Multiple sequence alignment - TraesCS4A01G184200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G184200 chr4A 100.000 2960 0 0 1 2960 462220266 462217307 0.000000e+00 5467.0
1 TraesCS4A01G184200 chr4A 100.000 1420 0 0 3347 4766 462216920 462215501 0.000000e+00 2623.0
2 TraesCS4A01G184200 chr4B 94.908 2219 91 9 757 2960 175536733 175538944 0.000000e+00 3452.0
3 TraesCS4A01G184200 chr4B 96.193 1392 41 6 3378 4766 175539265 175540647 0.000000e+00 2266.0
4 TraesCS4A01G184200 chr4B 79.287 449 33 18 2 420 175475748 175476166 4.730000e-65 259.0
5 TraesCS4A01G184200 chr4D 93.739 2252 82 19 744 2960 115047836 115050063 0.000000e+00 3323.0
6 TraesCS4A01G184200 chr4D 95.980 1393 38 8 3378 4766 115050147 115051525 0.000000e+00 2246.0
7 TraesCS4A01G184200 chr4D 94.419 430 12 6 1 420 115047301 115047728 0.000000e+00 651.0
8 TraesCS4A01G184200 chr2B 92.997 357 24 1 932 1288 275457918 275457563 1.970000e-143 520.0
9 TraesCS4A01G184200 chr2B 85.780 218 24 5 500 711 155943166 155942950 1.730000e-54 224.0
10 TraesCS4A01G184200 chr6B 95.669 254 11 0 1035 1288 651366685 651366432 4.440000e-110 409.0
11 TraesCS4A01G184200 chr6B 94.882 254 13 0 1035 1288 76227831 76227578 9.610000e-107 398.0
12 TraesCS4A01G184200 chr6B 94.094 254 15 0 1035 1288 671657596 671657849 2.080000e-103 387.0
13 TraesCS4A01G184200 chr3B 94.882 254 13 0 1035 1288 748485473 748485726 9.610000e-107 398.0
14 TraesCS4A01G184200 chr3B 97.368 38 1 0 932 969 748485436 748485473 1.110000e-06 65.8
15 TraesCS4A01G184200 chr5B 93.725 255 14 2 1035 1288 25482881 25483134 9.680000e-102 381.0
16 TraesCS4A01G184200 chr5B 85.253 217 27 3 500 711 698451455 698451671 8.030000e-53 219.0
17 TraesCS4A01G184200 chr5B 97.541 122 3 0 1035 1156 661259593 661259714 4.830000e-50 209.0
18 TraesCS4A01G184200 chr5B 97.368 38 1 0 932 969 25482844 25482881 1.110000e-06 65.8
19 TraesCS4A01G184200 chr1B 85.253 217 27 3 500 711 664955991 664955775 8.030000e-53 219.0
20 TraesCS4A01G184200 chr1B 84.404 218 28 4 500 711 58568114 58567897 4.830000e-50 209.0
21 TraesCS4A01G184200 chr7B 84.793 217 28 3 500 711 461245954 461245738 3.740000e-51 213.0
22 TraesCS4A01G184200 chr3A 84.305 223 29 4 502 718 588838792 588838570 3.740000e-51 213.0
23 TraesCS4A01G184200 chr3A 84.722 216 27 4 502 711 713416634 713416849 1.340000e-50 211.0
24 TraesCS4A01G184200 chr7A 84.579 214 28 3 502 710 673004231 673004444 1.740000e-49 207.0
25 TraesCS4A01G184200 chr2A 84.259 216 29 3 500 710 1501852 1502067 6.250000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G184200 chr4A 462215501 462220266 4765 True 4045.000000 5467 100.000000 1 4766 2 chr4A.!!$R1 4765
