4.49
3258 4099 8.902735 GTGTCAAATAAGGAATTTTCTCGAAAC 58.097 33.333 0.00 0.00 35.54 2.78
3259 4100 8.846211 TGTCAAATAAGGAATTTTCTCGAAACT 58.154 29.630 0.00 0.00 35.54 2.66
3296 4137 2.671070 CTGAACGTGGCAGGGGAT 59.329 61.111 12.33 0.00 0.00 3.85
3714 4563 3.595173 ACAAACTGGGTTTCTGTTTTGC 58.405 40.909 0.00 0.00 42.86 3.68
3742 4591 0.179026 ATATGCTGTGCTCTGGCCTG 60.179 55.000 3.32 2.92 37.74 4.85
3743 4592 2.881539 TATGCTGTGCTCTGGCCTGC 62.882 60.000 3.32 6.66 37.74 4.85
3750 4621 1.153369 GCTCTGGCCTGCGATGTTA 60.153 57.895 3.32 0.00 0.00 2.41
3751 4622 0.533755 GCTCTGGCCTGCGATGTTAT 60.534 55.000 3.32 0.00 0.00 1.89
3793 4664 6.481644 AGCTTTCTAAGATGTGCAGTATAAGC 59.518 38.462 0.00 0.00 34.80 3.09
4291 5499 5.010922 TCAAATCCCTGACAACAAATGGAAG 59.989 40.000 0.00 0.00 0.00 3.46
4599 5826 3.896648 AGTTTGACTACATTTGCCACG 57.103 42.857 0.00 0.00 0.00 4.94
5070 6484 3.128415 GGAAAAAGAGAAGCCAGCATCTC 59.872 47.826 15.26 15.26 40.04 2.75
5291 6705 4.766375 TCTTTATTGGCTGTGGTACTAGC 58.234 43.478 8.24 8.24 38.22 3.42
5333 6747 3.002348 CACGACCTTTTGTGGAAGAACTC 59.998 47.826 0.00 0.00 33.84 3.01
5342 6756 2.635915 TGTGGAAGAACTCACCGGTAAT 59.364 45.455 6.87 0.00 33.29 1.89
5348 6762 5.579904 GGAAGAACTCACCGGTAATTCTAAC 59.420 44.000 21.22 17.95 0.00 2.34
5367 6781 6.568869 TCTAACCAGTTTGTCCAATTGTTTG 58.431 36.000 4.43 0.00 0.00 2.93
5378 6792 5.769162 TGTCCAATTGTTTGTCATGATCTGA 59.231 36.000 4.43 0.00 0.00 3.27
5379 6793 6.264970 TGTCCAATTGTTTGTCATGATCTGAA 59.735 34.615 4.43 0.00 35.07 3.02
5387 6801 8.355272 TGTTTGTCATGATCTGAATTGTTTTG 57.645 30.769 0.00 0.00 35.07 2.44
5388 6802 8.196103 TGTTTGTCATGATCTGAATTGTTTTGA 58.804 29.630 0.00 0.00 35.07 2.69
5403 6821 9.403110 GAATTGTTTTGATATATCATCAGTGCC 57.597 33.333 16.06 6.10 36.56 5.01
5404 6822 8.701908 ATTGTTTTGATATATCATCAGTGCCT 57.298 30.769 16.06 0.00 36.56 4.75
5426 6844 9.857656 TGCCTTAAGTATTTAGCTAGTACTCTA 57.142 33.333 16.61 10.85 0.00 2.43
5439 6857 8.454570 AGCTAGTACTCTAGTGATCTTAAACC 57.545 38.462 0.00 0.00 43.86 3.27
5440 6858 8.276477 AGCTAGTACTCTAGTGATCTTAAACCT 58.724 37.037 0.00 0.00 43.86 3.50
5444 6862 9.091220 AGTACTCTAGTGATCTTAAACCTTTGT 57.909 33.333 0.00 0.00 0.00 2.83
5448 6866 8.197592 TCTAGTGATCTTAAACCTTTGTACCA 57.802 34.615 0.00 0.00 0.00 3.25
5899 7347 7.044798 AGTCTATAATCACTGGTCTTTCAAGC 58.955 38.462 0.00 0.00 0.00 4.01
5940 7390 4.839121 TGGATCAACAACCTACCATGTAC 58.161 43.478 0.00 0.00 0.00 2.90
5941 7391 4.534500 TGGATCAACAACCTACCATGTACT 59.466 41.667 0.00 0.00 0.00 2.73
5942 7392 5.116882 GGATCAACAACCTACCATGTACTC 58.883 45.833 0.00 0.00 0.00 2.59
5943 7393 4.546829 TCAACAACCTACCATGTACTCC 57.453 45.455 0.00 0.00 0.00 3.85
5944 7394 3.262405 TCAACAACCTACCATGTACTCCC 59.738 47.826 0.00 0.00 0.00 4.30
5945 7395 3.200958 ACAACCTACCATGTACTCCCT 57.799 47.619 0.00 0.00 0.00 4.20
5946 7396 3.105283 ACAACCTACCATGTACTCCCTC 58.895 50.000 0.00 0.00 0.00 4.30
5947 7397 2.434702 CAACCTACCATGTACTCCCTCC 59.565 54.545 0.00 0.00 0.00 4.30
5948 7398 1.329256 CCTACCATGTACTCCCTCCG 58.671 60.000 0.00 0.00 0.00 4.63
5949 7399 1.411216 CCTACCATGTACTCCCTCCGT 60.411 57.143 0.00 0.00 0.00 4.69
5950 7400 2.385803 CTACCATGTACTCCCTCCGTT 58.614 52.381 0.00 0.00 0.00 4.44
5951 7401 1.192428 ACCATGTACTCCCTCCGTTC 58.808 55.000 0.00 0.00 0.00 3.95
5952 7402 0.464452 CCATGTACTCCCTCCGTTCC 59.536 60.000 0.00 0.00 0.00 3.62
5953 7403 1.191535 CATGTACTCCCTCCGTTCCA 58.808 55.000 0.00 0.00 0.00 3.53
5954 7404 1.553248 CATGTACTCCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
5955 7405 1.719529 TGTACTCCCTCCGTTCCAAA 58.280 50.000 0.00 0.00 0.00 3.28
5956 7406 2.262637 TGTACTCCCTCCGTTCCAAAT 58.737 47.619 0.00 0.00 0.00 2.32
5957 7407 2.640826 TGTACTCCCTCCGTTCCAAATT 59.359 45.455 0.00 0.00 0.00 1.82
5958 7408 3.839490 TGTACTCCCTCCGTTCCAAATTA 59.161 43.478 0.00 0.00 0.00 1.40
5959 7409 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
5960 7410 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
5961 7411 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
5962 7412 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
5963 7413 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
5964 7414 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
5965 7415 3.368116 CCTCCGTTCCAAATTACTCGTCT 60.368 47.826 0.00 0.00 0.00 4.18
5966 7416 4.243270 CTCCGTTCCAAATTACTCGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
5967 7417 5.389859 TCCGTTCCAAATTACTCGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
5968 7418 5.404946 TCCGTTCCAAATTACTCGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
5969 7419 5.183713 TCCGTTCCAAATTACTCGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
5970 7420 5.865552 CCGTTCCAAATTACTCGTCTTAGAA 59.134 40.000 0.00 0.00 0.00 2.10
5971 7421 6.366877 CCGTTCCAAATTACTCGTCTTAGAAA 59.633 38.462 0.00 0.00 0.00 2.52
5972 7422 7.064253 CCGTTCCAAATTACTCGTCTTAGAAAT 59.936 37.037 0.00 0.00 0.00 2.17
5973 7423 7.898309 CGTTCCAAATTACTCGTCTTAGAAATG 59.102 37.037 0.00 0.00 0.00 2.32
