Multiple sequence alignment - TraesCS4A01G184400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G184400 chr4A 100.000 2641 0 0 1 2641 462308235 462310875 0.000000e+00 4878
1 TraesCS4A01G184400 chr4A 94.028 720 40 3 1 718 183540119 183539401 0.000000e+00 1088
2 TraesCS4A01G184400 chr2B 93.488 906 46 6 916 1816 789950692 789949795 0.000000e+00 1334
3 TraesCS4A01G184400 chr2B 90.184 489 39 4 2151 2638 220963814 220964294 1.730000e-176 628
4 TraesCS4A01G184400 chr2D 93.355 903 50 5 916 1816 645682673 645683567 0.000000e+00 1327
5 TraesCS4A01G184400 chr2D 92.500 160 11 1 682 840 274709747 274709588 7.350000e-56 228
6 TraesCS4A01G184400 chr2D 93.382 136 9 0 2069 2204 274709079 274708944 4.460000e-48 202
7 TraesCS4A01G184400 chr2D 92.647 136 10 0 2069 2204 295069776 295069641 2.070000e-46 196
8 TraesCS4A01G184400 chr2A 93.355 903 50 6 916 1816 771329204 771328310 0.000000e+00 1327
9 TraesCS4A01G184400 chr2A 94.854 719 35 2 1 718 688393374 688394091 0.000000e+00 1122
10 TraesCS4A01G184400 chr6A 94.444 720 36 4 1 718 64368645 64369362 0.000000e+00 1105
11 TraesCS4A01G184400 chr6A 94.101 712 39 3 1 711 146364001 146363292 0.000000e+00 1079
12 TraesCS4A01G184400 chr6A 88.428 579 57 5 2069 2641 330781382 330780808 0.000000e+00 689
13 TraesCS4A01G184400 chr1A 94.329 723 34 3 1 717 287734268 287734989 0.000000e+00 1101
14 TraesCS4A01G184400 chr1A 93.741 719 42 3 1 718 429585359 429586075 0.000000e+00 1075
15 TraesCS4A01G184400 chr1A 93.602 719 44 2 1 718 522788016 522787299 0.000000e+00 1072
16 TraesCS4A01G184400 chr3A 93.741 719 43 2 1 718 601063544 601062827 0.000000e+00 1077
17 TraesCS4A01G184400 chr3A 88.272 162 10 3 2069 2221 606456721 606456560 4.490000e-43 185
18 TraesCS4A01G184400 chr3A 96.000 75 3 0 849 923 606457237 606457163 3.570000e-24 122
19 TraesCS4A01G184400 chr5A 93.620 721 42 3 1 718 656619497 656620216 0.000000e+00 1074
20 TraesCS4A01G184400 chr5B 90.592 574 50 4 2069 2641 308023614 308023044 0.000000e+00 758
21 TraesCS4A01G184400 chr7D 89.217 575 41 8 2069 2641 2413616 2414171 0.000000e+00 699
22 TraesCS4A01G184400 chr7D 89.732 224 6 3 683 889 354527196 354527419 1.200000e-68 270
23 TraesCS4A01G184400 chr7D 93.636 110 6 1 720 828 195395440 195395549 2.100000e-36 163
24 TraesCS4A01G184400 chr7D 97.297 74 2 0 816 889 195395565 195395638 2.760000e-25 126
25 TraesCS4A01G184400 chr3B 92.340 470 33 3 2151 2619 604439282 604438815 0.000000e+00 665
26 TraesCS4A01G184400 chr3B 94.079 152 7 2 705 855 556456604 556456754 2.040000e-56 230
27 TraesCS4A01G184400 chr1B 90.041 492 42 4 2153 2640 354327654 354327166 4.800000e-177 630
28 TraesCS4A01G184400 chr1B 92.913 127 7 2 730 855 127418134 127418259 1.610000e-42 183
29 TraesCS4A01G184400 chr1B 92.958 71 5 0 849 919 127418616 127418686 1.290000e-18 104
30 TraesCS4A01G184400 chr7B 89.655 493 47 4 2151 2641 278776410 278776900 2.230000e-175 625
31 TraesCS4A01G184400 chr6B 88.889 495 49 5 2151 2641 180254064 180253572 2.910000e-169 604
32 TraesCS4A01G184400 chr6B 91.879 431 30 4 2214 2641 425485629 425486057 4.870000e-167 597
33 TraesCS4A01G184400 chr4B 91.477 176 14 1 712 886 141079891 141080066 9.450000e-60 241
34 TraesCS4A01G184400 chr3D 92.105 152 8 4 681 828 368369510 368369359 7.410000e-51 211
35 TraesCS4A01G184400 chr3D 94.118 136 8 0 2069 2204 220383376 220383511 9.580000e-50 207
36 TraesCS4A01G184400 chr3D 90.698 129 10 2 693 820 220382733 220382860 1.260000e-38 171
37 TraesCS4A01G184400 chr4D 94.118 136 8 0 2069 2204 182406958 182407093 9.580000e-50 207
38 TraesCS4A01G184400 chr4D 93.382 136 9 0 2069 2204 153518200 153518065 4.460000e-48 202
39 TraesCS4A01G184400 chr4D 92.029 138 11 0 2069 2206 310939143 310939006 7.460000e-46 195
40 TraesCS4A01G184400 chr4D 91.935 124 8 2 706 828 384432245 384432367 3.490000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G184400 chr4A 462308235 462310875 2640 False 4878 4878 100.000 1 2641 1 chr4A.!!$F1 2640
1 TraesCS4A01G184400 chr4A 183539401 183540119 718 True 1088 1088 94.028 1 718 1 chr4A.!!$R1 717
2 TraesCS4A01G184400 chr2B 789949795 789950692 897 True 1334 1334 93.488 916 1816 1 chr2B.!!$R1 900
3 TraesCS4A01G184400 chr2D 645682673 645683567 894 False 1327 1327 93.355 916 1816 1 chr2D.!!$F1 900
4 TraesCS4A01G184400 chr2D 274708944 274709747 803 True 215 228 92.941 682 2204 2 chr2D.!!$R2 1522
