Multiple sequence alignment - TraesCS4A01G186800
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS4A01G186800
chr4A
100.000
2291
0
0
1
2291
465791657
465789367
0.000000e+00
4231.0
1
TraesCS4A01G186800
chr4A
90.556
180
14
2
1657
1834
16179068
16178890
3.800000e-58
235.0
2
TraesCS4A01G186800
chr2A
97.305
705
15
2
1
705
131680636
131681336
0.000000e+00
1194.0
3
TraesCS4A01G186800
chr2A
92.135
178
13
1
1658
1834
695979761
695979938
1.360000e-62
250.0
4
TraesCS4A01G186800
chr5A
96.657
688
19
4
1
687
544220146
544220830
0.000000e+00
1140.0
5
TraesCS4A01G186800
chr5A
83.206
393
57
6
70
456
643581346
643581735
3.620000e-93
351.0
6
TraesCS4A01G186800
chr5A
92.265
181
13
1
1656
1835
669909878
669909698
2.920000e-64
255.0
7
TraesCS4A01G186800
chr5A
90.860
186
15
2
1651
1834
692396417
692396602
4.890000e-62
248.0
8
TraesCS4A01G186800
chr5A
87.342
79
8
1
695
771
550498801
550498723
3.130000e-14
89.8
9
TraesCS4A01G186800
chr4D
90.239
502
30
7
1160
1646
111140407
111140904
2.480000e-179
638.0
10
TraesCS4A01G186800
chr4D
86.170
376
21
11
772
1136
111139900
111140255
5.970000e-101
377.0
11
TraesCS4A01G186800
chr4D
90.079
252
16
4
1833
2082
111140911
111141155
3.670000e-83
318.0
12
TraesCS4A01G186800
chr4D
91.176
136
2
5
2121
2253
111141711
111141839
2.340000e-40
176.0
13
TraesCS4A01G186800
chr4B
89.225
529
22
10
1160
1657
172321234
172321758
1.490000e-176
628.0
14
TraesCS4A01G186800
chr4B
86.026
458
27
17
1833
2274
172321749
172322185
7.460000e-125
457.0
15
TraesCS4A01G186800
chr4B
86.923
390
25
5
772
1136
172320711
172321099
4.550000e-112
414.0
16
TraesCS4A01G186800
chr7D
86.232
414
40
8
51
455
630308321
630307916
1.260000e-117
433.0
17
TraesCS4A01G186800
chr1D
87.966
349
35
6
70
415
460152051
460152395
2.740000e-109
405.0
18
TraesCS4A01G186800
chr2D
85.496
393
48
5
70
454
547148218
547148609
3.550000e-108
401.0
19
TraesCS4A01G186800
chr2D
83.081
396
55
9
70
459
649653029
649653418
1.300000e-92
350.0
20
TraesCS4A01G186800
chr2D
86.250
80
7
4
1217
1296
312026893
312026968
1.460000e-12
84.2
21
TraesCS4A01G186800
chr6A
84.422
398
50
8
70
459
39171385
39170992
4.620000e-102
381.0
22
TraesCS4A01G186800
chr6A
92.179
179
13
1
1658
1835
145746240
145746062
3.780000e-63
252.0
23
TraesCS4A01G186800
chr6A
90.110
182
17
1
1658
1838
587974490
587974671
3.800000e-58
235.0
24
TraesCS4A01G186800
chr1B
84.343
396
48
9
70
455
262523012
262523403
2.150000e-100
375.0
25
TraesCS4A01G186800
chr3A
92.179
179
12
2
1658
1834
1673717
1673539
3.780000e-63
252.0
26
TraesCS4A01G186800
chr1A
92.179
179
12
2
1657
1834
471710027
471710204
3.780000e-63
252.0
27
TraesCS4A01G186800
chr7A
91.061
179
14
2
1658
1834
549353689
549353511
8.180000e-60
241.0
28
TraesCS4A01G186800
chr7A
94.286
35
2
0
665
699
539555174
539555140
1.000000e-03
54.7
29
TraesCS4A01G186800
chr5B
90.441
136
7
4
458
593
232640615
232640744
8.410000e-40
174.0
30
TraesCS4A01G186800
chr5B
89.706
136
8
4
458
593
232642109
232642238
3.910000e-38
169.0
31
TraesCS4A01G186800
chr5B
90.826
109
9
1
593
701
232640799
232640906
6.600000e-31
145.0
32
TraesCS4A01G186800
chr5B
95.918
49
2
0
1
49
232640573
232640621
1.890000e-11
80.5
33
TraesCS4A01G186800
chr2B
88.000
75
6
3
1217
1291
379880968
379880897
4.060000e-13
86.1
34
TraesCS4A01G186800
chr7B
92.105
38
3
0
665
702
87014724
87014687
1.000000e-03
54.7
35
TraesCS4A01G186800
chr7B
94.286
35
2
0
665
699
728080859
728080893
1.000000e-03
54.7
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS4A01G186800
chr4A
465789367
465791657
2290
True
4231.000000
4231
100.000000
1
2291
1
chr4A.!!$R2
2290
1
TraesCS4A01G186800
chr2A
131680636
131681336
700
False
1194.000000
1194
97.305000
1
705
1
chr2A.!!$F1
704
2
TraesCS4A01G186800
chr5A
544220146
544220830
684
False
1140.000000
1140
96.657000
1
687
1
chr5A.!!$F1
686
3
TraesCS4A01G186800
chr4D
111139900
111141839
1939
False
377.250000
638
89.416000
772
2253
4
chr4D.!!$F1
1481
4
TraesCS4A01G186800
chr4B
172320711
172322185
1474
False
499.666667
628
87.391333
772
2274
3
chr4B.!!$F1
1502
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
639
641
1.66056
GCGCACAGGGCAGAAATCAT
61.661
55.0
0.3
0.0
45.17
2.45
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2193
2926
0.028505
CCATCATTGCTTCGCCTTCG
59.971
55.0
0.0
0.0
0.0
3.79
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
307
308
5.446143
TTTTGTACAGGTCGCATTTCAAT
57.554
34.783
0.00
0.00
0.00
2.57
362
363
9.019656
ACATATAACATCCTTGTTTACTTGCAA
57.980
29.630
0.00
0.00
43.57
4.08
514
516
3.714798
AGTCAAGACTGAACAAACCCCTA
59.285
43.478
1.20
0.00
40.75
3.53
519
521