5974 7424 7.843490 TCCAAATTACTCGTCTTAGAAATGG 57.157 36.000 0.00 0.00 0.00 3.16
5975 7425 7.617225 TCCAAATTACTCGTCTTAGAAATGGA 58.383 34.615 0.00 0.00 0.00 3.41
5976 7426 8.265055 TCCAAATTACTCGTCTTAGAAATGGAT 58.735 33.333 0.00 0.00 0.00 3.41
5977 7427 8.338259 CCAAATTACTCGTCTTAGAAATGGATG 58.662 37.037 0.00 0.00 0.00 3.51
5978 7428 8.883731 CAAATTACTCGTCTTAGAAATGGATGT 58.116 33.333 0.00 0.00 0.00 3.06
5981 7431 9.915629 ATTACTCGTCTTAGAAATGGATGTATC 57.084 33.333 0.00 0.00 0.00 2.24
5982 7432 7.589958 ACTCGTCTTAGAAATGGATGTATCT 57.410 36.000 0.00 0.00 0.00 1.98
5983 7433 8.693120 ACTCGTCTTAGAAATGGATGTATCTA 57.307 34.615 0.00 0.00 0.00 1.98
5984 7434 8.569641 ACTCGTCTTAGAAATGGATGTATCTAC 58.430 37.037 0.00 0.00 0.00 2.59
5985 7435 8.459911 TCGTCTTAGAAATGGATGTATCTACA 57.540 34.615 0.00 0.00 40.98 2.74
5986 7436 8.909923 TCGTCTTAGAAATGGATGTATCTACAA 58.090 33.333 0.00 0.00 39.99 2.41
5987 7437 9.698309 CGTCTTAGAAATGGATGTATCTACAAT 57.302 33.333 0.00 0.00 39.99 2.71
6019 7469 8.655935 ACATCTAGATACATCCATACATGTGA 57.344 34.615 9.11 0.00 37.57 3.58
6020 7470 8.526978 ACATCTAGATACATCCATACATGTGAC 58.473 37.037 9.11 0.00 37.57 3.67
6021 7471 8.526147 CATCTAGATACATCCATACATGTGACA 58.474 37.037 9.11 0.00 37.57 3.58
6022 7472 8.477419 TCTAGATACATCCATACATGTGACAA 57.523 34.615 9.11 0.00 37.57 3.18
6023 7473 9.093458 TCTAGATACATCCATACATGTGACAAT 57.907 33.333 9.11 0.00 37.57 2.71
6024 7474 9.716531 CTAGATACATCCATACATGTGACAATT 57.283 33.333 9.11 0.00 37.57 2.32
6030 7480 8.344831 ACATCCATACATGTGACAATTAATTCG 58.655 33.333 9.11 0.00 35.57 3.34
6031 7481 7.258022 TCCATACATGTGACAATTAATTCGG 57.742 36.000 9.11 0.00 0.00 4.30
6032 7482 7.051000 TCCATACATGTGACAATTAATTCGGA 58.949 34.615 9.11 0.00 0.00 4.55
6033 7483 7.554476 TCCATACATGTGACAATTAATTCGGAA 59.446 33.333 9.11 0.00 0.00 4.30
6034 7484 7.643764 CCATACATGTGACAATTAATTCGGAAC 59.356 37.037 9.11 0.00 0.00 3.62
6064 7514 2.135933 AGTAGTCAAGCAAAGTGTCGC 58.864 47.619 0.00 0.00 0.00 5.19
6088 7538 2.215363 CGCAATCACGTTTTGAAACACC 59.785 45.455 11.25 0.00 37.92 4.16
6106 7556 4.965062 ACACCGCGTGAAGTATTATTTTG 58.035 39.130 4.92 0.00 36.96 2.44
6230 7680 4.275936 GGTTATAACTATGCCACTGCCTTG 59.724 45.833 15.05 0.00 36.33 3.61
6417 7867 7.709613 AGATTTATTTTTGCTGATCATCTTGGC 59.290 33.333 0.00 0.00 0.00 4.52
6511 7967 3.313526 GGCGTTTGATCATAATGTGCTCT 59.686 43.478 0.00 0.00 0.00 4.09
6649 8105 5.521735 CCAATCGTATCTCAAAACCTCTCTG 59.478 44.000 0.00 0.00 0.00 3.35
6650 8106 5.923733 ATCGTATCTCAAAACCTCTCTGT 57.076 39.130 0.00 0.00 0.00 3.41
6652 8108 5.470368 TCGTATCTCAAAACCTCTCTGTTG 58.530 41.667 0.00 0.00 0.00 3.33
6657 8113 3.631250 TCAAAACCTCTCTGTTGCCTTT 58.369 40.909 0.00 0.00 0.00 3.11
6660 8116 4.391405 AAACCTCTCTGTTGCCTTTTTG 57.609 40.909 0.00 0.00 0.00 2.44
6662 8118 2.689983 ACCTCTCTGTTGCCTTTTTGTG 59.310 45.455 0.00 0.00 0.00 3.33
6669 8125 5.049167 TCTGTTGCCTTTTTGTGCTATTTG 58.951 37.500 0.00 0.00 0.00 2.32
6670 8126 4.764172 TGTTGCCTTTTTGTGCTATTTGT 58.236 34.783 0.00 0.00 0.00 2.83
6674 8130 3.914364 GCCTTTTTGTGCTATTTGTCTCG 59.086 43.478 0.00 0.00 0.00 4.04
6675 8131 4.320202 GCCTTTTTGTGCTATTTGTCTCGA 60.320 41.667 0.00 0.00 0.00 4.04
6680 8136 9.393249 CTTTTTGTGCTATTTGTCTCGATTTTA 57.607 29.630 0.00 0.00 0.00 1.52
6681 8137 9.906660 TTTTTGTGCTATTTGTCTCGATTTTAT 57.093 25.926 0.00 0.00 0.00 1.40
6682 8138 9.906660 TTTTGTGCTATTTGTCTCGATTTTATT 57.093 25.926 0.00 0.00 0.00 1.40
6722 8178 5.443185 TCCTTTTCTTGATTCAGTTGCTG 57.557 39.130 0.00 0.00 0.00 4.41
6808 8264 5.399858 CGTGACTACACAGTAAAGCATACT 58.600 41.667 0.00 0.00 46.20 2.12
6809 8265 5.512082 CGTGACTACACAGTAAAGCATACTC 59.488 44.000 0.00 0.00 46.20 2.59
6906 9658 7.025365 TGTGTAGACATTTTACTGTAGCGTAG 58.975 38.462 0.00 0.00 0.00 3.51
6953 9706 1.915141 CAAGATGCCTGAGGTGGTTT 58.085 50.000 0.00 0.00 0.00 3.27
6968 9721 3.584834 GTGGTTTCCATTGCATTACACC 58.415 45.455 0.00 0.00 35.28 4.16
7041 9794 2.094026 TGACGATCCATTGACTCACTGG 60.094 50.000 8.80 8.80 35.83 4.00
7097 9850 3.116079 CAGCTTTTCCATTGGCTGTTT 57.884 42.857 0.00 0.00 44.69 2.83
7098 9851 4.255833 CAGCTTTTCCATTGGCTGTTTA 57.744 40.909 0.00 0.00 44.69 2.01
7099 9852 4.824289 CAGCTTTTCCATTGGCTGTTTAT 58.176 39.130 0.00 0.00 44.69 1.40
7100 9853 4.628333 CAGCTTTTCCATTGGCTGTTTATG 59.372 41.667 0.00 0.00 44.69 1.90
7101 9854 4.284234 AGCTTTTCCATTGGCTGTTTATGT 59.716 37.500 0.00 0.00 33.50 2.29
7102 9855 5.480073 AGCTTTTCCATTGGCTGTTTATGTA 59.520 36.000 0.00 0.00 33.50 2.29
7108 9887 6.629128 TCCATTGGCTGTTTATGTAATTGTG 58.371 36.000 0.00 0.00 0.00 3.33
7141 9920 8.811017 CCATACAGTGAGATTATCTAGACCATT 58.189 37.037 0.00 0.00 0.00 3.16
7148 9928 9.039870 GTGAGATTATCTAGACCATTTTGTCTG 57.960 37.037 0.00 0.00 45.03 3.51
7182 9962 5.181748 GCTACAGATCATCAAACCAAGAGT 58.818 41.667 0.00 0.00 0.00 3.24
7249 10032 0.512952 CACTGTTAGCGCAGAACCAC 59.487 55.000 18.94 3.78 39.62 4.16
7320 10103 4.691860 GCTTTCTTTGAGCTCAAGCATA 57.308 40.909 27.02 13.20 45.16 3.14