5 TraesCS4A01G184400 chr2A 771328310 771329204 894 True 1327 1327 93.355 916 1816 1 chr2A.!!$R1 900
6 TraesCS4A01G184400 chr2A 688393374 688394091 717 False 1122 1122 94.854 1 718 1 chr2A.!!$F1 717
7 TraesCS4A01G184400 chr6A 64368645 64369362 717 False 1105 1105 94.444 1 718 1 chr6A.!!$F1 717
8 TraesCS4A01G184400 chr6A 146363292 146364001 709 True 1079 1079 94.101 1 711 1 chr6A.!!$R1 710
9 TraesCS4A01G184400 chr6A 330780808 330781382 574 True 689 689 88.428 2069 2641 1 chr6A.!!$R2 572
10 TraesCS4A01G184400 chr1A 287734268 287734989 721 False 1101 1101 94.329 1 717 1 chr1A.!!$F1 716
11 TraesCS4A01G184400 chr1A 429585359 429586075 716 False 1075 1075 93.741 1 718 1 chr1A.!!$F2 717
12 TraesCS4A01G184400 chr1A 522787299 522788016 717 True 1072 1072 93.602 1 718 1 chr1A.!!$R1 717
13 TraesCS4A01G184400 chr3A 601062827 601063544 717 True 1077 1077 93.741 1 718 1 chr3A.!!$R1 717
14 TraesCS4A01G184400 chr5A 656619497 656620216 719 False 1074 1074 93.620 1 718 1 chr5A.!!$F1 717
15 TraesCS4A01G184400 chr5B 308023044 308023614 570 True 758 758 90.592 2069 2641 1 chr5B.!!$R1 572
16 TraesCS4A01G184400 chr7D 2413616 2414171 555 False 699 699 89.217 2069 2641 1 chr7D.!!$F1 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 274 0.874390 TTCATGCAAAGAGTCACGGC 59.126 50.0 0.0 0.0 0.00 5.68 F
1274 1369 0.969894 CTGGTCTCAGGTCGTCCTTT 59.030 55.0 0.0 0.0 43.07 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1317 1612 0.033796 CACTCCATGGTGGCCAGATT 60.034 55.0 17.76 0.0 36.75 2.40 R
2506 2813 0.970640 TGCCAAGGTCACGCTAACTA 59.029 50.0 0.00 0.0 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 9.453572 TGATTTATGAGTGCAGAGAAAATAAGT 57.546 29.630 0.00 0.00 0.00 2.24
121 122 2.024176 AAGCGACGGACTGCATAATT 57.976 45.000 0.00 0.00 0.00 1.40
185 186 2.285834 GCATTAAGACTTCGTGCATCCG 60.286 50.000 15.88 0.00 35.93 4.18
187 188 3.306917 TTAAGACTTCGTGCATCCGAA 57.693 42.857 11.15 11.15 43.96 4.30
227 228 0.900182 TCTGCTTCCCTCTGCGAAGA 60.900 55.000 0.00 0.00 39.29 2.87
273 274 0.874390 TTCATGCAAAGAGTCACGGC 59.126 50.000 0.00 0.00 0.00 5.68
378 384 8.511321 TGGATGTGTGTTTTCATGAACTATTAC 58.489 33.333 7.89 6.07 0.00 1.89
439 445 7.255277 GCAAAACTATAAGCCCCTATCTTTCTG 60.255 40.741 0.00 0.00 0.00 3.02
542 549 5.293079 GTGGACTAGCTGAAAAGCTCTTATG 59.707 44.000 3.00 0.00 45.00 1.90
587 594 8.725405 TGATAAATTGCAATTGCTTCAATGAT 57.275 26.923 29.37 16.97 42.66 2.45
748 756 6.277522 TGGGACTATTTAAAAACCCCCTCTAA 59.722 38.462 15.55 0.00 36.82 2.10
756 764 3.808834 AAACCCCCTCTAAAGTTCCTG 57.191 47.619 0.00 0.00 0.00 3.86
779 787 7.875327 TGAATAAGCTTATTTAGGAACCACC 57.125 36.000 27.96 14.25 33.72 4.61
780 788 7.406916 TGAATAAGCTTATTTAGGAACCACCA 58.593 34.615 27.96 16.26 35.93 4.17
828 836 3.213402 GCTAGCGAGGGAGCGAGT 61.213 66.667 0.00 0.00 41.07 4.18
842 850 2.183046 GAGTGAGCTCGGGTCTGC 59.817 66.667 9.64 0.00 31.39 4.26
844 852 2.125753 GTGAGCTCGGGTCTGCAG 60.126 66.667 7.63 7.63 0.00 4.41
845 853 3.385384 TGAGCTCGGGTCTGCAGG 61.385 66.667 15.13 0.00 0.00 4.85
846 854 4.828925 GAGCTCGGGTCTGCAGGC 62.829 72.222 15.13 13.00 0.00 4.85
850 858 4.100084 TCGGGTCTGCAGGCCATG 62.100 66.667 36.86 27.85 0.00 3.66
862 870 4.828296 GCCATGGCCCAGGAGGTG 62.828 72.222 27.24 0.00 38.26 4.00
864 872 4.828296 CATGGCCCAGGAGGTGGC 62.828 72.222 0.00 0.00 46.45 5.01
875 883 3.721370 GAGGTGGCCGCCATGGATT 62.721 63.158 36.17 15.59 42.00 3.01
876 884 3.219198 GGTGGCCGCCATGGATTC 61.219 66.667 30.93 0.56 42.00 2.52
877 885 3.219198 GTGGCCGCCATGGATTCC 61.219 66.667 18.40 12.62 42.00 3.01
881 889 4.873810 CCGCCATGGATTCCGGCA 62.874 66.667 18.40 0.00 46.60 5.69
883 891 2.807622 GCCATGGATTCCGGCAAC 59.192 61.111 18.40 0.00 45.52 4.17
885 893 2.008268 GCCATGGATTCCGGCAACAG 62.008 60.000 18.40 0.00 45.52 3.16
886 894 1.386525 CCATGGATTCCGGCAACAGG 61.387 60.000 5.56 0.00 0.00 4.00
887 895 1.754234 ATGGATTCCGGCAACAGGC 60.754 57.895 0.00 0.00 43.74 4.85
977 986 2.517402 CGCGCTCTCCTACTCCCT 60.517 66.667 5.56 0.00 0.00 4.20
1023 1032 4.787280 CACCCCCTCTCGCTCCCT 62.787 72.222 0.00 0.00 0.00 4.20
1102 1112 4.974721 CGGCAGTTGCACCCCCTT 62.975 66.667 6.43 0.00 44.36 3.95
1129 1204 2.461695 CCAGTGGAAGCTCTTCTCCTA 58.538 52.381 1.68 0.00 39.45 2.94
1255 1330 2.240500 GCCACGTCCTCATGATCGC 61.241 63.158 12.63 0.00 0.00 4.58
1274 1369 0.969894 CTGGTCTCAGGTCGTCCTTT 59.030 55.000 0.00 0.00 43.07 3.11