3.655777
AGACTGAACAAACCCCTATCCAA
59.344
43.478
0.00
0.00
0.00
3.53
639
641
1.660560
GCGCACAGGGCAGAAATCAT
61.661
55.000
0.30
0.00
45.17
2.45
640
642
1.667236
CGCACAGGGCAGAAATCATA
58.333
50.000
0.00
0.00
45.17
2.15
705
707
4.137543
GCACCAAAGAGGATTTCCGATAT
58.862
43.478
0.00
0.00
41.22
1.63
706
708
5.305585
GCACCAAAGAGGATTTCCGATATA
58.694
41.667
0.00
0.00
41.22
0.86
707
709
5.940470
GCACCAAAGAGGATTTCCGATATAT
59.060
40.000
0.00
0.00
41.22
0.86
708
710
6.092807
GCACCAAAGAGGATTTCCGATATATC
59.907
42.308
2.34
2.34
41.22
1.63
709
711
7.161404
CACCAAAGAGGATTTCCGATATATCA
58.839
38.462
13.11
0.00
41.22
2.15
710
712
7.826252
CACCAAAGAGGATTTCCGATATATCAT
59.174
37.037
13.11
0.00
41.22
2.45
711
713
8.043710
ACCAAAGAGGATTTCCGATATATCATC
58.956
37.037
13.11
7.67
41.22
2.92
712
714
8.263640
CCAAAGAGGATTTCCGATATATCATCT
58.736
37.037
13.11
0.00
40.10
2.90
713
715
9.311916
CAAAGAGGATTTCCGATATATCATCTC
57.688
37.037
13.11
7.76
38.17
2.75
714
716
8.601047
AAGAGGATTTCCGATATATCATCTCA
57.399
34.615
13.11
0.00
38.17
3.27
715
717
8.780616
AGAGGATTTCCGATATATCATCTCAT
57.219
34.615
13.11
0.18
35.26
2.90
716
718
9.211410
AGAGGATTTCCGATATATCATCTCATT
57.789
33.333
13.11
0.00
35.26
2.57
717
719
9.829507
GAGGATTTCCGATATATCATCTCATTT
57.170
33.333
13.11
0.00
42.08
2.32
753
755
8.950007
TTTTATTCCTACAATGTTTCTTCCCT
57.050
30.769
0.00
0.00
0.00
4.20
756
758
9.847224
TTATTCCTACAATGTTTCTTCCCTATC
57.153
33.333
0.00
0.00
0.00
2.08
757
759
6.884472
TCCTACAATGTTTCTTCCCTATCA
57.116
37.500
0.00
0.00
0.00
2.15
758
760
7.265599
TCCTACAATGTTTCTTCCCTATCAA
57.734
36.000
0.00
0.00
0.00
2.57
759
761
7.110155
TCCTACAATGTTTCTTCCCTATCAAC
58.890
38.462
0.00
0.00
0.00
3.18
760
762
6.318900
CCTACAATGTTTCTTCCCTATCAACC
59.681
42.308
0.00
0.00
0.00
3.77
761
763
5.640147
ACAATGTTTCTTCCCTATCAACCA
58.360
37.500
0.00
0.00
0.00
3.67
762
764
6.074648
ACAATGTTTCTTCCCTATCAACCAA
58.925
36.000
0.00
0.00
0.00
3.67
763
765
6.553100
ACAATGTTTCTTCCCTATCAACCAAA
59.447
34.615
0.00
0.00
0.00
3.28
764
766
6.840780
ATGTTTCTTCCCTATCAACCAAAG
57.159
37.500
0.00
0.00
0.00
2.77
765
767
5.947663
TGTTTCTTCCCTATCAACCAAAGA
58.052
37.500
0.00
0.00
0.00
2.52
766
768
6.369629
TGTTTCTTCCCTATCAACCAAAGAA
58.630
36.000
0.00
0.00
32.54
2.52
767
769
6.490040
TGTTTCTTCCCTATCAACCAAAGAAG
59.510
38.462
0.00
0.00
35.06
2.85
768
770
5.179452
TCTTCCCTATCAACCAAAGAAGG
57.821
43.478
0.00
0.00
32.15
3.46
769
771
3.366052
TCCCTATCAACCAAAGAAGGC
57.634
47.619
0.00
0.00
0.00
4.35
770
772
2.025321
TCCCTATCAACCAAAGAAGGCC
60.025
50.000
0.00
0.00
0.00
5.19
803
805
2.198406
TGAAAACGTCAGTCACCGAAG
58.802
47.619
0.00
0.00
0.00
3.79
891
904
3.009115
TTCTTCCCCTGCCCTCCG
61.009
66.667
0.00
0.00
0.00
4.63
912
925
2.260869
CCAAGTCCCAACGCCACAG
61.261
63.158
0.00
0.00
0.00
3.66
954
967
6.071108
CCATAAATCCAACCAACACATAACCA
60.071
38.462
0.00
0.00
0.00
3.67
1024
1057
2.278596
CATCACCTCGGCCGTACG
60.279
66.667
27.15
15.80
0.00
3.67
1036
1069
2.580867
CGTACGCCTCTCTGCTGC
60.581
66.667
0.52
0.00
0.00
5.25
1048
1087
1.883544
CTGCTGCTGCCATCTCTCG
60.884
63.158
13.47
0.00
38.71
4.04
1065
1104
2.766400
CGTCCTGCTCCTCCTCGTC
61.766
68.421
0.00
0.00
0.00
4.20
1066
1105
2.438614
TCCTGCTCCTCCTCGTCG
60.439
66.667
0.00
0.00
0.00
5.12
1067
1106
4.200283
CCTGCTCCTCCTCGTCGC
62.200
72.222
0.00
0.00
0.00
5.19
1211
1378
3.555967
CGAAGGGGGAGATGGAGG
58.444
66.667
0.00
0.00
0.00
4.30
1357
1543
9.227777
TGATCAATATGGAGATTTTATCAGCAG
57.772
33.333
0.00
0.00
0.00
4.24
1365
1551
3.445096
AGATTTTATCAGCAGTTGGGCAC
59.555
43.478
0.00
0.00
35.83
5.01
1425
1612
9.145865
GTATATAAGCTGGTAGAGAAATCTTGC
57.854
37.037
0.00
0.00
0.00
4.01
1442
1630
3.565482
TCTTGCTGAGTTGTTTGTGATCC
59.435
43.478
0.00
0.00
0.00
3.36
1500
1688
7.497925
AAGAACACAGGAAAGAATCTTGTAC
57.502
36.000
0.00
0.00
45.71
2.90
1544
1732
2.107950
TGCTACTGTTGTGTATGGGC
57.892
50.000
0.00
0.00
0.00
5.36
1550
1738
0.322008
TGTTGTGTATGGGCGATGCA
60.322
50.000
0.00
0.00
0.00
3.96
1551
1739
1.024271
GTTGTGTATGGGCGATGCAT
58.976
50.000
0.00
0.00
0.00
3.96
1579
1767
9.691362
TTATTTGCTCAACTTTGGAAATCTAAC
57.309
29.630
0.00
0.00
0.00
2.34
1580
1768
6.959639
TTGCTCAACTTTGGAAATCTAACT
57.040
33.333
0.00
0.00
0.00
2.24
1595
1783
1.833630
CTAACTGCCATGTCCCTCTCA
59.166
52.381
0.00
0.00
0.00
3.27
1611
1799
3.583806
CTCTCAATCGCTGACCCATATC
58.416
50.000
0.00
0.00
0.00
1.63
1638
1832
2.290464
AGCTCTCGCTCGTACTACATT
58.710
47.619
0.00
0.00
45.15
2.71
1657
1856
2.480224
TTACGTACATGCGTAGGAGC
57.520
50.000
0.00
0.00
46.08
4.70
1691
1890
4.539235
AAAAATGAAGGGCGGGCT
57.461
50.000
0.26
0.00
0.00
5.19
1692
1891
1.974543
AAAAATGAAGGGCGGGCTG
59.025
52.632
0.26
0.00
0.00
