Multiple sequence alignment - TraesCS4A01G185500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G185500 chr4A 100.000 2563 0 0 1 2563 464988058 464990620 0.000000e+00 4734
1 TraesCS4A01G185500 chr4A 81.690 284 45 3 2 278 1133855 1133572 1.980000e-56 230
2 TraesCS4A01G185500 chr4D 93.972 1742 74 11 775 2506 112197679 112195959 0.000000e+00 2606
3 TraesCS4A01G185500 chr4D 80.900 733 83 20 23 704 112230666 112229940 2.260000e-145 525
4 TraesCS4A01G185500 chr4B 93.671 1027 38 10 1552 2563 172776766 172775752 0.000000e+00 1511
5 TraesCS4A01G185500 chr4B 93.850 374 17 2 1192 1565 172783195 172782828 2.230000e-155 558
6 TraesCS4A01G185500 chr4B 91.935 372 24 4 622 991 172790170 172789803 1.360000e-142 516
7 TraesCS4A01G185500 chr4B 81.364 660 84 17 2 629 172792188 172791536 3.810000e-138 501
8 TraesCS4A01G185500 chr4B 80.833 360 56 7 2 353 130618835 130619189 1.170000e-68 270
9 TraesCS4A01G185500 chr4B 98.462 65 1 0 1038 1102 172789806 172789742 5.790000e-22 115
10 TraesCS4A01G185500 chr4B 98.387 62 1 0 1135 1196 172789737 172789676 2.700000e-20 110
11 TraesCS4A01G185500 chr5D 80.769 364 60 5 2 359 456591284 456590925 2.510000e-70 276
12 TraesCS4A01G185500 chr5D 80.986 284 47 2 2 278 487270539 487270256 4.290000e-53 219
13 TraesCS4A01G185500 chr5D 78.700 277 48 7 4 274 400266822 400266551 9.430000e-40 174
14 TraesCS4A01G185500 chr7A 77.778 369 64 12 2 359 30088791 30089152 7.180000e-51 211
15 TraesCS4A01G185500 chr7A 81.092 238 29 10 463 689 341444291 341444523 2.620000e-40 176
16 TraesCS4A01G185500 chr7D 77.568 370 59 17 1 359 504538897 504539253 4.320000e-48 202
17 TraesCS4A01G185500 chr7D 82.237 152 25 2 549 699 29537994 29537844 2.070000e-26 130
18 TraesCS4A01G185500 chr5A 82.474 194 30 3 498 689 616153221 616153030 1.580000e-37 167
19 TraesCS4A01G185500 chr6D 81.218 197 30 6 498 692 434464473 434464282 4.420000e-33 152
20 TraesCS4A01G185500 chr6D 80.198 202 31 8 494 689 38894848 38895046 2.660000e-30 143
21 TraesCS4A01G185500 chr5B 78.689 244 36 12 460 689 678022236 678022477 5.710000e-32 148
22 TraesCS4A01G185500 chr7B 82.051 156 24 3 535 689 700788396 700788244 2.070000e-26 130
23 TraesCS4A01G185500 chr1B 79.474 190 28 6 506 693 458010566 458010746 9.630000e-25 124
24 TraesCS4A01G185500 chr2A 78.125 192 29 5 498 689 78740995 78740817 2.700000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G185500 chr4A 464988058 464990620 2562 False 4734.0 4734 100.000 1 2563 1 chr4A.!!$F1 2562