1 TraesCS4A01G184200 chr4B 175536733 175540647 3914 False 2859.000000 3452 95.550500 757 4766 2 chr4B.!!$F2 4009
2 TraesCS4A01G184200 chr4D 115047301 115051525 4224 False 2073.333333 3323 94.712667 1 4766 3 chr4D.!!$F1 4765

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
581 632 0.039437 ACGCCTACAGTGACTTCGTG 60.039 55.000 0.00 0.00 0.00 4.35 F
655 706 0.093875 TGTGTGCGCGCGTTTATAAG 59.906 50.000 32.35 0.04 0.00 1.73 F
659 710 0.179116 TGCGCGCGTTTATAAGGGTA 60.179 50.000 32.35 0.00 0.00 3.69 F
684 735 0.511221 ATGCGCGTTTATATGACCGC 59.489 50.000 8.43 0.00 42.53 5.68 F
685 736 0.528901 TGCGCGTTTATATGACCGCT 60.529 50.000 8.43 0.00 43.70 5.52 F
686 737 0.580104 GCGCGTTTATATGACCGCTT 59.420 50.000 8.43 0.00 43.70 4.68 F
727 778 0.680921 AAATGTCCCAGTGATGCCCG 60.681 55.000 0.00 0.00 0.00 6.13 F
1777 1854 1.000060 TGCTTCATTGCTTGAACAGGC 60.000 47.619 2.02 2.02 39.44 4.85 F
2617 2704 1.090052 GGAGAAGCCCCGTTCATTCG 61.090 60.000 0.00 0.00 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1760 1829 0.968405 GGGCCTGTTCAAGCAATGAA 59.032 50.000 0.84 1.23 45.71 2.57 R
2598 2685 1.090052 CGAATGAACGGGGCTTCTCC 61.090 60.000 0.00 0.00 0.00 3.71 R
2605 2692 2.373540 TGAAGTACGAATGAACGGGG 57.626 50.000 0.00 0.00 37.61 5.73 R
2617 2704 6.338146 TGCATGTCAGTAGGTAATGAAGTAC 58.662 40.000 0.00 0.00 31.64 2.73 R
2634 2721 8.207039 GAATCATGAATTCAGGACATGCATGTC 61.207 40.741 39.96 39.96 46.73 3.06 R
2697 2784 5.413833 CAGTGTCCTGAGTAATCAGCAAAAT 59.586 40.000 14.68 0.00 41.50 1.82 R
2810 2910 2.349817 CGCTTCATTATCATTCACGGCC 60.350 50.000 0.00 0.00 0.00 6.13 R
3617 3732 1.372499 GCAACCGTGTGACGAGCTA 60.372 57.895 0.00 0.00 46.05 3.32 R
4133 4251 0.175073 CCCCGAAGAAGAACCCGTAG 59.825 60.000 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 6.799296 GATGTAATCCTGTCCAGTGTTTGGTA 60.799 42.308 0.00 0.00 42.08 3.25
319 324 8.931775 GTGTAAATTTTGAGGTTTCACAGTTTT 58.068 29.630 0.00 0.00 29.39 2.43
323 328 5.379732 TTTGAGGTTTCACAGTTTTTCGT 57.620 34.783 0.00 0.00 31.71 3.85
349 355 9.157104 TGAATACGCAAAATTCTGTGTATCTTA 57.843 29.630 16.28 5.63 47.00 2.10
351 357 6.795098 ACGCAAAATTCTGTGTATCTTACA 57.205 33.333 0.00 0.00 38.25 2.41
394 405 8.944138 TGTGTATTTTCCCATTGATATAGGAGA 58.056 33.333 0.00 0.00 0.00 3.71
420 431 4.383770 CGGAGGTTTACACACTTGGGATAT 60.384 45.833 0.00 0.00 0.00 1.63
422 433 5.497474 GAGGTTTACACACTTGGGATATGT 58.503 41.667 0.00 0.00 0.00 2.29
