Multiple sequence alignment - TraesCS4A01G185700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G185700 chr4A 100.000 2796 0 0 1 2796 465007929 465005134 0.000000e+00 5164
1 TraesCS4A01G185700 chr4D 90.342 1491 103 15 1314 2782 112159879 112161350 0.000000e+00 1917
2 TraesCS4A01G185700 chr4D 92.715 453 29 4 862 1310 112159480 112159932 0.000000e+00 651
3 TraesCS4A01G185700 chr4D 82.750 400 56 12 442 831 14434678 14435074 7.410000e-91 344
4 TraesCS4A01G185700 chr4D 89.080 174 13 2 265 437 112158230 112158398 7.850000e-51 211
5 TraesCS4A01G185700 chr4D 87.013 154 14 4 284 436 112159229 112159377 4.790000e-38 169
6 TraesCS4A01G185700 chr4B 93.043 805 48 4 888 1691 172766886 172767683 0.000000e+00 1170
7 TraesCS4A01G185700 chr4B 87.345 885 73 10 1822 2690 172767919 172768780 0.000000e+00 977
8 TraesCS4A01G185700 chr4B 94.355 124 5 2 265 387 172765613 172765735 3.680000e-44 189
9 TraesCS4A01G185700 chr4B 90.984 122 10 1 2675 2796 172770195 172770315 2.230000e-36 163
10 TraesCS4A01G185700 chr3D 83.627 397 53 10 442 829 458607655 458607262 2.050000e-96 363
11 TraesCS4A01G185700 chr3D 83.047 407 54 12 439 834 548731461 548731059 3.430000e-94 355
12 TraesCS4A01G185700 chr3D 83.420 386 53 9 454 831 301888165 301888547 5.730000e-92 348
13 TraesCS4A01G185700 chr7D 83.292 401 52 11 442 831 54198512 54198116 3.430000e-94 355
14 TraesCS4A01G185700 chr7D 82.921 404 58 8 441 834 16321361 16320959 1.230000e-93 353
15 TraesCS4A01G185700 chr2D 83.127 403 53 10 442 833 622932942 622932544 1.230000e-93 353
16 TraesCS4A01G185700 chr2A 82.843 408 51 14 438 838 455518842 455519237 5.730000e-92 348
17 TraesCS4A01G185700 chr3A 82.555 407 55 11 438 834 105709156 105708756 7.410000e-91 344


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G185700 chr4A 465005134 465007929 2795 True 5164.00 5164 100.00000 1 2796 1 chr4A.!!$R1 2795
1 TraesCS4A01G185700 chr4D 112158230 112161350 3120 False 737.00 1917 89.78750 265 2782 4 chr4D.!!$F2 2517
2 TraesCS4A01G185700 chr4B 172765613 172770315 4702 False 624.75 1170 91.43175 265 2796 4 chr4B.!!$F1 2531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 0.033366 ACGCCAATTTCAGCCCAAAC 59.967 50.0 0.00 0.0 0.0 2.93 F
148 149 0.034283 GGACTCCTAGGGACACGACT 60.034 60.0 9.46 0.0 0.0 4.18 F
151 152 0.034380 CTCCTAGGGACACGACTGGA 60.034 60.0 9.46 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1320 3236 0.591741 CGGTCGGTAGCATCGTCTTC 60.592 60.000 0.00 0.0 0.00 2.87 R
1688 3604 1.271102 TCATCGTCATCGTGGTTGTCA 59.729 47.619 0.00 0.0 38.33 3.58 R
1959 4025 1.411246 ACCACTCGGAATGCGCTATAA 59.589 47.619 9.73 0.0 35.59 0.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.481567 AGGATGGGAATCTGGCATGG 59.518 55.000 0.00 0.00 0.00 3.66
20 21 0.541296 GGATGGGAATCTGGCATGGG 60.541 60.000 0.00 0.00 0.00 4.00
21 22 0.186873 GATGGGAATCTGGCATGGGT 59.813 55.000 0.00 0.00 0.00 4.51
22 23 0.638292 ATGGGAATCTGGCATGGGTT 59.362 50.000 0.00 0.00 0.00 4.11
23 24 0.324552 TGGGAATCTGGCATGGGTTG 60.325 55.000 0.00 0.00 0.00 3.77
24 25 0.324645 GGGAATCTGGCATGGGTTGT 60.325 55.000 0.00 0.00 0.00 3.32
25 26 1.560505 GGAATCTGGCATGGGTTGTT 58.439 50.000 0.00 0.00 0.00 2.83
26 27 1.901833 GGAATCTGGCATGGGTTGTTT 59.098 47.619 0.00 0.00 0.00 2.83
27 28 2.302733 GGAATCTGGCATGGGTTGTTTT 59.697 45.455 0.00 0.00 0.00 2.43
28 29 3.328505 GAATCTGGCATGGGTTGTTTTG 58.671 45.455 0.00 0.00 0.00 2.44
29 30 1.047002 TCTGGCATGGGTTGTTTTGG 58.953 50.000 0.00 0.00 0.00 3.28
30 31 0.603439 CTGGCATGGGTTGTTTTGGC 60.603 55.000 0.00 0.00 35.41 4.52
31 32 1.667510 GGCATGGGTTGTTTTGGCG 60.668 57.895 0.00 0.00 0.00 5.69
32 33 2.316867 GCATGGGTTGTTTTGGCGC 61.317 57.895 0.00 0.00 0.00 6.53
33 34 1.667510 CATGGGTTGTTTTGGCGCC 60.668 57.895 22.73 22.73 0.00 6.53
34 35 2.136878 ATGGGTTGTTTTGGCGCCA 61.137 52.632 29.03 29.03 0.00 5.69
35 36 1.479368 ATGGGTTGTTTTGGCGCCAT 61.479 50.000 33.25 8.24 0.00 4.40
36 37 1.070615 GGGTTGTTTTGGCGCCATT 59.929 52.632 33.25 0.00 0.00 3.16
37 38 0.533978 GGGTTGTTTTGGCGCCATTT 60.534 50.000 33.25 0.00 0.00 2.32
38 39 1.304254 GGTTGTTTTGGCGCCATTTT 58.696 45.000 33.25 0.00 0.00 1.82
39 40 1.673400 GGTTGTTTTGGCGCCATTTTT 59.327 42.857 33.25 0.00 0.00 1.94
40 41 2.286713 GGTTGTTTTGGCGCCATTTTTC 60.287 45.455 33.25 18.73 0.00 2.29
41 42 2.611225 TGTTTTGGCGCCATTTTTCT 57.389 40.000 33.25 0.00 0.00 2.52
42 43 2.911484 TGTTTTGGCGCCATTTTTCTT 58.089 38.095 33.25 0.00 0.00 2.52
43 44 3.274288 TGTTTTGGCGCCATTTTTCTTT 58.726 36.364 33.25 0.00 0.00 2.52
44 45 3.311048 TGTTTTGGCGCCATTTTTCTTTC 59.689 39.130 33.25 13.19 0.00 2.62
45 46 2.162319 TTGGCGCCATTTTTCTTTCC 57.838 45.000 33.25 0.00 0.00 3.13
46 47 1.337118 TGGCGCCATTTTTCTTTCCT 58.663 45.000 29.03 0.00 0.00 3.36
47 48 1.272212 TGGCGCCATTTTTCTTTCCTC 59.728 47.619 29.03 0.00 0.00 3.71
48 49 1.404181 GGCGCCATTTTTCTTTCCTCC 60.404 52.381 24.80 0.00 0.00 4.30
49 50 1.732405 GCGCCATTTTTCTTTCCTCCG 60.732 52.381 0.00 0.00 0.00 4.63
50 51 1.135402 CGCCATTTTTCTTTCCTCCGG 60.135 52.381 0.00 0.00 0.00 5.14
51 52 1.404181 GCCATTTTTCTTTCCTCCGGC 60.404 52.381 0.00 0.00 0.00 6.13
52 53 1.135402 CCATTTTTCTTTCCTCCGGCG 60.135 52.381 0.00 0.00 0.00 6.46
53 54 0.526211 ATTTTTCTTTCCTCCGGCGC 59.474 50.000 0.00 0.00 0.00 6.53
54 55 1.520600 TTTTTCTTTCCTCCGGCGCC 61.521 55.000 19.07 19.07 0.00 6.53
55 56 3.912745 TTTCTTTCCTCCGGCGCCC 62.913 63.158 23.46 2.84 0.00 6.13
57 58 4.840005 CTTTCCTCCGGCGCCCTC 62.840 72.222 23.46 0.00 0.00 4.30
85 86 4.988598 CAGCGTGCTGGGTTCGGT 62.989 66.667 14.00 0.00 40.17 4.69
86 87 4.250305 AGCGTGCTGGGTTCGGTT 62.250 61.111 0.00 0.00 31.43 4.44
87 88 3.284449 GCGTGCTGGGTTCGGTTT 61.284 61.111 0.00 0.00 0.00 3.27
88 89 2.637025 CGTGCTGGGTTCGGTTTG 59.363 61.111 0.00 0.00 0.00 2.93
89 90 2.903547 CGTGCTGGGTTCGGTTTGG 61.904 63.158 0.00 0.00 0.00 3.28
90 91 2.203422 TGCTGGGTTCGGTTTGGG 60.203 61.111 0.00 0.00 0.00 4.12
91 92 2.203437 GCTGGGTTCGGTTTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
92 93 2.265904 GCTGGGTTCGGTTTGGGTC 61.266 63.158 0.00 0.00 0.00 4.46
93 94 1.602605 CTGGGTTCGGTTTGGGTCC 60.603 63.158 0.00 0.00 0.00 4.46
95 96 3.359523 GGTTCGGTTTGGGTCCGC 61.360 66.667 0.00 0.00 46.49 5.54
96 97 3.359523 GTTCGGTTTGGGTCCGCC 61.360 66.667 0.00 0.00 46.49 6.13