1305 1600 4.767255 CCTGCTCCACGGTGCTCC 62.767 72.222 11.14 0.00 35.85 4.70
1317 1612 4.382541 TGCTCCTCCTCCGGCTGA 62.383 66.667 0.00 0.00 0.00 4.26
1371 1666 1.896220 CATGCCGCCCAATATGTACT 58.104 50.000 0.00 0.00 0.00 2.73
1498 1796 2.729491 GTTTGGTGGAAAGCGCGC 60.729 61.111 26.66 26.66 0.00 6.86
1529 1827 0.982852 TCGCAATGTGGGAGGAGGAT 60.983 55.000 0.00 0.00 34.23 3.24
1533 1831 1.561076 CAATGTGGGAGGAGGATGACA 59.439 52.381 0.00 0.00 0.00 3.58
1634 1932 3.529948 TGGTGGGTTCACAGCAATT 57.470 47.368 4.42 0.00 44.88 2.32
1637 1935 1.327303 GTGGGTTCACAGCAATTCCA 58.673 50.000 0.00 0.00 43.13 3.53
1659 1957 0.617413 ACCTGTGAGGCTGATGGAAG 59.383 55.000 0.00 0.00 39.63 3.46
1672 1970 5.516238 GGCTGATGGAAGAAAGATATCCCAT 60.516 44.000 8.23 8.23 37.13 4.00
1715 2013 5.390613 CGCTCAACTAACGATTTTCCATTT 58.609 37.500 0.00 0.00 0.00 2.32
1738 2036 1.077429 GGGACACCCATCTTCTGCC 60.077 63.158 1.54 0.00 44.65 4.85
1739 2037 1.566298 GGGACACCCATCTTCTGCCT 61.566 60.000 1.54 0.00 44.65 4.75
1740 2038 0.107459 GGACACCCATCTTCTGCCTC 60.107 60.000 0.00 0.00 0.00 4.70
1816 2114 6.072286 AGCTTGATGAAATACTTCCAGTTGTG 60.072 38.462 0.00 0.00 0.00 3.33
1817 2115 6.072508 GCTTGATGAAATACTTCCAGTTGTGA 60.073 38.462 0.00 0.00 0.00 3.58
1818 2116 7.522073 GCTTGATGAAATACTTCCAGTTGTGAA 60.522 37.037 0.00 0.00 0.00 3.18
1819 2117 7.439157 TGATGAAATACTTCCAGTTGTGAAG 57.561 36.000 0.00 0.00 43.82 3.02
1820 2118 6.430925 TGATGAAATACTTCCAGTTGTGAAGG 59.569 38.462 5.16 0.00 42.79 3.46
1821 2119 5.690865 TGAAATACTTCCAGTTGTGAAGGT 58.309 37.500 5.16 0.00 42.79 3.50
1822 2120 5.530915 TGAAATACTTCCAGTTGTGAAGGTG 59.469 40.000 5.16 0.00 42.79 4.00
1823 2121 1.680338 ACTTCCAGTTGTGAAGGTGC 58.320 50.000 5.16 0.00 42.79 5.01
1824 2122 0.588252 CTTCCAGTTGTGAAGGTGCG 59.412 55.000 0.00 0.00 36.43 5.34
1825 2123 0.817634 TTCCAGTTGTGAAGGTGCGG 60.818 55.000 0.00 0.00 0.00 5.69
1826 2124 2.639286 CAGTTGTGAAGGTGCGGC 59.361 61.111 0.00 0.00 0.00 6.53
1827 2125 2.972505 AGTTGTGAAGGTGCGGCG 60.973 61.111 0.51 0.51 0.00 6.46
1828 2126 4.025401 GTTGTGAAGGTGCGGCGG 62.025 66.667 9.78 0.00 0.00 6.13
1829 2127 4.243008 TTGTGAAGGTGCGGCGGA 62.243 61.111 9.78 1.34 0.00 5.54
1830 2128 4.680237 TGTGAAGGTGCGGCGGAG 62.680 66.667 9.78 0.00 0.00 4.63
1845 2143 4.905836 GAGCGCGCTCTACTACTC 57.094 61.111 44.82 23.57 39.80 2.59
1846 2144 2.015382 GAGCGCGCTCTACTACTCA 58.985 57.895 44.82 0.00 39.80 3.41
1847 2145 0.316360 GAGCGCGCTCTACTACTCAC 60.316 60.000 44.82 21.94 39.80 3.51
1848 2146 1.025113 AGCGCGCTCTACTACTCACA 61.025 55.000 31.32 0.00 0.00 3.58
1849 2147 0.862283 GCGCGCTCTACTACTCACAC 60.862 60.000 26.67 0.00 0.00 3.82
1850 2148 0.586748 CGCGCTCTACTACTCACACG 60.587 60.000 5.56 0.00 0.00 4.49
1851 2149 0.248134 GCGCTCTACTACTCACACGG 60.248 60.000 0.00 0.00 0.00 4.94
1852 2150 0.377554 CGCTCTACTACTCACACGGG 59.622 60.000 0.00 0.00 0.00 5.28
1853 2151 1.461559 GCTCTACTACTCACACGGGT 58.538 55.000 0.00 0.00 0.00 5.28
1854 2152 1.132643 GCTCTACTACTCACACGGGTG 59.867 57.143 12.84 12.84 46.66 4.61
1855 2153 1.743958 CTCTACTACTCACACGGGTGG 59.256 57.143 19.60 11.37 45.32 4.61
1856 2154 0.172803 CTACTACTCACACGGGTGGC 59.827 60.000 19.60 0.00 45.32 5.01
1857 2155 1.588824 TACTACTCACACGGGTGGCG 61.589 60.000 19.60 12.13 45.32 5.69
1858 2156 4.367023 TACTCACACGGGTGGCGC 62.367 66.667 19.60 0.00 45.32 6.53
1929 2227 4.897856 GACGCTCGCCTCGCTCTC 62.898 72.222 0.00 0.00 0.00 3.20
1932 2230 3.832492 GCTCGCCTCGCTCTCCTT 61.832 66.667 0.00 0.00 0.00 3.36
1933 2231 2.411290 CTCGCCTCGCTCTCCTTC 59.589 66.667 0.00 0.00 0.00 3.46
1934 2232 2.361230 TCGCCTCGCTCTCCTTCA 60.361 61.111 0.00 0.00 0.00 3.02
1935 2233 1.733402 CTCGCCTCGCTCTCCTTCAT 61.733 60.000 0.00 0.00 0.00 2.57
1936 2234 1.299773 CGCCTCGCTCTCCTTCATC 60.300 63.158 0.00 0.00 0.00 2.92
1937 2235 1.068921 GCCTCGCTCTCCTTCATCC 59.931 63.158 0.00 0.00 0.00 3.51
1938 2236 1.361993 CCTCGCTCTCCTTCATCCG 59.638 63.158 0.00 0.00 0.00 4.18
1939 2237 1.299773 CTCGCTCTCCTTCATCCGC 60.300 63.158 0.00 0.00 0.00 5.54
1940 2238 2.279784 CGCTCTCCTTCATCCGCC 60.280 66.667 0.00 0.00 0.00 6.13
1941 2239 2.110006 GCTCTCCTTCATCCGCCC 59.890 66.667 0.00 0.00 0.00 6.13
1942 2240 2.825264 CTCTCCTTCATCCGCCCC 59.175 66.667 0.00 0.00 0.00 5.80
1943 2241 2.768344 TCTCCTTCATCCGCCCCC 60.768 66.667 0.00 0.00 0.00 5.40