423 434 5.887754 AGGTTTACACACTTGGGATATGTT 58.112 37.500 0.00 0.00 0.00 2.71
424 435 6.311735 AGGTTTACACACTTGGGATATGTTT 58.688 36.000 0.00 0.00 0.00 2.83
425 436 6.780522 AGGTTTACACACTTGGGATATGTTTT 59.219 34.615 0.00 0.00 0.00 2.43
426 437 7.289084 AGGTTTACACACTTGGGATATGTTTTT 59.711 33.333 0.00 0.00 0.00 1.94
447 458 5.766150 TTTTTGAGACATACACACTTGGG 57.234 39.130 0.00 0.00 0.00 4.12
448 459 4.698201 TTTGAGACATACACACTTGGGA 57.302 40.909 0.00 0.00 0.00 4.37
452 463 4.142249 TGAGACATACACACTTGGGATACG 60.142 45.833 0.00 0.00 37.60 3.06
457 468 3.308438 ACACACTTGGGATACGTACAC 57.692 47.619 0.00 0.00 37.60 2.90
458 469 2.256174 CACACTTGGGATACGTACACG 58.744 52.381 0.00 0.00 46.33 4.49
476 487 6.089820 CGTACACGTACAAATGGAATAACTGT 59.910 38.462 8.02 0.00 35.87 3.55
491 542 2.831685 ACTGTAAGCATCAACGTCCA 57.168 45.000 0.00 0.00 37.60 4.02
492 543 2.688507 ACTGTAAGCATCAACGTCCAG 58.311 47.619 0.00 0.00 37.60 3.86
493 544 1.394917 CTGTAAGCATCAACGTCCAGC 59.605 52.381 0.00 0.00 0.00 4.85
495 546 0.245266 TAAGCATCAACGTCCAGCGA 59.755 50.000 0.00 0.00 44.77 4.93
496 547 0.391661 AAGCATCAACGTCCAGCGAT 60.392 50.000 0.00 0.00 44.77 4.58
497 548 1.086067 AGCATCAACGTCCAGCGATG 61.086 55.000 0.00 0.00 44.77 3.84
500 551 2.593468 ATCAACGTCCAGCGATGGGG 62.593 60.000 21.53 14.79 42.53 4.96
501 552 3.000819 AACGTCCAGCGATGGGGA 61.001 61.111 21.53 0.00 44.77 4.81
502 553 2.367202 AACGTCCAGCGATGGGGAT 61.367 57.895 21.53 4.15 44.77 3.85
504 555 1.153168 CGTCCAGCGATGGGGATTT 60.153 57.895 21.53 0.00 44.77 2.17
505 556 0.105964 CGTCCAGCGATGGGGATTTA 59.894 55.000 21.53 0.00 44.77 1.40
510 561 3.117701 TCCAGCGATGGGGATTTATTTCA 60.118 43.478 21.53 0.00 0.00 2.69
511 562 3.254166 CCAGCGATGGGGATTTATTTCAG 59.746 47.826 13.14 0.00 0.00 3.02
512 563 3.254166 CAGCGATGGGGATTTATTTCAGG 59.746 47.826 0.00 0.00 0.00 3.86
514 565 4.082125 GCGATGGGGATTTATTTCAGGAT 58.918 43.478 0.00 0.00 0.00 3.24
515 566 4.524328 GCGATGGGGATTTATTTCAGGATT 59.476 41.667 0.00 0.00 0.00 3.01
516 567 5.011023 GCGATGGGGATTTATTTCAGGATTT 59.989 40.000 0.00 0.00 0.00 2.17
517 568 6.681777 CGATGGGGATTTATTTCAGGATTTC 58.318 40.000 0.00 0.00 0.00 2.17
518 569 6.294731 CGATGGGGATTTATTTCAGGATTTCC 60.295 42.308 0.00 0.00 0.00 3.13
528 579 2.785868 AGGATTTCCTGCGATGTGC 58.214 52.632 0.00 0.00 46.55 4.57
538 589 3.723347 GCGATGTGCATTCGATGAG 57.277 52.632 21.69 0.00 45.45 2.90
539 590 0.234106 GCGATGTGCATTCGATGAGG 59.766 55.000 21.69 0.00 45.45 3.86
540 591 1.856802 CGATGTGCATTCGATGAGGA 58.143 50.000 14.71 0.00 0.00 3.71
541 592 1.791204 CGATGTGCATTCGATGAGGAG 59.209 52.381 14.71 0.00 0.00 3.69