1 TraesCS4A01G185500 chr4D 112195959 112197679 1720 True 2606.0 2606 93.972 775 2506 1 chr4D.!!$R1 1731
2 TraesCS4A01G185500 chr4D 112229940 112230666 726 True 525.0 525 80.900 23 704 1 chr4D.!!$R2 681
3 TraesCS4A01G185500 chr4B 172775752 172776766 1014 True 1511.0 1511 93.671 1552 2563 1 chr4B.!!$R1 1011
4 TraesCS4A01G185500 chr4B 172789676 172792188 2512 True 310.5 516 92.537 2 1196 4 chr4B.!!$R3 1194

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
301 308 0.105039 CCGGATCCAAGGCACTAGAC 59.895 60.0 13.41 0.0 38.49 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 3260 0.191064 ACCTCCCCACTGAAGACTGA 59.809 55.0 0.0 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.204074 TGCCCCTAAGGACCAGCA 60.204 61.111 0.00 0.00 38.24 4.41
20 21 1.619363 TGCCCCTAAGGACCAGCAT 60.619 57.895 0.00 0.00 38.24 3.79
70 71 4.424626 TCCTTGAATCGATCTGAAGAACG 58.575 43.478 0.00 3.81 40.92 3.95
74 75 4.166523 TGAATCGATCTGAAGAACGTGAC 58.833 43.478 0.00 3.98 40.52 3.67
86 87 6.384224 TGAAGAACGTGACACTAAATATCGT 58.616 36.000 3.68 0.00 0.00 3.73
96 97 6.532302 TGACACTAAATATCGTTGTTGCGTAT 59.468 34.615 0.00 0.00 0.00 3.06
117 118 1.719780 GCACGGTGAGAAACTCTAACG 59.280 52.381 13.29 0.00 28.03 3.18
123 124 3.120060 GGTGAGAAACTCTAACGTCGCTA 60.120 47.826 0.00 0.00 28.03 4.26
126 127 2.163211 AGAAACTCTAACGTCGCTACCC 59.837 50.000 0.00 0.00 0.00 3.69
133 134 3.885521 CGTCGCTACCCCGAGGAC 61.886 72.222 0.00 0.00 43.49 3.85
139 140 3.976490 CTACCCCGAGGACCTGGCA 62.976 68.421 0.00 0.00 36.73 4.92
145 146 1.144936 CGAGGACCTGGCAGGAATC 59.855 63.158 38.99 27.83 37.67 2.52
151 152 2.486191 GGACCTGGCAGGAATCTACATG 60.486 54.545 38.99 9.52 37.67 3.21
171 172 1.694696 GGGAGCTCCATCTAATCCGTT 59.305 52.381 33.29 0.00 37.91 4.44
190 191 4.561735 GTTCCAACGGACAAATTTGAGA 57.438 40.909 24.64 6.55 0.00 3.27
201 202 5.298026 GGACAAATTTGAGAAGGATAGGAGC 59.702 44.000 24.64 0.00 0.00 4.70
211 218 1.289231 AGGATAGGAGCCACTGACTCA 59.711 52.381 0.00 0.00 35.79 3.41
226 233 5.692204 CACTGACTCAAAGAATAAGTGTCGT 59.308 40.000 0.00 0.00 31.21 4.34
263 270 1.073284 GCCCTGTGAGGACTAAAACCA 59.927 52.381 0.00 0.00 37.67 3.67
281 288 9.915629 CTAAAACCATACTTATCTACTAGCCAG 57.084 37.037 0.00 0.00 0.00 4.85
282 289 5.986501 ACCATACTTATCTACTAGCCAGC 57.013 43.478 0.00 0.00 0.00 4.85
283 290 4.773149 ACCATACTTATCTACTAGCCAGCC 59.227 45.833 0.00 0.00 0.00 4.85
289 296 0.539901 TCTACTAGCCAGCCGGATCC 60.540 60.000 5.05 0.00 29.71 3.36
290 297 0.827925 CTACTAGCCAGCCGGATCCA 60.828 60.000 13.41 0.00 29.71 3.41