4.85
1693
1892
0.541764
AAAAATGAAGGGCGGGCTGA
60.542
50.000
0.00
0.00
0.00
4.26
1694
1893
0.967380
AAAATGAAGGGCGGGCTGAG
60.967
55.000
0.00
0.00
0.00
3.35
1695
1894
4.496336
ATGAAGGGCGGGCTGAGC
62.496
66.667
0.00
0.00
0.00
4.26
1706
1905
4.025858
GCTGAGCTGCCTGGGTCA
62.026
66.667
0.00
0.00
40.71
4.02
1707
1906
2.046507
CTGAGCTGCCTGGGTCAC
60.047
66.667
0.00
0.00
38.55
3.67
1708
1907
3.947132
CTGAGCTGCCTGGGTCACG
62.947
68.421
0.00
0.00
38.55
4.35
1712
1911
2.594303
CTGCCTGGGTCACGCAAA
60.594
61.111
0.00
0.00
30.85
3.68
1713
1912
1.973281
CTGCCTGGGTCACGCAAAT
60.973
57.895
0.00
0.00
30.85
2.32
1714
1913
0.676466
CTGCCTGGGTCACGCAAATA
60.676
55.000
0.00
0.00
30.85
1.40
1715
1914
0.034574
TGCCTGGGTCACGCAAATAT
60.035
50.000
0.00
0.00
0.00
1.28
1716
1915
0.381801
GCCTGGGTCACGCAAATATG
59.618
55.000
0.00
0.00
0.00
1.78
1717
1916
1.750193
CCTGGGTCACGCAAATATGT
58.250
50.000
0.00
0.00
0.00
2.29
1718
1917
1.401552
CCTGGGTCACGCAAATATGTG
59.598
52.381
0.00
0.00
42.84
3.21
1728
1927
3.446799
CGCAAATATGTGTTGGATTGGG
58.553
45.455
0.00
0.00
32.29
4.12
1729
1928
3.197265
GCAAATATGTGTTGGATTGGGC
58.803
45.455
0.00
0.00
0.00
5.36
1730
1929
3.795877
CAAATATGTGTTGGATTGGGCC
58.204
45.455
0.00
0.00
0.00
5.80
1731
1930
3.403228
AATATGTGTTGGATTGGGCCT
57.597
42.857
4.53
0.00
0.00
5.19
1732
1931
4.534647
AATATGTGTTGGATTGGGCCTA
57.465
40.909
4.53
0.00
0.00
3.93
1733
1932
2.143876
ATGTGTTGGATTGGGCCTAC
57.856
50.000
4.53
0.00
34.79
3.18
1734
1933
0.774276
TGTGTTGGATTGGGCCTACA
59.226
50.000
4.53
0.00
40.50
2.74
1735
1934
1.145945
TGTGTTGGATTGGGCCTACAA
59.854
47.619
4.53
0.00
43.42
2.41
1736
1935
1.818674
GTGTTGGATTGGGCCTACAAG
59.181
52.381
4.53
0.00
43.42
3.16
1737
1936
1.272425
TGTTGGATTGGGCCTACAAGG
60.272
52.381
4.53
0.00
39.98
3.61
1738
1937
1.005450
GTTGGATTGGGCCTACAAGGA
59.995
52.381
4.53
0.00
37.67
3.36
1739
1938
0.918983
TGGATTGGGCCTACAAGGAG
59.081
55.000
4.53
0.00
37.67
3.69
1740
1939
0.919710
GGATTGGGCCTACAAGGAGT
59.080
55.000
4.53
0.00
37.67
3.85
1741
1940
1.285078
GGATTGGGCCTACAAGGAGTT
59.715
52.381
4.53
0.00
37.67
3.01
1742
1941
2.369394
GATTGGGCCTACAAGGAGTTG
58.631
52.381
4.53
0.00
37.67
3.16
1743
1942
0.404040
TTGGGCCTACAAGGAGTTGG
59.596
55.000
4.53
0.00
44.70
3.77
1744
1943
0.474854
TGGGCCTACAAGGAGTTGGA
60.475
55.000
4.53
0.00
44.69
3.53
1745
1944
3.553109
GGCCTACAAGGAGTTGGAC
57.447
57.895
0.00
0.00
44.69
4.02
1746
1945
0.984995
GGCCTACAAGGAGTTGGACT
59.015
55.000
0.00
0.00
46.34
3.85
1747
1946
1.339151
GGCCTACAAGGAGTTGGACTG
60.339
57.143
0.00
0.00
46.34
3.51
1748
1947
1.339151
GCCTACAAGGAGTTGGACTGG
60.339
57.143
0.00
0.00
44.69
4.00
1749
1948
2.257207
CCTACAAGGAGTTGGACTGGA
58.743
52.381
0.00
0.00
44.69
3.86
1750
1949
2.637872
CCTACAAGGAGTTGGACTGGAA
59.362
50.000
0.00
0.00
44.69
3.53
1751
1950
2.640316
ACAAGGAGTTGGACTGGAAC
57.360
50.000
0.00
0.00
38.07
3.62
1752
1951
2.127708
ACAAGGAGTTGGACTGGAACT
58.872
47.619
0.00
0.00
38.07
3.01
1753
1952
2.509964
ACAAGGAGTTGGACTGGAACTT
59.490
45.455
0.00
0.00
38.07
2.66
1754
1953
3.714798
ACAAGGAGTTGGACTGGAACTTA
59.285
43.478
0.00
0.00
38.07
2.24
1755
1954
4.165372
ACAAGGAGTTGGACTGGAACTTAA
59.835
41.667
0.00
0.00
38.07
1.85
1756
1955
5.130350
CAAGGAGTTGGACTGGAACTTAAA
58.870
41.667
0.00
0.00
33.71
1.52
1757
1956
5.382664
AGGAGTTGGACTGGAACTTAAAA
57.617
39.130
0.00
0.00
33.71
1.52
1758
1957
5.131067
AGGAGTTGGACTGGAACTTAAAAC
58.869
41.667
0.00
0.00
33.71
2.43
1759
1958
5.104067
AGGAGTTGGACTGGAACTTAAAACT
60.104
40.000
0.00
0.00
33.71
2.66
1760
1959
6.100714
AGGAGTTGGACTGGAACTTAAAACTA
59.899
38.462
0.00
0.00
33.71
2.24
1761
1960
6.427242
GGAGTTGGACTGGAACTTAAAACTAG
59.573
42.308
0.00
0.00
33.71
2.57
1762
1961
6.896883
AGTTGGACTGGAACTTAAAACTAGT
58.103
36.000
0.00
0.00
28.94
2.57
1763
1962
8.026396
AGTTGGACTGGAACTTAAAACTAGTA
57.974
34.615
0.00
0.00
28.94
1.82
1764
1963
8.148999
AGTTGGACTGGAACTTAAAACTAGTAG
58.851
37.037
0.00
0.00
28.94
2.57
1765
1964
7.607615
TGGACTGGAACTTAAAACTAGTAGT
57.392
36.000
0.00
0.00
0.00
2.73
1766
1965
8.710749
TGGACTGGAACTTAAAACTAGTAGTA
57.289
34.615
2.50
0.00
0.00
1.82
1767
1966
8.800332
TGGACTGGAACTTAAAACTAGTAGTAG
58.200
37.037
2.50
2.87
0.00
2.57
1768
1967
9.018582
GGACTGGAACTTAAAACTAGTAGTAGA
57.981
37.037
11.68
0.00
0.00
2.59
1786
1985
9.338622
AGTAGTAGAAACAAATTTTACAGTGCT
57.661
29.630
0.00
0.00
0.00
4.40
1787
1986
9.382244
GTAGTAGAAACAAATTTTACAGTGCTG
57.618
33.333
0.00
0.00
0.00
4.41
1788
1987
7.425606
AGTAGAAACAAATTTTACAGTGCTGG
58.574
34.615
4.11
0.00
34.19
4.85
1789
1988
6.463995
AGAAACAAATTTTACAGTGCTGGA
57.536
33.333
4.11
0.00
34.19
3.86
1790
1989
6.507023
AGAAACAAATTTTACAGTGCTGGAG