97 98 4.992511 TTCGGTTTGGGTCCGCCG 62.993 66.667 9.90 9.90 46.49 6.46
107 108 3.428282 GTCCGCCGACGCCAATTT 61.428 61.111 0.00 0.00 38.22 1.82
108 109 3.122323 TCCGCCGACGCCAATTTC 61.122 61.111 0.00 0.00 38.22 2.17
109 110 3.427425 CCGCCGACGCCAATTTCA 61.427 61.111 0.00 0.00 38.22 2.69
110 111 2.098298 CGCCGACGCCAATTTCAG 59.902 61.111 0.00 0.00 0.00 3.02
111 112 2.202479 GCCGACGCCAATTTCAGC 60.202 61.111 0.00 0.00 0.00 4.26
112 113 2.485122 CCGACGCCAATTTCAGCC 59.515 61.111 0.00 0.00 0.00 4.85
113 114 2.485122 CGACGCCAATTTCAGCCC 59.515 61.111 0.00 0.00 0.00 5.19
114 115 2.331893 CGACGCCAATTTCAGCCCA 61.332 57.895 0.00 0.00 0.00 5.36
115 116 1.861542 CGACGCCAATTTCAGCCCAA 61.862 55.000 0.00 0.00 0.00 4.12
116 117 0.316841 GACGCCAATTTCAGCCCAAA 59.683 50.000 0.00 0.00 0.00 3.28
117 118 0.033366 ACGCCAATTTCAGCCCAAAC 59.967 50.000 0.00 0.00 0.00 2.93
118 119 0.670239 CGCCAATTTCAGCCCAAACC 60.670 55.000 0.00 0.00 0.00 3.27
119 120 0.670239 GCCAATTTCAGCCCAAACCG 60.670 55.000 0.00 0.00 0.00 4.44
120 121 0.965439 CCAATTTCAGCCCAAACCGA 59.035 50.000 0.00 0.00 0.00 4.69
121 122 1.550072 CCAATTTCAGCCCAAACCGAT 59.450 47.619 0.00 0.00 0.00 4.18
122 123 2.609350 CAATTTCAGCCCAAACCGATG 58.391 47.619 0.00 0.00 0.00 3.84
123 124 2.214376 ATTTCAGCCCAAACCGATGA 57.786 45.000 0.00 0.00 0.00 2.92
124 125 1.988293 TTTCAGCCCAAACCGATGAA 58.012 45.000 0.00 0.00 0.00 2.57
125 126 1.988293 TTCAGCCCAAACCGATGAAA 58.012 45.000 0.00 0.00 0.00 2.69
126 127 2.214376 TCAGCCCAAACCGATGAAAT 57.786 45.000 0.00 0.00 0.00 2.17
127 128 2.524306 TCAGCCCAAACCGATGAAATT 58.476 42.857 0.00 0.00 0.00 1.82
128 129 2.896685 TCAGCCCAAACCGATGAAATTT 59.103 40.909 0.00 0.00 0.00 1.82
129 130 2.995258 CAGCCCAAACCGATGAAATTTG 59.005 45.455 0.00 0.00 33.90 2.32
135 136 4.485163 CAAACCGATGAAATTTGGACTCC 58.515 43.478 0.00 0.00 31.12 3.85
136 137 3.721087 ACCGATGAAATTTGGACTCCT 57.279 42.857 0.00 0.00 0.00 3.69
137 138 4.837093 ACCGATGAAATTTGGACTCCTA 57.163 40.909 0.00 0.00 0.00 2.94
138 139 4.770795 ACCGATGAAATTTGGACTCCTAG 58.229 43.478 0.00 0.00 0.00 3.02
139 140 4.130118 CCGATGAAATTTGGACTCCTAGG 58.870 47.826 0.82 0.82 0.00 3.02
140 141 4.130118 CGATGAAATTTGGACTCCTAGGG 58.870 47.826 9.46 2.03 0.00 3.53
141 142 4.141711 CGATGAAATTTGGACTCCTAGGGA 60.142 45.833 9.46 0.00 0.00 4.20
142 143 4.569719 TGAAATTTGGACTCCTAGGGAC 57.430 45.455 9.46 0.03 0.00 4.46
143 144 3.913799 TGAAATTTGGACTCCTAGGGACA 59.086 43.478 9.46 0.09 0.00 4.02
144 145 4.262617 GAAATTTGGACTCCTAGGGACAC 58.737 47.826 9.46 0.00 0.00 3.67
145 146 1.263356 TTTGGACTCCTAGGGACACG 58.737 55.000 9.46 0.00 0.00 4.49
146 147 0.406750 TTGGACTCCTAGGGACACGA 59.593 55.000 9.46 0.00 0.00 4.35
147 148 0.323178 TGGACTCCTAGGGACACGAC 60.323 60.000 9.46 0.00 0.00 4.34
148 149 0.034283 GGACTCCTAGGGACACGACT 60.034 60.000 9.46 0.00 0.00 4.18
149 150 1.096416 GACTCCTAGGGACACGACTG 58.904 60.000 9.46 0.00 0.00 3.51
150 151 0.323542 ACTCCTAGGGACACGACTGG 60.324 60.000 9.46 0.00 0.00 4.00
151 152 0.034380 CTCCTAGGGACACGACTGGA 60.034 60.000 9.46 0.00 0.00 3.86
152 153 0.406750 TCCTAGGGACACGACTGGAA 59.593 55.000 9.46 0.00 0.00 3.53
153 154 0.818296 CCTAGGGACACGACTGGAAG 59.182 60.000 0.00 0.00 42.29 3.46
199 200 4.702274 CCTTGGGGCCTGTTGGGG 62.702 72.222 0.84 0.00 35.12 4.96
200 201 4.702274 CTTGGGGCCTGTTGGGGG 62.702 72.222 0.84 0.00 35.12 5.40
223 224 2.592308 GGGGGTGTGGAGATGCTC 59.408 66.667 0.00 0.00 0.00 4.26
224 225 1.997874 GGGGGTGTGGAGATGCTCT 60.998 63.158 0.00 0.00 0.00 4.09
225 226 1.566298 GGGGGTGTGGAGATGCTCTT 61.566 60.000 0.00 0.00 0.00 2.85
226 227 1.204146 GGGGTGTGGAGATGCTCTTA 58.796 55.000 0.00 0.00 0.00 2.10
227 228 1.559682 GGGGTGTGGAGATGCTCTTAA 59.440 52.381 0.00 0.00 0.00 1.85
228 229 2.633488 GGGTGTGGAGATGCTCTTAAC 58.367 52.381 0.00 0.00 0.00 2.01
229 230 2.237392 GGGTGTGGAGATGCTCTTAACT 59.763 50.000 0.00 0.00 0.00 2.24
230 231 3.451178 GGGTGTGGAGATGCTCTTAACTA 59.549 47.826 0.00 0.00 0.00 2.24
231 232 4.434520 GGTGTGGAGATGCTCTTAACTAC 58.565 47.826 0.00 0.00 0.00 2.73
232 233 4.434520 GTGTGGAGATGCTCTTAACTACC 58.565 47.826 0.00 0.00 0.00 3.18
233 234 4.081642 GTGTGGAGATGCTCTTAACTACCA 60.082 45.833 0.00 0.00 0.00 3.25
234 235 4.160439 TGTGGAGATGCTCTTAACTACCAG 59.840 45.833 0.00 0.00 0.00 4.00
235 236 4.160626 GTGGAGATGCTCTTAACTACCAGT 59.839 45.833 0.00 0.00 0.00 4.00
236 237 4.777896 TGGAGATGCTCTTAACTACCAGTT 59.222 41.667 0.00 0.00 41.97 3.16
237 238 5.955959 TGGAGATGCTCTTAACTACCAGTTA 59.044 40.000 0.00 0.00 39.51 2.24
238 239 6.439375 TGGAGATGCTCTTAACTACCAGTTAA 59.561 38.462 10.26 10.26 45.41 2.01
239 240 7.038587 TGGAGATGCTCTTAACTACCAGTTAAA 60.039 37.037 11.48 0.00 46.41 1.52
240 241 7.822822 GGAGATGCTCTTAACTACCAGTTAAAA 59.177 37.037 11.48 0.10 46.41 1.52
241 242 8.549338 AGATGCTCTTAACTACCAGTTAAAAC 57.451 34.615 11.48 5.98 46.41 2.43
242 243 8.154856 AGATGCTCTTAACTACCAGTTAAAACA 58.845 33.333 11.48 10.07 46.41 2.83
243 244 8.685838 ATGCTCTTAACTACCAGTTAAAACAA 57.314 30.769 11.48 1.61 46.41 2.83
244 245 8.508883 TGCTCTTAACTACCAGTTAAAACAAA 57.491 30.769 11.48 0.00 46.41 2.83
245 246 8.400186 TGCTCTTAACTACCAGTTAAAACAAAC 58.600 33.333 11.48 2.06 46.41 2.93
246 247 8.618677 GCTCTTAACTACCAGTTAAAACAAACT 58.381 33.333 11.48 0.00 46.41 2.66
306 307 9.862585 CTTTTAAAGTGCATGGTTTTGATTTAC 57.137 29.630 0.00 0.00 0.00 2.01
364 365 4.654915 TCTGAACTTGCATGGATCAGAAA 58.345 39.130 25.05 12.71 42.44 2.52
371 372 7.507733 ACTTGCATGGATCAGAAATAGAATC 57.492 36.000 4.44 0.00 0.00 2.52
415 1461 7.306283 GCTCTTACATCGATGTTTGACATACTC 60.306 40.741 34.06 10.99 39.27 2.59
428 1474 2.733552 GACATACTCGCATGGCATGTAG 59.266 50.000 26.94 24.34 33.81 2.74
432 1478 1.143305 CTCGCATGGCATGTAGTAGC 58.857 55.000 26.94 11.82 0.00 3.58
433 1479 0.463620 TCGCATGGCATGTAGTAGCA 59.536 50.000 26.94 5.01 0.00 3.49
434 1480 1.070601 TCGCATGGCATGTAGTAGCAT 59.929 47.619 26.94 0.00 0.00 3.79
435 1481 1.875514 CGCATGGCATGTAGTAGCATT 59.124 47.619 26.94 0.00 0.00 3.56
436 1482 2.291465 CGCATGGCATGTAGTAGCATTT 59.709 45.455 26.94 0.00 0.00 2.32
437 1483 3.635331 GCATGGCATGTAGTAGCATTTG 58.365 45.455 26.94 0.30 0.00 2.32
438 1484 3.635331 CATGGCATGTAGTAGCATTTGC 58.365 45.455 19.32 0.00 42.49 3.68
450 1496 2.368655 GCATTTGCGGAAATCCAACT 57.631 45.000 12.36 0.00 35.14 3.16
451 1497 2.262211 GCATTTGCGGAAATCCAACTC 58.738 47.619 12.36 0.00 35.14 3.01