7327 10110 5.410746 TCTTTGAGCTCAAGCATAAGAGTTG 59.589 40.000 27.02 2.63 45.16 3.16
7387 10170 7.600375 CCTCGTGATGCTTATACAATAATCAGT 59.400 37.037 0.00 0.00 0.00 3.41
7399 10182 4.754618 ACAATAATCAGTTCACAGCAACGA 59.245 37.500 0.00 0.00 0.00 3.85
7401 10184 3.609103 AATCAGTTCACAGCAACGAAC 57.391 42.857 0.00 4.50 41.48 3.95
7411 10194 2.617274 GCAACGAACCCTCCAGTGC 61.617 63.158 0.00 0.00 0.00 4.40
7494 10277 5.391950 GGATCGCCGTTGATGCATAAAATAT 60.392 40.000 0.00 0.00 36.77 1.28
7496 10279 6.164408 TCGCCGTTGATGCATAAAATATAG 57.836 37.500 0.00 0.00 0.00 1.31
7519 10303 5.246203 AGCTGTTGACTTGACCTGATTACTA 59.754 40.000 0.00 0.00 0.00 1.82
7521 10305 6.665992 TGTTGACTTGACCTGATTACTACT 57.334 37.500 0.00 0.00 0.00 2.57
7522 10306 6.688578 TGTTGACTTGACCTGATTACTACTC 58.311 40.000 0.00 0.00 0.00 2.59
7525 10309 5.652891 TGACTTGACCTGATTACTACTCCTC 59.347 44.000 0.00 0.00 0.00 3.71
7566 10350 3.407424 TCACTGACCTGTCCAAATCAG 57.593 47.619 0.00 0.00 43.47 2.90
7581 10365 4.081862 CCAAATCAGCAACATTCCAGTGAT 60.082 41.667 0.00 0.00 0.00 3.06
7582 10366 4.713824 AATCAGCAACATTCCAGTGATG 57.286 40.909 0.00 0.00 0.00 3.07
7583 10367 1.814394 TCAGCAACATTCCAGTGATGC 59.186 47.619 0.00 1.53 45.07 3.91
7586 10370 3.687572 GCAACATTCCAGTGATGCTAG 57.312 47.619 0.00 0.00 42.50 3.42
7652 10436 2.682856 GTCTGTGGTTTGAGCTTGTTGA 59.317 45.455 0.00 0.00 0.00 3.18
7655 10439 2.290367 TGTGGTTTGAGCTTGTTGATCG 59.710 45.455 0.00 0.00 32.98 3.69
7660 10444 1.812235 TGAGCTTGTTGATCGCATGT 58.188 45.000 0.00 0.00 32.98 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.286082 GTGTTTTGTTGTGCAAAGACTAGTG 59.714 40.000 0.00 0.00 46.40 2.74
6 7 3.583806 CTGGTGTTTTGTTGTGCAAAGA 58.416 40.909 0.00 0.00 46.40 2.52
17 18 3.799281 TCTTTCTTGCCTGGTGTTTTG 57.201 42.857 0.00 0.00 0.00 2.44
18 19 4.817318 TTTCTTTCTTGCCTGGTGTTTT 57.183 36.364 0.00 0.00 0.00 2.43
19 20 4.817318 TTTTCTTTCTTGCCTGGTGTTT 57.183 36.364 0.00 0.00 0.00 2.83
28 29 8.703336 GGTCTTGATTGTAATTTTCTTTCTTGC 58.297 33.333 0.00 0.00 0.00 4.01
55 56 0.467290 TCAAGCGCAGGGGTTTCTTT 60.467 50.000 11.47 0.00 33.12 2.52
64 65 0.447801 GTATTGGTGTCAAGCGCAGG 59.552 55.000 11.47 0.00 36.19 4.85
68 69 0.672401 ACGGGTATTGGTGTCAAGCG 60.672 55.000 0.00 0.00 36.19 4.68
92 102 1.064003 TGGTGTCTGCTATGGTGGTT 58.936 50.000 0.00 0.00 0.00 3.67
122 134 4.039730 CGGGTGAGAAGGTGATCTATCATT 59.960 45.833 0.00 0.00 39.30 2.57
123 135 3.576118 CGGGTGAGAAGGTGATCTATCAT 59.424 47.826 0.00 0.00 39.30 2.45
124 136 2.959030 CGGGTGAGAAGGTGATCTATCA 59.041 50.000 0.00 0.00 0.00 2.15
125 137 3.223435 TCGGGTGAGAAGGTGATCTATC 58.777 50.000 0.00 0.00 0.00 2.08
126 138 3.226777 CTCGGGTGAGAAGGTGATCTAT 58.773 50.000 0.00 0.00 45.57 1.98
127 139 2.025226 ACTCGGGTGAGAAGGTGATCTA 60.025 50.000 0.00 0.00 45.57 1.98
128 140 1.272760 ACTCGGGTGAGAAGGTGATCT 60.273 52.381 0.00 0.00 45.57 2.75
148 160 4.751093 TGATGGAGCCGCGCGAAA 62.751 61.111 34.63 11.96 0.00 3.46
220 235 3.198068 CCCGATCTGATTCGTTCAACAT 58.802 45.455 0.00 0.00 37.42 2.71
247 262 3.961838 TTGATGGCGTGTACGGGGC 62.962 63.158 6.55 3.00 40.23 5.80
253 268 1.621317 TCTGGAGTTTGATGGCGTGTA 59.379 47.619 0.00 0.00 0.00 2.90
289 304 0.241213 CTCTTTCGGCGTCTCAGTCA 59.759 55.000 6.85 0.00 0.00 3.41
294 309 1.459975 GGTTTTCTCTTTCGGCGTCTC 59.540 52.381 6.85 0.00 0.00 3.36
335 350 3.448686 GAAGATGGTGGATCGTGTGTAG 58.551 50.000 0.00 0.00 36.04 2.74
337 352 1.066143 GGAAGATGGTGGATCGTGTGT 60.066 52.381 0.00 0.00 36.04 3.72
359 381 1.227556 GGTCTGTATCGGCGGCATT 60.228 57.895 10.53 0.00 0.00 3.56
371 393 4.275810 AGCAGATGCAAATTATGGTCTGT 58.724 39.130 7.68 0.00 45.16 3.41
379 401 4.529897 AGTCCATGAGCAGATGCAAATTA 58.470 39.130 7.68 0.00 45.16 1.40
383 405 2.420547 GGTAGTCCATGAGCAGATGCAA 60.421 50.000 7.68 0.00 45.16 4.08
419 441 1.508632 GGTGTTTGCTCTAGCGTTGA 58.491 50.000 0.00 0.00 45.83 3.18
421 443 0.249741 ACGGTGTTTGCTCTAGCGTT 60.250 50.000 0.00 0.00 44.83 4.84
452 474 1.371558 GACTTGTGTCCTCGGGCTT 59.628 57.895 0.00 0.00 37.24 4.35
525 550 5.782893 TGACCTTTTGTTTAGGAATGGTG 57.217 39.130 0.00 0.00 34.55 4.17
526 551 7.067008 CGATATGACCTTTTGTTTAGGAATGGT 59.933 37.037 0.00 0.00 36.39 3.55
530 555 5.355910 GGCGATATGACCTTTTGTTTAGGAA 59.644 40.000 0.00 0.00 36.58 3.36
534 559 4.569162 CGAGGCGATATGACCTTTTGTTTA 59.431 41.667 0.00 0.00 36.05 2.01
535 560 3.374058 CGAGGCGATATGACCTTTTGTTT 59.626 43.478 0.00 0.00 36.05 2.83
547 572 0.314302 CTTTCCCGACGAGGCGATAT 59.686 55.000 0.00 0.00 39.21 1.63
548 573 1.731433 CCTTTCCCGACGAGGCGATA 61.731 60.000 0.00 0.00 39.21 2.92
579 604 4.023792 TGGCAATAGCGATGCTGAATAAAG 60.024 41.667 10.47 0.00 43.34 1.85
580 605 3.882288 TGGCAATAGCGATGCTGAATAAA 59.118 39.130 10.47 0.00 43.34 1.40
584 609 1.875514 GATGGCAATAGCGATGCTGAA 59.124 47.619 10.47 0.00 43.34 3.02
589 614 0.165295 CAGCGATGGCAATAGCGATG 59.835 55.000 1.50 0.00 39.45 3.84
590 615 0.033920 TCAGCGATGGCAATAGCGAT 59.966 50.000 0.00 0.00 42.24 4.58
591 616 0.179086 TTCAGCGATGGCAATAGCGA 60.179 50.000 0.00 0.00 43.41 4.93