301 308 0.105039 CCGGATCCAAGGCACTAGAC 59.895 60.000 13.41 0.00 38.49 2.59
307 314 1.207791 CCAAGGCACTAGACATCCCT 58.792 55.000 0.00 0.00 38.49 4.20
320 327 1.930656 ATCCCTTCCCCACCACTGG 60.931 63.158 0.00 0.00 37.29 4.00
353 360 0.883814 GAGCAGAGGGATGGCGAATG 60.884 60.000 0.00 0.00 0.00 2.67
359 366 2.513666 GGATGGCGAATGCACGGA 60.514 61.111 0.00 0.00 45.35 4.69
363 370 0.747644 ATGGCGAATGCACGGATTCA 60.748 50.000 11.19 0.00 45.35 2.57
378 391 1.152204 TTCACCGGTGAAGGGGAGA 60.152 57.895 39.59 21.05 45.71 3.71
398 419 0.853530 AAAGCTTTCCCCAGTCAGGT 59.146 50.000 5.69 0.00 34.66 4.00
433 454 5.010617 GGAAACACTCCACCATACATGTTTT 59.989 40.000 2.30 0.00 44.67 2.43
451 472 5.568023 ATGTTTTGCATCCCTCATTGTTGAG 60.568 40.000 0.00 0.00 40.43 3.02
465 486 8.434870 CTCATTGTTGAGGTATGTTTTAAACG 57.565 34.615 3.28 0.00 44.78 3.60
482 503 4.454728 AAACGCAAATGATAAGTGCCAT 57.545 36.364 0.00 0.00 34.73 4.40
485 506 5.772825 ACGCAAATGATAAGTGCCATATT 57.227 34.783 0.00 0.00 34.73 1.28
488 509 6.183360 ACGCAAATGATAAGTGCCATATTTGA 60.183 34.615 10.61 0.00 37.58 2.69
501 531 2.787473 TATTTGAGGCACTGACCCTG 57.213 50.000 0.00 0.00 41.55 4.45
504 534 0.764369 TTGAGGCACTGACCCTGACT 60.764 55.000 0.00 0.00 41.55 3.41
508 538 1.202818 AGGCACTGACCCTGACTTTTC 60.203 52.381 0.00 0.00 37.18 2.29
523 553 7.598869 CCCTGACTTTTCTAAATTAAAGTTGCC 59.401 37.037 5.72 0.00 42.82 4.52
595 648 9.167311 CTAAAAAGAGTAGTTGCCATACTTGAT 57.833 33.333 0.00 0.00 33.64 2.57
599 652 6.583562 AGAGTAGTTGCCATACTTGATAACC 58.416 40.000 0.00 0.00 33.64 2.85
607 660 5.772672 TGCCATACTTGATAACCAAAGTTGT 59.227 36.000 0.00 0.00 36.68 3.32
615 668 5.875224 TGATAACCAAAGTTGTCATCCTCA 58.125 37.500 1.81 0.00 45.73 3.86
629 682 5.995282 TGTCATCCTCACGTCATTAAACTTT 59.005 36.000 0.00 0.00 0.00 2.66
655 2082 2.296073 AAAAGTTCGGGGTTGCCATA 57.704 45.000 0.00 0.00 0.00 2.74
690 2117 2.993899 CGTGTGACACTTATCAGGGTTC 59.006 50.000 14.42 0.00 36.47 3.62
691 2118 3.554129 CGTGTGACACTTATCAGGGTTCA 60.554 47.826 14.42 0.00 36.47 3.18
698 2125 8.573035 GTGACACTTATCAGGGTTCATTTTAAA 58.427 33.333 0.00 0.00 36.47 1.52
749 2176 6.014584 ACCAAACAGAGTTTTGTCCTTTCTTT 60.015 34.615 0.00 0.00 35.09 2.52
750 2177 7.177744 ACCAAACAGAGTTTTGTCCTTTCTTTA 59.822 33.333 0.00 0.00 35.09 1.85
751 2178 8.197439 CCAAACAGAGTTTTGTCCTTTCTTTAT 58.803 33.333 0.00 0.00 35.09 1.40
848 2275 6.077838 CGAACTAACACTGCCAAATTTAGAC 58.922 40.000 0.00 0.00 0.00 2.59
872 2299 2.293677 AACAAGATGATCAGCGCGTA 57.706 45.000 8.43 0.00 0.00 4.42