452 1498 2.518949 CATTTGCGGAAATCCAACTCG 58.481 47.619 12.36 0.00 35.14 4.18
453 1499 0.878416 TTTGCGGAAATCCAACTCGG 59.122 50.000 0.00 0.00 35.14 4.63
454 1500 1.582610 TTGCGGAAATCCAACTCGGC 61.583 55.000 0.00 0.00 38.13 5.54
455 1501 2.038269 GCGGAAATCCAACTCGGCA 61.038 57.895 0.00 0.00 37.71 5.69
456 1502 1.794222 CGGAAATCCAACTCGGCAC 59.206 57.895 0.00 0.00 35.14 5.01
457 1503 0.953471 CGGAAATCCAACTCGGCACA 60.953 55.000 0.00 0.00 35.14 4.57
458 1504 0.804989 GGAAATCCAACTCGGCACAG 59.195 55.000 0.00 0.00 35.64 3.66
459 1505 0.804989 GAAATCCAACTCGGCACAGG 59.195 55.000 0.00 0.00 33.14 4.00
460 1506 1.244019 AAATCCAACTCGGCACAGGC 61.244 55.000 0.00 0.00 40.13 4.85
461 1507 2.129555 AATCCAACTCGGCACAGGCT 62.130 55.000 0.00 0.00 40.87 4.58
462 1508 1.264749 ATCCAACTCGGCACAGGCTA 61.265 55.000 0.00 0.00 40.87 3.93
463 1509 1.003839 CCAACTCGGCACAGGCTAA 60.004 57.895 0.00 0.00 40.87 3.09
464 1510 0.392998 CCAACTCGGCACAGGCTAAT 60.393 55.000 0.00 0.00 40.87 1.73
465 1511 1.009829 CAACTCGGCACAGGCTAATC 58.990 55.000 0.00 0.00 40.87 1.75
466 1512 0.905357 AACTCGGCACAGGCTAATCT 59.095 50.000 0.00 0.00 40.87 2.40
467 1513 0.176680 ACTCGGCACAGGCTAATCTG 59.823 55.000 0.00 0.00 40.87 2.90
468 1514 1.153369 TCGGCACAGGCTAATCTGC 60.153 57.895 0.00 0.00 40.87 4.26
469 1515 1.153289 CGGCACAGGCTAATCTGCT 60.153 57.895 0.00 0.00 40.87 4.24
470 1516 1.156645 CGGCACAGGCTAATCTGCTC 61.157 60.000 0.00 0.00 40.87 4.26
471 1517 0.817229 GGCACAGGCTAATCTGCTCC 60.817 60.000 0.00 0.00 40.87 4.70
472 1518 0.817229 GCACAGGCTAATCTGCTCCC 60.817 60.000 0.00 0.00 38.26 4.30
473 1519 0.543277 CACAGGCTAATCTGCTCCCA 59.457 55.000 0.00 0.00 38.26 4.37
474 1520 1.142465 CACAGGCTAATCTGCTCCCAT 59.858 52.381 0.00 0.00 38.26 4.00
475 1521 1.849039 ACAGGCTAATCTGCTCCCATT 59.151 47.619 0.00 0.00 38.26 3.16
476 1522 2.158696 ACAGGCTAATCTGCTCCCATTC 60.159 50.000 0.00 0.00 38.26 2.67
477 1523 2.130193 AGGCTAATCTGCTCCCATTCA 58.870 47.619 0.00 0.00 0.00 2.57
478 1524 2.106166 AGGCTAATCTGCTCCCATTCAG 59.894 50.000 0.00 0.00 0.00 3.02
479 1525 2.502295 GCTAATCTGCTCCCATTCAGG 58.498 52.381 0.00 0.00 37.03 3.86
480 1526 2.105477 GCTAATCTGCTCCCATTCAGGA 59.895 50.000 0.00 0.00 41.22 3.86
481 1527 3.434167 GCTAATCTGCTCCCATTCAGGAA 60.434 47.826 0.00 0.00 41.22 3.36
482 1528 3.744940 AATCTGCTCCCATTCAGGAAA 57.255 42.857 0.00 0.00 41.22 3.13
483 1529 3.744940 ATCTGCTCCCATTCAGGAAAA 57.255 42.857 0.00 0.00 41.22 2.29
484 1530 3.744940 TCTGCTCCCATTCAGGAAAAT 57.255 42.857 0.00 0.00 41.22 1.82
485 1531 4.051661 TCTGCTCCCATTCAGGAAAATT 57.948 40.909 0.00 0.00 41.22 1.82
486 1532 4.419282 TCTGCTCCCATTCAGGAAAATTT 58.581 39.130 0.00 0.00 41.22 1.82
487 1533 4.840115 TCTGCTCCCATTCAGGAAAATTTT 59.160 37.500 2.28 2.28 41.22 1.82
488 1534 5.307716 TCTGCTCCCATTCAGGAAAATTTTT 59.692 36.000 4.63 0.00 41.22 1.94
550 1596 8.839947 TTTTGTGATAGATAATTTGATGCGTG 57.160 30.769 0.00 0.00 0.00 5.34
551 1597 7.784633 TTGTGATAGATAATTTGATGCGTGA 57.215 32.000 0.00 0.00 0.00 4.35
553 1599 7.209475 TGTGATAGATAATTTGATGCGTGAGA 58.791 34.615 0.00 0.00 0.00 3.27
554 1600 7.874528 TGTGATAGATAATTTGATGCGTGAGAT 59.125 33.333 0.00 0.00 0.00 2.75
555 1601 8.379161 GTGATAGATAATTTGATGCGTGAGATC 58.621 37.037 0.00 0.00 0.00 2.75
556 1602 7.547019 TGATAGATAATTTGATGCGTGAGATCC 59.453 37.037 0.00 0.00 0.00 3.36
557 1603 4.687948 AGATAATTTGATGCGTGAGATCCG 59.312 41.667 0.00 0.00 0.00 4.18
573 1706 5.106555 TGAGATCCGCTTCAAATTTCAACTC 60.107 40.000 0.00 0.00 0.00 3.01
579 1712 5.107375 CCGCTTCAAATTTCAACTCATTTGG 60.107 40.000 5.11 0.00 39.76 3.28
581 1714 6.366877 CGCTTCAAATTTCAACTCATTTGGAT 59.633 34.615 5.11 0.00 39.76 3.41
582 1715 7.541783 CGCTTCAAATTTCAACTCATTTGGATA 59.458 33.333 5.11 0.00 39.76 2.59
600 1733 9.976776 ATTTGGATATCTAAGTATCTCTCGGTA 57.023 33.333 2.05 0.00 32.78 4.02
601 1734 9.803507 TTTGGATATCTAAGTATCTCTCGGTAA 57.196 33.333 2.05 0.00 32.78 2.85
603 1736 9.803507 TGGATATCTAAGTATCTCTCGGTAAAA 57.196 33.333 2.05 0.00 32.78 1.52
627 2459 9.472361 AAAAAGACAAATCTGATCAGAACAATG 57.528 29.630 28.40 23.31 41.36 2.82
628 2460 6.192234 AGACAAATCTGATCAGAACAATGC 57.808 37.500 28.40 15.88 41.36 3.56
629 2461 5.708697 AGACAAATCTGATCAGAACAATGCA 59.291 36.000 28.40 4.17 41.36 3.96
635 2467 5.005094 TCTGATCAGAACAATGCATGAACA 58.995 37.500 23.17 0.00 33.91 3.18
636 2468 5.123344 TCTGATCAGAACAATGCATGAACAG 59.877 40.000 23.17 13.76 41.37 3.16
637 2469 4.763279 TGATCAGAACAATGCATGAACAGT 59.237 37.500 0.00 0.00 0.00 3.55
638 2470 5.939296 TGATCAGAACAATGCATGAACAGTA 59.061 36.000 0.00 0.00 0.00 2.74
640 2472 6.631971 TCAGAACAATGCATGAACAGTAAA 57.368 33.333 0.00 0.00 0.00 2.01
641 2473 6.437928 TCAGAACAATGCATGAACAGTAAAC 58.562 36.000 0.00 0.00 0.00 2.01
642 2474 6.262944 TCAGAACAATGCATGAACAGTAAACT 59.737 34.615 0.00 0.00 0.00 2.66
643 2475 6.919662 CAGAACAATGCATGAACAGTAAACTT 59.080 34.615 0.00 0.00 0.00 2.66
645 2477 7.981225 AGAACAATGCATGAACAGTAAACTTTT 59.019 29.630 0.00 0.00 0.00 2.27
646 2478 8.491331 AACAATGCATGAACAGTAAACTTTTT 57.509 26.923 0.00 0.00 0.00 1.94
668 2500 7.654022 TTTTACAGACCCTGAATTTGTCTTT 57.346 32.000 0.45 0.00 37.25 2.52
669 2501 7.654022 TTTACAGACCCTGAATTTGTCTTTT 57.346 32.000 0.45 0.00 37.25 2.27
670 2502 7.654022 TTACAGACCCTGAATTTGTCTTTTT 57.346 32.000 0.45 0.00 37.25 1.94
688 2520 3.441496 TTTTGCTGAAAGTTGCTCAGG 57.559 42.857 6.68 0.00 40.62 3.86
690 2522 1.597742 TGCTGAAAGTTGCTCAGGTC 58.402 50.000 6.68 0.00 40.62 3.85
691 2523 1.141657 TGCTGAAAGTTGCTCAGGTCT 59.858 47.619 6.68 0.00 40.62 3.85
692 2524 1.803555 GCTGAAAGTTGCTCAGGTCTC 59.196 52.381 6.68 0.00 40.62 3.36
693 2525 2.421619 CTGAAAGTTGCTCAGGTCTCC 58.578 52.381 0.00 0.00 37.29 3.71
695 2527 2.172505 TGAAAGTTGCTCAGGTCTCCAA 59.827 45.455 0.00 0.00 0.00 3.53
697 2529 3.515602 AAGTTGCTCAGGTCTCCAAAT 57.484 42.857 0.00 0.00 0.00 2.32
698 2530 2.787994 AGTTGCTCAGGTCTCCAAATG 58.212 47.619 0.00 0.00 0.00 2.32
699 2531 2.373169 AGTTGCTCAGGTCTCCAAATGA 59.627 45.455 0.00 0.00 0.00 2.57
700 2532 2.746362 GTTGCTCAGGTCTCCAAATGAG 59.254 50.000 0.00 0.00 41.68 2.90
702 2534 2.373169 TGCTCAGGTCTCCAAATGAGTT 59.627 45.455 3.30 0.00 42.12 3.01
704 2536 3.557898 GCTCAGGTCTCCAAATGAGTTGA 60.558 47.826 0.00 0.00 42.12 3.18
707 2539 5.634118 TCAGGTCTCCAAATGAGTTGAATT 58.366 37.500 0.00 0.00 42.12 2.17