542 593 2.544486 CGATGTGCATTCGATGAGGAGA 60.544 50.000 14.71 0.00 0.00 3.71
543 594 2.299993 TGTGCATTCGATGAGGAGAC 57.700 50.000 0.00 0.00 0.00 3.36
544 595 1.203928 GTGCATTCGATGAGGAGACG 58.796 55.000 0.00 0.00 0.00 4.18
545 596 0.817654 TGCATTCGATGAGGAGACGT 59.182 50.000 0.00 0.00 0.00 4.34
546 597 1.204704 TGCATTCGATGAGGAGACGTT 59.795 47.619 0.00 0.00 0.00 3.99
547 598 2.271800 GCATTCGATGAGGAGACGTTT 58.728 47.619 0.00 0.00 0.00 3.60
548 599 2.282820 GCATTCGATGAGGAGACGTTTC 59.717 50.000 0.00 0.00 0.00 2.78
549 600 3.775202 CATTCGATGAGGAGACGTTTCT 58.225 45.455 6.02 0.00 33.37 2.52
550 601 2.921634 TCGATGAGGAGACGTTTCTG 57.078 50.000 6.02 0.00 29.47 3.02
551 602 2.160205 TCGATGAGGAGACGTTTCTGT 58.840 47.619 6.02 0.00 29.47 3.41
552 603 2.161808 TCGATGAGGAGACGTTTCTGTC 59.838 50.000 6.02 4.35 39.21 3.51
553 604 2.520979 GATGAGGAGACGTTTCTGTCG 58.479 52.381 6.02 0.00 43.70 4.35
554 605 1.601166 TGAGGAGACGTTTCTGTCGA 58.399 50.000 6.02 0.00 43.70 4.20
555 606 1.266175 TGAGGAGACGTTTCTGTCGAC 59.734 52.381 9.11 9.11 43.70 4.20
556 607 0.237761 AGGAGACGTTTCTGTCGACG 59.762 55.000 11.62 6.07 43.70 5.12
557 608 0.236711 GGAGACGTTTCTGTCGACGA 59.763 55.000 11.62 8.49 43.70 4.20
558 609 1.316414 GAGACGTTTCTGTCGACGAC 58.684 55.000 20.97 20.97 43.70 4.34
559 610 0.383983 AGACGTTTCTGTCGACGACG 60.384 55.000 22.06 22.91 43.70 5.12
560 611 0.383491 GACGTTTCTGTCGACGACGA 60.383 55.000 27.94 18.27 46.56 4.20
568 619 2.125952 TCGACGACGAGACGCCTA 60.126 61.111 5.75 0.00 43.81 3.93
569 620 2.021106 CGACGACGAGACGCCTAC 59.979 66.667 0.00 0.00 42.66 3.18
570 621 2.733671 CGACGACGAGACGCCTACA 61.734 63.158 0.00 0.00 42.66 2.74
571 622 1.060622 GACGACGAGACGCCTACAG 59.939 63.158 0.00 0.00 36.70 2.74
572 623 1.633852 GACGACGAGACGCCTACAGT 61.634 60.000 0.00 0.00 36.70 3.55
573 624 1.226046 CGACGAGACGCCTACAGTG 60.226 63.158 0.00 0.00 0.00 3.66
574 625 1.632948 CGACGAGACGCCTACAGTGA 61.633 60.000 0.00 0.00 0.00 3.41
575 626 0.179194 GACGAGACGCCTACAGTGAC 60.179 60.000 0.00 0.00 0.00 3.67
576 627 0.605860 ACGAGACGCCTACAGTGACT 60.606 55.000 0.00 0.00 33.56 3.41
577 628 0.522180 CGAGACGCCTACAGTGACTT 59.478 55.000 0.00 0.00 30.94 3.01
578 629 1.466024 CGAGACGCCTACAGTGACTTC 60.466 57.143 0.00 0.00 30.94 3.01
579 630 0.522180 AGACGCCTACAGTGACTTCG 59.478 55.000 0.00 0.00 0.00 3.79
580 631 0.240411 GACGCCTACAGTGACTTCGT 59.760 55.000 0.00 0.83 0.00 3.85
581 632 0.039437 ACGCCTACAGTGACTTCGTG 60.039 55.000 0.00 0.00 0.00 4.35
582 633 0.240145 CGCCTACAGTGACTTCGTGA 59.760 55.000 0.00 0.00 0.00 4.35