911 2338 2.584608 GTCCCCGTCTCCATGTGG 59.415 66.667 0.00 0.00 0.00 4.17
930 2357 1.357334 CGCTTACTCGCTCTCCTCC 59.643 63.158 0.00 0.00 0.00 4.30
1010 2437 3.612717 GCTAATTCTCGCATCGATCCTCA 60.613 47.826 0.00 0.00 34.61 3.86
1093 2520 1.447838 CAGTGCCCGAATACGTGCT 60.448 57.895 0.00 0.00 42.77 4.40
1252 2679 1.068753 CAGACGAGGCCATAGCTGG 59.931 63.158 5.01 0.00 46.17 4.85
1292 2719 2.851071 CGAGATGAGGGAGGACGGC 61.851 68.421 0.00 0.00 0.00 5.68
1316 2743 1.374758 GGTGTGCCTCGAGGACTTG 60.375 63.158 35.69 8.57 37.39 3.16
1327 2754 3.319198 GGACTTGGAGGGTGGCGA 61.319 66.667 0.00 0.00 0.00 5.54
1394 2821 2.109126 GTGCATCTTCCGGTGGCTC 61.109 63.158 0.00 0.00 0.00 4.70
1395 2822 2.514824 GCATCTTCCGGTGGCTCC 60.515 66.667 0.00 0.00 0.00 4.70
1516 2943 2.413453 GAGCTGAAACCAACTGACGATC 59.587 50.000 0.00 0.00 0.00 3.69
1517 2944 1.126846 GCTGAAACCAACTGACGATCG 59.873 52.381 14.88 14.88 0.00 3.69
1518 2945 2.672714 CTGAAACCAACTGACGATCGA 58.327 47.619 24.34 0.00 0.00 3.59
1519 2946 3.254060 CTGAAACCAACTGACGATCGAT 58.746 45.455 24.34 5.96 0.00 3.59
1520 2947 3.659786 TGAAACCAACTGACGATCGATT 58.340 40.909 24.34 7.46 0.00 3.34
1521 2948 4.062293 TGAAACCAACTGACGATCGATTT 58.938 39.130 24.34 0.00 0.00 2.17
1522 2949 4.084066 TGAAACCAACTGACGATCGATTTG 60.084 41.667 24.34 16.82 0.00 2.32
1523 2950 3.313012 ACCAACTGACGATCGATTTGA 57.687 42.857 24.34 0.00 0.00 2.69
1530 2957 7.584123 CCAACTGACGATCGATTTGATAATTTC 59.416 37.037 24.34 4.50 37.47 2.17
1595 3022 1.911357 ACTGGTTCTGAGCCATGATGA 59.089 47.619 13.86 0.00 35.19 2.92
1645 3072 3.392616 ACATGAACAAGGGTCTCTGTTCT 59.607 43.478 14.13 0.64 40.67 3.01
1646 3073 4.593206 ACATGAACAAGGGTCTCTGTTCTA 59.407 41.667 14.13 3.95 40.67 2.10
1647 3074 4.602340 TGAACAAGGGTCTCTGTTCTAC 57.398 45.455 14.13 0.00 40.67 2.59
1648 3075 4.223953 TGAACAAGGGTCTCTGTTCTACT 58.776 43.478 14.13 0.00 40.67 2.57
1704 3131 5.446473 CGTTACACACTAGACCTAGTTACCG 60.446 48.000 6.95 0.00 43.35 4.02
1730 3157 8.102484 AGTTAAGGAAAGGAGGAATATTAGCA 57.898 34.615 0.00 0.00 0.00 3.49
1779 3207 1.818674 CCCCAGAGAACCAAAATTCGG 59.181 52.381 0.00 0.00 33.57 4.30
1781 3209 1.885887 CCAGAGAACCAAAATTCGGCA 59.114 47.619 0.00 0.00 33.57 5.69
1830 3258 3.154827 TCCAACAATCCTGTTCCTTCC 57.845 47.619 0.00 0.00 44.15 3.46
1831 3259 2.171003 CCAACAATCCTGTTCCTTCCC 58.829 52.381 0.00 0.00 44.15 3.97
1832 3260 2.225117 CCAACAATCCTGTTCCTTCCCT 60.225 50.000 0.00 0.00 44.15 4.20
1841 3269 2.634940 CTGTTCCTTCCCTCAGTCTTCA 59.365 50.000 0.00 0.00 0.00 3.02