592 617 0.234106 CTTCAGCGATGGCAATAGCG 59.766 55.000 0.00 0.00 43.41 4.26
593 618 0.040603 GCTTCAGCGATGGCAATAGC 60.041 55.000 0.00 0.00 43.41 2.97
594 619 0.590195 GGCTTCAGCGATGGCAATAG 59.410 55.000 0.00 0.00 43.41 1.73
595 620 0.819259 GGGCTTCAGCGATGGCAATA 60.819 55.000 0.00 0.00 43.41 1.90
596 621 2.123428 GGGCTTCAGCGATGGCAAT 61.123 57.895 0.00 0.00 43.41 3.56
597 622 2.751436 GGGCTTCAGCGATGGCAA 60.751 61.111 0.00 0.00 43.41 4.52
598 623 3.982316 CTGGGCTTCAGCGATGGCA 62.982 63.158 0.00 0.00 43.41 4.92
599 624 3.207669 CTGGGCTTCAGCGATGGC 61.208 66.667 0.00 0.00 43.26 4.40
600 625 1.817099 GTCTGGGCTTCAGCGATGG 60.817 63.158 0.00 0.00 43.06 3.51
601 626 2.169789 CGTCTGGGCTTCAGCGATG 61.170 63.158 0.00 0.00 43.06 3.84
602 627 1.680522 ATCGTCTGGGCTTCAGCGAT 61.681 55.000 20.85 20.85 46.69 4.58
603 628 2.351244 ATCGTCTGGGCTTCAGCGA 61.351 57.895 19.26 19.26 46.89 4.93
604 629 2.169789 CATCGTCTGGGCTTCAGCG 61.170 63.158 13.33 13.33 43.06 5.18
605 630 0.391661 TTCATCGTCTGGGCTTCAGC 60.392 55.000 3.31 0.00 43.06 4.26
606 631 1.338105 TGTTCATCGTCTGGGCTTCAG 60.338 52.381 1.98 1.98 44.68 3.02
607 632 0.684535 TGTTCATCGTCTGGGCTTCA 59.315 50.000 0.00 0.00 0.00 3.02
608 633 1.464997 GTTGTTCATCGTCTGGGCTTC 59.535 52.381 0.00 0.00 0.00 3.86
609 634 1.072331 AGTTGTTCATCGTCTGGGCTT 59.928 47.619 0.00 0.00 0.00 4.35
610 635 0.687354 AGTTGTTCATCGTCTGGGCT 59.313 50.000 0.00 0.00 0.00 5.19
611 636 0.798776 CAGTTGTTCATCGTCTGGGC 59.201 55.000 0.00 0.00 0.00 5.36
612 637 2.455674 TCAGTTGTTCATCGTCTGGG 57.544 50.000 0.00 0.00 0.00 4.45
613 638 4.811555 TTTTCAGTTGTTCATCGTCTGG 57.188 40.909 0.00 0.00 0.00 3.86
614 639 4.970003 GGTTTTTCAGTTGTTCATCGTCTG 59.030 41.667 0.00 0.00 0.00 3.51
615 640 4.881850 AGGTTTTTCAGTTGTTCATCGTCT 59.118 37.500 0.00 0.00 0.00 4.18
616 641 5.169836 AGGTTTTTCAGTTGTTCATCGTC 57.830 39.130 0.00 0.00 0.00 4.20
617 642 6.877611 ATAGGTTTTTCAGTTGTTCATCGT 57.122 33.333 0.00 0.00 0.00 3.73
618 643 7.481798 GCTTATAGGTTTTTCAGTTGTTCATCG 59.518 37.037 0.00 0.00 0.00 3.84
619 644 8.515414 AGCTTATAGGTTTTTCAGTTGTTCATC 58.485 33.333 0.00 0.00 0.00 2.92
620 645 8.409358 AGCTTATAGGTTTTTCAGTTGTTCAT 57.591 30.769 0.00 0.00 0.00 2.57
621 646 7.817418 AGCTTATAGGTTTTTCAGTTGTTCA 57.183 32.000 0.00 0.00 0.00 3.18
622 647 9.000486 AGTAGCTTATAGGTTTTTCAGTTGTTC 58.000 33.333 0.00 0.00 0.00 3.18
623 648 8.784043 CAGTAGCTTATAGGTTTTTCAGTTGTT 58.216 33.333 0.00 0.00 0.00 2.83
624 649 8.154856 TCAGTAGCTTATAGGTTTTTCAGTTGT 58.845 33.333 0.00 0.00 0.00 3.32
625 650 8.547967 TCAGTAGCTTATAGGTTTTTCAGTTG 57.452 34.615 0.00 0.00 0.00 3.16
626 651 9.167311 CATCAGTAGCTTATAGGTTTTTCAGTT 57.833 33.333 0.00 0.00 0.00 3.16
627 652 8.540388 TCATCAGTAGCTTATAGGTTTTTCAGT 58.460 33.333 0.00 0.00 0.00 3.41
628 653 8.821894 GTCATCAGTAGCTTATAGGTTTTTCAG 58.178 37.037 0.00 0.00 0.00 3.02
629 654 8.540388 AGTCATCAGTAGCTTATAGGTTTTTCA 58.460 33.333 0.00 0.00 0.00 2.69
630 655 8.950208 AGTCATCAGTAGCTTATAGGTTTTTC 57.050 34.615 0.00 0.00 0.00 2.29
634 659 9.819267 GTTTTAGTCATCAGTAGCTTATAGGTT 57.181 33.333 0.00 0.00 0.00 3.50
635 660 8.136165 CGTTTTAGTCATCAGTAGCTTATAGGT 58.864 37.037 0.00 0.00 0.00 3.08
636 661 8.350722 TCGTTTTAGTCATCAGTAGCTTATAGG 58.649 37.037 0.00 0.00 0.00 2.57
637 662 9.900710 ATCGTTTTAGTCATCAGTAGCTTATAG 57.099 33.333 0.00 0.00 0.00 1.31
641 666 8.870879 GTTAATCGTTTTAGTCATCAGTAGCTT 58.129 33.333 0.00 0.00 0.00 3.74
642 667 8.033038 TGTTAATCGTTTTAGTCATCAGTAGCT 58.967 33.333 0.00 0.00 0.00 3.32
643 668 8.108782 GTGTTAATCGTTTTAGTCATCAGTAGC 58.891 37.037 0.00 0.00 0.00 3.58
644 669 8.311822 CGTGTTAATCGTTTTAGTCATCAGTAG 58.688 37.037 0.00 0.00 0.00 2.57
645 670 7.201376 GCGTGTTAATCGTTTTAGTCATCAGTA 60.201 37.037 5.27 0.00 0.00 2.74
646 671 6.400727 GCGTGTTAATCGTTTTAGTCATCAGT 60.401 38.462 5.27 0.00 0.00 3.41
647 672 5.952064 GCGTGTTAATCGTTTTAGTCATCAG 59.048 40.000 5.27 0.00 0.00 2.90
648 673 5.405873 TGCGTGTTAATCGTTTTAGTCATCA 59.594 36.000 5.27 0.00 0.00 3.07
649 674 5.849858 TGCGTGTTAATCGTTTTAGTCATC 58.150 37.500 5.27 0.00 0.00 2.92
650 675 5.849357 TGCGTGTTAATCGTTTTAGTCAT 57.151 34.783 5.27 0.00 0.00 3.06
651 676 5.390040 CCATGCGTGTTAATCGTTTTAGTCA 60.390 40.000 4.96 0.00 0.00 3.41
652 677 5.019498 CCATGCGTGTTAATCGTTTTAGTC 58.981 41.667 4.96 0.00 0.00 2.59
653 678 4.142773 CCCATGCGTGTTAATCGTTTTAGT 60.143 41.667 4.96 0.00 0.00 2.24
654 679 4.093703 TCCCATGCGTGTTAATCGTTTTAG 59.906 41.667 4.96 0.00 0.00 1.85
655 680 4.001652 TCCCATGCGTGTTAATCGTTTTA 58.998 39.130 4.96 0.00 0.00 1.52
656 681 2.814919 TCCCATGCGTGTTAATCGTTTT 59.185 40.909 4.96 0.00 0.00 2.43
657 682 2.428491 TCCCATGCGTGTTAATCGTTT 58.572 42.857 4.96 0.00 0.00 3.60
658 683 2.102070 TCCCATGCGTGTTAATCGTT 57.898 45.000 4.96 0.00 0.00 3.85
659 684 2.325583 ATCCCATGCGTGTTAATCGT 57.674 45.000 4.96 0.00 0.00 3.73
660 685 2.286950 CCAATCCCATGCGTGTTAATCG 60.287 50.000 4.96 0.00 0.00 3.34
661 686 2.034558 CCCAATCCCATGCGTGTTAATC 59.965 50.000 4.96 0.00 0.00 1.75