583 634 1.335597 CGCCTACAGTGACTTCGTGAA 60.336 52.381 0.00 0.00 0.00 3.18
584 635 2.671351 CGCCTACAGTGACTTCGTGAAT 60.671 50.000 0.00 0.00 0.00 2.57
585 636 2.924290 GCCTACAGTGACTTCGTGAATC 59.076 50.000 0.00 0.00 0.00 2.52
586 637 3.367498 GCCTACAGTGACTTCGTGAATCT 60.367 47.826 0.00 0.00 0.00 2.40
587 638 4.416620 CCTACAGTGACTTCGTGAATCTC 58.583 47.826 0.00 0.00 0.00 2.75
588 639 4.082733 CCTACAGTGACTTCGTGAATCTCA 60.083 45.833 0.00 0.00 0.00 3.27
589 640 4.322080 ACAGTGACTTCGTGAATCTCAA 57.678 40.909 0.00 0.00 0.00 3.02
590 641 4.302455 ACAGTGACTTCGTGAATCTCAAG 58.698 43.478 0.00 0.00 0.00 3.02
591 642 4.038042 ACAGTGACTTCGTGAATCTCAAGA 59.962 41.667 0.00 0.00 33.23 3.02
592 643 5.167121 CAGTGACTTCGTGAATCTCAAGAT 58.833 41.667 0.00 0.00 35.00 2.40
593 644 5.061933 CAGTGACTTCGTGAATCTCAAGATG 59.938 44.000 0.00 4.66 35.00 2.90
594 645 5.047731 AGTGACTTCGTGAATCTCAAGATGA 60.048 40.000 10.79 0.00 35.00 2.92
595 646 5.809562 GTGACTTCGTGAATCTCAAGATGAT 59.190 40.000 10.79 0.00 35.00 2.45
596 647 6.975197 GTGACTTCGTGAATCTCAAGATGATA 59.025 38.462 10.79 0.39 35.00 2.15
597 648 7.651304 GTGACTTCGTGAATCTCAAGATGATAT 59.349 37.037 10.79 0.00 35.00 1.63
598 649 7.650903 TGACTTCGTGAATCTCAAGATGATATG 59.349 37.037 10.79 0.00 35.00 1.78
599 650 6.423302 ACTTCGTGAATCTCAAGATGATATGC 59.577 38.462 10.79 0.00 35.00 3.14
600 651 5.233225 TCGTGAATCTCAAGATGATATGCC 58.767 41.667 0.00 0.00 34.49 4.40
601 652 4.091075 CGTGAATCTCAAGATGATATGCCG 59.909 45.833 0.00 0.00 34.49 5.69
602 653 4.391216 GTGAATCTCAAGATGATATGCCGG 59.609 45.833 0.00 0.00 34.49 6.13
603 654 4.040829 TGAATCTCAAGATGATATGCCGGT 59.959 41.667 1.90 0.00 34.49 5.28
604 655 4.630644 ATCTCAAGATGATATGCCGGTT 57.369 40.909 1.90 0.00 32.68 4.44
605 656 3.995199 TCTCAAGATGATATGCCGGTTC 58.005 45.455 1.90 0.00 0.00 3.62
606 657 3.387699 TCTCAAGATGATATGCCGGTTCA 59.612 43.478 1.90 1.91 0.00 3.18
607 658 3.732212 TCAAGATGATATGCCGGTTCAG 58.268 45.455 1.90 0.00 0.00 3.02
608 659 3.134623 TCAAGATGATATGCCGGTTCAGT 59.865 43.478 1.90 0.00 0.00 3.41
609 660 3.393089 AGATGATATGCCGGTTCAGTC 57.607 47.619 1.90 0.00 0.00 3.51
610 661 2.968574 AGATGATATGCCGGTTCAGTCT 59.031 45.455 1.90 4.63 0.00 3.24
611 662 2.890808 TGATATGCCGGTTCAGTCTC 57.109 50.000 1.90 0.00 0.00 3.36
612 663 2.388735 TGATATGCCGGTTCAGTCTCT 58.611 47.619 1.90 0.00 0.00 3.10
613 664 2.362397 TGATATGCCGGTTCAGTCTCTC 59.638 50.000 1.90 0.00 0.00 3.20
614 665 0.738975 TATGCCGGTTCAGTCTCTCG 59.261 55.000 1.90 0.00 0.00 4.04
615 666 1.949847 ATGCCGGTTCAGTCTCTCGG 61.950 60.000 1.90 0.00 43.13 4.63