1944 2242 4.241555 CTCCTTCATCCGCCCCCG 62.242 72.222 0.00 0.00 0.00 5.73
1967 2265 4.803426 CGCGTCCAGGTGCTCCTC 62.803 72.222 3.81 0.00 43.07 3.71
1968 2266 4.803426 GCGTCCAGGTGCTCCTCG 62.803 72.222 3.81 7.18 43.07 4.63
1969 2267 4.803426 CGTCCAGGTGCTCCTCGC 62.803 72.222 3.81 0.00 43.07 5.03
1970 2268 3.386237 GTCCAGGTGCTCCTCGCT 61.386 66.667 3.81 0.00 43.07 4.93
1971 2269 3.071206 TCCAGGTGCTCCTCGCTC 61.071 66.667 3.81 0.00 43.07 5.03
1972 2270 4.504916 CCAGGTGCTCCTCGCTCG 62.505 72.222 3.81 0.00 43.07 5.03
1973 2271 4.504916 CAGGTGCTCCTCGCTCGG 62.505 72.222 3.81 0.00 43.07 4.63
1980 2278 2.440430 TCCTCGCTCGGGGAGAAG 60.440 66.667 6.82 4.52 43.87 2.85
1981 2279 2.756283 CCTCGCTCGGGGAGAAGT 60.756 66.667 16.08 0.00 43.87 3.01
1982 2280 2.352032 CCTCGCTCGGGGAGAAGTT 61.352 63.158 16.08 0.00 43.87 2.66
1983 2281 1.153745 CTCGCTCGGGGAGAAGTTG 60.154 63.158 10.99 0.00 43.87 3.16
1984 2282 1.878656 CTCGCTCGGGGAGAAGTTGT 61.879 60.000 10.99 0.00 43.87 3.32
1985 2283 1.738099 CGCTCGGGGAGAAGTTGTG 60.738 63.158 0.00 0.00 0.00 3.33
1986 2284 1.376037 GCTCGGGGAGAAGTTGTGG 60.376 63.158 0.00 0.00 0.00 4.17
1987 2285 1.376037 CTCGGGGAGAAGTTGTGGC 60.376 63.158 0.00 0.00 0.00 5.01
1988 2286 1.831652 CTCGGGGAGAAGTTGTGGCT 61.832 60.000 0.00 0.00 0.00 4.75
1989 2287 1.376037 CGGGGAGAAGTTGTGGCTC 60.376 63.158 0.00 0.00 0.00 4.70
1990 2288 1.831652 CGGGGAGAAGTTGTGGCTCT 61.832 60.000 0.00 0.00 0.00 4.09
1991 2289 1.276622 GGGGAGAAGTTGTGGCTCTA 58.723 55.000 0.00 0.00 0.00 2.43
1992 2290 1.066071 GGGGAGAAGTTGTGGCTCTAC 60.066 57.143 0.00 0.00 0.00 2.59
1993 2291 1.623811 GGGAGAAGTTGTGGCTCTACA 59.376 52.381 4.15 0.00 0.00 2.74
1994 2292 2.613223 GGGAGAAGTTGTGGCTCTACAC 60.613 54.545 4.15 0.00 41.68 2.90
1995 2293 2.613223 GGAGAAGTTGTGGCTCTACACC 60.613 54.545 4.15 0.00 40.62 4.16
1996 2294 2.037251 GAGAAGTTGTGGCTCTACACCA 59.963 50.000 4.15 0.00 40.62 4.17
2001 2299 2.656646 TGGCTCTACACCACGCTG 59.343 61.111 0.00 0.00 30.29 5.18
2002 2300 2.815647 GGCTCTACACCACGCTGC 60.816 66.667 0.00 0.00 0.00 5.25
2003 2301 2.262915 GCTCTACACCACGCTGCT 59.737 61.111 0.00 0.00 0.00 4.24
2004 2302 1.807573 GCTCTACACCACGCTGCTC 60.808 63.158 0.00 0.00 0.00 4.26
2005 2303 1.586541 CTCTACACCACGCTGCTCA 59.413 57.895 0.00 0.00 0.00 4.26
2006 2304 0.734253 CTCTACACCACGCTGCTCAC 60.734 60.000 0.00 0.00 0.00 3.51
2007 2305 1.738099 CTACACCACGCTGCTCACC 60.738 63.158 0.00 0.00 0.00 4.02
2008 2306 2.159819 CTACACCACGCTGCTCACCT 62.160 60.000 0.00 0.00 0.00 4.00
2009 2307 2.154798 TACACCACGCTGCTCACCTC 62.155 60.000 0.00 0.00 0.00 3.85
2010 2308 4.363990 ACCACGCTGCTCACCTCG 62.364 66.667 0.00 0.00 0.00 4.63
2015 2313 2.669569 GCTGCTCACCTCGCCAAA 60.670 61.111 0.00 0.00 0.00 3.28
2016 2314 2.684843 GCTGCTCACCTCGCCAAAG 61.685 63.158 0.00 0.00 0.00 2.77
2017 2315 2.669569 TGCTCACCTCGCCAAAGC 60.670 61.111 0.00 0.00 0.00 3.51
2018 2316 3.435186 GCTCACCTCGCCAAAGCC 61.435 66.667 0.00 0.00 34.57 4.35
2019 2317 2.747855 CTCACCTCGCCAAAGCCC 60.748 66.667 0.00 0.00 34.57 5.19
2020 2318 3.551496 CTCACCTCGCCAAAGCCCA 62.551 63.158 0.00 0.00 34.57 5.36
2021 2319 2.597217 CACCTCGCCAAAGCCCAA 60.597 61.111 0.00 0.00 34.57 4.12
2022 2320 2.597510 ACCTCGCCAAAGCCCAAC 60.598 61.111 0.00 0.00 34.57 3.77
2023 2321 3.373565 CCTCGCCAAAGCCCAACC 61.374 66.667 0.00 0.00 34.57 3.77
2024 2322 2.597217 CTCGCCAAAGCCCAACCA 60.597 61.111 0.00 0.00 34.57 3.67
2025 2323 2.597217 TCGCCAAAGCCCAACCAG 60.597 61.111 0.00 0.00 34.57 4.00
2026 2324 3.683937 CGCCAAAGCCCAACCAGG 61.684 66.667 0.00 0.00 34.57 4.45
2027 2325 2.203625 GCCAAAGCCCAACCAGGA 60.204 61.111 0.00 0.00 41.22 3.86
2028 2326 1.836604 GCCAAAGCCCAACCAGGAA 60.837 57.895 0.00 0.00 41.22 3.36
2029 2327 1.820010 GCCAAAGCCCAACCAGGAAG 61.820 60.000 0.00 0.00 41.22 3.46
2030 2328 0.178964 CCAAAGCCCAACCAGGAAGA 60.179 55.000 0.00 0.00 41.22 2.87
2031 2329 0.961753 CAAAGCCCAACCAGGAAGAC 59.038 55.000 0.00 0.00 41.22 3.01
2032 2330 0.555769 AAAGCCCAACCAGGAAGACA 59.444 50.000 0.00 0.00 41.22 3.41
2033 2331 0.779997 AAGCCCAACCAGGAAGACAT 59.220 50.000 0.00 0.00 41.22 3.06
2034 2332 0.038744 AGCCCAACCAGGAAGACATG 59.961 55.000 0.00 0.00 41.22 3.21
2035 2333 1.598701 GCCCAACCAGGAAGACATGC 61.599 60.000 0.00 0.00 41.22 4.06
2036 2334 0.038744 CCCAACCAGGAAGACATGCT 59.961 55.000 0.00 0.00 41.22 3.79
2037 2335 1.171308 CCAACCAGGAAGACATGCTG 58.829 55.000 0.00 0.00 46.32 4.41