662 687 2.031120 CCCAATCCCATGCGTGTTAAT 58.969 47.619 4.96 0.00 0.00 1.40
663 688 1.272203 ACCCAATCCCATGCGTGTTAA 60.272 47.619 4.96 0.00 0.00 2.01
664 689 0.329931 ACCCAATCCCATGCGTGTTA 59.670 50.000 4.96 0.00 0.00 2.41
665 690 1.076549 ACCCAATCCCATGCGTGTT 59.923 52.632 4.96 0.00 0.00 3.32
666 691 1.678635 CACCCAATCCCATGCGTGT 60.679 57.895 4.96 0.00 0.00 4.49
667 692 1.378382 TCACCCAATCCCATGCGTG 60.378 57.895 0.00 0.00 31.80 5.34
668 693 1.378514 GTCACCCAATCCCATGCGT 60.379 57.895 0.00 0.00 0.00 5.24
669 694 2.120909 GGTCACCCAATCCCATGCG 61.121 63.158 0.00 0.00 0.00 4.73
670 695 1.758122 GGGTCACCCAATCCCATGC 60.758 63.158 8.52 0.00 44.65 4.06
671 696 4.684623 GGGTCACCCAATCCCATG 57.315 61.111 8.52 0.00 44.65 3.66
682 707 0.832135 TCAGTGGTGAGAGGGGTCAC 60.832 60.000 0.00 0.00 45.30 3.67
683 708 0.832135 GTCAGTGGTGAGAGGGGTCA 60.832 60.000 0.00 0.00 31.53 4.02
684 709 0.832135 TGTCAGTGGTGAGAGGGGTC 60.832 60.000 0.00 0.00 31.53 4.46
685 710 0.399949 TTGTCAGTGGTGAGAGGGGT 60.400 55.000 0.00 0.00 31.53 4.95
686 711 0.035458 GTTGTCAGTGGTGAGAGGGG 59.965 60.000 0.00 0.00 31.53 4.79
687 712 0.035458 GGTTGTCAGTGGTGAGAGGG 59.965 60.000 0.00 0.00 31.53 4.30
688 713 0.319900 CGGTTGTCAGTGGTGAGAGG 60.320 60.000 0.00 0.00 31.53 3.69
689 714 0.673985 TCGGTTGTCAGTGGTGAGAG 59.326 55.000 0.00 0.00 31.53 3.20
690 715 1.000843 CATCGGTTGTCAGTGGTGAGA 59.999 52.381 0.00 0.00 31.53 3.27
691 716 1.270305 ACATCGGTTGTCAGTGGTGAG 60.270 52.381 0.00 0.00 30.89 3.51
692 717 0.756294 ACATCGGTTGTCAGTGGTGA 59.244 50.000 0.00 0.00 30.89 4.02
693 718 3.305709 ACATCGGTTGTCAGTGGTG 57.694 52.632 0.00 0.00 30.89 4.17
701 726 1.001520 TCCATCAACGACATCGGTTGT 59.998 47.619 6.21 0.00 43.65 3.32
702 727 1.660607 CTCCATCAACGACATCGGTTG 59.339 52.381 6.21 7.97 44.95 3.77
703 728 1.405526 CCTCCATCAACGACATCGGTT 60.406 52.381 6.21 0.00 44.95 4.44
704 729 0.175760 CCTCCATCAACGACATCGGT 59.824 55.000 6.21 0.00 44.95 4.69
705 730 0.530650 CCCTCCATCAACGACATCGG 60.531 60.000 6.21 0.00 44.95 4.18
706 731 0.530650 CCCCTCCATCAACGACATCG 60.531 60.000 0.00 0.00 46.33 3.84
707 732 0.830648 TCCCCTCCATCAACGACATC 59.169 55.000 0.00 0.00 0.00 3.06
708 733 0.833287 CTCCCCTCCATCAACGACAT 59.167 55.000 0.00 0.00 0.00 3.06
709 734 1.899437 GCTCCCCTCCATCAACGACA 61.899 60.000 0.00 0.00 0.00 4.35
710 735 1.153349 GCTCCCCTCCATCAACGAC 60.153 63.158 0.00 0.00 0.00 4.34
711 736 2.367202 GGCTCCCCTCCATCAACGA 61.367 63.158 0.00 0.00 0.00 3.85
712 737 2.190578 GGCTCCCCTCCATCAACG 59.809 66.667 0.00 0.00 0.00 4.10
713 738 2.190578 CGGCTCCCCTCCATCAAC 59.809 66.667 0.00 0.00 0.00 3.18
714 739 2.889521 TAGCGGCTCCCCTCCATCAA 62.890 60.000 5.39 0.00 0.00 2.57
715 740 3.389139 TAGCGGCTCCCCTCCATCA 62.389 63.158 5.39 0.00 0.00 3.07
716 741 2.524394 TAGCGGCTCCCCTCCATC 60.524 66.667 5.39 0.00 0.00 3.51
717 742 2.525381 CTAGCGGCTCCCCTCCAT 60.525 66.667 5.39 0.00 0.00 3.41
718 743 3.740495 CTCTAGCGGCTCCCCTCCA 62.740 68.421 5.39 0.00 0.00 3.86
719 744 2.915137 CTCTAGCGGCTCCCCTCC 60.915 72.222 5.39 0.00 0.00 4.30
720 745 2.915137 CCTCTAGCGGCTCCCCTC 60.915 72.222 5.39 0.00 0.00 4.30
721 746 3.430497 TCCTCTAGCGGCTCCCCT 61.430 66.667 5.39 0.00 0.00 4.79
722 747 3.228017 GTCCTCTAGCGGCTCCCC 61.228 72.222 5.39 0.00 0.00 4.81
723 748 3.597728 CGTCCTCTAGCGGCTCCC 61.598 72.222 5.39 0.00 0.00 4.30
724 749 3.597728 CCGTCCTCTAGCGGCTCC 61.598 72.222 5.39 0.00 41.53 4.70
742 767 2.027625 AAAGAGTTTCGCTCCGCCG 61.028 57.895 0.00 0.00 45.21 6.46
743 768 1.497722 CAAAGAGTTTCGCTCCGCC 59.502 57.895 0.00 0.00 45.21 6.13
744 769 0.949105 TCCAAAGAGTTTCGCTCCGC 60.949 55.000 0.00 0.00 45.21 5.54
745 770 1.071605 CTCCAAAGAGTTTCGCTCCG 58.928 55.000 0.00 0.00 45.21 4.63
746 771 1.270893 ACCTCCAAAGAGTTTCGCTCC 60.271 52.381 0.00 0.00 45.21 4.70
747 772 1.801178 CACCTCCAAAGAGTTTCGCTC 59.199 52.381 0.00 0.00 44.45 5.03
748 773 1.543429 CCACCTCCAAAGAGTTTCGCT 60.543 52.381 0.00 0.00 38.58 4.93
749 774 0.875059 CCACCTCCAAAGAGTTTCGC 59.125 55.000 0.00 0.00 38.58 4.70
750 775 0.875059 GCCACCTCCAAAGAGTTTCG 59.125 55.000 0.00 0.00 38.58 3.46
751 776 1.248486 GGCCACCTCCAAAGAGTTTC 58.752 55.000 0.00 0.00 38.58 2.78
752 777 0.537371 CGGCCACCTCCAAAGAGTTT 60.537 55.000 2.24 0.00 38.58 2.66
753 778 1.073199 CGGCCACCTCCAAAGAGTT 59.927 57.895 2.24 0.00 38.58 3.01
754 779 2.750350 CGGCCACCTCCAAAGAGT 59.250 61.111 2.24 0.00 38.58 3.24
755 780 2.747855 GCGGCCACCTCCAAAGAG 60.748 66.667 2.24 0.00 40.09 2.85
756 781 4.697756 CGCGGCCACCTCCAAAGA 62.698 66.667 2.24 0.00 0.00 2.52
757 782 4.697756 TCGCGGCCACCTCCAAAG 62.698 66.667 6.13 0.00 0.00 2.77
758 783 4.697756 CTCGCGGCCACCTCCAAA 62.698 66.667 6.13 0.00 0.00 3.28
762 787 3.138798 TAGACTCGCGGCCACCTC 61.139 66.667 6.13 0.00 0.00 3.85
763 788 3.450115 GTAGACTCGCGGCCACCT 61.450 66.667 6.13 0.00 0.00 4.00
764 789 2.502692 AAAGTAGACTCGCGGCCACC 62.503 60.000 6.13 0.00 0.00 4.61
765 790 0.669625 AAAAGTAGACTCGCGGCCAC 60.670 55.000 6.13 0.00 0.00 5.01
766 791 0.034337 AAAAAGTAGACTCGCGGCCA 59.966 50.000 6.13 0.00 0.00 5.36