709 2541 6.550854 TCAGGTCTCCAAATGAGTTGAATTTT 59.449 34.615 0.00 0.00 42.12 1.82
711 2543 6.550854 AGGTCTCCAAATGAGTTGAATTTTGA 59.449 34.615 0.00 0.00 42.12 2.69
714 2546 6.925165 TCTCCAAATGAGTTGAATTTTGAAGC 59.075 34.615 0.00 0.00 42.12 3.86
716 2548 6.702723 TCCAAATGAGTTGAATTTTGAAGCAG 59.297 34.615 0.00 0.00 39.87 4.24
717 2549 6.702723 CCAAATGAGTTGAATTTTGAAGCAGA 59.297 34.615 0.00 0.00 39.87 4.26
718 2550 7.306983 CCAAATGAGTTGAATTTTGAAGCAGAC 60.307 37.037 0.00 0.00 39.87 3.51
719 2551 5.186996 TGAGTTGAATTTTGAAGCAGACC 57.813 39.130 0.00 0.00 0.00 3.85
720 2552 4.037923 TGAGTTGAATTTTGAAGCAGACCC 59.962 41.667 0.00 0.00 0.00 4.46
721 2553 3.321968 AGTTGAATTTTGAAGCAGACCCC 59.678 43.478 0.00 0.00 0.00 4.95
722 2554 2.956132 TGAATTTTGAAGCAGACCCCA 58.044 42.857 0.00 0.00 0.00 4.96
723 2555 2.627699 TGAATTTTGAAGCAGACCCCAC 59.372 45.455 0.00 0.00 0.00 4.61
724 2556 1.247567 ATTTTGAAGCAGACCCCACG 58.752 50.000 0.00 0.00 0.00 4.94
725 2557 1.452145 TTTTGAAGCAGACCCCACGC 61.452 55.000 0.00 0.00 0.00 5.34
726 2558 2.616797 TTTGAAGCAGACCCCACGCA 62.617 55.000 0.00 0.00 0.00 5.24
727 2559 2.045926 GAAGCAGACCCCACGCAT 60.046 61.111 0.00 0.00 0.00 4.73
728 2560 2.045926 AAGCAGACCCCACGCATC 60.046 61.111 0.00 0.00 0.00 3.91
729 2561 2.803155 GAAGCAGACCCCACGCATCA 62.803 60.000 0.00 0.00 0.00 3.07
730 2562 2.359850 GCAGACCCCACGCATCAA 60.360 61.111 0.00 0.00 0.00 2.57
731 2563 1.971167 GCAGACCCCACGCATCAAA 60.971 57.895 0.00 0.00 0.00 2.69
732 2564 1.315257 GCAGACCCCACGCATCAAAT 61.315 55.000 0.00 0.00 0.00 2.32
733 2565 1.176527 CAGACCCCACGCATCAAATT 58.823 50.000 0.00 0.00 0.00 1.82
734 2566 2.364632 CAGACCCCACGCATCAAATTA 58.635 47.619 0.00 0.00 0.00 1.40
735 2567 2.951642 CAGACCCCACGCATCAAATTAT 59.048 45.455 0.00 0.00 0.00 1.28
736 2568 3.003689 CAGACCCCACGCATCAAATTATC 59.996 47.826 0.00 0.00 0.00 1.75
737 2569 3.117888 AGACCCCACGCATCAAATTATCT 60.118 43.478 0.00 0.00 0.00 1.98
738 2570 4.102524 AGACCCCACGCATCAAATTATCTA 59.897 41.667 0.00 0.00 0.00 1.98
739 2571 4.134563 ACCCCACGCATCAAATTATCTAC 58.865 43.478 0.00 0.00 0.00 2.59
740 2572 3.502211 CCCCACGCATCAAATTATCTACC 59.498 47.826 0.00 0.00 0.00 3.18
741 2573 4.133820 CCCACGCATCAAATTATCTACCA 58.866 43.478 0.00 0.00 0.00 3.25
742 2574 4.024048 CCCACGCATCAAATTATCTACCAC 60.024 45.833 0.00 0.00 0.00 4.16
743 2575 4.574421 CCACGCATCAAATTATCTACCACA 59.426 41.667 0.00 0.00 0.00 4.17
744 2576 5.501715 CACGCATCAAATTATCTACCACAC 58.498 41.667 0.00 0.00 0.00 3.82
745 2577 5.064579 CACGCATCAAATTATCTACCACACA 59.935 40.000 0.00 0.00 0.00 3.72
746 2578 5.645929 ACGCATCAAATTATCTACCACACAA 59.354 36.000 0.00 0.00 0.00 3.33
747 2579 6.150307 ACGCATCAAATTATCTACCACACAAA 59.850 34.615 0.00 0.00 0.00 2.83
748 2580 7.148086 ACGCATCAAATTATCTACCACACAAAT 60.148 33.333 0.00 0.00 0.00 2.32
749 2581 8.341903 CGCATCAAATTATCTACCACACAAATA 58.658 33.333 0.00 0.00 0.00 1.40
801 2633 9.010366 GTATTTGTTATGATTCTTTTTCCGAGC 57.990 33.333 0.00 0.00 0.00 5.03
802 2634 5.216566 TGTTATGATTCTTTTTCCGAGCG 57.783 39.130 0.00 0.00 0.00 5.03
803 2635 2.832672 ATGATTCTTTTTCCGAGCGC 57.167 45.000 0.00 0.00 0.00 5.92
804 2636 0.442310 TGATTCTTTTTCCGAGCGCG 59.558 50.000 0.00 0.00 37.24 6.86
815 2647 4.819761 GAGCGCGGGTGCAGATGA 62.820 66.667 8.83 0.00 42.97 2.92
816 2648 4.827087 AGCGCGGGTGCAGATGAG 62.827 66.667 8.83 0.00 42.97 2.90
818 2650 2.887568 CGCGGGTGCAGATGAGTC 60.888 66.667 0.00 0.00 42.97 3.36
819 2651 2.512515 GCGGGTGCAGATGAGTCC 60.513 66.667 0.00 0.00 42.15 3.85
820 2652 2.202797 CGGGTGCAGATGAGTCCG 60.203 66.667 0.00 0.00 0.00 4.79
821 2653 2.187946 GGGTGCAGATGAGTCCGG 59.812 66.667 0.00 0.00 0.00 5.14
822 2654 2.359169 GGGTGCAGATGAGTCCGGA 61.359 63.158 0.00 0.00 0.00 5.14
823 2655 1.142748 GGTGCAGATGAGTCCGGAG 59.857 63.158 3.06 0.00 0.00 4.63
851 2683 3.181486 ACTCCACGTAGCATGACATACTG 60.181 47.826 0.00 0.00 0.00 2.74
853 2685 3.949113 TCCACGTAGCATGACATACTGTA 59.051 43.478 0.00 0.00 0.00 2.74
854 2686 4.399934 TCCACGTAGCATGACATACTGTAA 59.600 41.667 0.00 0.00 0.00 2.41
855 2687 5.068591 TCCACGTAGCATGACATACTGTAAT 59.931 40.000 0.00 0.00 0.00 1.89
856 2688 6.263617 TCCACGTAGCATGACATACTGTAATA 59.736 38.462 0.00 0.00 0.00 0.98
858 2690 6.915843 CACGTAGCATGACATACTGTAATACA 59.084 38.462 0.00 0.00 0.00 2.29
876 2787 0.674534 CAGTACGTAGAGGGGATGCC 59.325 60.000 0.00 0.00 0.00 4.40
975 2890 2.297698 TCCAAGTCCGAACCAGAGTA 57.702 50.000 0.00 0.00 0.00 2.59
1059 2974 0.171903 ATCACCGTACGTAGGCACAC 59.828 55.000 15.21 0.00 0.00 3.82
1060 2975 1.171549 TCACCGTACGTAGGCACACA 61.172 55.000 15.21 0.00 0.00 3.72
1080 2995 4.065789 ACATTTTCTTCCTTCGTCCACTC 58.934 43.478 0.00 0.00 0.00 3.51
1095 3010 2.504244 CTCCCAGTTCGTCGCGAC 60.504 66.667 28.96 28.96 34.89 5.19
1157 3073 1.597027 CCACGACAACGAGGCCTTT 60.597 57.895 6.77 0.00 42.39 3.11
1247 3163 2.718789 CGCGAACTTGTTTCTGATGACG 60.719 50.000 0.00 0.00 31.20 4.35
1258 3174 4.340894 TTCTGATGACGCAAATTACTGC 57.659 40.909 0.00 0.00 39.04 4.40
1271 3187 2.882927 TTACTGCGTATGAAGGCGAT 57.117 45.000 0.00 0.00 39.39 4.58
1275 3191 1.665679 CTGCGTATGAAGGCGATGTTT 59.334 47.619 0.00 0.00 39.39 2.83
1278 3194 1.257936 CGTATGAAGGCGATGTTTCCG 59.742 52.381 0.00 0.00 0.00 4.30
1294 3210 2.812609 CGACGACGACGAGAGGGA 60.813 66.667 15.32 0.00 42.66 4.20
1302 3218 1.674980 GACGAGAGGGACGGTGACT 60.675 63.158 0.00 0.00 34.93 3.41
1320 3236 2.201732 ACTTCGGCGCTATTGTGTATG 58.798 47.619 7.64 0.00 0.00 2.39
1321 3237 2.159156 ACTTCGGCGCTATTGTGTATGA 60.159 45.455 7.64 0.00 0.00 2.15
1322 3238 2.588027 TCGGCGCTATTGTGTATGAA 57.412 45.000 7.64 0.00 0.00 2.57
1325 3241 2.218759 CGGCGCTATTGTGTATGAAGAC 59.781 50.000 7.64 0.00 0.00 3.01
1330 3246 4.375405 CGCTATTGTGTATGAAGACGATGC 60.375 45.833 0.00 0.00 0.00 3.91
1338 3254 0.454600 TGAAGACGATGCTACCGACC 59.545 55.000 0.00 0.00 0.00 4.79
1339 3255 0.591741 GAAGACGATGCTACCGACCG 60.592 60.000 0.00 0.00 0.00 4.79
1343 3259 2.654404 GATGCTACCGACCGCGAC 60.654 66.667 8.23 0.00 40.82 5.19
1434 3350 1.909287 GGGGATACGAGGGAGGAGC 60.909 68.421 0.00 0.00 37.60 4.70
1490 3406 0.321653 ACGACATCAGGAAGTTGCCC 60.322 55.000 0.00 0.00 0.00 5.36
1670 3586 2.269241 GGCCCTGCTGGTACTGAC 59.731 66.667 9.00 0.00 36.04 3.51
1671 3587 2.125512 GCCCTGCTGGTACTGACG 60.126 66.667 9.00 0.00 36.04 4.35