58.493
36.000
4.11
0.00
34.19
3.86
1791
1990
6.321181
AGAAACAAATTTTACAGTGCTGGAGA
59.679
34.615
4.11
0.00
34.19
3.71
1792
1991
5.695851
ACAAATTTTACAGTGCTGGAGAG
57.304
39.130
4.11
0.00
34.19
3.20
1793
1992
4.520492
ACAAATTTTACAGTGCTGGAGAGG
59.480
41.667
4.11
0.00
34.19
3.69
1794
1993
4.373156
AATTTTACAGTGCTGGAGAGGT
57.627
40.909
4.11
0.00
34.19
3.85
1795
1994
2.839486
TTTACAGTGCTGGAGAGGTG
57.161
50.000
4.11
0.00
34.19
4.00
1796
1995
1.717032
TTACAGTGCTGGAGAGGTGT
58.283
50.000
4.11
0.00
34.19
4.16
1797
1996
1.717032
TACAGTGCTGGAGAGGTGTT
58.283
50.000
4.11
0.00
34.19
3.32
1798
1997
0.839946
ACAGTGCTGGAGAGGTGTTT
59.160
50.000
4.11
0.00
34.19
2.83
1799
1998
1.233019
CAGTGCTGGAGAGGTGTTTG
58.767
55.000
0.00
0.00
0.00
2.93
1800
1999
1.131638
AGTGCTGGAGAGGTGTTTGA
58.868
50.000
0.00
0.00
0.00
2.69
1801
2000
1.071385
AGTGCTGGAGAGGTGTTTGAG
59.929
52.381
0.00
0.00
0.00
3.02
1802
2001
0.250467
TGCTGGAGAGGTGTTTGAGC
60.250
55.000
0.00
0.00
0.00
4.26
1803
2002
0.957888
GCTGGAGAGGTGTTTGAGCC
60.958
60.000
0.00
0.00
0.00
4.70
1804
2003
0.689623
CTGGAGAGGTGTTTGAGCCT
59.310
55.000
0.00
0.00
37.91
4.58
1805
2004
0.397941
TGGAGAGGTGTTTGAGCCTG
59.602
55.000
0.00
0.00
34.81
4.85
1806
2005
0.398318
GGAGAGGTGTTTGAGCCTGT
59.602
55.000
0.00
0.00
34.81
4.00
1807
2006
1.202818
GGAGAGGTGTTTGAGCCTGTT
60.203
52.381
0.00
0.00
34.81
3.16
1808
2007
2.038557
GGAGAGGTGTTTGAGCCTGTTA
59.961
50.000
0.00
0.00
34.81
2.41
1809
2008
3.496160
GGAGAGGTGTTTGAGCCTGTTAA
60.496
47.826
0.00
0.00
34.81
2.01
1810
2009
4.134563
GAGAGGTGTTTGAGCCTGTTAAA
58.865
43.478
0.00
0.00
34.81
1.52
1811
2010
4.137543
AGAGGTGTTTGAGCCTGTTAAAG
58.862
43.478
0.00
0.00
34.81
1.85
1812
2011
2.623416
AGGTGTTTGAGCCTGTTAAAGC
59.377
45.455
0.00
0.00
33.13
3.51
1813
2012
2.288213
GGTGTTTGAGCCTGTTAAAGCC
60.288
50.000
0.00
0.00
0.00
4.35
1814
2013
1.960689
TGTTTGAGCCTGTTAAAGCCC
59.039
47.619
0.00
0.00
0.00
5.19
1815
2014
1.272490
GTTTGAGCCTGTTAAAGCCCC
59.728
52.381
0.00
0.00
0.00
5.80
1816
2015
0.777446
TTGAGCCTGTTAAAGCCCCT
59.223
50.000
0.00
0.00
0.00
4.79
1817
2016
0.328258
TGAGCCTGTTAAAGCCCCTC
59.672
55.000
0.00
0.00
0.00
4.30
1818
2017
0.328258
GAGCCTGTTAAAGCCCCTCA
59.672
55.000
0.00
0.00
0.00
3.86
1819
2018
0.329596
AGCCTGTTAAAGCCCCTCAG
59.670
55.000
0.00
0.00
0.00
3.35
1820
2019
0.038310
GCCTGTTAAAGCCCCTCAGT
59.962
55.000
0.00
0.00
0.00
3.41
1821
2020
1.280998
GCCTGTTAAAGCCCCTCAGTA
59.719
52.381
0.00
0.00
0.00
2.74
1822
2021
2.681097
GCCTGTTAAAGCCCCTCAGTAG
60.681
54.545
0.00
0.00
0.00
2.57
1823
2022
2.838202
CCTGTTAAAGCCCCTCAGTAGA
59.162
50.000
0.00
0.00
0.00
2.59
1824
2023
3.263425
CCTGTTAAAGCCCCTCAGTAGAA
59.737
47.826
0.00
0.00
0.00
2.10
1825
2024
4.080299
CCTGTTAAAGCCCCTCAGTAGAAT
60.080
45.833
0.00
0.00
0.00
2.40
1826
2025
5.099042
TGTTAAAGCCCCTCAGTAGAATC
57.901
43.478
0.00
0.00
0.00
2.52
1827
2026
2.990066
AAAGCCCCTCAGTAGAATCG
57.010
50.000
0.00
0.00
0.00
3.34
1828
2027
0.466124
AAGCCCCTCAGTAGAATCGC
59.534
55.000
0.00
0.00
0.00
4.58
1829
2028
1.069935
GCCCCTCAGTAGAATCGCC
59.930
63.158
0.00
0.00
0.00
5.54
1830
2029
1.749033
CCCCTCAGTAGAATCGCCC
59.251
63.158
0.00
0.00
0.00
6.13
1831
2030
1.749033
CCCTCAGTAGAATCGCCCC
59.251
63.158
0.00
0.00
0.00
5.80
1832
2031
0.760945
CCCTCAGTAGAATCGCCCCT
60.761
60.000
0.00
0.00
0.00
4.79
1833
2032
0.390860
CCTCAGTAGAATCGCCCCTG
59.609
60.000
0.00
0.00
0.00
4.45
1834
2033
0.249657
CTCAGTAGAATCGCCCCTGC
60.250
60.000
0.00
0.00
0.00
4.85
1835
2034
1.227674
CAGTAGAATCGCCCCTGCC
60.228
63.158
0.00
0.00
0.00
4.85
1836
2035
1.383248
AGTAGAATCGCCCCTGCCT
60.383
57.895
0.00
0.00
0.00
4.75
1837
2036
0.105658
AGTAGAATCGCCCCTGCCTA
60.106
55.000
0.00
0.00
0.00
3.93
1838
2037
0.318762
GTAGAATCGCCCCTGCCTAG
59.681
60.000
0.00
0.00
0.00
3.02
1839
2038
0.832135
TAGAATCGCCCCTGCCTAGG
60.832
60.000
3.67
3.67
44.18
3.02
1893
2096
1.882352
GCAGTTCAGACCACGGGATTT
60.882
52.381
0.00
0.00
0.00
2.17
1906
2109
4.124238
CACGGGATTTGATTATGGTACGT
58.876
43.478
0.00
0.00
0.00
3.57
1907
2110
4.025229
CACGGGATTTGATTATGGTACGTG
60.025
45.833
0.00
0.00
41.21
4.49
1908
2111
3.059188
CGGGATTTGATTATGGTACGTGC
60.059
47.826
0.00
0.00
0.00
5.34
1909
2112
3.880490
GGGATTTGATTATGGTACGTGCA
59.120
43.478
5.86
0.00
0.00
4.57
1910
2113
4.024048
GGGATTTGATTATGGTACGTGCAG
60.024
45.833
5.86
0.00
0.00
4.41
2035
2239
2.109799
CCTACGCAGATGGGCAGG
59.890
66.667
2.10
2.10
35.57
4.85
2057
2261
0.034059
CAACCGAGTGCAGGTCTTCT
59.966
55.000
0.00
0.00
41.95
2.85
2058
2262
0.759346
AACCGAGTGCAGGTCTTCTT
59.241
50.000
0.00
0.00
41.95
2.52
2059
2263
0.318762
ACCGAGTGCAGGTCTTCTTC
59.681
55.000
0.00
0.00
37.44
2.87
2112