2147 3575 3.799753 CGATCCCCAGTTTCGCTG 58.200 61.111 0.00 0.00 44.63 5.18
2374 3805 7.664552 AAACCCAATATTGTCATGTCATCAT 57.335 32.000 14.25 0.00 34.21 2.45
2376 3807 7.664552 ACCCAATATTGTCATGTCATCATTT 57.335 32.000 14.25 0.00 31.15 2.32
2489 3931 5.234466 ACTGTAACAGCAAAGAAGGAGAT 57.766 39.130 0.00 0.00 34.37 2.75
2518 3961 7.873719 TTCAGGCTATTTGAATTCGGAATAA 57.126 32.000 3.22 0.00 30.03 1.40
2524 3967 7.926018 GGCTATTTGAATTCGGAATAACCATTT 59.074 33.333 19.12 0.00 38.90 2.32
2534 3977 5.057149 CGGAATAACCATTTCCCAGAGTAG 58.943 45.833 0.00 0.00 39.63 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.326773 CTGAGGCTCTGGGATGCTGG 62.327 65.000 16.72 0.00 0.00 4.85
19 20 1.000993 ACGACTGAGGCTCTGGGAT 59.999 57.895 22.99 4.67 0.00 3.85
20 21 1.679305 GACGACTGAGGCTCTGGGA 60.679 63.158 22.99 0.00 0.00 4.37
70 71 5.013236 CGCAACAACGATATTTAGTGTCAC 58.987 41.667 0.00 0.00 34.06 3.67
74 75 5.615581 GCATACGCAACAACGATATTTAGTG 59.384 40.000 0.00 0.00 38.36 2.74
96 97 2.750948 GTTAGAGTTTCTCACCGTGCA 58.249 47.619 0.00 0.00 32.06 4.57
103 104 3.120060 GGTAGCGACGTTAGAGTTTCTCA 60.120 47.826 0.00 0.00 32.06 3.27
117 118 3.525545 GGTCCTCGGGGTAGCGAC 61.526 72.222 0.00 0.00 0.00 5.19
126 127 2.317149 GATTCCTGCCAGGTCCTCGG 62.317 65.000 11.27 0.00 36.53 4.63
133 134 1.202855 CCCATGTAGATTCCTGCCAGG 60.203 57.143 3.69 3.69 36.46 4.45
139 140 2.334023 GGAGCTCCCATGTAGATTCCT 58.666 52.381 23.19 0.00 34.14 3.36
151 152 1.343069 ACGGATTAGATGGAGCTCCC 58.657 55.000 29.95 15.52 34.29 4.30
171 172 3.568007 CCTTCTCAAATTTGTCCGTTGGA 59.432 43.478 17.47 4.14 0.00 3.53
181 182 5.044550 AGTGGCTCCTATCCTTCTCAAATTT 60.045 40.000 0.00 0.00 0.00 1.82
190 191 2.292521 TGAGTCAGTGGCTCCTATCCTT 60.293 50.000 21.72 0.00 32.31 3.36
201 202 5.119279 CGACACTTATTCTTTGAGTCAGTGG 59.881 44.000 9.02 0.00 35.50 4.00
263 270 4.017808 CCGGCTGGCTAGTAGATAAGTAT 58.982 47.826 0.00 0.00 0.00 2.12
281 288 1.227674 CTAGTGCCTTGGATCCGGC 60.228 63.158 20.60 20.60 46.46 6.13
282 289 0.105039 GTCTAGTGCCTTGGATCCGG 59.895 60.000 7.39 4.10 0.00 5.14
283 290 0.824109 TGTCTAGTGCCTTGGATCCG 59.176 55.000 7.39 0.00 0.00 4.18
289 296 2.420687 GGAAGGGATGTCTAGTGCCTTG 60.421 54.545 9.04 0.00 45.88 3.61
297 304 0.419865 TGGTGGGGAAGGGATGTCTA 59.580 55.000 0.00 0.00 0.00 2.59
301 308 1.304282 CAGTGGTGGGGAAGGGATG 59.696 63.158 0.00 0.00 0.00 3.51
335 342 1.147824 CATTCGCCATCCCTCTGCT 59.852 57.895 0.00 0.00 0.00 4.24
342 349 1.447317 AATCCGTGCATTCGCCATCC 61.447 55.000 0.00 0.00 37.32 3.51