1672 3588 2.646175 GCCCTGCTGGTACTGACGA 61.646 63.158 9.00 0.00 36.04 4.20
1673 3589 1.215647 CCCTGCTGGTACTGACGAC 59.784 63.158 9.00 0.00 0.00 4.34
1674 3590 1.154016 CCTGCTGGTACTGACGACG 60.154 63.158 0.51 0.00 0.00 5.12
1675 3591 1.154016 CTGCTGGTACTGACGACGG 60.154 63.158 0.00 0.00 0.00 4.79
1676 3592 2.506438 GCTGGTACTGACGACGGC 60.506 66.667 0.00 0.00 0.00 5.68
1709 3625 2.288518 TGACAACCACGATGACGATGAA 60.289 45.455 0.00 0.00 42.66 2.57
1914 3979 9.434420 CATAAATGTTTTGCAGGAATCCTTTAA 57.566 29.630 0.00 0.00 0.00 1.52
1959 4025 5.007528 GCAAACTTTGGTGCATACAAATTGT 59.992 36.000 21.31 3.43 40.58 2.71
2057 4123 8.553153 TGGAGTTATGGACCAAATAAGACAATA 58.447 33.333 0.00 0.00 0.00 1.90
2064 4130 8.877864 TGGACCAAATAAGACAATAAGACAAT 57.122 30.769 0.00 0.00 0.00 2.71
2139 4208 5.183228 AGTGGAAATAACAGGTGATTACGG 58.817 41.667 0.00 0.00 0.00 4.02
2140 4209 4.939439 GTGGAAATAACAGGTGATTACGGT 59.061 41.667 0.00 0.00 0.00 4.83
2189 4258 2.294074 GATTAGCGGGTGCACCATTAA 58.706 47.619 35.78 27.17 46.23 1.40
2201 4270 4.386652 GTGCACCATTAACAGCAAAATCAG 59.613 41.667 5.22 0.00 38.91 2.90
2243 4312 8.397148 TGTATGTACAACGATCTTATAACGACA 58.603 33.333 0.00 0.00 32.40 4.35
2262 4331 4.266976 CGACATCGTACACCTACCAAATTC 59.733 45.833 0.00 0.00 34.11 2.17
2270 4339 4.457466 ACACCTACCAAATTCGACACTTT 58.543 39.130 0.00 0.00 0.00 2.66
2312 4381 1.460504 TCGTCTCAACCTAGCGTGAT 58.539 50.000 0.00 0.00 0.00 3.06
2337 4406 7.724287 TCTAGTACTAAGCTAGAGAATCGTCA 58.276 38.462 3.76 0.00 42.67 4.35
2375 4444 2.300437 GGGCCCAAGTCATACTAGCTAG 59.700 54.545 19.95 19.44 0.00 3.42
2397 4467 5.437060 AGACTCTTTGGCACTTCTACAAAA 58.563 37.500 0.00 0.00 34.13 2.44
2400 4470 7.068716 AGACTCTTTGGCACTTCTACAAAATTT 59.931 33.333 0.00 0.00 34.13 1.82
2419 4489 8.934825 CAAAATTTTCTTTCTTGAAGTTGGTCA 58.065 29.630 0.00 0.00 36.70 4.02
2521 4592 1.079503 GTCTTGACCCTTGATGTCGC 58.920 55.000 0.00 0.00 35.46 5.19
2571 4642 2.041081 ACAAATGGCCAAGGCTACACTA 59.959 45.455 10.96 0.00 41.60 2.74
2590 4661 5.202004 CACTAGAGATGGTAGGTGTAAGGT 58.798 45.833 0.00 0.00 0.00 3.50
2646 4718 1.044611 GTGCTAGGAGAGGGGATGAC 58.955 60.000 0.00 0.00 0.00 3.06
2719 6224 6.534634 CCTTTTCTTCTTGGACTTCCTTCTA 58.465 40.000 0.00 0.00 36.82 2.10
2755 6260 7.455058 TGCCTTTAACTACTCCTTTGACATTA 58.545 34.615 0.00 0.00 0.00 1.90
2782 6288 7.977293 TCTTTTTATCGTTATTCTCCATCGACA 59.023 33.333 0.00 0.00 33.55 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.481567 CCATGCCAGATTCCCATCCT 59.518 55.000 0.00 0.00 0.00 3.24
1 2 0.541296 CCCATGCCAGATTCCCATCC 60.541 60.000 0.00 0.00 0.00 3.51
2 3 0.186873 ACCCATGCCAGATTCCCATC 59.813 55.000 0.00 0.00 0.00 3.51
3 4 0.638292 AACCCATGCCAGATTCCCAT 59.362 50.000 0.00 0.00 0.00 4.00
4 5 0.324552 CAACCCATGCCAGATTCCCA 60.325 55.000 0.00 0.00 0.00 4.37
5 6 0.324645 ACAACCCATGCCAGATTCCC 60.325 55.000 0.00 0.00 0.00 3.97
6 7 1.560505 AACAACCCATGCCAGATTCC 58.439 50.000 0.00 0.00 0.00 3.01
7 8 3.328505 CAAAACAACCCATGCCAGATTC 58.671 45.455 0.00 0.00 0.00 2.52
8 9 2.038820 CCAAAACAACCCATGCCAGATT 59.961 45.455 0.00 0.00 0.00 2.40
9 10 1.624813 CCAAAACAACCCATGCCAGAT 59.375 47.619 0.00 0.00 0.00 2.90
10 11 1.047002 CCAAAACAACCCATGCCAGA 58.953 50.000 0.00 0.00 0.00 3.86
11 12 0.603439 GCCAAAACAACCCATGCCAG 60.603 55.000 0.00 0.00 0.00 4.85
12 13 1.449353 GCCAAAACAACCCATGCCA 59.551 52.632 0.00 0.00 0.00 4.92
13 14 1.667510 CGCCAAAACAACCCATGCC 60.668 57.895 0.00 0.00 0.00 4.40
14 15 2.316867 GCGCCAAAACAACCCATGC 61.317 57.895 0.00 0.00 0.00 4.06
15 16 1.667510 GGCGCCAAAACAACCCATG 60.668 57.895 24.80 0.00 0.00 3.66
16 17 1.479368 ATGGCGCCAAAACAACCCAT 61.479 50.000 36.33 10.11 0.00 4.00
17 18 1.690219 AATGGCGCCAAAACAACCCA 61.690 50.000 36.33 5.54 0.00 4.51
18 19 0.533978 AAATGGCGCCAAAACAACCC 60.534 50.000 36.33 0.00 0.00 4.11
19 20 1.304254 AAAATGGCGCCAAAACAACC 58.696 45.000 36.33 0.00 0.00 3.77
20 21 2.611751 AGAAAAATGGCGCCAAAACAAC 59.388 40.909 36.33 21.94 0.00 3.32
21 22 2.911484 AGAAAAATGGCGCCAAAACAA 58.089 38.095 36.33 9.29 0.00 2.83
22 23 2.611225 AGAAAAATGGCGCCAAAACA 57.389 40.000 36.33 10.23 0.00 2.83
23 24 3.303725 GGAAAGAAAAATGGCGCCAAAAC 60.304 43.478 36.33 21.75 0.00 2.43
24 25 2.875317 GGAAAGAAAAATGGCGCCAAAA 59.125 40.909 36.33 11.20 0.00 2.44
25 26 2.103941 AGGAAAGAAAAATGGCGCCAAA 59.896 40.909 36.33 12.16 0.00 3.28
26 27 1.691434 AGGAAAGAAAAATGGCGCCAA 59.309 42.857 36.33 17.74 0.00 4.52
27 28 1.272212 GAGGAAAGAAAAATGGCGCCA 59.728 47.619 34.80 34.80 0.00 5.69
28 29 1.404181 GGAGGAAAGAAAAATGGCGCC 60.404 52.381 22.73 22.73 0.00 6.53
29 30 1.732405 CGGAGGAAAGAAAAATGGCGC 60.732 52.381 0.00 0.00 0.00 6.53
30 31 2.262572 CGGAGGAAAGAAAAATGGCG 57.737 50.000 0.00 0.00 0.00 5.69
68 69 4.988598 ACCGAACCCAGCACGCTG 62.989 66.667 12.17 12.17 43.26 5.18
69 70 3.767630 AAACCGAACCCAGCACGCT 62.768 57.895 0.00 0.00 0.00 5.07
70 71 3.284449 AAACCGAACCCAGCACGC 61.284 61.111 0.00 0.00 0.00 5.34
71 72 2.637025 CAAACCGAACCCAGCACG 59.363 61.111 0.00 0.00 0.00 5.34
72 73 2.561037 CCCAAACCGAACCCAGCAC 61.561 63.158 0.00 0.00 0.00 4.40
73 74 2.203422 CCCAAACCGAACCCAGCA 60.203 61.111 0.00 0.00 0.00 4.41
74 75 2.203437 ACCCAAACCGAACCCAGC 60.203 61.111 0.00 0.00 0.00 4.85
75 76 1.602605 GGACCCAAACCGAACCCAG 60.603 63.158 0.00 0.00 0.00 4.45
76 77 2.516909 GGACCCAAACCGAACCCA 59.483 61.111 0.00 0.00 0.00 4.51
90 91 3.376914 GAAATTGGCGTCGGCGGAC 62.377 63.158 13.05 14.05 41.24 4.79
91 92 3.122323 GAAATTGGCGTCGGCGGA 61.122 61.111 13.05 5.72 41.24 5.54
92 93 3.381169 CTGAAATTGGCGTCGGCGG 62.381 63.158 13.05 0.00 41.24 6.13
93 94 2.098298 CTGAAATTGGCGTCGGCG 59.902 61.111 14.58 4.29 41.24 6.46
94 95 2.202479 GCTGAAATTGGCGTCGGC 60.202 61.111 12.58 12.58 38.87 5.54
95 96 2.485122 GGCTGAAATTGGCGTCGG 59.515 61.111 0.00 0.00 0.00 4.79
96 97 1.861542 TTGGGCTGAAATTGGCGTCG 61.862 55.000 0.00 0.00 0.00 5.12
97 98 0.316841 TTTGGGCTGAAATTGGCGTC 59.683 50.000 0.00 0.00 0.00 5.19
98 99 0.033366 GTTTGGGCTGAAATTGGCGT 59.967 50.000 0.00 0.00 0.00 5.68
99 100 0.670239 GGTTTGGGCTGAAATTGGCG 60.670 55.000 0.00 0.00 0.00 5.69
100 101 0.670239 CGGTTTGGGCTGAAATTGGC 60.670 55.000 0.00 0.00 0.00 4.52
101 102 0.965439 TCGGTTTGGGCTGAAATTGG 59.035 50.000 0.00 0.00 0.00 3.16
102 103 2.230992 TCATCGGTTTGGGCTGAAATTG 59.769 45.455 0.00 0.00 0.00 2.32