2326
2.882876
CTGTACAGGACGGACGGG
59.117
66.667
15.49
0.00
36.40
5.28
2169
2897
6.038714
AGACAGTCAAAAACTCAATCTTGACC
59.961
38.462
2.66
0.00
45.67
4.02
2193
2926
3.338249
TCAAGACTTGATGGTAGCAAGC
58.662
45.455
13.99
0.00
45.00
4.01
2194
2927
2.015736
AGACTTGATGGTAGCAAGCG
57.984
50.000
0.00
0.00
45.00
4.68
2195
2928
1.550524
AGACTTGATGGTAGCAAGCGA
59.449
47.619
0.00
0.00
45.00
4.93
2196
2929
2.028112
AGACTTGATGGTAGCAAGCGAA
60.028
45.455
0.00
0.00
45.00
4.70
2197
2930
2.349886
GACTTGATGGTAGCAAGCGAAG
59.650
50.000
0.00
1.73
45.00
3.79
2274
3010
1.478510
GCTAGCTAGCTTGAGACCACA
59.521
52.381
33.71
4.19
45.62
4.17
2275
3011
2.737039
GCTAGCTAGCTTGAGACCACAC
60.737
54.545
33.71
4.59
45.62
3.82
2276
3012
0.244994
AGCTAGCTTGAGACCACACG
59.755
55.000
12.68
0.00
0.00
4.49
2277
3013
0.038159
GCTAGCTTGAGACCACACGT
60.038
55.000
7.70
0.00
0.00
4.49
2278
3014
1.201647
GCTAGCTTGAGACCACACGTA
59.798
52.381
7.70
0.00
0.00
3.57
2279
3015
2.864968
CTAGCTTGAGACCACACGTAC
58.135
52.381
0.00
0.00
0.00
3.67
2280
3016
0.039437
AGCTTGAGACCACACGTACG
60.039
55.000
15.01
15.01
0.00
3.67
2281
3017
0.318445
GCTTGAGACCACACGTACGT
60.318
55.000
16.72
16.72
0.00
3.57
2282
3018
1.069022
GCTTGAGACCACACGTACGTA
60.069
52.381
22.34
0.00
0.00
3.57
2283
3019
2.578495
CTTGAGACCACACGTACGTAC
58.422
52.381
22.34
15.90
0.00
3.67
2284
3020
0.874390
TGAGACCACACGTACGTACC
59.126
55.000
22.34
8.40
0.00
3.34
2285
3021
0.874390
GAGACCACACGTACGTACCA
59.126
55.000
22.34
0.00
0.00
3.25
2286
3022
1.266718
GAGACCACACGTACGTACCAA
59.733
52.381
22.34
0.00
0.00
3.67
2287
3023
1.001378
AGACCACACGTACGTACCAAC
60.001
52.381
22.34
12.53
0.00
3.77
2288
3024
0.031994
ACCACACGTACGTACCAACC
59.968
55.000
22.34
0.00
0.00
3.77
2289
3025
0.314935
CCACACGTACGTACCAACCT
59.685
55.000
22.34
0.00
0.00
3.50
2290
3026
1.269726
CCACACGTACGTACCAACCTT
60.270
52.381
22.34
0.00
0.00
3.50
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
514
516
4.591321
TGGGCTAGAAAAGATGTTGGAT
57.409
40.909
0.00
0.00
0.00
3.41
519
521
4.851639
ACTGATGGGCTAGAAAAGATGT
57.148
40.909
0.00
0.00
0.00
3.06
727
729
9.374711
AGGGAAGAAACATTGTAGGAATAAAAA
57.625
29.630
0.00
0.00
0.00
1.94
728
730
8.950007
AGGGAAGAAACATTGTAGGAATAAAA
57.050
30.769
0.00
0.00
0.00
1.52
730
732
9.847224
GATAGGGAAGAAACATTGTAGGAATAA
57.153
33.333
0.00
0.00
0.00
1.40
731
733
8.998814
TGATAGGGAAGAAACATTGTAGGAATA
58.001
33.333
0.00
0.00
0.00
1.75
732
734
7.872138
TGATAGGGAAGAAACATTGTAGGAAT
58.128
34.615
0.00
0.00
0.00
3.01
733
735
7.265599
TGATAGGGAAGAAACATTGTAGGAA
57.734
36.000
0.00
0.00
0.00
3.36
734
736
6.884472
TGATAGGGAAGAAACATTGTAGGA
57.116
37.500
0.00
0.00
0.00
2.94
735
737
6.318900
GGTTGATAGGGAAGAAACATTGTAGG
59.681
42.308
0.00
0.00
0.00
3.18
736
738
6.884295
TGGTTGATAGGGAAGAAACATTGTAG
59.116
38.462
0.00
0.00
0.00
2.74
737
739
6.785076
TGGTTGATAGGGAAGAAACATTGTA
58.215
36.000
0.00
0.00
0.00
2.41
738
740
5.640147
TGGTTGATAGGGAAGAAACATTGT
58.360
37.500
0.00
0.00
0.00
2.71
739
741
6.588719
TTGGTTGATAGGGAAGAAACATTG
57.411
37.500
0.00
0.00
0.00
2.82
740
742
7.010160
TCTTTGGTTGATAGGGAAGAAACATT
58.990
34.615
0.00
0.00
0.00
2.71
741
743
6.552008
TCTTTGGTTGATAGGGAAGAAACAT
58.448
36.000
0.00
0.00
0.00
2.71
742
744
5.947663
TCTTTGGTTGATAGGGAAGAAACA
58.052
37.500
0.00
0.00
0.00
2.83
743
745
6.071896
CCTTCTTTGGTTGATAGGGAAGAAAC
60.072
42.308
0.00
0.00
34.05
2.78
744
746
6.010219
CCTTCTTTGGTTGATAGGGAAGAAA
58.990
40.000
0.00
0.00
34.05
2.52
745
747
5.570320
CCTTCTTTGGTTGATAGGGAAGAA
58.430
41.667
0.00
0.00
32.96
2.52
746
748
4.567747
GCCTTCTTTGGTTGATAGGGAAGA
60.568
45.833
0.00
0.00
32.96
2.87
747
749
3.696548
GCCTTCTTTGGTTGATAGGGAAG
59.303
47.826
0.00
0.00
0.00
3.46
748
750
3.563479
GGCCTTCTTTGGTTGATAGGGAA
60.563
47.826
0.00
0.00
0.00
3.97
749
751
2.025321
GGCCTTCTTTGGTTGATAGGGA
60.025
50.000
0.00
0.00
0.00
4.20
750
752
2.379005
GGCCTTCTTTGGTTGATAGGG
58.621
52.381
0.00
0.00
0.00
3.53
751
753
2.291540
TGGGCCTTCTTTGGTTGATAGG
60.292
50.000
4.53
0.00
0.00
2.57
752
754
3.085952
TGGGCCTTCTTTGGTTGATAG
57.914
47.619
4.53
0.00
0.00
2.08
753
755
3.756082
ATGGGCCTTCTTTGGTTGATA
57.244
42.857
4.53
0.00
0.00
2.15
754
756
2.568509
CAATGGGCCTTCTTTGGTTGAT
59.431
45.455
4.53
0.00
0.00
2.57
755
757
1.969923
CAATGGGCCTTCTTTGGTTGA
59.030
47.619
4.53
0.00
0.00
3.18
756
758
1.608801
GCAATGGGCCTTCTTTGGTTG
60.609
52.381
4.53
0.00
36.11
3.77
757
759
0.686789
GCAATGGGCCTTCTTTGGTT
59.313
50.000
4.53
0.00
36.11
3.67
758
760
0.471591
TGCAATGGGCCTTCTTTGGT
60.472
50.000
4.53
0.00
43.89
3.67
759
761
0.248289
CTGCAATGGGCCTTCTTTGG
59.752
55.000
4.53
0.00
43.89
3.28
760
762
0.390735
GCTGCAATGGGCCTTCTTTG
60.391