616 667 2.341101 GCCGGTTCAGTCTCTCGGA 61.341 63.158 1.90 0.00 42.94 4.55
617 668 1.803943 CCGGTTCAGTCTCTCGGAG 59.196 63.158 0.00 0.00 42.94 4.63
618 669 1.658686 CCGGTTCAGTCTCTCGGAGG 61.659 65.000 4.96 0.00 42.94 4.30
619 670 0.961358 CGGTTCAGTCTCTCGGAGGT 60.961 60.000 4.96 0.00 0.00 3.85
620 671 0.528470 GGTTCAGTCTCTCGGAGGTG 59.472 60.000 4.96 0.00 0.00 4.00
621 672 1.249407 GTTCAGTCTCTCGGAGGTGT 58.751 55.000 4.96 0.00 0.00 4.16
622 673 1.614413 GTTCAGTCTCTCGGAGGTGTT 59.386 52.381 4.96 0.00 0.00 3.32
623 674 1.996798 TCAGTCTCTCGGAGGTGTTT 58.003 50.000 4.96 0.00 0.00 2.83
624 675 3.150458 TCAGTCTCTCGGAGGTGTTTA 57.850 47.619 4.96 0.00 0.00 2.01
625 676 3.698289 TCAGTCTCTCGGAGGTGTTTAT 58.302 45.455 4.96 0.00 0.00 1.40
626 677 4.851843 TCAGTCTCTCGGAGGTGTTTATA 58.148 43.478 4.96 0.00 0.00 0.98
627 678 4.882427 TCAGTCTCTCGGAGGTGTTTATAG 59.118 45.833 4.96 0.00 0.00 1.31
628 679 4.036971 CAGTCTCTCGGAGGTGTTTATAGG 59.963 50.000 4.96 0.00 0.00 2.57
629 680 3.318557 GTCTCTCGGAGGTGTTTATAGGG 59.681 52.174 4.96 0.00 0.00 3.53
630 681 2.628657 CTCTCGGAGGTGTTTATAGGGG 59.371 54.545 4.96 0.00 0.00 4.79
631 682 2.023695 TCTCGGAGGTGTTTATAGGGGT 60.024 50.000 4.96 0.00 0.00 4.95
632 683 3.205056 TCTCGGAGGTGTTTATAGGGGTA 59.795 47.826 4.96 0.00 0.00 3.69
633 684 3.569491 TCGGAGGTGTTTATAGGGGTAG 58.431 50.000 0.00 0.00 0.00 3.18
634 685 3.052642 TCGGAGGTGTTTATAGGGGTAGT 60.053 47.826 0.00 0.00 0.00 2.73
635 686 3.069158 CGGAGGTGTTTATAGGGGTAGTG 59.931 52.174 0.00 0.00 0.00 2.74
636 687 4.035814 GGAGGTGTTTATAGGGGTAGTGT 58.964 47.826 0.00 0.00 0.00 3.55
637 688 4.141779 GGAGGTGTTTATAGGGGTAGTGTG 60.142 50.000 0.00 0.00 0.00 3.82
638 689 4.432316 AGGTGTTTATAGGGGTAGTGTGT 58.568 43.478 0.00 0.00 0.00 3.72
639 690 4.224370 AGGTGTTTATAGGGGTAGTGTGTG 59.776 45.833 0.00 0.00 0.00 3.82
640 691 4.019950 GGTGTTTATAGGGGTAGTGTGTGT 60.020 45.833 0.00 0.00 0.00 3.72
641 692 4.933400 GTGTTTATAGGGGTAGTGTGTGTG 59.067 45.833 0.00 0.00 0.00 3.82
642 693 3.899052 TTATAGGGGTAGTGTGTGTGC 57.101 47.619 0.00 0.00 0.00 4.57
643 694 0.535335 ATAGGGGTAGTGTGTGTGCG 59.465 55.000 0.00 0.00 0.00 5.34
644 695 2.162338 TAGGGGTAGTGTGTGTGCGC 62.162 60.000 0.00 0.00 0.00 6.09
645 696 3.411351 GGGTAGTGTGTGTGCGCG 61.411 66.667 0.00 0.00 0.00 6.86
646 697 4.072088 GGTAGTGTGTGTGCGCGC 62.072 66.667 27.26 27.26 35.99 6.86
647 698 4.409588 GTAGTGTGTGTGCGCGCG 62.410 66.667 28.44 28.44 40.26 6.86
648 699 4.934942 TAGTGTGTGTGCGCGCGT 62.935 61.111 32.35 10.56 40.26 6.01