344 351 0.747644 TGAATCCGTGCATTCGCCAT 60.748 50.000 0.00 0.00 35.78 4.40
363 370 0.400594 CTTTTCTCCCCTTCACCGGT 59.599 55.000 0.00 0.00 0.00 5.28
378 391 1.217942 ACCTGACTGGGGAAAGCTTTT 59.782 47.619 14.05 0.00 41.11 2.27
390 403 3.411446 TCCAATTAGTGCAACCTGACTG 58.589 45.455 0.00 0.00 37.80 3.51
398 419 4.846779 GGAGTGTTTCCAATTAGTGCAA 57.153 40.909 0.00 0.00 46.01 4.08
451 472 9.349145 ACTTATCATTTGCGTTTAAAACATACC 57.651 29.630 0.00 0.00 0.00 2.73
465 486 6.643770 CCTCAAATATGGCACTTATCATTTGC 59.356 38.462 0.00 0.00 34.77 3.68
482 503 2.027192 GTCAGGGTCAGTGCCTCAAATA 60.027 50.000 4.00 0.00 0.00 1.40
485 506 0.764369 AGTCAGGGTCAGTGCCTCAA 60.764 55.000 4.00 0.00 0.00 3.02
488 509 0.846693 AAAAGTCAGGGTCAGTGCCT 59.153 50.000 4.00 0.00 0.00 4.75
494 515 8.990163 ACTTTAATTTAGAAAAGTCAGGGTCA 57.010 30.769 0.00 0.00 40.96 4.02
564 596 9.331282 GTATGGCAACTACTCTTTTTAGATGAT 57.669 33.333 0.00 0.00 37.61 2.45
565 597 8.540388 AGTATGGCAACTACTCTTTTTAGATGA 58.460 33.333 0.00 0.00 37.61 2.92
578 610 6.995511 TTGGTTATCAAGTATGGCAACTAC 57.004 37.500 0.00 0.00 37.61 2.73
579 611 7.172342 ACTTTGGTTATCAAGTATGGCAACTA 58.828 34.615 0.00 0.00 36.62 2.24
595 648 4.062293 CGTGAGGATGACAACTTTGGTTA 58.938 43.478 0.00 0.00 33.88 2.85
599 652 3.130633 TGACGTGAGGATGACAACTTTG 58.869 45.455 0.00 0.00 0.00 2.77
607 660 6.708502 TGAAAAGTTTAATGACGTGAGGATGA 59.291 34.615 0.00 0.00 0.00 2.92
640 2066 1.470051 AACATATGGCAACCCCGAAC 58.530 50.000 7.80 0.00 35.87 3.95
641 2067 1.821753 CAAACATATGGCAACCCCGAA 59.178 47.619 7.80 0.00 35.87 4.30
643 2069 1.135141 CACAAACATATGGCAACCCCG 60.135 52.381 7.80 0.00 35.87 5.73
708 2135 6.706716 TCTGTTTGGTGACGTAATATTGACAA 59.293 34.615 0.00 0.00 0.00 3.18
719 2146 3.078837 ACAAAACTCTGTTTGGTGACGT 58.921 40.909 2.78 0.00 41.82 4.34
722 2149 3.963129 AGGACAAAACTCTGTTTGGTGA 58.037 40.909 7.80 0.00 41.82 4.02
767 2194 9.362151 ACACCTATTGGAAGAAAATTCTGTTTA 57.638 29.630 0.00 0.00 35.63 2.01
848 2275 2.912967 GCGCTGATCATCTTGTTTTGTG 59.087 45.455 0.00 0.00 0.00 3.33
872 2299 4.261854 GCGGGCACGTAACAATCTTGTT 62.262 50.000 11.45 12.51 45.97 2.83
902 2329 1.148157 CGAGTAAGCGCCACATGGAG 61.148 60.000 2.29 0.00 37.39 3.86
1093 2520 4.116328 CGAAGCCCTGCTCGTCGA 62.116 66.667 4.60 0.00 40.10 4.20
1102 2529 2.604686 TGTGAGCCTCGAAGCCCT 60.605 61.111 1.47 0.00 0.00 5.19
1133 2560 1.602771 GAAGAAGGCCCCGCTAGTT 59.397 57.895 0.00 0.00 0.00 2.24
1271 2698 1.456705 GTCCTCCCTCATCTCGCCT 60.457 63.158 0.00 0.00 0.00 5.52