55.000
4.53
2.91
43.89
2.77
761
763
1.880819
CGCTGCAATGGGCCTTCTTT
61.881
55.000
4.53
0.00
43.89
2.52
762
764
2.345760
CGCTGCAATGGGCCTTCTT
61.346
57.895
4.53
0.00
43.89
2.52
763
765
2.753043
CGCTGCAATGGGCCTTCT
60.753
61.111
4.53
0.00
43.89
2.85
764
766
2.158561
AAACGCTGCAATGGGCCTTC
62.159
55.000
4.53
0.00
43.89
3.46
765
767
2.209315
AAACGCTGCAATGGGCCTT
61.209
52.632
4.53
0.00
43.89
4.35
766
768
2.601367
AAACGCTGCAATGGGCCT
60.601
55.556
4.53
0.00
43.89
5.19
767
769
2.432972
CAAACGCTGCAATGGGCC
60.433
61.111
0.00
0.00
43.89
5.80
768
770
0.599728
TTTCAAACGCTGCAATGGGC
60.600
50.000
0.00
0.00
45.13
5.36
769
771
1.526464
GTTTTCAAACGCTGCAATGGG
59.474
47.619
0.00
0.00
0.00
4.00
770
772
2.928295
GTTTTCAAACGCTGCAATGG
57.072
45.000
0.00
0.00
0.00
3.16
822
826
5.050972
GCATAAATGTAGCTAGGTTGACGTC
60.051
44.000
9.11
9.11
0.00
4.34
891
904
2.671963
GGCGTTGGGACTTGGGAC
60.672
66.667
0.00
0.00
0.00
4.46
912
925
2.671963
GGGGTGTTGGTTCGGAGC
60.672
66.667
0.00
0.00
0.00
4.70
954
967
4.647611
TCTTCGTTTGAGAGAGAGAGAGT
58.352
43.478
0.00
0.00
0.00
3.24
1024
1057
3.700831
ATGGCAGCAGCAGAGAGGC
62.701
63.158
2.65
0.00
44.61
4.70
1036
1069
1.227205
GCAGGACGAGAGATGGCAG
60.227
63.158
0.00
0.00
0.00
4.85
1048
1087
2.766400
CGACGAGGAGGAGCAGGAC
61.766
68.421
0.00
0.00
0.00
3.85
1169
1336
2.436646
CGCCGCAACCTTCATCCT
60.437
61.111
0.00
0.00
0.00
3.24
1195
1362
2.812619
CGCCTCCATCTCCCCCTTC
61.813
68.421
0.00
0.00
0.00
3.46
1211
1378
2.207590
TCATCAAGCACTCATCATCGC
58.792
47.619
0.00
0.00
0.00
4.58
1376
1563
1.067706
TCGAGTACCCGATTCGCAAAA
60.068
47.619
0.00
0.00
37.22
2.44
1378
1565
0.742505
ATCGAGTACCCGATTCGCAA
59.257
50.000
6.44
0.00
45.87
4.85
1385
1572
5.942236
AGCTTATATACAATCGAGTACCCGA
59.058
40.000
0.72
0.72
43.16
5.14
1386
1573
6.028368
CAGCTTATATACAATCGAGTACCCG
58.972
44.000
0.00
0.00
0.00
5.28
1425
1612
2.096069
CAGCGGATCACAAACAACTCAG
60.096
50.000
0.00
0.00
0.00
3.35
1500
1688
5.818136
ATCATTATTGTTCAAGGGTGACG
57.182
39.130
0.00
0.00
31.90
4.35
1544
1732
7.096353
CCAAAGTTGAGCAAATAATATGCATCG
60.096
37.037
0.19
0.00
46.22
3.84
1579
1767
1.809271
CGATTGAGAGGGACATGGCAG
60.809
57.143
0.00
0.00
0.00
4.85
1580
1768
0.178767
CGATTGAGAGGGACATGGCA
59.821
55.000
0.00
0.00
0.00
4.92
1595
1783
2.373169
ACATGGATATGGGTCAGCGATT
59.627
45.455
0.00
0.00
38.66
3.34
1638
1832
1.744522
TGCTCCTACGCATGTACGTAA
59.255
47.619
0.00
0.00
46.90
3.18
1674
1873
0.541764
TCAGCCCGCCCTTCATTTTT
60.542
50.000
0.00
0.00
0.00
1.94
1675
1874
0.967380
CTCAGCCCGCCCTTCATTTT
60.967
55.000
0.00
0.00
0.00
1.82
1676
1875
1.379044
CTCAGCCCGCCCTTCATTT
60.379
57.895
0.00
0.00
0.00
2.32
1677
1876
2.273449
CTCAGCCCGCCCTTCATT
59.727
61.111
0.00
0.00
0.00
2.57
1678
1877
4.496336
GCTCAGCCCGCCCTTCAT
62.496
66.667
0.00
0.00
0.00
2.57
1689
1888
4.025858
TGACCCAGGCAGCTCAGC
62.026
66.667
0.00
0.00
0.00
4.26
1690
1889
2.046507
GTGACCCAGGCAGCTCAG
60.047
66.667
0.00
0.00
0.00
3.35
1691
1890
4.007644
CGTGACCCAGGCAGCTCA
62.008
66.667
0.00
0.00
0.00
4.26
1697
1896
0.381801
CATATTTGCGTGACCCAGGC
59.618
55.000
4.86
4.86
44.21
4.85
1698
1897
1.401552
CACATATTTGCGTGACCCAGG
59.598
52.381
0.00
0.00
35.02
4.45
1699
1898
2.083774
ACACATATTTGCGTGACCCAG
58.916
47.619
0.00
0.00
36.91
4.45
1700
1899
2.192664
ACACATATTTGCGTGACCCA
57.807
45.000
0.00
0.00
36.91
4.51
1701
1900
2.415357
CCAACACATATTTGCGTGACCC
60.415
50.000
0.00
0.00
36.91
4.46
1702
1901
2.486203
TCCAACACATATTTGCGTGACC
59.514
45.455
0.00
0.00
36.91
4.02
1703
1902
3.822594
TCCAACACATATTTGCGTGAC
57.177
42.857
0.00
0.00
36.91
3.67
1704
1903
4.380339
CCAATCCAACACATATTTGCGTGA
60.380
41.667
0.00
0.00
36.91
4.35
1705
1904
3.858812
CCAATCCAACACATATTTGCGTG
59.141
43.478
0.00
0.00
39.10
5.34
1706
1905
3.119173
CCCAATCCAACACATATTTGCGT
60.119
43.478
0.00
0.00
0.00
5.24
1707
1906
3.446799
CCCAATCCAACACATATTTGCG
58.553
45.455
0.00
0.00
0.00
4.85
1708
1907
3.197265
GCCCAATCCAACACATATTTGC
58.803
45.455
0.00
0.00
0.00
3.68
1709
1908
3.451902
AGGCCCAATCCAACACATATTTG
59.548
43.478
0.00
0.00
0.00
2.32
1710
1909
3.723325
AGGCCCAATCCAACACATATTT
58.277
40.909
0.00
0.00
0.00
1.40
1711
1910
3.403228
AGGCCCAATCCAACACATATT
57.597
42.857
0.00
0.00
0.00
1.28
1712
1911
3.204158
TGTAGGCCCAATCCAACACATAT
59.796
43.478
0.00
0.00
0.00
1.78
1713
1912
2.578480
TGTAGGCCCAATCCAACACATA
59.422
45.455
0.00
0.00
0.00
2.29
1714
1913
1.357420
TGTAGGCCCAATCCAACACAT
59.643
47.619
0.00
0.00
0.00
3.21
1715
1914
0.774276
TGTAGGCCCAATCCAACACA
59.226
50.000
0.00
0.00
0.00
3.72
1716
1915
1.818674
CTTGTAGGCCCAATCCAACAC
59.181
52.381
0.00
0.00
0.00
3.32
1717
1916
1.272425
CCTTGTAGGCCCAATCCAACA
60.272
52.381
0.00