2038 2336 0.524862 CAACCAGGAAGACATGCTGC 59.475 55.000 0.00 0.00 45.47 5.25
2039 2337 0.403271 AACCAGGAAGACATGCTGCT 59.597 50.000 0.00 0.00 45.47 4.24
2040 2338 0.035630 ACCAGGAAGACATGCTGCTC 60.036 55.000 0.00 0.00 45.47 4.26
2041 2339 0.252479 CCAGGAAGACATGCTGCTCT 59.748 55.000 0.00 0.00 45.47 4.09
2042 2340 1.483827 CCAGGAAGACATGCTGCTCTA 59.516 52.381 0.00 0.00 45.47 2.43
2043 2341 2.093288 CCAGGAAGACATGCTGCTCTAA 60.093 50.000 0.00 0.00 45.47 2.10
2044 2342 3.196463 CAGGAAGACATGCTGCTCTAAG 58.804 50.000 0.00 0.00 40.83 2.18
2045 2343 3.102972 AGGAAGACATGCTGCTCTAAGA 58.897 45.455 0.00 0.00 0.00 2.10
2046 2344 3.118811 AGGAAGACATGCTGCTCTAAGAC 60.119 47.826 0.00 0.00 0.00 3.01
2047 2345 3.368843 GGAAGACATGCTGCTCTAAGACA 60.369 47.826 0.00 0.00 0.00 3.41
2048 2346 3.523606 AGACATGCTGCTCTAAGACAG 57.476 47.619 0.00 0.00 36.96 3.51
2049 2347 2.830923 AGACATGCTGCTCTAAGACAGT 59.169 45.455 0.00 0.00 36.26 3.55
2050 2348 3.119173 AGACATGCTGCTCTAAGACAGTC 60.119 47.826 0.00 0.00 36.26 3.51
2051 2349 2.564504 ACATGCTGCTCTAAGACAGTCA 59.435 45.455 2.66 0.00 36.26 3.41
2052 2350 3.188492 CATGCTGCTCTAAGACAGTCAG 58.812 50.000 2.66 0.00 36.26 3.51
2053 2351 2.519013 TGCTGCTCTAAGACAGTCAGA 58.481 47.619 2.66 0.00 36.26 3.27
2054 2352 2.230025 TGCTGCTCTAAGACAGTCAGAC 59.770 50.000 2.66 0.00 36.26 3.51
2055 2353 2.491693 GCTGCTCTAAGACAGTCAGACT 59.508 50.000 2.66 0.00 36.26 3.24
2056 2354 3.427503 GCTGCTCTAAGACAGTCAGACTC 60.428 52.174 0.00 0.00 36.26 3.36
2057 2355 3.085533 TGCTCTAAGACAGTCAGACTCC 58.914 50.000 0.00 0.00 0.00 3.85
2058 2356 3.245087 TGCTCTAAGACAGTCAGACTCCT 60.245 47.826 0.00 0.00 0.00 3.69
2059 2357 4.019231 TGCTCTAAGACAGTCAGACTCCTA 60.019 45.833 0.00 0.00 0.00 2.94
2060 2358 4.574828 GCTCTAAGACAGTCAGACTCCTAG 59.425 50.000 0.00 0.00 0.00 3.02
2061 2359 4.519213 TCTAAGACAGTCAGACTCCTAGC 58.481 47.826 0.00 0.00 0.00 3.42
2062 2360 2.137810 AGACAGTCAGACTCCTAGCC 57.862 55.000 0.00 0.00 0.00 3.93
2063 2361 1.356059 AGACAGTCAGACTCCTAGCCA 59.644 52.381 0.00 0.00 0.00 4.75
2064 2362 2.024464 AGACAGTCAGACTCCTAGCCAT 60.024 50.000 0.00 0.00 0.00 4.40
2065 2363 2.763448 GACAGTCAGACTCCTAGCCATT 59.237 50.000 0.00 0.00 0.00 3.16
2066 2364 2.499289 ACAGTCAGACTCCTAGCCATTG 59.501 50.000 0.00 0.00 0.00 2.82
2067 2365 1.484240 AGTCAGACTCCTAGCCATTGC 59.516 52.381 0.00 0.00 37.95 3.56
2103 2401 0.608856 ATTCATGGCAAGCACGACCA 60.609 50.000 0.00 0.00 37.99 4.02
2104 2402 0.608856 TTCATGGCAAGCACGACCAT 60.609 50.000 0.00 0.00 45.08 3.55
2149 2453 1.301716 GTGCTCTCCTCCAACGCAA 60.302 57.895 0.00 0.00 31.77 4.85
2164 2468 7.209471 TCCAACGCAATTAGTGAACTAAAAT 57.791 32.000 6.98 0.00 41.27 1.82
2194 2498 4.627467 AGTTGACTTGTGCTTAGATTAGCG 59.373 41.667 0.00 0.00 44.18 4.26
2195 2499 4.450082 TGACTTGTGCTTAGATTAGCGA 57.550 40.909 0.00 0.00 44.18 4.93
2267 2571 4.919774 TTAGGTGGAGCAGTTAATCCAA 57.080 40.909 0.00 0.00 46.87 3.53
2274 2578 6.183360 GGTGGAGCAGTTAATCCAAGATACTA 60.183 42.308 0.00 0.00 46.87 1.82
2336 2641 9.166173 ACTTAAGTAAACACGGAAGTTAGTTTT 57.834 29.630 6.26 0.00 46.40 2.43
2392 2697 7.305763 GCAACAGTTAACCGTTTCAAAACTATG 60.306 37.037 4.43 0.00 36.77 2.23
2464 2770 2.158593 TGGCAGTTAAGTGGGCAAGTTA 60.159 45.455 12.19 0.00 33.89 2.24
2467 2774 3.756434 GCAGTTAAGTGGGCAAGTTATGA 59.244 43.478 12.19 0.00 0.00 2.15
2470 2777 6.149633 CAGTTAAGTGGGCAAGTTATGAAAC 58.850 40.000 2.05 0.00 35.72 2.78
2506 2813 4.377708 TGCCATGCGCACTCGAGT 62.378 61.111 14.90 13.58 44.64 4.18
2586 2895 6.479001 GTCAAGCAGTTCACTAGTTCTTAACA 59.521 38.462 0.00 0.00 0.00 2.41
2591 2900 4.038883 AGTTCACTAGTTCTTAACAGCCGT 59.961 41.667 0.00 0.00 0.00 5.68
2607 2917 1.468736 GCCGTAGTTCCGACAGTTAGG 60.469 57.143 0.00 0.00 0.00 2.69
2613 2923 6.095377 CGTAGTTCCGACAGTTAGGTATTTT 58.905 40.000 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.690434 CGTATAAAACTTATTTTCTCTGCACTC 57.310 33.333 0.00 0.00 38.91 3.51
70 71 8.038351 TCTTCCACATCACAAGATCGTATAAAA 58.962 33.333 0.00 0.00 30.20 1.52
121 122 3.521531 TGCCACTTGTGATATGGACCTTA 59.478 43.478 1.89 0.00 35.33 2.69
185 186 5.772521 AGGTTGTCATGTGCTTTTATGTTC 58.227 37.500 0.00 0.00 0.00 3.18
187 188 5.048504 CAGAGGTTGTCATGTGCTTTTATGT 60.049 40.000 0.00 0.00 0.00 2.29
245 246 7.063426 CGTGACTCTTTGCATGAAGTATAAGAA 59.937 37.037 0.00 0.00 0.00 2.52
273 274 8.587952 AATGTAAAAAGGAAAGGTGAAAATCG 57.412 30.769 0.00 0.00 0.00 3.34