767 792 2.836944 AAAAAGTAGACTCGCGGCC 58.163 52.632 6.13 0.00 0.00 6.13
784 809 6.687081 TTCTTACTTTCAGCGGAAGAAAAA 57.313 33.333 0.00 0.00 34.17 1.94
785 810 6.877611 ATTCTTACTTTCAGCGGAAGAAAA 57.122 33.333 0.00 0.00 39.03 2.29
786 811 6.932400 TGTATTCTTACTTTCAGCGGAAGAAA 59.068 34.615 0.00 0.00 39.03 2.52
787 812 6.460781 TGTATTCTTACTTTCAGCGGAAGAA 58.539 36.000 0.00 0.00 39.67 2.52
788 813 6.032956 TGTATTCTTACTTTCAGCGGAAGA 57.967 37.500 0.00 0.00 33.82 2.87
789 814 6.910536 ATGTATTCTTACTTTCAGCGGAAG 57.089 37.500 0.00 0.00 33.82 3.46
790 815 7.681939 AAATGTATTCTTACTTTCAGCGGAA 57.318 32.000 0.00 0.00 0.00 4.30
791 816 7.681939 AAAATGTATTCTTACTTTCAGCGGA 57.318 32.000 0.00 0.00 0.00 5.54
792 817 9.490663 CTAAAAATGTATTCTTACTTTCAGCGG 57.509 33.333 0.00 0.00 0.00 5.52
842 867 4.900635 ACGTGTTTCTCAAAGAGCAAAT 57.099 36.364 0.00 0.00 0.00 2.32
850 875 7.092079 TCCTTATCGAATACGTGTTTCTCAAA 58.908 34.615 0.00 0.00 40.69 2.69
852 877 6.198650 TCCTTATCGAATACGTGTTTCTCA 57.801 37.500 0.00 0.00 40.69 3.27
853 878 7.515957 TTTCCTTATCGAATACGTGTTTCTC 57.484 36.000 0.00 0.00 40.69 2.87
870 900 6.096846 GGGAGGTTAGTGTACGTATTTCCTTA 59.903 42.308 0.00 0.00 0.00 2.69
874 904 5.105063 GTGGGAGGTTAGTGTACGTATTTC 58.895 45.833 0.00 0.00 0.00 2.17
878 908 2.041620 AGGTGGGAGGTTAGTGTACGTA 59.958 50.000 0.00 0.00 0.00 3.57
888 918 2.356432 GGCGTATTTTAGGTGGGAGGTT 60.356 50.000 0.00 0.00 0.00 3.50
889 919 1.211212 GGCGTATTTTAGGTGGGAGGT 59.789 52.381 0.00 0.00 0.00 3.85
890 920 1.808891 CGGCGTATTTTAGGTGGGAGG 60.809 57.143 0.00 0.00 0.00 4.30
917 947 1.409427 GTTCGAGGTGGAGGATACAGG 59.591 57.143 0.00 0.00 41.41 4.00
1247 1310 0.535780 TTGCAGCAGGGTCAGAAGTG 60.536 55.000 0.00 0.00 0.00 3.16
1461 1694 3.559171 CCCATATACTTCATCCAACCGGG 60.559 52.174 6.32 0.00 38.37 5.73
1571 1805 4.381932 CCAATGCAAGTAGGGAAAATGGAC 60.382 45.833 0.00 0.00 0.00 4.02
1631 1866 4.560716 GCCAAACAACCCTTAAAAGCTAGG 60.561 45.833 0.00 0.00 0.00 3.02
1717 1966 1.811266 CCTGGTGTGAGCGATTCCG 60.811 63.158 0.00 0.00 39.16 4.30
1790 2039 1.002087 GACCAAGAACTCATCACCGGT 59.998 52.381 0.00 0.00 0.00 5.28
1819 2068 6.986817 AGACCTCATAGTTTGTGATAATTCCG 59.013 38.462 0.00 0.00 0.00 4.30
1968 2305 2.165998 GAGATTTTGCCACAAGGAGCT 58.834 47.619 0.00 0.00 36.89 4.09
2015 2352 4.337555 CACATGCAAAGGAAGATAAGGAGG 59.662 45.833 0.00 0.00 0.00 4.30
2201 2586 2.220824 CACGTGTTACCATATGATGCCG 59.779 50.000 7.58 1.49 0.00 5.69
2231 2670 7.724061 AGGTACACCAAATGTCAAGTTAGAATT 59.276 33.333 0.38 0.00 42.09 2.17
2341 2782 4.123497 AGCCTGGTCAAAAACAAACTTC 57.877 40.909 0.00 0.00 0.00 3.01
2419 2861 4.518970 AGAACAAGCGGTTTATGTTGTCAT 59.481 37.500 7.82 0.00 40.63 3.06
2426 2868 6.093495 TCCAGATAAAGAACAAGCGGTTTATG 59.907 38.462 0.00 0.00 40.63 1.90
2455 2897 9.147732 ACTTCTCCAAAGAAACTATGGAAAATT 57.852 29.630 0.00 0.00 42.41 1.82
2456 2898 8.712228 ACTTCTCCAAAGAAACTATGGAAAAT 57.288 30.769 0.00 0.00 42.41 1.82
2486 2942 1.741770 GTTCCTAGGTGGCAGCACG 60.742 63.158 20.04 8.77 35.26 5.34
2864 3636 0.590682 CACATAGGCACGCAACAACA 59.409 50.000 0.00 0.00 0.00 3.33
2865 3637 0.591170 ACACATAGGCACGCAACAAC 59.409 50.000 0.00 0.00 0.00 3.32
2962 3775 2.021243 CACACACACACACACGCG 59.979 61.111 3.53 3.53 0.00 6.01
2964 3777 1.225991 GTGCACACACACACACACG 60.226 57.895 13.17 0.00 46.61 4.49
3258 4099 7.581213 TCAGGGTAATGTATTGCCAAAATAG 57.419 36.000 12.71 0.00 43.34 1.73
3259 4100 7.415765 CGTTCAGGGTAATGTATTGCCAAAATA 60.416 37.037 12.71 0.00 43.34 1.40
3260 4101 6.627065 CGTTCAGGGTAATGTATTGCCAAAAT 60.627 38.462 12.71 0.00 43.34 1.82
3261 4102 5.336055 CGTTCAGGGTAATGTATTGCCAAAA 60.336 40.000 12.71 2.55 43.34 2.44
3262 4103 4.156922 CGTTCAGGGTAATGTATTGCCAAA 59.843 41.667 12.71 2.84 43.34 3.28
3714 4563 2.474359 GAGCACAGCATATACTCTTGCG 59.526 50.000 0.00 0.00 43.61 4.85
4114 5304 6.735130 ACTGCAAAATAACCAGTAACAGAAC 58.265 36.000 0.00 0.00 38.00 3.01
4291 5499 0.034960 GAAGAAGAACTCCCTGGGGC 60.035 60.000 14.00 0.19 34.68 5.80
4465 5692 2.766263 TCCAGAACCACGCTGATTAGAT 59.234 45.455 0.00 0.00 35.39 1.98
4493 5720 9.053840 GTAAATAAACTAAGGCCCAGATAAGAC 57.946 37.037 8.92 0.00 0.00 3.01
4585 5812 3.726291 AAAAAGCGTGGCAAATGTAGT 57.274 38.095 0.00 0.00 0.00 2.73
4609 5836 1.202065 GCGTGATAGTTGGCATGTGTG 60.202 52.381 0.00 0.00 0.00 3.82
4779 6006 0.256177 GGCTAGCCTAGGGTGCTTTT 59.744 55.000 27.17 0.00 40.23 2.27
5342 6756 6.783708 AACAATTGGACAAACTGGTTAGAA 57.216 33.333 10.83 0.00 0.00 2.10
5348 6762 4.753233 TGACAAACAATTGGACAAACTGG 58.247 39.130 10.83 0.00 41.01 4.00
5378 6792 9.139734 AGGCACTGATGATATATCAAAACAATT 57.860 29.630 19.03 0.99 37.63 2.32
5379 6793 8.701908 AGGCACTGATGATATATCAAAACAAT 57.298 30.769 19.03 7.58 37.63 2.71
5396 6814 7.419711 ACTAGCTAAATACTTAAGGCACTGA 57.580 36.000 7.53 0.00 40.86 3.41
5426 6844 6.597562 TGTGGTACAAAGGTTTAAGATCACT 58.402 36.000 0.00 0.00 44.16 3.41
5427 6845 6.870971 TGTGGTACAAAGGTTTAAGATCAC 57.129 37.500 0.00 0.00 44.16 3.06
5899 7347 4.069304 TCCAATTTGTCGTACTTGGAAGG 58.931 43.478 9.01 0.00 43.06 3.46