0.00
0.00
3.33
1718
1917
1.005450
TCCTTGTAGGCCCAATCCAAC
59.995
52.381
0.00
0.00
34.61
3.77
1719
1918
1.284785
CTCCTTGTAGGCCCAATCCAA
59.715
52.381
0.00
0.00
34.61
3.53
1720
1919
0.918983
CTCCTTGTAGGCCCAATCCA
59.081
55.000
0.00
0.00
34.61
3.41
1721
1920
0.919710
ACTCCTTGTAGGCCCAATCC
59.080
55.000
0.00
0.00
34.61
3.01
1722
1921
2.369394
CAACTCCTTGTAGGCCCAATC
58.631
52.381
0.00
0.00
34.61
2.67
1723
1922
1.005924
CCAACTCCTTGTAGGCCCAAT
59.994
52.381
0.00
0.00
34.61
3.16
1724
1923
0.404040
CCAACTCCTTGTAGGCCCAA
59.596
55.000
0.00
0.00
34.61
4.12
1725
1924
0.474854
TCCAACTCCTTGTAGGCCCA
60.475
55.000
0.00
0.00
34.61
5.36
1726
1925
0.035343
GTCCAACTCCTTGTAGGCCC
60.035
60.000
0.00
0.00
34.61
5.80
1727
1926
0.984995
AGTCCAACTCCTTGTAGGCC
59.015
55.000
0.00
0.00
34.61
5.19
1728
1927
1.339151
CCAGTCCAACTCCTTGTAGGC
60.339
57.143
0.00
0.00
34.61
3.93
1729
1928
2.257207
TCCAGTCCAACTCCTTGTAGG
58.743
52.381
0.00
0.00
36.46
3.18
1730
1929
3.325135
AGTTCCAGTCCAACTCCTTGTAG
59.675
47.826
0.00
0.00
27.00
2.74
1731
1930
3.314693
AGTTCCAGTCCAACTCCTTGTA
58.685
45.455
0.00
0.00
27.00
2.41
1732
1931
2.127708
AGTTCCAGTCCAACTCCTTGT
58.872
47.619
0.00
0.00
27.00
3.16
1733
1932
2.938956
AGTTCCAGTCCAACTCCTTG
57.061
50.000
0.00
0.00
27.00
3.61
1734
1933
5.382664
TTTAAGTTCCAGTCCAACTCCTT
57.617
39.130
0.00
0.00
32.71
3.36
1735
1934
5.104067
AGTTTTAAGTTCCAGTCCAACTCCT
60.104
40.000
0.00
0.00
32.71
3.69
1736
1935
5.131067
AGTTTTAAGTTCCAGTCCAACTCC
58.869
41.667
0.00
0.00
32.71
3.85
1737
1936
6.990939
ACTAGTTTTAAGTTCCAGTCCAACTC
59.009
38.462
0.00
0.00
32.71
3.01
1738
1937
6.896883
ACTAGTTTTAAGTTCCAGTCCAACT
58.103
36.000
0.00
0.00
35.51
3.16
1739
1938
7.930325
ACTACTAGTTTTAAGTTCCAGTCCAAC
59.070
37.037
0.00
0.00
0.00
3.77
1740
1939
8.026396
ACTACTAGTTTTAAGTTCCAGTCCAA
57.974
34.615
0.00
0.00
0.00
3.53
1741
1940
7.607615
ACTACTAGTTTTAAGTTCCAGTCCA
57.392
36.000
0.00
0.00
0.00
4.02
1742
1941
9.018582
TCTACTACTAGTTTTAAGTTCCAGTCC
57.981
37.037
0.00
0.00
0.00
3.85
1760
1959
9.338622
AGCACTGTAAAATTTGTTTCTACTACT
57.661
29.630
0.00
0.00
0.00
2.57
1761
1960
9.382244
CAGCACTGTAAAATTTGTTTCTACTAC
57.618
33.333
0.00
0.00
0.00
2.73
1762
1961
8.564574
CCAGCACTGTAAAATTTGTTTCTACTA
58.435
33.333
0.00
0.00
0.00
1.82
1763
1962
7.284489
TCCAGCACTGTAAAATTTGTTTCTACT
59.716
33.333
0.00
0.00
0.00
2.57
1764
1963
7.422399
TCCAGCACTGTAAAATTTGTTTCTAC
58.578
34.615
0.00
0.00
0.00
2.59
1765
1964
7.500892
TCTCCAGCACTGTAAAATTTGTTTCTA
59.499
33.333
0.00
0.00
0.00
2.10
1766
1965
6.321181
TCTCCAGCACTGTAAAATTTGTTTCT
59.679
34.615
0.00
0.00
0.00
2.52
1767
1966
6.503524
TCTCCAGCACTGTAAAATTTGTTTC
58.496
36.000
0.00
0.00
0.00
2.78
1768
1967
6.461509
CCTCTCCAGCACTGTAAAATTTGTTT
60.462
38.462
0.00
0.00
0.00
2.83
1769
1968
5.010012
CCTCTCCAGCACTGTAAAATTTGTT
59.990
40.000
0.00
0.00
0.00
2.83
1770
1969
4.520492
CCTCTCCAGCACTGTAAAATTTGT
59.480
41.667
0.00
0.00
0.00
2.83
1771
1970
4.520492
ACCTCTCCAGCACTGTAAAATTTG
59.480
41.667
0.00
0.00
0.00
2.32
1772
1971
4.520492
CACCTCTCCAGCACTGTAAAATTT
59.480
41.667
0.00
0.00
0.00
1.82
1773
1972
4.074970
CACCTCTCCAGCACTGTAAAATT
58.925
43.478
0.00
0.00
0.00
1.82
1774
1973
3.073062
ACACCTCTCCAGCACTGTAAAAT
59.927
43.478
0.00
0.00
0.00
1.82
1775
1974
2.438021
ACACCTCTCCAGCACTGTAAAA
59.562
45.455
0.00
0.00
0.00
1.52
1776
1975
2.047061
ACACCTCTCCAGCACTGTAAA
58.953
47.619
0.00
0.00
0.00
2.01
1777
1976
1.717032
ACACCTCTCCAGCACTGTAA
58.283
50.000
0.00
0.00
0.00
2.41
1778
1977
1.717032
AACACCTCTCCAGCACTGTA
58.283
50.000
0.00
0.00
0.00
2.74
1779
1978
0.839946
AAACACCTCTCCAGCACTGT
59.160
50.000
0.00
0.00
0.00
3.55
1780
1979
1.202687
TCAAACACCTCTCCAGCACTG
60.203
52.381
0.00
0.00
0.00
3.66
1781
1980
1.071385
CTCAAACACCTCTCCAGCACT
59.929
52.381
0.00
0.00
0.00
4.40
1782
1981
1.517242
CTCAAACACCTCTCCAGCAC
58.483
55.000
0.00
0.00
0.00
4.40
1783
1982
0.250467
GCTCAAACACCTCTCCAGCA
60.250
55.000
0.00
0.00
0.00
4.41
1784
1983
0.957888
GGCTCAAACACCTCTCCAGC
60.958
60.000
0.00
0.00
0.00
4.85
1785
1984
0.689623
AGGCTCAAACACCTCTCCAG
59.310
55.000
0.00
0.00
0.00
3.86
1786
1985
0.397941
CAGGCTCAAACACCTCTCCA
59.602
55.000
0.00
0.00
32.56
3.86
1787
1986
0.398318
ACAGGCTCAAACACCTCTCC
59.602
55.000
0.00
0.00
32.56
3.71
1788
1987
2.262423
AACAGGCTCAAACACCTCTC
57.738
50.000
0.00
0.00
32.56
3.20
1789
1988
3.857157
TTAACAGGCTCAAACACCTCT
57.143
42.857
0.00
0.00
32.56
3.69
1790
1989
3.304726
GCTTTAACAGGCTCAAACACCTC
60.305
47.826
0.00
0.00
32.56
3.85
1791
1990
2.623416
GCTTTAACAGGCTCAAACACCT
59.377
45.455
0.00
0.00
36.45
4.00
1792
1991
2.288213
GGCTTTAACAGGCTCAAACACC
60.288
50.000
0.00
0.00
45.03
4.16
1793