310 316 6.268387 AGGATCTTTCCAACACATTGTGATTT 59.732 34.615 23.12 5.35 45.30 2.17
313 319 4.520111 CAGGATCTTTCCAACACATTGTGA 59.480 41.667 23.12 0.00 45.30 3.58
360 366 9.114952 TGTCAACAGTAATAGTTCATGAAAACA 57.885 29.630 10.35 0.00 0.00 2.83
439 445 5.064325 GGGTATGAAGTTTTATCGGACACAC 59.936 44.000 0.00 0.00 0.00 3.82
542 549 6.910536 ATCATAACATCGGAAAGAGTCAAC 57.089 37.500 0.00 0.00 0.00 3.18
718 725 4.708421 GGGTTTTTAAATAGTCCCACCCTC 59.292 45.833 4.71 0.00 39.75 4.30
735 742 3.725267 TCAGGAACTTTAGAGGGGGTTTT 59.275 43.478 0.00 0.00 34.60 2.43
748 756 9.975218 TTCCTAAATAAGCTTATTCAGGAACTT 57.025 29.630 38.37 22.46 44.53 2.66
756 764 7.201794 GGTGGTGGTTCCTAAATAAGCTTATTC 60.202 40.741 27.56 15.83 33.23 1.75
775 783 1.064825 AACAGGTTAGGAGGTGGTGG 58.935 55.000 0.00 0.00 0.00 4.61
779 787 4.519350 GGAAAAGAAACAGGTTAGGAGGTG 59.481 45.833 0.00 0.00 0.00 4.00
780 788 4.447325 GGGAAAAGAAACAGGTTAGGAGGT 60.447 45.833 0.00 0.00 0.00 3.85
813 821 1.820056 CTCACTCGCTCCCTCGCTA 60.820 63.158 0.00 0.00 0.00 4.26
816 824 3.137459 AGCTCACTCGCTCCCTCG 61.137 66.667 0.00 0.00 34.57 4.63
828 836 3.385384 CCTGCAGACCCGAGCTCA 61.385 66.667 17.39 0.00 0.00 4.26
845 853 4.828296 CACCTCCTGGGCCATGGC 62.828 72.222 29.47 29.47 39.10 4.40
846 854 4.133373 CCACCTCCTGGGCCATGG 62.133 72.222 6.72 7.63 39.10 3.66
847 855 4.828296 GCCACCTCCTGGGCCATG 62.828 72.222 6.72 4.00 44.53 3.66
857 865 3.721370 AATCCATGGCGGCCACCTC 62.721 63.158 26.48 0.00 35.80 3.85
859 867 3.219198 GAATCCATGGCGGCCACC 61.219 66.667 26.48 1.63 35.80 4.61
860 868 3.219198 GGAATCCATGGCGGCCAC 61.219 66.667 26.48 10.37 35.80 5.01
867 875 1.386525 CCTGTTGCCGGAATCCATGG 61.387 60.000 5.05 4.97 0.00 3.66
868 876 2.008268 GCCTGTTGCCGGAATCCATG 62.008 60.000 5.05 0.00 0.00 3.66
870 878 2.361104 GCCTGTTGCCGGAATCCA 60.361 61.111 5.05 0.00 0.00 3.41
899 907 3.787001 GAGAGGGAAGGCACGGGG 61.787 72.222 0.00 0.00 0.00 5.73
900 908 3.787001 GGAGAGGGAAGGCACGGG 61.787 72.222 0.00 0.00 0.00 5.28
901 909 2.685380 AGGAGAGGGAAGGCACGG 60.685 66.667 0.00 0.00 0.00 4.94
902 910 2.896443 GAGGAGAGGGAAGGCACG 59.104 66.667 0.00 0.00 0.00 5.34
903 911 2.896443 CGAGGAGAGGGAAGGCAC 59.104 66.667 0.00 0.00 0.00 5.01
904 912 3.077556 GCGAGGAGAGGGAAGGCA 61.078 66.667 0.00 0.00 0.00 4.75
905 913 4.214327 CGCGAGGAGAGGGAAGGC 62.214 72.222 0.00 0.00 0.00 4.35
977 986 1.612146 TTGCCAGATCCCTCGGACA 60.612 57.895 0.00 0.00 32.98 4.02
1184 1259 2.404923 TGAGGATCTCGAAGACGTCT 57.595 50.000 13.58 13.58 40.69 4.18
1255 1330 4.425099 AGGACGACCTGAGACCAG 57.575 61.111 5.39 0.00 45.92 4.00
1317 1612 0.033796 CACTCCATGGTGGCCAGATT 60.034 55.000 17.76 0.00 36.75 2.40
1371 1666 2.281970 CAGGCCAGTGAAGCAGCA 60.282 61.111 5.01 0.00 0.00 4.41
1434 1732 2.100087 CCTTTACCTTGTTGTTGCCGTT 59.900 45.455 0.00 0.00 0.00 4.44
1435 1733 1.679153 CCTTTACCTTGTTGTTGCCGT 59.321 47.619 0.00 0.00 0.00 5.68
1511 1809 0.816825 CATCCTCCTCCCACATTGCG 60.817 60.000 0.00 0.00 0.00 4.85
1529 1827 3.094062 GCCGCTGCTCCCTATGTCA 62.094 63.158 0.00 0.00 33.53 3.58
1553 1851 1.465188 ACCATCCACCCAGTCCCAA 60.465 57.895 0.00 0.00 0.00 4.12
1602 1900 1.238439 CCACCATCGAACACAAAGCT 58.762 50.000 0.00 0.00 0.00 3.74
1634 1932 0.545071 TCAGCCTCACAGGTCATGGA 60.545 55.000 0.00 0.00 37.80 3.41
1637 1935 0.545171 CCATCAGCCTCACAGGTCAT 59.455 55.000 0.00 0.00 37.80 3.06
1672 1970 2.343101 GCATTTAGTCACGCACCAGTA 58.657 47.619 0.00 0.00 0.00 2.74
1733 2031 5.605908 AGATATCAATTCCTCTTGAGGCAGA 59.394 40.000 11.61 7.10 38.47 4.26
1738 2036 8.591940 TGTATGGAGATATCAATTCCTCTTGAG 58.408 37.037 5.32 0.00 38.47 3.02
1739 2037 8.496534 TGTATGGAGATATCAATTCCTCTTGA 57.503 34.615 5.32 0.00 39.35 3.02
1740 2038 9.736414 AATGTATGGAGATATCAATTCCTCTTG 57.264 33.333 5.32 0.00 32.12 3.02
1828 2126 0.316360 GTGAGTAGTAGAGCGCGCTC 60.316 60.000 45.46 45.46 43.03 5.03
1829 2127 1.025113 TGTGAGTAGTAGAGCGCGCT 61.025 55.000 37.28 37.28 0.00 5.92
1830 2128 0.862283 GTGTGAGTAGTAGAGCGCGC 60.862 60.000 26.66 26.66 0.00 6.86
1831 2129 0.586748 CGTGTGAGTAGTAGAGCGCG 60.587 60.000 0.00 0.00 0.00 6.86
1832 2130 0.248134 CCGTGTGAGTAGTAGAGCGC 60.248 60.000 0.00 0.00 0.00 5.92
1833 2131 0.377554 CCCGTGTGAGTAGTAGAGCG 59.622 60.000 0.00 0.00 0.00 5.03
1834 2132 1.132643 CACCCGTGTGAGTAGTAGAGC 59.867 57.143 0.00 0.00 45.76 4.09
1835 2133 1.743958 CCACCCGTGTGAGTAGTAGAG 59.256 57.143 0.00 0.00 45.76 2.43