650 701 4.879686 GTGTGTGTGCGCGCGTTT 62.880 61.111 32.35 0.00 0.00 3.60
651 702 3.262686 TGTGTGTGCGCGCGTTTA 61.263 55.556 32.35 15.53 0.00 2.01
652 703 2.172419 GTGTGTGCGCGCGTTTAT 59.828 55.556 32.35 0.00 0.00 1.40
653 704 1.282930 TGTGTGTGCGCGCGTTTATA 61.283 50.000 32.35 13.60 0.00 0.98
654 705 0.179245 GTGTGTGCGCGCGTTTATAA 60.179 50.000 32.35 10.40 0.00 0.98
655 706 0.093875 TGTGTGCGCGCGTTTATAAG 59.906 50.000 32.35 0.04 0.00 1.73
656 707 0.585519 GTGTGCGCGCGTTTATAAGG 60.586 55.000 32.35 0.00 0.00 2.69
657 708 1.011574 GTGCGCGCGTTTATAAGGG 60.012 57.895 32.35 0.00 0.00 3.95
658 709 1.448189 TGCGCGCGTTTATAAGGGT 60.448 52.632 32.35 0.00 0.00 4.34
659 710 0.179116 TGCGCGCGTTTATAAGGGTA 60.179 50.000 32.35 0.00 0.00 3.69
660 711 0.929615 GCGCGCGTTTATAAGGGTAA 59.070 50.000 32.35 0.00 0.00 2.85
661 712 1.071041 GCGCGCGTTTATAAGGGTAAG 60.071 52.381 32.35 0.00 0.00 2.34
662 713 1.071041 CGCGCGTTTATAAGGGTAAGC 60.071 52.381 24.19 0.00 0.00 3.09
663 714 2.916735 CGCGTTTATAAGGGTAAGCG 57.083 50.000 0.00 1.81 40.01 4.68
664 715 2.195922 CGCGTTTATAAGGGTAAGCGT 58.804 47.619 0.00 0.00 39.47 5.07
665 716 3.371168 CGCGTTTATAAGGGTAAGCGTA 58.629 45.455 0.00 0.00 39.47 4.42
666 717 3.983344 CGCGTTTATAAGGGTAAGCGTAT 59.017 43.478 0.00 0.00 39.47 3.06
667 718 4.143473 CGCGTTTATAAGGGTAAGCGTATG 60.143 45.833 0.00 0.00 39.47 2.39
668 719 4.376717 GCGTTTATAAGGGTAAGCGTATGC 60.377 45.833 0.00 0.00 39.47 3.14
682 733 3.348795 CGTATGCGCGTTTATATGACC 57.651 47.619 7.78 0.00 0.00 4.02
683 734 2.222202 CGTATGCGCGTTTATATGACCG 60.222 50.000 7.78 1.39 0.00 4.79
684 735 0.511221 ATGCGCGTTTATATGACCGC 59.489 50.000 8.43 0.00 42.53 5.68
685 736 0.528901 TGCGCGTTTATATGACCGCT 60.529 50.000 8.43 0.00 43.70 5.52
686 737 0.580104 GCGCGTTTATATGACCGCTT 59.420 50.000 8.43 0.00 43.70 4.68
687 738 1.656429 GCGCGTTTATATGACCGCTTG 60.656 52.381 8.43 0.00 43.70 4.01
688 739 1.656429 CGCGTTTATATGACCGCTTGC 60.656 52.381 7.76 0.00 43.70 4.01
689 740 1.329292 GCGTTTATATGACCGCTTGCA 59.671 47.619 2.07 0.00 42.66 4.08
690 741 2.032030 GCGTTTATATGACCGCTTGCAT 60.032 45.455 2.07 0.00 42.66 3.96
691 742 3.799035 CGTTTATATGACCGCTTGCATC 58.201 45.455 0.00 0.00 0.00 3.91
692 743 3.494626 CGTTTATATGACCGCTTGCATCT 59.505 43.478 0.00 0.00 0.00 2.90
693 744 4.609113 CGTTTATATGACCGCTTGCATCTG 60.609 45.833 0.00 0.00 0.00 2.90
694 745 2.627515 ATATGACCGCTTGCATCTGT 57.372 45.000 0.00 0.00 0.00 3.41
695 746 3.751479 ATATGACCGCTTGCATCTGTA 57.249 42.857 0.00 0.00 0.00 2.74
696 747 1.656652 ATGACCGCTTGCATCTGTAC 58.343 50.000 0.00 0.00 0.00 2.90