1327 2754 2.651361 CCCTGAGCTTGTCGTCGT 59.349 61.111 0.00 0.00 0.00 4.34
1376 2803 2.045926 AGCCACCGGAAGATGCAC 60.046 61.111 9.46 0.00 0.00 4.57
1548 2975 9.520204 CCATGTTGATCCTTAATTTGTCAATAC 57.480 33.333 0.00 0.00 32.19 1.89
1645 3072 4.919774 TGGCCTGAAAAGGATGTAAGTA 57.080 40.909 3.32 0.00 0.00 2.24
1646 3073 3.806949 TGGCCTGAAAAGGATGTAAGT 57.193 42.857 3.32 0.00 0.00 2.24
1647 3074 4.706476 TGATTGGCCTGAAAAGGATGTAAG 59.294 41.667 3.32 0.00 0.00 2.34
1648 3075 4.671831 TGATTGGCCTGAAAAGGATGTAA 58.328 39.130 3.32 0.00 0.00 2.41
1704 3131 8.211629 TGCTAATATTCCTCCTTTCCTTAACTC 58.788 37.037 0.00 0.00 0.00 3.01
1779 3207 1.005748 TCGGAGATCGATGGCATGC 60.006 57.895 9.90 9.90 43.74 4.06
1830 3258 0.901124 CTCCCCACTGAAGACTGAGG 59.099 60.000 0.00 0.00 0.00 3.86
1831 3259 0.901124 CCTCCCCACTGAAGACTGAG 59.099 60.000 0.00 0.00 0.00 3.35
1832 3260 0.191064 ACCTCCCCACTGAAGACTGA 59.809 55.000 0.00 0.00 0.00 3.41
1841 3269 1.774217 TTCTTGGCACCTCCCCACT 60.774 57.895 0.00 0.00 30.65 4.00
2147 3575 7.879070 TGCTATGATCTTTGCAGGAAATTATC 58.121 34.615 12.48 0.00 0.00 1.75
2148 3576 7.828508 TGCTATGATCTTTGCAGGAAATTAT 57.171 32.000 12.48 0.00 0.00 1.28
2149 3577 7.286087 ACATGCTATGATCTTTGCAGGAAATTA 59.714 33.333 26.98 4.05 39.19 1.40
2150 3578 6.097839 ACATGCTATGATCTTTGCAGGAAATT 59.902 34.615 26.98 9.58 39.19 1.82
2151 3579 5.597182 ACATGCTATGATCTTTGCAGGAAAT 59.403 36.000 26.98 9.86 39.19 2.17
2152 3580 4.951715 ACATGCTATGATCTTTGCAGGAAA 59.048 37.500 26.98 5.81 39.19 3.13
2223 3651 5.411669 GCAGTGCTTACAAACCAACTATACT 59.588 40.000 8.18 0.00 0.00 2.12
2273 3701 4.198530 TGCACTTCTTCAGTTGAACATGA 58.801 39.130 0.00 0.00 30.92 3.07
2390 3821 3.761752 CCTCCGTTCCAATGTACCATTTT 59.238 43.478 0.00 0.00 0.00 1.82
2392 3823 2.574369 TCCTCCGTTCCAATGTACCATT 59.426 45.455 0.00 0.00 0.00 3.16
2393 3824 2.093128 GTCCTCCGTTCCAATGTACCAT 60.093 50.000 0.00 0.00 0.00 3.55
2407 3849 5.116180 TGAGCAAAATAAGTATGTCCTCCG 58.884 41.667 0.00 0.00 0.00 4.63
2410 3852 8.270744 AGATTCTGAGCAAAATAAGTATGTCCT 58.729 33.333 0.00 0.00 0.00 3.85
2412 3854 9.928236 GAAGATTCTGAGCAAAATAAGTATGTC 57.072 33.333 0.00 0.00 0.00 3.06
2489 3931 6.376864 TCCGAATTCAAATAGCCTGAAAATCA 59.623 34.615 6.22 0.00 36.43 2.57
2518 3961 5.836024 TTAACACTACTCTGGGAAATGGT 57.164 39.130 0.00 0.00 0.00 3.55
2524 3967 3.553508 GCACGTTTAACACTACTCTGGGA 60.554 47.826 0.00 0.00 0.00 4.37
2534 3977 7.377397 TGTTTCTTATGATTGCACGTTTAACAC 59.623 33.333 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.