1836 2134 1.830279 CCACCCGTGTGAGTAGTAGA 58.170 55.000 0.00 0.00 45.76 2.59
1837 2135 0.172803 GCCACCCGTGTGAGTAGTAG 59.827 60.000 0.00 0.00 45.76 2.57
1838 2136 1.588824 CGCCACCCGTGTGAGTAGTA 61.589 60.000 0.00 0.00 45.76 1.82
1839 2137 2.927580 CGCCACCCGTGTGAGTAGT 61.928 63.158 0.00 0.00 45.76 2.73
1840 2138 2.126071 CGCCACCCGTGTGAGTAG 60.126 66.667 0.00 0.00 45.76 2.57
1841 2139 4.367023 GCGCCACCCGTGTGAGTA 62.367 66.667 0.00 0.00 45.76 2.59
1912 2210 4.897856 GAGAGCGAGGCGAGCGTC 62.898 72.222 7.62 7.62 40.04 5.19
1915 2213 3.766496 GAAGGAGAGCGAGGCGAGC 62.766 68.421 0.00 0.00 0.00 5.03
1916 2214 1.733402 ATGAAGGAGAGCGAGGCGAG 61.733 60.000 0.00 0.00 0.00 5.03
1917 2215 1.729470 GATGAAGGAGAGCGAGGCGA 61.729 60.000 0.00 0.00 0.00 5.54
1918 2216 1.299773 GATGAAGGAGAGCGAGGCG 60.300 63.158 0.00 0.00 0.00 5.52
1919 2217 1.068921 GGATGAAGGAGAGCGAGGC 59.931 63.158 0.00 0.00 0.00 4.70
1920 2218 1.361993 CGGATGAAGGAGAGCGAGG 59.638 63.158 0.00 0.00 0.00 4.63
1921 2219 1.299773 GCGGATGAAGGAGAGCGAG 60.300 63.158 0.00 0.00 0.00 5.03
1922 2220 2.786495 GGCGGATGAAGGAGAGCGA 61.786 63.158 0.00 0.00 0.00 4.93
1923 2221 2.279784 GGCGGATGAAGGAGAGCG 60.280 66.667 0.00 0.00 0.00 5.03
1924 2222 2.110006 GGGCGGATGAAGGAGAGC 59.890 66.667 0.00 0.00 0.00 4.09
1925 2223 2.812619 GGGGGCGGATGAAGGAGAG 61.813 68.421 0.00 0.00 0.00 3.20
1926 2224 2.768344 GGGGGCGGATGAAGGAGA 60.768 66.667 0.00 0.00 0.00 3.71
1927 2225 4.241555 CGGGGGCGGATGAAGGAG 62.242 72.222 0.00 0.00 0.00 3.69
1963 2261 2.440430 CTTCTCCCCGAGCGAGGA 60.440 66.667 1.91 0.00 0.00 3.71
1964 2262 2.352032 AACTTCTCCCCGAGCGAGG 61.352 63.158 0.00 0.00 0.00 4.63
1965 2263 1.153745 CAACTTCTCCCCGAGCGAG 60.154 63.158 0.00 0.00 0.00 5.03
1966 2264 1.906824 ACAACTTCTCCCCGAGCGA 60.907 57.895 0.00 0.00 0.00 4.93
1967 2265 1.738099 CACAACTTCTCCCCGAGCG 60.738 63.158 0.00 0.00 0.00 5.03
1968 2266 1.376037 CCACAACTTCTCCCCGAGC 60.376 63.158 0.00 0.00 0.00 5.03
1969 2267 1.376037 GCCACAACTTCTCCCCGAG 60.376 63.158 0.00 0.00 0.00 4.63
1970 2268 1.827399 GAGCCACAACTTCTCCCCGA 61.827 60.000 0.00 0.00 0.00 5.14
1971 2269 1.376037 GAGCCACAACTTCTCCCCG 60.376 63.158 0.00 0.00 0.00 5.73
1972 2270 1.066071 GTAGAGCCACAACTTCTCCCC 60.066 57.143 0.00 0.00 0.00 4.81
1973 2271 1.623811 TGTAGAGCCACAACTTCTCCC 59.376 52.381 0.00 0.00 0.00 4.30
1974 2272 2.613223 GGTGTAGAGCCACAACTTCTCC 60.613 54.545 0.00 0.00 37.06 3.71
1975 2273 2.037251 TGGTGTAGAGCCACAACTTCTC 59.963 50.000 1.07 0.00 37.03 2.87
1976 2274 2.047061 TGGTGTAGAGCCACAACTTCT 58.953 47.619 1.07 0.00 37.03 2.85
1977 2275 2.543777 TGGTGTAGAGCCACAACTTC 57.456 50.000 1.07 0.00 37.03 3.01
1984 2282 2.656646 CAGCGTGGTGTAGAGCCA 59.343 61.111 0.00 0.00 0.00 4.75
1985 2283 2.815647 GCAGCGTGGTGTAGAGCC 60.816 66.667 0.64 0.00 0.00 4.70
1986 2284 1.807573 GAGCAGCGTGGTGTAGAGC 60.808 63.158 0.64 0.00 0.00 4.09
1987 2285 0.734253 GTGAGCAGCGTGGTGTAGAG 60.734 60.000 0.64 0.00 0.00 2.43
1988 2286 1.289066 GTGAGCAGCGTGGTGTAGA 59.711 57.895 0.64 0.00 0.00 2.59
1989 2287 1.738099 GGTGAGCAGCGTGGTGTAG 60.738 63.158 0.64 0.00 0.00 2.74
1990 2288 2.154798 GAGGTGAGCAGCGTGGTGTA 62.155 60.000 0.64 0.00 0.00 2.90
1991 2289 3.521529 GAGGTGAGCAGCGTGGTGT 62.522 63.158 0.64 0.00 0.00 4.16
1992 2290 2.740055 GAGGTGAGCAGCGTGGTG 60.740 66.667 0.00 0.00 0.00 4.17
1993 2291 4.363990 CGAGGTGAGCAGCGTGGT 62.364 66.667 0.00 0.00 0.00 4.16
1998 2296 2.669569 TTTGGCGAGGTGAGCAGC 60.670 61.111 0.00 0.00 36.08 5.25
1999 2297 2.684843 GCTTTGGCGAGGTGAGCAG 61.685 63.158 0.00 0.00 36.08 4.24
2000 2298 2.669569 GCTTTGGCGAGGTGAGCA 60.670 61.111 0.00 0.00 36.08 4.26
2001 2299 3.435186 GGCTTTGGCGAGGTGAGC 61.435 66.667 0.00 0.00 39.81 4.26
2002 2300 2.747855 GGGCTTTGGCGAGGTGAG 60.748 66.667 0.00 0.00 39.81 3.51
2003 2301 3.126703 TTGGGCTTTGGCGAGGTGA 62.127 57.895 0.00 0.00 39.81 4.02
2004 2302 2.597217 TTGGGCTTTGGCGAGGTG 60.597 61.111 0.00 0.00 39.81 4.00
2005 2303 2.597510 GTTGGGCTTTGGCGAGGT 60.598 61.111 0.00 0.00 39.81 3.85
2006 2304 3.373565 GGTTGGGCTTTGGCGAGG 61.374 66.667 0.00 0.00 39.81 4.63
2007 2305 2.597217 TGGTTGGGCTTTGGCGAG 60.597 61.111 0.00 0.00 39.81 5.03
2008 2306 2.597217 CTGGTTGGGCTTTGGCGA 60.597 61.111 0.00 0.00 39.81 5.54
2009 2307 3.683937 CCTGGTTGGGCTTTGGCG 61.684 66.667 0.00 0.00 39.81 5.69
2010 2308 1.820010 CTTCCTGGTTGGGCTTTGGC 61.820 60.000 0.00 0.00 36.20 4.52