5940 7390 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
5941 7391 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
5942 7392 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
5943 7393 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
5944 7394 3.846360 AGACGAGTAATTTGGAACGGAG 58.154 45.455 0.00 0.00 0.00 4.63
5945 7395 3.947910 AGACGAGTAATTTGGAACGGA 57.052 42.857 0.00 0.00 0.00 4.69
5946 7396 5.404946 TCTAAGACGAGTAATTTGGAACGG 58.595 41.667 0.00 0.00 0.00 4.44
5947 7397 6.939551 TTCTAAGACGAGTAATTTGGAACG 57.060 37.500 0.00 0.00 0.00 3.95
5948 7398 8.175716 CCATTTCTAAGACGAGTAATTTGGAAC 58.824 37.037 0.00 0.00 0.00 3.62
5949 7399 8.098286 TCCATTTCTAAGACGAGTAATTTGGAA 58.902 33.333 0.00 0.00 0.00 3.53
5950 7400 7.617225 TCCATTTCTAAGACGAGTAATTTGGA 58.383 34.615 0.00 0.00 0.00 3.53
5951 7401 7.843490 TCCATTTCTAAGACGAGTAATTTGG 57.157 36.000 0.00 0.00 0.00 3.28
5952 7402 8.883731 ACATCCATTTCTAAGACGAGTAATTTG 58.116 33.333 0.00 0.00 0.00 2.32
5955 7405 9.915629 GATACATCCATTTCTAAGACGAGTAAT 57.084 33.333 0.00 0.00 0.00 1.89
5956 7406 9.132923 AGATACATCCATTTCTAAGACGAGTAA 57.867 33.333 0.00 0.00 0.00 2.24
5957 7407 8.693120 AGATACATCCATTTCTAAGACGAGTA 57.307 34.615 0.00 0.00 0.00 2.59
5958 7408 7.589958 AGATACATCCATTTCTAAGACGAGT 57.410 36.000 0.00 0.00 0.00 4.18
5959 7409 8.568794 TGTAGATACATCCATTTCTAAGACGAG 58.431 37.037 0.00 0.00 0.00 4.18
5960 7410 8.459911 TGTAGATACATCCATTTCTAAGACGA 57.540 34.615 0.00 0.00 0.00 4.20
5961 7411 9.698309 ATTGTAGATACATCCATTTCTAAGACG 57.302 33.333 0.00 0.00 35.89 4.18
5993 7443 9.753674 TCACATGTATGGATGTATCTAGATGTA 57.246 33.333 15.79 4.44 34.69 2.29
5994 7444 8.526978 GTCACATGTATGGATGTATCTAGATGT 58.473 37.037 15.79 1.25 34.69 3.06
5995 7445 8.526147 TGTCACATGTATGGATGTATCTAGATG 58.474 37.037 15.79 0.00 34.69 2.90
5996 7446 8.655935 TGTCACATGTATGGATGTATCTAGAT 57.344 34.615 10.73 10.73 34.69 1.98
5997 7447 8.477419 TTGTCACATGTATGGATGTATCTAGA 57.523 34.615 0.00 0.00 34.69 2.43
5998 7448 9.716531 AATTGTCACATGTATGGATGTATCTAG 57.283 33.333 0.00 0.00 34.69 2.43
6004 7454 8.344831 CGAATTAATTGTCACATGTATGGATGT 58.655 33.333 5.17 0.00 37.01 3.06
6005 7455 7.804600 CCGAATTAATTGTCACATGTATGGATG 59.195 37.037 5.17 0.00 0.00 3.51
6006 7456 7.719193 TCCGAATTAATTGTCACATGTATGGAT 59.281 33.333 5.17 0.00 0.00 3.41
6007 7457 7.051000 TCCGAATTAATTGTCACATGTATGGA 58.949 34.615 5.17 0.00 0.00 3.41
6008 7458 7.258022 TCCGAATTAATTGTCACATGTATGG 57.742 36.000 5.17 0.00 0.00 2.74
6009 7459 7.373180 CGTTCCGAATTAATTGTCACATGTATG 59.627 37.037 5.17 0.00 0.00 2.39
6010 7460 7.406553 CGTTCCGAATTAATTGTCACATGTAT 58.593 34.615 5.17 0.00 0.00 2.29
6011 7461 6.183360 CCGTTCCGAATTAATTGTCACATGTA 60.183 38.462 5.17 0.00 0.00 2.29
6012 7462 5.391523 CCGTTCCGAATTAATTGTCACATGT 60.392 40.000 5.17 0.00 0.00 3.21
6013 7463 5.027737 CCGTTCCGAATTAATTGTCACATG 58.972 41.667 5.17 0.00 0.00 3.21
6014 7464 4.938832 TCCGTTCCGAATTAATTGTCACAT 59.061 37.500 5.17 0.00 0.00 3.21
6015 7465 4.316645 TCCGTTCCGAATTAATTGTCACA 58.683 39.130 5.17 0.00 0.00 3.58
6016 7466 4.201783 CCTCCGTTCCGAATTAATTGTCAC 60.202 45.833 5.17 0.00 0.00 3.67
6017 7467 3.936453 CCTCCGTTCCGAATTAATTGTCA 59.064 43.478 5.17 0.00 0.00 3.58
6018 7468 3.311596 CCCTCCGTTCCGAATTAATTGTC 59.688 47.826 5.17 0.00 0.00 3.18
6019 7469 3.054948 TCCCTCCGTTCCGAATTAATTGT 60.055 43.478 5.17 0.00 0.00 2.71
6020 7470 3.537580 TCCCTCCGTTCCGAATTAATTG 58.462 45.455 5.17 0.00 0.00 2.32
6021 7471 3.199289 ACTCCCTCCGTTCCGAATTAATT 59.801 43.478 0.00 0.00 0.00 1.40
6022 7472 2.770232 ACTCCCTCCGTTCCGAATTAAT 59.230 45.455 0.00 0.00 0.00 1.40
6023 7473 2.181975 ACTCCCTCCGTTCCGAATTAA 58.818 47.619 0.00 0.00 0.00 1.40
6024 7474 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
6025 7475 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
6026 7476 1.341778 ACTACTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
6027 7477 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
6028 7478 0.911769 TACTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
6029 7479 1.307097 CTACTACTCCCTCCGTTCCG 58.693 60.000 0.00 0.00 0.00 4.30
6030 7480 2.296792 GACTACTACTCCCTCCGTTCC 58.703 57.143 0.00 0.00 0.00 3.62
6031 7481 2.996631 TGACTACTACTCCCTCCGTTC 58.003 52.381 0.00 0.00 0.00 3.95
6032 7482 3.354467 CTTGACTACTACTCCCTCCGTT 58.646 50.000 0.00 0.00 0.00 4.44
6033 7483 2.944991 GCTTGACTACTACTCCCTCCGT 60.945 54.545 0.00 0.00 0.00 4.69
6034 7484 1.677052 GCTTGACTACTACTCCCTCCG 59.323 57.143 0.00 0.00 0.00 4.63
6035 7485 2.736347 TGCTTGACTACTACTCCCTCC 58.264 52.381 0.00 0.00 0.00 4.30
6036 7486 4.221041 ACTTTGCTTGACTACTACTCCCTC 59.779 45.833 0.00 0.00 0.00 4.30
6037 7487 4.021016 CACTTTGCTTGACTACTACTCCCT 60.021 45.833 0.00 0.00 0.00 4.20
6038 7488 4.246458 CACTTTGCTTGACTACTACTCCC 58.754 47.826 0.00 0.00 0.00 4.30
6039 7489 4.884247 ACACTTTGCTTGACTACTACTCC 58.116 43.478 0.00 0.00 0.00 3.85
6040 7490 4.617645 CGACACTTTGCTTGACTACTACTC 59.382 45.833 0.00 0.00 0.00 2.59