1992
3.013276
GGCTTTAACAGGCTCAAACAC
57.987
47.619
0.00
0.00
45.03
3.32
1802
2001
2.838202
TCTACTGAGGGGCTTTAACAGG
59.162
50.000
0.00
0.00
33.57
4.00
1803
2002
4.553330
TTCTACTGAGGGGCTTTAACAG
57.447
45.455
0.00
0.00
35.14
3.16
1804
2003
4.382685
CGATTCTACTGAGGGGCTTTAACA
60.383
45.833
0.00
0.00
0.00
2.41
1805
2004
4.120589
CGATTCTACTGAGGGGCTTTAAC
58.879
47.826
0.00
0.00
0.00
2.01
1806
2005
3.431766
GCGATTCTACTGAGGGGCTTTAA
60.432
47.826
0.00
0.00
0.00
1.52
1807
2006
2.102588
GCGATTCTACTGAGGGGCTTTA
59.897
50.000
0.00
0.00
0.00
1.85
1808
2007
1.134371
GCGATTCTACTGAGGGGCTTT
60.134
52.381
0.00
0.00
0.00
3.51
1809
2008
0.466124
GCGATTCTACTGAGGGGCTT
59.534
55.000
0.00
0.00
0.00
4.35
1810
2009
1.403687
GGCGATTCTACTGAGGGGCT
61.404
60.000
0.00
0.00
0.00
5.19
1811
2010
1.069935
GGCGATTCTACTGAGGGGC
59.930
63.158
0.00
0.00
0.00
5.80
1812
2011
1.749033
GGGCGATTCTACTGAGGGG
59.251
63.158
0.00
0.00
0.00
4.79
1813
2012
0.760945
AGGGGCGATTCTACTGAGGG
60.761
60.000
0.00
0.00
0.00
4.30
1814
2013
0.390860
CAGGGGCGATTCTACTGAGG
59.609
60.000
0.00
0.00
0.00
3.86
1815
2014
0.249657
GCAGGGGCGATTCTACTGAG
60.250
60.000
0.00
0.00
0.00
3.35
1816
2015
1.686325
GGCAGGGGCGATTCTACTGA
61.686
60.000
0.00
0.00
42.47
3.41
1817
2016
1.227674
GGCAGGGGCGATTCTACTG
60.228
63.158
0.00
0.00
42.47
2.74
1818
2017
0.105658
TAGGCAGGGGCGATTCTACT
60.106
55.000
0.00
0.00
42.47
2.57
1819
2018
0.318762
CTAGGCAGGGGCGATTCTAC
59.681
60.000
0.00
0.00
42.47
2.59
1820
2019
0.832135
CCTAGGCAGGGGCGATTCTA
60.832
60.000
0.00
0.00
42.47
2.10
1821
2020
2.143419
CCTAGGCAGGGGCGATTCT
61.143
63.158
0.00
0.00
42.47
2.40
1822
2021
2.105806
CTCCTAGGCAGGGGCGATTC
62.106
65.000
2.96
0.00
42.87
2.52
1823
2022
2.040884
TCCTAGGCAGGGGCGATT
60.041
61.111
2.96
0.00
42.87
3.34
1824
2023
2.525381
CTCCTAGGCAGGGGCGAT
60.525
66.667
2.96
0.00
42.87
4.58
1829
2028
1.559682
TGCTTTTACTCCTAGGCAGGG
59.440
52.381
2.96
0.00
42.87
4.45
1830
2029
2.911484
CTGCTTTTACTCCTAGGCAGG
58.089
52.381
2.96
0.00
42.05
4.85
1832
2031
3.197116
GGTACTGCTTTTACTCCTAGGCA
59.803
47.826
2.96
0.00
0.00
4.75
1833
2032
3.737355
CGGTACTGCTTTTACTCCTAGGC
60.737
52.174
2.96
0.00
0.00
3.93
1834
2033
3.698040
TCGGTACTGCTTTTACTCCTAGG
59.302
47.826
0.82
0.82
0.00
3.02
1835
2034
4.978083
TCGGTACTGCTTTTACTCCTAG
57.022
45.455
0.00
0.00
0.00
3.02
1836
2035
4.441079
GCATCGGTACTGCTTTTACTCCTA
60.441
45.833
0.00
0.00
36.68
2.94
1837
2036
3.679083
GCATCGGTACTGCTTTTACTCCT
60.679
47.826
0.00
0.00
36.68
3.69
1838
2037
2.608090
GCATCGGTACTGCTTTTACTCC
59.392
50.000
0.00
0.00
36.68
3.85
1839
2038
3.927552
GCATCGGTACTGCTTTTACTC
57.072
47.619
0.00
0.00
36.68
2.59
1847
2046
3.234386
GTTCAAAAAGCATCGGTACTGC
58.766
45.455
0.00
0.00
39.97
4.40
1850
2049
2.095919
AGCGTTCAAAAAGCATCGGTAC
60.096
45.455
0.77
0.00
0.00
3.34
1860
2063
3.119673
TCTGAACTGCAAGCGTTCAAAAA
60.120
39.130
22.49
13.90
46.95
1.94
1861
2064
2.421775
TCTGAACTGCAAGCGTTCAAAA
59.578
40.909
22.49
15.47
46.95
2.44
1862
2065
2.013400
TCTGAACTGCAAGCGTTCAAA
58.987
42.857
22.49
13.80
46.95
2.69
1893
2096
1.804746
CGCCTGCACGTACCATAATCA
60.805
52.381
0.00
0.00
0.00
2.57
1906
2109
1.271325
TGATTTCTTTCTCCGCCTGCA
60.271
47.619
0.00
0.00
0.00
4.41
1907
2110
1.453155
TGATTTCTTTCTCCGCCTGC
58.547
50.000
0.00
0.00
0.00
4.85
1908
2111
3.012518
ACATGATTTCTTTCTCCGCCTG
58.987
45.455
0.00
0.00
0.00
4.85
1909
2112
3.356529
ACATGATTTCTTTCTCCGCCT
57.643
42.857
0.00
0.00
0.00
5.52
1910
2113
3.440173
TCAACATGATTTCTTTCTCCGCC
59.560
43.478
0.00
0.00
0.00
6.13
1972
2176
2.599578
ACGCTACACCCACTCCGT
60.600
61.111
0.00
0.00
0.00
4.69
1996
2200
1.509787
CGGTCACGTACGTACACCG
60.510
63.158
36.69
36.69
42.96
4.94
2035
2239
1.668151
GACCTGCACTCGGTTGGTC
60.668
63.158
3.57
3.57
40.05
4.02
2108
2322
4.697756
CCGGTCACATGTGCCCGT
62.698
66.667
37.37
0.00
0.00
5.28
2109
2323
4.697756
ACCGGTCACATGTGCCCG
62.698
66.667
35.06
35.06
0.00
6.13
2110
2324
3.055719
CACCGGTCACATGTGCCC
61.056
66.667
21.38
18.70
0.00
5.36
2111
2325
3.055719
CCACCGGTCACATGTGCC
61.056
66.667
21.38
21.85
0.00
5.01
2112
2326
3.055719
CCCACCGGTCACATGTGC
61.056
66.667
21.38
15.29
0.00
4.57
2192
2925
0.590732
CATCATTGCTTCGCCTTCGC
60.591
55.000
0.00
0.00
35.26
4.70
2193
2926
0.028505
CCATCATTGCTTCGCCTTCG
59.971
55.000
0.00
0.00
0.00
3.79
2194
2927
1.382522
TCCATCATTGCTTCGCCTTC
58.617
50.000
0.00
0.00
0.00
3.46
2195
2928
1.679680
CATCCATCATTGCTTCGCCTT
59.320
47.619
0.00
0.00
0.00
4.35
2196
2929
1.315690
CATCCATCATTGCTTCGCCT
58.684
50.000
0.00
0.00
0.00
5.52
2197
2930
0.313043
CCATCCATCATTGCTTCGCC
59.687
55.000
0.00
0.00
0.00
5.54
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.