2011 2309 0.178964 TCTTCCTGGTTGGGCTTTGG 60.179 55.000 0.00 0.00 36.20 3.28
2012 2310 0.961753 GTCTTCCTGGTTGGGCTTTG 59.038 55.000 0.00 0.00 36.20 2.77
2013 2311 0.555769 TGTCTTCCTGGTTGGGCTTT 59.444 50.000 0.00 0.00 36.20 3.51
2014 2312 0.779997 ATGTCTTCCTGGTTGGGCTT 59.220 50.000 0.00 0.00 36.20 4.35
2015 2313 0.038744 CATGTCTTCCTGGTTGGGCT 59.961 55.000 0.00 0.00 36.20 5.19
2016 2314 1.598701 GCATGTCTTCCTGGTTGGGC 61.599 60.000 0.00 0.00 36.20 5.36
2017 2315 0.038744 AGCATGTCTTCCTGGTTGGG 59.961 55.000 0.00 0.00 36.20 4.12
2018 2316 1.171308 CAGCATGTCTTCCTGGTTGG 58.829 55.000 0.00 0.00 37.10 3.77
2019 2317 0.524862 GCAGCATGTCTTCCTGGTTG 59.475 55.000 0.00 0.00 39.31 3.77
2020 2318 0.403271 AGCAGCATGTCTTCCTGGTT 59.597 50.000 0.00 0.00 39.31 3.67
2021 2319 0.035630 GAGCAGCATGTCTTCCTGGT 60.036 55.000 0.00 2.20 39.73 4.00
2022 2320 0.252479 AGAGCAGCATGTCTTCCTGG 59.748 55.000 0.00 0.00 39.31 4.45
2023 2321 2.975732 TAGAGCAGCATGTCTTCCTG 57.024 50.000 0.00 0.00 39.31 3.86
2024 2322 3.102972 TCTTAGAGCAGCATGTCTTCCT 58.897 45.455 0.00 0.00 39.31 3.36
2025 2323 3.194062 GTCTTAGAGCAGCATGTCTTCC 58.806 50.000 0.00 0.00 39.31 3.46
2026 2324 3.854666 TGTCTTAGAGCAGCATGTCTTC 58.145 45.455 0.00 0.00 39.31 2.87
2027 2325 3.260380 ACTGTCTTAGAGCAGCATGTCTT 59.740 43.478 10.26 0.00 39.31 3.01
2028 2326 2.830923 ACTGTCTTAGAGCAGCATGTCT 59.169 45.455 10.26 0.00 39.31 3.41
2029 2327 3.186119 GACTGTCTTAGAGCAGCATGTC 58.814 50.000 0.00 0.00 39.31 3.06
2030 2328 2.564504 TGACTGTCTTAGAGCAGCATGT 59.435 45.455 9.51 0.00 39.31 3.21
2031 2329 3.119209 TCTGACTGTCTTAGAGCAGCATG 60.119 47.826 9.51 0.00 36.26 4.06
2032 2330 3.095332 TCTGACTGTCTTAGAGCAGCAT 58.905 45.455 9.51 0.00 36.26 3.79
2033 2331 2.230025 GTCTGACTGTCTTAGAGCAGCA 59.770 50.000 9.51 8.86 36.26 4.41
2034 2332 2.491693 AGTCTGACTGTCTTAGAGCAGC 59.508 50.000 10.00 0.00 36.26 5.25
2035 2333 3.128589 GGAGTCTGACTGTCTTAGAGCAG 59.871 52.174 16.28 9.23 38.58 4.24
2036 2334 3.085533 GGAGTCTGACTGTCTTAGAGCA 58.914 50.000 16.28 0.00 0.00 4.26
2037 2335 3.352648 AGGAGTCTGACTGTCTTAGAGC 58.647 50.000 16.28 0.00 0.00 4.09
2038 2336 4.574828 GCTAGGAGTCTGACTGTCTTAGAG 59.425 50.000 16.28 8.02 0.00 2.43
2039 2337 4.519213 GCTAGGAGTCTGACTGTCTTAGA 58.481 47.826 16.28 1.54 0.00 2.10
2040 2338 3.630312 GGCTAGGAGTCTGACTGTCTTAG 59.370 52.174 16.28 12.43 0.00 2.18
2041 2339 3.010250 TGGCTAGGAGTCTGACTGTCTTA 59.990 47.826 16.28 2.11 0.00 2.10
2042 2340 2.225142 TGGCTAGGAGTCTGACTGTCTT 60.225 50.000 16.28 0.90 0.00 3.01
2043 2341 1.356059 TGGCTAGGAGTCTGACTGTCT 59.644 52.381 16.28 14.10 0.00 3.41
2044 2342 1.840737 TGGCTAGGAGTCTGACTGTC 58.159 55.000 16.28 7.31 0.00 3.51
2045 2343 2.499289 CAATGGCTAGGAGTCTGACTGT 59.501 50.000 16.28 4.79 0.00 3.55
2046 2344 2.741228 GCAATGGCTAGGAGTCTGACTG 60.741 54.545 16.28 1.55 36.96 3.51
2047 2345 1.484240 GCAATGGCTAGGAGTCTGACT 59.516 52.381 10.66 10.66 36.96 3.41
2048 2346 1.474143 GGCAATGGCTAGGAGTCTGAC 60.474 57.143 0.00 0.00 40.87 3.51
2049 2347 0.833287 GGCAATGGCTAGGAGTCTGA 59.167 55.000 0.00 0.00 40.87 3.27
2050 2348 0.531532 CGGCAATGGCTAGGAGTCTG 60.532 60.000 5.02 0.00 40.87 3.51
2051 2349 1.690219 CCGGCAATGGCTAGGAGTCT 61.690 60.000 5.02 0.00 39.15 3.24
2052 2350 1.227674 CCGGCAATGGCTAGGAGTC 60.228 63.158 5.02 0.00 39.15 3.36
2053 2351 2.911143 CCGGCAATGGCTAGGAGT 59.089 61.111 5.02 0.00 39.15 3.85
2103 2401 4.158764 GGATAGCTGCGTTGGAGTAGATAT 59.841 45.833 0.00 0.00 37.95 1.63
2104 2402 3.506455 GGATAGCTGCGTTGGAGTAGATA 59.494 47.826 0.00 0.00 0.00 1.98
2164 2468 2.917933 AGCACAAGTCAACTGCTACAA 58.082 42.857 0.00 0.00 39.52 2.41
2211 2515 9.363763 GTAACTTCTAAAGAAACTAACGGCTAT 57.636 33.333 0.00 0.00 33.07 2.97
2336 2641 3.062909 GCACTTAACTGACACGTCACAAA 59.937 43.478 0.00 0.00 35.46 2.83
2467 2774 8.254508 TGGCAATTAAGTGTTCAAGTTAAGTTT 58.745 29.630 4.65 0.00 37.15 2.66
2470 2777 7.148755 GCATGGCAATTAAGTGTTCAAGTTAAG 60.149 37.037 4.65 0.00 37.15 1.85
2506 2813 0.970640 TGCCAAGGTCACGCTAACTA 59.029 50.000 0.00 0.00 0.00 2.24
2586 2895 1.471684 CTAACTGTCGGAACTACGGCT 59.528 52.381 0.00 0.00 39.61 5.52
2591 2900 7.631377 GCCTAAAATACCTAACTGTCGGAACTA 60.631 40.741 3.45 0.00 0.00 2.24
2607 2917 1.404035 CAACTGCGGGGCCTAAAATAC 59.596 52.381 0.84 0.00 0.00 1.89
2613 2923 2.305607 ATTCCAACTGCGGGGCCTA 61.306 57.895 0.84 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.