6041 7491 4.547532 CGACACTTTGCTTGACTACTACT 58.452 43.478 0.00 0.00 0.00 2.57
6042 7492 3.121445 GCGACACTTTGCTTGACTACTAC 59.879 47.826 0.00 0.00 0.00 2.73
6043 7493 3.005472 AGCGACACTTTGCTTGACTACTA 59.995 43.478 0.00 0.00 39.78 1.82
6044 7494 2.135933 GCGACACTTTGCTTGACTACT 58.864 47.619 0.00 0.00 0.00 2.57
6064 7514 3.788694 TGTTTCAAAACGTGATTGCGAAG 59.211 39.130 8.97 0.00 41.74 3.79
6088 7538 3.918635 TCGCAAAATAATACTTCACGCG 58.081 40.909 3.53 3.53 41.40 6.01
6106 7556 2.825387 TGACATGGCCTGCATCGC 60.825 61.111 3.32 0.00 0.00 4.58
6230 7680 3.339141 CTTAACTTTGAGAGCACCCTCC 58.661 50.000 0.00 0.00 38.96 4.30
6417 7867 4.066490 GGAGGATGAGAAGCAGATCATTG 58.934 47.826 0.00 0.00 36.30 2.82
6426 7876 1.209019 TGCAAGAGGAGGATGAGAAGC 59.791 52.381 0.00 0.00 0.00 3.86
6494 7950 5.128205 CCCTTCAGAGCACATTATGATCAA 58.872 41.667 0.00 0.00 46.75 2.57
6511 7967 2.367202 GGCGGAGATGTCCCCTTCA 61.367 63.158 2.75 0.00 40.20 3.02
6649 8105 5.049828 AGACAAATAGCACAAAAAGGCAAC 58.950 37.500 0.00 0.00 0.00 4.17
6650 8106 5.275067 AGACAAATAGCACAAAAAGGCAA 57.725 34.783 0.00 0.00 0.00 4.52
6652 8108 3.914364 CGAGACAAATAGCACAAAAAGGC 59.086 43.478 0.00 0.00 0.00 4.35
6657 8113 9.554724 GAATAAAATCGAGACAAATAGCACAAA 57.445 29.630 0.00 0.00 0.00 2.83
6660 8116 7.640240 GGTGAATAAAATCGAGACAAATAGCAC 59.360 37.037 0.00 0.00 0.00 4.40
6662 8118 6.846283 CGGTGAATAAAATCGAGACAAATAGC 59.154 38.462 0.00 0.00 0.00 2.97
6669 8125 4.100529 TCGTCGGTGAATAAAATCGAGAC 58.899 43.478 0.00 0.00 0.00 3.36
6670 8126 4.348656 CTCGTCGGTGAATAAAATCGAGA 58.651 43.478 0.00 0.00 43.69 4.04
6674 8130 4.328983 TGAAGCTCGTCGGTGAATAAAATC 59.671 41.667 0.00 0.00 0.00 2.17
6675 8131 4.250464 TGAAGCTCGTCGGTGAATAAAAT 58.750 39.130 0.00 0.00 0.00 1.82
6680 8136 2.386661 AATGAAGCTCGTCGGTGAAT 57.613 45.000 0.00 0.00 0.00 2.57
6681 8137 2.066262 GAAATGAAGCTCGTCGGTGAA 58.934 47.619 0.00 0.00 0.00 3.18
6682 8138 1.671850 GGAAATGAAGCTCGTCGGTGA 60.672 52.381 0.00 0.00 0.00 4.02
6722 8178 3.532542 GAGAACAGTAAGGTGGTATGCC 58.467 50.000 0.00 0.00 0.00 4.40
6821 8287 5.006844 TCGTTTACTTTGTATGTGTGTGTGG 59.993 40.000 0.00 0.00 0.00 4.17
6953 9706 2.192664 ACACGGTGTAATGCAATGGA 57.807 45.000 12.96 0.00 0.00 3.41
7041 9794 1.045911 TGGGACACCTTGCAAAACCC 61.046 55.000 0.00 9.49 37.76 4.11
7095 9848 9.945904 TGTATGGACACTACACAATTACATAAA 57.054 29.630 0.00 0.00 0.00 1.40
7097 9850 8.755028 ACTGTATGGACACTACACAATTACATA 58.245 33.333 0.00 0.00 0.00 2.29
7098 9851 7.549134 CACTGTATGGACACTACACAATTACAT 59.451 37.037 0.00 0.00 0.00 2.29
7099 9852 6.871492 CACTGTATGGACACTACACAATTACA 59.129 38.462 0.00 0.00 0.00 2.41
7100 9853 7.094631 TCACTGTATGGACACTACACAATTAC 58.905 38.462 0.00 0.00 0.00 1.89
7101 9854 7.177744 TCTCACTGTATGGACACTACACAATTA 59.822 37.037 0.00 0.00 0.00 1.40
7102 9855 6.014584 TCTCACTGTATGGACACTACACAATT 60.015 38.462 0.00 0.00 0.00 2.32
7108 9887 8.172352 AGATAATCTCACTGTATGGACACTAC 57.828 38.462 0.00 0.00 0.00 2.73
7141 9920 0.319900 GCGCTGACTCTCCAGACAAA 60.320 55.000 0.00 0.00 36.29 2.83
7148 9928 1.001815 GATCTGTAGCGCTGACTCTCC 60.002 57.143 22.90 0.00 0.00 3.71
7182 9962 9.995003 ATATTGGCAAAAGTTAATTTCAGTCAA 57.005 25.926 3.01 5.35 35.92 3.18
7237 10020 3.865929 CTGTCCGTGGTTCTGCGCT 62.866 63.158 9.73 0.00 0.00 5.92
7238 10021 3.414700 CTGTCCGTGGTTCTGCGC 61.415 66.667 0.00 0.00 0.00 6.09
7249 10032 0.105964 TTGTCCAGTTGTCCTGTCCG 59.894 55.000 0.00 0.00 39.74 4.79
7320 10103 3.817647 GGTTGAATCTGACTGCAACTCTT 59.182 43.478 14.58 0.00 40.21 2.85
7327 10110 2.350772 CGGTTTGGTTGAATCTGACTGC 60.351 50.000 0.00 0.00 0.00 4.40
7387 10170 0.534203 GGAGGGTTCGTTGCTGTGAA 60.534 55.000 0.00 0.00 0.00 3.18
7399 10182 0.687354 CTAGTGTGCACTGGAGGGTT 59.313 55.000 19.41 0.00 41.75 4.11
7401 10184 0.687354 AACTAGTGTGCACTGGAGGG 59.313 55.000 19.41 6.04 41.75 4.30
7411 10194 6.887376 AGCATCGTGTAATAAACTAGTGTG 57.113 37.500 0.00 0.00 0.00 3.82
7494 10277 4.623932 AATCAGGTCAAGTCAACAGCTA 57.376 40.909 0.00 0.00 0.00 3.32
7496 10279 4.319177 AGTAATCAGGTCAAGTCAACAGC 58.681 43.478 0.00 0.00 0.00 4.40
7519 10303 5.519808 TCACTGTTCATATGTAGGAGGAGT 58.480 41.667 1.90 0.00 0.00 3.85
7521 10305 6.377080 AGATCACTGTTCATATGTAGGAGGA 58.623 40.000 1.90 0.00 0.00 3.71
7522 10306 6.662865 AGATCACTGTTCATATGTAGGAGG 57.337 41.667 1.90 0.00 0.00 4.30
7525 10309 7.706281 GTGAAGATCACTGTTCATATGTAGG 57.294 40.000 1.90 0.00 43.73 3.18
7566 10350 3.012518 ACTAGCATCACTGGAATGTTGC 58.987 45.455 0.00 1.45 42.94 4.17
7581 10365 2.218603 TCATCGATCGTAGCACTAGCA 58.781 47.619 15.94 0.00 45.49 3.49
7582 10366 2.480802 TCTCATCGATCGTAGCACTAGC 59.519 50.000 15.94 0.00 42.56 3.42
7583 10367 3.120477 GGTCTCATCGATCGTAGCACTAG 60.120 52.174 15.94 4.77 0.00 2.57
7584 10368 2.806818 GGTCTCATCGATCGTAGCACTA 59.193 50.000 15.94 0.00 0.00 2.74
7585 10369 1.604755 GGTCTCATCGATCGTAGCACT 59.395 52.381 15.94 0.00 0.00 4.40
7586 10370 1.335142 GGGTCTCATCGATCGTAGCAC 60.335 57.143 15.94 6.70 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.