103 104 2.524306 TCATCGGTTTGGGCTGAAATT 58.476 42.857 0.00 0.00 0.00 1.82
104 105 2.214376 TCATCGGTTTGGGCTGAAAT 57.786 45.000 0.00 0.00 0.00 2.17
105 106 1.988293 TTCATCGGTTTGGGCTGAAA 58.012 45.000 0.00 0.00 0.00 2.69
106 107 1.988293 TTTCATCGGTTTGGGCTGAA 58.012 45.000 0.00 0.00 0.00 3.02
107 108 2.214376 ATTTCATCGGTTTGGGCTGA 57.786 45.000 0.00 0.00 0.00 4.26
108 109 2.995258 CAAATTTCATCGGTTTGGGCTG 59.005 45.455 0.00 0.00 31.08 4.85
109 110 2.028203 CCAAATTTCATCGGTTTGGGCT 60.028 45.455 7.95 0.00 45.05 5.19
110 111 2.345876 CCAAATTTCATCGGTTTGGGC 58.654 47.619 7.95 0.00 45.05 5.36
113 114 4.218417 AGGAGTCCAAATTTCATCGGTTTG 59.782 41.667 12.86 0.00 33.72 2.93
114 115 4.407365 AGGAGTCCAAATTTCATCGGTTT 58.593 39.130 12.86 0.00 0.00 3.27
115 116 4.034285 AGGAGTCCAAATTTCATCGGTT 57.966 40.909 12.86 0.00 0.00 4.44
116 117 3.721087 AGGAGTCCAAATTTCATCGGT 57.279 42.857 12.86 0.00 0.00 4.69
117 118 4.130118 CCTAGGAGTCCAAATTTCATCGG 58.870 47.826 12.86 0.00 0.00 4.18
118 119 4.130118 CCCTAGGAGTCCAAATTTCATCG 58.870 47.826 11.48 0.00 0.00 3.84
119 120 5.126779 GTCCCTAGGAGTCCAAATTTCATC 58.873 45.833 11.48 0.00 29.39 2.92
120 121 4.540099 TGTCCCTAGGAGTCCAAATTTCAT 59.460 41.667 11.48 0.00 29.39 2.57
121 122 3.913799 TGTCCCTAGGAGTCCAAATTTCA 59.086 43.478 11.48 1.07 29.39 2.69
122 123 4.262617 GTGTCCCTAGGAGTCCAAATTTC 58.737 47.826 11.48 0.00 29.39 2.17
123 124 3.307480 CGTGTCCCTAGGAGTCCAAATTT 60.307 47.826 11.48 0.00 29.39 1.82
124 125 2.236395 CGTGTCCCTAGGAGTCCAAATT 59.764 50.000 11.48 0.00 29.39 1.82
125 126 1.831736 CGTGTCCCTAGGAGTCCAAAT 59.168 52.381 11.48 0.00 29.39 2.32
126 127 1.203087 TCGTGTCCCTAGGAGTCCAAA 60.203 52.381 11.48 0.00 29.39 3.28
127 128 0.406750 TCGTGTCCCTAGGAGTCCAA 59.593 55.000 11.48 0.00 29.39 3.53
128 129 0.323178 GTCGTGTCCCTAGGAGTCCA 60.323 60.000 11.48 0.00 29.39 4.02
129 130 0.034283 AGTCGTGTCCCTAGGAGTCC 60.034 60.000 11.48 0.00 29.39 3.85
130 131 1.096416 CAGTCGTGTCCCTAGGAGTC 58.904 60.000 11.48 0.40 29.39 3.36
131 132 0.323542 CCAGTCGTGTCCCTAGGAGT 60.324 60.000 11.48 0.00 29.39 3.85
132 133 0.034380 TCCAGTCGTGTCCCTAGGAG 60.034 60.000 11.48 0.00 29.39 3.69
133 134 0.406750 TTCCAGTCGTGTCCCTAGGA 59.593 55.000 11.48 0.00 0.00 2.94
134 135 0.818296 CTTCCAGTCGTGTCCCTAGG 59.182 60.000 0.06 0.06 0.00 3.02
135 136 1.546961 ACTTCCAGTCGTGTCCCTAG 58.453 55.000 0.00 0.00 0.00 3.02
136 137 2.005370 AACTTCCAGTCGTGTCCCTA 57.995 50.000 0.00 0.00 0.00 3.53
137 138 1.129058 AAACTTCCAGTCGTGTCCCT 58.871 50.000 0.00 0.00 0.00 4.20
138 139 1.963172 AAAACTTCCAGTCGTGTCCC 58.037 50.000 0.00 0.00 0.00 4.46
156 157 2.895680 TTGCCGCCAGTGCAAAAA 59.104 50.000 0.00 0.00 45.11 1.94
159 160 2.895680 TTTTTGCCGCCAGTGCAA 59.104 50.000 0.00 0.00 46.30 4.08
182 183 4.702274 CCCCAACAGGCCCCAAGG 62.702 72.222 0.00 0.00 0.00 3.61
183 184 4.702274 CCCCCAACAGGCCCCAAG 62.702 72.222 0.00 0.00 0.00 3.61
206 207 2.592308 GAGCATCTCCACACCCCC 59.408 66.667 0.00 0.00 0.00 5.40
210 211 9.619741 AACTGGTAGTTAAGAGCATCTCCACAC 62.620 44.444 0.00 0.00 37.57 3.82
211 212 7.707751 AACTGGTAGTTAAGAGCATCTCCACA 61.708 42.308 0.00 0.00 37.57 4.17
212 213 5.337652 AACTGGTAGTTAAGAGCATCTCCAC 60.338 44.000 0.00 0.00 37.57 4.02
213 214 4.777896 AACTGGTAGTTAAGAGCATCTCCA 59.222 41.667 0.00 0.00 37.57 3.86
214 215 5.346181 AACTGGTAGTTAAGAGCATCTCC 57.654 43.478 0.00 0.00 37.57 3.71
334 335 5.916318 TCCATGCAAGTTCAGAAATTTTGT 58.084 33.333 0.00 0.00 0.00 2.83
364 365 4.282195 GGTGTGCTAGTAGGCAGATTCTAT 59.718 45.833 0.00 0.00 43.25 1.98
371 372 1.141881 CCGGTGTGCTAGTAGGCAG 59.858 63.158 0.00 0.00 43.25 4.85
415 1461 1.516161 ATGCTACTACATGCCATGCG 58.484 50.000 4.17 0.00 0.00 4.73
428 1474 3.119495 AGTTGGATTTCCGCAAATGCTAC 60.119 43.478 9.27 9.27 42.40 3.58
432 1478 2.518949 CGAGTTGGATTTCCGCAAATG 58.481 47.619 0.00 0.00 39.43 2.32
433 1479 1.472480 CCGAGTTGGATTTCCGCAAAT 59.528 47.619 0.00 0.00 42.00 2.32
434 1480 0.878416 CCGAGTTGGATTTCCGCAAA 59.122 50.000 0.00 0.00 42.00 3.68
435 1481 1.582610 GCCGAGTTGGATTTCCGCAA 61.583 55.000 0.00 0.00 42.00 4.85
436 1482 2.038269 GCCGAGTTGGATTTCCGCA 61.038 57.895 0.00 0.00 42.00 5.69
437 1483 2.038269 TGCCGAGTTGGATTTCCGC 61.038 57.895 0.00 0.00 42.00 5.54
438 1484 0.953471 TGTGCCGAGTTGGATTTCCG 60.953 55.000 0.00 0.00 42.00 4.30
439 1485 0.804989 CTGTGCCGAGTTGGATTTCC 59.195 55.000 0.00 0.00 42.00 3.13
440 1486 0.804989 CCTGTGCCGAGTTGGATTTC 59.195 55.000 0.00 0.00 42.00 2.17
441 1487 1.244019 GCCTGTGCCGAGTTGGATTT 61.244 55.000 0.00 0.00 42.00 2.17
442 1488 1.675641 GCCTGTGCCGAGTTGGATT 60.676 57.895 0.00 0.00 42.00 3.01
443 1489 1.264749 TAGCCTGTGCCGAGTTGGAT 61.265 55.000 0.00 0.00 42.00 3.41
444 1490 1.476845 TTAGCCTGTGCCGAGTTGGA 61.477 55.000 0.00 0.00 42.00 3.53
445 1491 0.392998 ATTAGCCTGTGCCGAGTTGG 60.393 55.000 0.00 0.00 38.69 3.77
446 1492 1.009829 GATTAGCCTGTGCCGAGTTG 58.990 55.000 0.00 0.00 38.69 3.16
447 1493 0.905357 AGATTAGCCTGTGCCGAGTT 59.095 50.000 0.00 0.00 38.69 3.01
448 1494 0.176680 CAGATTAGCCTGTGCCGAGT 59.823 55.000 0.00 0.00 38.69 4.18
449 1495 1.156645 GCAGATTAGCCTGTGCCGAG 61.157 60.000 0.00 0.00 38.69 4.63
450 1496 1.153369 GCAGATTAGCCTGTGCCGA 60.153 57.895 0.00 0.00 38.69 5.54
451 1497 1.153289 AGCAGATTAGCCTGTGCCG 60.153 57.895 0.00 0.00 36.13 5.69
452 1498 0.817229 GGAGCAGATTAGCCTGTGCC 60.817 60.000 0.00 0.00 36.13 5.01
453 1499 0.817229 GGGAGCAGATTAGCCTGTGC 60.817 60.000 0.00 0.00 36.57 4.57
454 1500 0.543277 TGGGAGCAGATTAGCCTGTG 59.457 55.000 0.00 0.00 36.57 3.66
455 1501 1.516110 ATGGGAGCAGATTAGCCTGT 58.484 50.000 0.00 0.00 36.57 4.00
456 1502 2.158711 TGAATGGGAGCAGATTAGCCTG 60.159 50.000 0.00 0.00 37.23 4.85
457 1503 2.106166 CTGAATGGGAGCAGATTAGCCT 59.894 50.000 0.00 0.00 34.06 4.58
458 1504 2.502295 CTGAATGGGAGCAGATTAGCC 58.498 52.381 0.00 0.00 34.06 3.93
459 1505 2.105477 TCCTGAATGGGAGCAGATTAGC 59.895 50.000 0.00 0.00 34.06 3.09
460 1506 4.428294 TTCCTGAATGGGAGCAGATTAG 57.572 45.455 0.00 0.00 36.66 1.73
461 1507 4.860802 TTTCCTGAATGGGAGCAGATTA 57.139 40.909 0.00 0.00 36.66 1.75
462 1508 3.744940 TTTCCTGAATGGGAGCAGATT 57.255 42.857 0.00 0.00 36.66 2.40
463 1509 3.744940 TTTTCCTGAATGGGAGCAGAT 57.255 42.857 0.00 0.00 36.66 2.90
464 1510 3.744940 ATTTTCCTGAATGGGAGCAGA 57.255 42.857 0.00 0.00 36.66 4.26
465 1511 4.813750 AAATTTTCCTGAATGGGAGCAG 57.186 40.909 0.00 0.00 36.66 4.24
466 1512 5.565455 AAAAATTTTCCTGAATGGGAGCA 57.435 34.783 3.41 0.00 36.66 4.26
530 1576 7.547019 GGATCTCACGCATCAAATTATCTATCA 59.453 37.037 0.00 0.00 0.00 2.15
532 1578 6.533012 CGGATCTCACGCATCAAATTATCTAT 59.467 38.462 0.00 0.00 0.00 1.98
534 1580 4.687948 CGGATCTCACGCATCAAATTATCT 59.312 41.667 0.00 0.00 0.00 1.98
535 1581 4.950926 CGGATCTCACGCATCAAATTATC 58.049 43.478 0.00 0.00 0.00 1.75
547 1593 3.125146 TGAAATTTGAAGCGGATCTCACG 59.875 43.478 0.00 0.00 0.00 4.35
548 1594 4.685169 TGAAATTTGAAGCGGATCTCAC 57.315 40.909 0.00 0.00 0.00 3.51
549 1595 4.761739 AGTTGAAATTTGAAGCGGATCTCA 59.238 37.500 0.00 0.00 0.00 3.27
550 1596 5.106555 TGAGTTGAAATTTGAAGCGGATCTC 60.107 40.000 0.00 0.00 0.00 2.75
551 1597 4.761739 TGAGTTGAAATTTGAAGCGGATCT 59.238 37.500 0.00 0.00 0.00 2.75
553 1599 5.649782 ATGAGTTGAAATTTGAAGCGGAT 57.350 34.783 0.00 0.00 0.00 4.18
554 1600 5.452078 AATGAGTTGAAATTTGAAGCGGA 57.548 34.783 0.00 0.00 0.00 5.54
555 1601 5.107375 CCAAATGAGTTGAAATTTGAAGCGG 60.107 40.000 9.16 0.00 43.41 5.52
556 1602 5.691305 TCCAAATGAGTTGAAATTTGAAGCG 59.309 36.000 9.16 0.00 43.41 4.68
557 1603 7.662604 ATCCAAATGAGTTGAAATTTGAAGC 57.337 32.000 9.16 0.00 43.41 3.86
573 1706 8.744652 ACCGAGAGATACTTAGATATCCAAATG 58.255 37.037 0.00 0.00 32.76 2.32
601 1734 9.472361 CATTGTTCTGATCAGATTTGTCTTTTT 57.528 29.630 25.64 1.27 37.29 1.94
603 1736 7.088905 GCATTGTTCTGATCAGATTTGTCTTT 58.911 34.615 25.64 3.88 37.29 2.52
604 1737 6.208007 TGCATTGTTCTGATCAGATTTGTCTT 59.792 34.615 25.64 5.39 37.29 3.01
607 2439 5.970317 TGCATTGTTCTGATCAGATTTGT 57.030 34.783 25.64 10.29 37.29 2.83
608 2440 6.560711 TCATGCATTGTTCTGATCAGATTTG 58.439 36.000 25.64 19.27 37.29 2.32
613 2445 5.106277 ACTGTTCATGCATTGTTCTGATCAG 60.106 40.000 17.07 17.07 39.58 2.90
616 2448 6.822667 TTACTGTTCATGCATTGTTCTGAT 57.177 33.333 0.00 0.00 0.00 2.90
621 2453 8.491331 AAAAAGTTTACTGTTCATGCATTGTT 57.509 26.923 0.00 0.00 0.00 2.83
643 2475 7.654022 AAGACAAATTCAGGGTCTGTAAAAA 57.346 32.000 0.00 0.00 40.80 1.94
645 2477 7.654022 AAAAGACAAATTCAGGGTCTGTAAA 57.346 32.000 0.00 0.00 40.80 2.01
646 2478 7.654022 AAAAAGACAAATTCAGGGTCTGTAA 57.346 32.000 0.00 0.00 40.80 2.41
668 2500 2.760092 ACCTGAGCAACTTTCAGCAAAA 59.240 40.909 0.00 0.00 40.54 2.44
669 2501 2.358898 GACCTGAGCAACTTTCAGCAAA 59.641 45.455 0.00 0.00 40.54 3.68
670 2502 1.949525 GACCTGAGCAACTTTCAGCAA 59.050 47.619 0.00 0.00 40.54 3.91
671 2503 1.141657 AGACCTGAGCAACTTTCAGCA 59.858 47.619 0.00 0.00 40.54 4.41
672 2504 1.803555 GAGACCTGAGCAACTTTCAGC 59.196 52.381 0.00 0.00 40.54 4.26
674 2506 1.768275 TGGAGACCTGAGCAACTTTCA 59.232 47.619 0.00 0.00 0.00 2.69
675 2507 2.550830 TGGAGACCTGAGCAACTTTC 57.449 50.000 0.00 0.00 0.00 2.62
676 2508 3.297134 TTTGGAGACCTGAGCAACTTT 57.703 42.857 0.00 0.00 0.00 2.66
678 2510 2.373169 TCATTTGGAGACCTGAGCAACT 59.627 45.455 0.00 0.00 0.00 3.16
679 2511 2.783135 TCATTTGGAGACCTGAGCAAC 58.217 47.619 0.00 0.00 0.00 4.17
691 2523 6.580788 TGCTTCAAAATTCAACTCATTTGGA 58.419 32.000 0.00 0.00 35.69 3.53
692 2524 6.702723 TCTGCTTCAAAATTCAACTCATTTGG 59.297 34.615 0.00 0.00 35.69 3.28
693 2525 7.306983 GGTCTGCTTCAAAATTCAACTCATTTG 60.307 37.037 0.00 0.00 36.42 2.32
695 2527 6.218746 GGTCTGCTTCAAAATTCAACTCATT 58.781 36.000 0.00 0.00 0.00 2.57
697 2529 4.037923 GGGTCTGCTTCAAAATTCAACTCA 59.962 41.667 0.00 0.00 0.00 3.41
698 2530 4.550422 GGGTCTGCTTCAAAATTCAACTC 58.450 43.478 0.00 0.00 0.00 3.01
699 2531 3.321968 GGGGTCTGCTTCAAAATTCAACT 59.678 43.478 0.00 0.00 0.00 3.16
700 2532 3.069443 TGGGGTCTGCTTCAAAATTCAAC 59.931 43.478 0.00 0.00 0.00 3.18
702 2534 2.627699 GTGGGGTCTGCTTCAAAATTCA 59.372 45.455 0.00 0.00 0.00 2.57
704 2536 1.613437 CGTGGGGTCTGCTTCAAAATT 59.387 47.619 0.00 0.00 0.00 1.82
707 2539 1.896660 GCGTGGGGTCTGCTTCAAA 60.897 57.895 0.00 0.00 0.00 2.69
709 2541 2.803155 GATGCGTGGGGTCTGCTTCA 62.803 60.000 0.00 0.00 34.15 3.02
711 2543 2.045926 GATGCGTGGGGTCTGCTT 60.046 61.111 0.00 0.00 0.00 3.91
714 2546 1.176527 AATTTGATGCGTGGGGTCTG 58.823 50.000 0.00 0.00 0.00 3.51
716 2548 3.214328 AGATAATTTGATGCGTGGGGTC 58.786 45.455 0.00 0.00 0.00 4.46
717 2549 3.297134 AGATAATTTGATGCGTGGGGT 57.703 42.857 0.00 0.00 0.00 4.95
718 2550 3.502211 GGTAGATAATTTGATGCGTGGGG 59.498 47.826 0.00 0.00 0.00 4.96
719 2551 4.024048 GTGGTAGATAATTTGATGCGTGGG 60.024 45.833 0.00 0.00 0.00 4.61
720 2552 4.574421 TGTGGTAGATAATTTGATGCGTGG 59.426 41.667 0.00 0.00 0.00 4.94
721 2553 5.064579 TGTGTGGTAGATAATTTGATGCGTG 59.935 40.000 0.00 0.00 0.00 5.34
722 2554 5.182487 TGTGTGGTAGATAATTTGATGCGT 58.818 37.500 0.00 0.00 0.00 5.24
723 2555 5.733226 TGTGTGGTAGATAATTTGATGCG 57.267 39.130 0.00 0.00 0.00 4.73
775 2607 9.010366 GCTCGGAAAAAGAATCATAACAAATAC 57.990 33.333 0.00 0.00 0.00 1.89
776 2608 7.908082 CGCTCGGAAAAAGAATCATAACAAATA 59.092 33.333 0.00 0.00 0.00 1.40
777 2609 6.747280 CGCTCGGAAAAAGAATCATAACAAAT 59.253 34.615 0.00 0.00 0.00 2.32
778 2610 6.083630 CGCTCGGAAAAAGAATCATAACAAA 58.916 36.000 0.00 0.00 0.00 2.83
779 2611 5.627172 CGCTCGGAAAAAGAATCATAACAA 58.373 37.500 0.00 0.00 0.00 2.83
780 2612 4.436852 GCGCTCGGAAAAAGAATCATAACA 60.437 41.667 0.00 0.00 0.00 2.41
781 2613 4.029043 GCGCTCGGAAAAAGAATCATAAC 58.971 43.478 0.00 0.00 0.00 1.89
782 2614 3.242284 CGCGCTCGGAAAAAGAATCATAA 60.242 43.478 5.56 0.00 0.00 1.90
783 2615 2.284150 CGCGCTCGGAAAAAGAATCATA 59.716 45.455 5.56 0.00 0.00 2.15
784 2616 1.062587 CGCGCTCGGAAAAAGAATCAT 59.937 47.619 5.56 0.00 0.00 2.45
785 2617 0.442310 CGCGCTCGGAAAAAGAATCA 59.558 50.000 5.56 0.00 0.00 2.57
786 2618 3.204811 CGCGCTCGGAAAAAGAATC 57.795 52.632 5.56 0.00 0.00 2.52
798 2630 4.819761 TCATCTGCACCCGCGCTC 62.820 66.667 5.56 0.00 42.97 5.03
799 2631 4.827087 CTCATCTGCACCCGCGCT 62.827 66.667 5.56 0.00 42.97 5.92
801 2633 2.887568 GACTCATCTGCACCCGCG 60.888 66.667 0.00 0.00 42.97 6.46
802 2634 2.512515 GGACTCATCTGCACCCGC 60.513 66.667 0.00 0.00 39.24 6.13
803 2635 2.202797 CGGACTCATCTGCACCCG 60.203 66.667 0.00 0.00 0.00 5.28
804 2636 2.187946 CCGGACTCATCTGCACCC 59.812 66.667 0.00 0.00 0.00 4.61
805 2637 1.142748 CTCCGGACTCATCTGCACC 59.857 63.158 0.00 0.00 0.00 5.01
806 2638 1.142748 CCTCCGGACTCATCTGCAC 59.857 63.158 0.00 0.00 0.00 4.57
807 2639 1.000359 TCCTCCGGACTCATCTGCA 60.000 57.895 0.00 0.00 0.00 4.41
808 2640 0.753479 TCTCCTCCGGACTCATCTGC 60.753 60.000 0.00 0.00 0.00 4.26
809 2641 1.769026 TTCTCCTCCGGACTCATCTG 58.231 55.000 0.00 0.00 0.00 2.90
810 2642 2.104170 GTTTCTCCTCCGGACTCATCT 58.896 52.381 0.00 0.00 0.00 2.90
811 2643 2.100087 GAGTTTCTCCTCCGGACTCATC 59.900 54.545 0.00 0.00 37.33 2.92
812 2644 2.104170 GAGTTTCTCCTCCGGACTCAT 58.896 52.381 0.00 0.00 37.33 2.90
813 2645 1.546961 GAGTTTCTCCTCCGGACTCA 58.453 55.000 0.00 0.00 37.33 3.41
814 2646 0.818938 GGAGTTTCTCCTCCGGACTC 59.181 60.000 0.00 4.09 46.41 3.36
815 2647 2.979058 GGAGTTTCTCCTCCGGACT 58.021 57.895 0.00 0.00 46.41 3.85
824 2656 2.924290 GTCATGCTACGTGGAGTTTCTC 59.076 50.000 1.81 0.00 0.00 2.87
825 2657 2.299013 TGTCATGCTACGTGGAGTTTCT 59.701 45.455 1.81 0.00 0.00 2.52
826 2658 2.683968 TGTCATGCTACGTGGAGTTTC 58.316 47.619 1.81 0.00 0.00 2.78
827 2659 2.831685 TGTCATGCTACGTGGAGTTT 57.168 45.000 1.81 0.00 0.00 2.66
828 2660 3.447586 AGTATGTCATGCTACGTGGAGTT 59.552 43.478 1.81 0.00 0.00 3.01
829 2661 3.024547 AGTATGTCATGCTACGTGGAGT 58.975 45.455 1.81 0.00 0.00 3.85
830 2662 3.375642 CAGTATGTCATGCTACGTGGAG 58.624 50.000 1.81 0.00 0.00 3.86
831 2663 3.436700 CAGTATGTCATGCTACGTGGA 57.563 47.619 1.81 0.00 0.00 4.02
851 2683 5.335504 GCATCCCCTCTACGTACTGTATTAC 60.336 48.000 0.00 0.00 31.20 1.89
853 2685 3.573110 GCATCCCCTCTACGTACTGTATT 59.427 47.826 0.00 0.00 31.20 1.89
854 2686 3.155501 GCATCCCCTCTACGTACTGTAT 58.844 50.000 0.00 0.00 31.20 2.29
855 2687 2.579873 GCATCCCCTCTACGTACTGTA 58.420 52.381 0.00 0.00 0.00 2.74
856 2688 1.400737 GCATCCCCTCTACGTACTGT 58.599 55.000 0.00 0.00 0.00 3.55
858 2690 3.128681 GGCATCCCCTCTACGTACT 57.871 57.895 0.00 0.00 0.00 2.73
886 2801 8.617290 AAAAACAGGATTCTTGTCTACGTTAT 57.383 30.769 1.51 0.00 0.00 1.89
1059 2974 3.437049 GGAGTGGACGAAGGAAGAAAATG 59.563 47.826 0.00 0.00 0.00 2.32
1060 2975 3.559384 GGGAGTGGACGAAGGAAGAAAAT 60.559 47.826 0.00 0.00 0.00 1.82
1080 2995 3.642778 ATGGTCGCGACGAACTGGG 62.643 63.158 30.99 0.00 44.60 4.45
1258 3174 1.257936 CGGAAACATCGCCTTCATACG 59.742 52.381 0.00 0.00 0.00 3.06
1267 3183 1.798725 TCGTCGTCGGAAACATCGC 60.799 57.895 1.55 0.00 37.69 4.58
1271 3187 1.082561 CTCGTCGTCGTCGGAAACA 60.083 57.895 11.74 0.00 38.33 2.83
1275 3191 2.812609 CCTCTCGTCGTCGTCGGA 60.813 66.667 11.74 7.30 38.33 4.55
1278 3194 2.783935 GTCCCTCTCGTCGTCGTC 59.216 66.667 1.33 0.00 38.33 4.20
1294 3210 2.221906 AATAGCGCCGAAGTCACCGT 62.222 55.000 2.29 0.00 0.00 4.83
1302 3218 2.588027 TCATACACAATAGCGCCGAA 57.412 45.000 2.29 0.00 0.00 4.30
1320 3236 0.591741 CGGTCGGTAGCATCGTCTTC 60.592 60.000 0.00 0.00 0.00 2.87
1321 3237 1.432251 CGGTCGGTAGCATCGTCTT 59.568 57.895 0.00 0.00 0.00 3.01
1322 3238 3.108343 CGGTCGGTAGCATCGTCT 58.892 61.111 0.00 0.00 0.00 4.18
1325 3241 4.246206 TCGCGGTCGGTAGCATCG 62.246 66.667 6.13 0.00 36.13 3.84
1330 3246 3.152937 CTCTCGTCGCGGTCGGTAG 62.153 68.421 19.98 14.69 36.13 3.18
1434 3350 2.246397 CAAGCACACGACGCACTG 59.754 61.111 0.00 0.00 0.00 3.66
1466 3382 1.338107 ACTTCCTGATGTCGTCACCA 58.662 50.000 0.00 0.00 32.22 4.17
1490 3406 1.751927 GTGGAAGCCATGGGAGCAG 60.752 63.158 15.13 0.00 35.28 4.24
1663 3579 2.572647 CGTCGCCGTCGTCAGTAC 60.573 66.667 0.00 0.00 36.96 2.73
1671 3587 4.511443 ATCGTCGTCGTCGCCGTC 62.511 66.667 5.34 0.00 39.43 4.79
1672 3588 4.806481 CATCGTCGTCGTCGCCGT 62.806 66.667 5.34 0.00 39.43 5.68
1673 3589 4.509883 TCATCGTCGTCGTCGCCG 62.510 66.667 7.01 0.00 39.77 6.46
1674 3590 2.943034 GTCATCGTCGTCGTCGCC 60.943 66.667 7.01 0.00 38.33 5.54
1675 3591 1.794785 TTGTCATCGTCGTCGTCGC 60.795 57.895 7.01 0.00 38.33 5.19
1676 3592 1.393597 GGTTGTCATCGTCGTCGTCG 61.394 60.000 5.50 5.50 38.33 5.12
1688 3604 1.271102 TCATCGTCATCGTGGTTGTCA 59.729 47.619 0.00 0.00 38.33 3.58
1709 3625 4.998671 AACACGACTCTCATCATCATCT 57.001 40.909 0.00 0.00 0.00 2.90
1914 3979 7.630242 TTGCTCGATAATTTCAGAGGAAAAT 57.370 32.000 7.74 0.00 45.52 1.82
1959 4025 1.411246 ACCACTCGGAATGCGCTATAA 59.589 47.619 9.73 0.00 35.59 0.98
2036 4102 9.967451 TGTCTTATTGTCTTATTTGGTCCATAA 57.033 29.630 0.00 0.00 0.00 1.90
2037 4103 9.967451 TTGTCTTATTGTCTTATTTGGTCCATA 57.033 29.630 0.00 0.00 0.00 2.74
2038 4104 8.877864 TTGTCTTATTGTCTTATTTGGTCCAT 57.122 30.769 0.00 0.00 0.00 3.41
2039 4105 8.877864 ATTGTCTTATTGTCTTATTTGGTCCA 57.122 30.769 0.00 0.00 0.00 4.02
2057 4123 7.872483 CCAGTTTATGCCAAACTTAATTGTCTT 59.128 33.333 10.05 0.00 38.32 3.01
2059 4125 7.151976 ACCAGTTTATGCCAAACTTAATTGTC 58.848 34.615 10.05 0.00 38.32 3.18
2168 4237 0.034574 AATGGTGCACCCGCTAATCA 60.035 50.000 32.62 12.24 39.64 2.57
2240 4309 4.266976 CGAATTTGGTAGGTGTACGATGTC 59.733 45.833 0.00 0.00 0.00 3.06
2243 4312 4.082081 TGTCGAATTTGGTAGGTGTACGAT 60.082 41.667 0.00 0.00 0.00 3.73
2255 4324 6.826893 AAAACATCAAAGTGTCGAATTTGG 57.173 33.333 15.16 6.50 37.09 3.28
2290 4359 2.159421 TCACGCTAGGTTGAGACGATTC 60.159 50.000 0.00 0.00 0.00 2.52
2295 4364 3.628487 ACTAGATCACGCTAGGTTGAGAC 59.372 47.826 0.00 0.00 41.69 3.36
2312 4381 7.724287 TGACGATTCTCTAGCTTAGTACTAGA 58.276 38.462 2.23 0.00 42.94 2.43
2337 4406 1.454539 CCGTGACCAAACCTCCCTT 59.545 57.895 0.00 0.00 0.00 3.95
2375 4444 5.751243 TTTTGTAGAAGTGCCAAAGAGTC 57.249 39.130 0.00 0.00 30.51 3.36
2397 4467 6.381133 ACCTGACCAACTTCAAGAAAGAAAAT 59.619 34.615 0.00 0.00 38.44 1.82
2400 4470 4.855340 ACCTGACCAACTTCAAGAAAGAA 58.145 39.130 0.00 0.00 38.44 2.52
2419 4489 1.163554 GAGGAGTGTCGTACGAACCT 58.836 55.000 21.39 23.17 35.88 3.50
2463 4533 6.727824 ACACAAAGATTTATCCAAGACTCG 57.272 37.500 0.00 0.00 0.00 4.18
2521 4592 2.450476 CTCTGAATGAAACCAAGGGGG 58.550 52.381 0.00 0.00 44.81 5.40
2571 4642 3.769844 CACACCTTACACCTACCATCTCT 59.230 47.826 0.00 0.00 0.00 3.10
2590 4661 3.256704 ACCCAAGATTACCTCTTCCACA 58.743 45.455 0.00 0.00 42.48 4.17
2616 4688 4.141620 CCTCTCCTAGCACACCATAAACAT 60.142 45.833 0.00 0.00 0.00 2.71
2628 4700 0.636647 TGTCATCCCCTCTCCTAGCA 59.363 55.000 0.00 0.00 0.00 3.49
2646 4718 8.859236 AAGTGGTAAATCATGATCTATGGATG 57.141 34.615 9.06 0.00 37.39 3.51
2655 4727 7.855375 TGAGAGAGAAAGTGGTAAATCATGAT 58.145 34.615 1.18 1.18 0.00 2.45
2755 6260 8.979574 GTCGATGGAGAATAACGATAAAAAGAT 58.020 33.333 0.00 0.00 35.57 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.