697 748 0.735978 TGACCGCTTGCATCTGTACG 60.736 55.000 0.00 0.00 0.00 3.67
698 749 1.421410 GACCGCTTGCATCTGTACGG 61.421 60.000 0.00 0.00 45.86 4.02
699 750 1.447838 CCGCTTGCATCTGTACGGT 60.448 57.895 0.64 0.00 35.99 4.83
700 751 1.695893 CCGCTTGCATCTGTACGGTG 61.696 60.000 0.64 1.03 35.99 4.94
701 752 1.014044 CGCTTGCATCTGTACGGTGT 61.014 55.000 0.64 0.00 0.00 4.16
702 753 1.156736 GCTTGCATCTGTACGGTGTT 58.843 50.000 0.64 0.00 0.00 3.32
703 754 2.343101 GCTTGCATCTGTACGGTGTTA 58.657 47.619 0.64 0.00 0.00 2.41
704 755 2.739913 GCTTGCATCTGTACGGTGTTAA 59.260 45.455 0.64 0.46 0.00 2.01
705 756 3.187637 GCTTGCATCTGTACGGTGTTAAA 59.812 43.478 0.64 0.00 0.00 1.52
706 757 4.319911 GCTTGCATCTGTACGGTGTTAAAA 60.320 41.667 0.64 0.00 0.00 1.52
707 758 5.752892 TTGCATCTGTACGGTGTTAAAAA 57.247 34.783 0.64 0.00 0.00 1.94
726 777 1.560505 AAAATGTCCCAGTGATGCCC 58.439 50.000 0.00 0.00 0.00 5.36
727 778 0.680921 AAATGTCCCAGTGATGCCCG 60.681 55.000 0.00 0.00 0.00 6.13
728 779 2.556840 AATGTCCCAGTGATGCCCGG 62.557 60.000 0.00 0.00 0.00 5.73
744 795 4.540153 GGCTGCCGATTTCTAGCA 57.460 55.556 1.35 0.00 37.89 3.49
745 796 3.012560 GGCTGCCGATTTCTAGCAT 57.987 52.632 1.35 0.00 37.89 3.79
746 797 1.312815 GGCTGCCGATTTCTAGCATT 58.687 50.000 1.35 0.00 37.89 3.56
747 798 1.678101 GGCTGCCGATTTCTAGCATTT 59.322 47.619 1.35 0.00 37.89 2.32
748 799 2.878406 GGCTGCCGATTTCTAGCATTTA 59.122 45.455 1.35 0.00 37.89 1.40
749 800 3.304057 GGCTGCCGATTTCTAGCATTTAC 60.304 47.826 1.35 0.00 37.89 2.01
750 801 3.604772 GCTGCCGATTTCTAGCATTTACG 60.605 47.826 0.00 0.00 35.64 3.18
751 802 2.286833 TGCCGATTTCTAGCATTTACGC 59.713 45.455 0.00 0.00 0.00 4.42
853 904 3.601435 GGCTTCTTCTCTTCTACCAACC 58.399 50.000 0.00 0.00 0.00 3.77
854 905 3.601435 GCTTCTTCTCTTCTACCAACCC 58.399 50.000 0.00 0.00 0.00 4.11
918 981 2.477176 CGAGAGCAGAGGAGACGGG 61.477 68.421 0.00 0.00 0.00 5.28
939 1002 4.507869 GGGGGTTCTTTGCTAGGTTTTAGA 60.508 45.833 0.00 0.00 0.00 2.10
1251 1314 2.026590 ACCAACGACGACCACGAC 59.973 61.111 0.00 0.00 42.66 4.34
1587 1656 1.194781 TCGCCAGGAAGGAGAAGCTT 61.195 55.000 0.00 0.00 43.76 3.74
1695 1764 3.149196 TCCACCTTCTTGTTCTTGATGC 58.851 45.455 0.00 0.00 0.00 3.91
1728 1797 1.064825 AGTACCACCAGGAACAAGGG 58.935 55.000 0.00 0.00 38.69 3.95
1736 1805 4.148838 CACCAGGAACAAGGGTTAATTGA 58.851 43.478 0.00 0.00 37.36 2.57
1760 1829 9.851686 TGATCTAGTGATTTATTTGGTATTGCT 57.148 29.630 0.00 0.00 32.19 3.91
1777 1854 1.000060 TGCTTCATTGCTTGAACAGGC 60.000 47.619 2.02 2.02 39.44 4.85
1778 1855 1.670967 GCTTCATTGCTTGAACAGGCC 60.671 52.381 0.00 0.00 39.44 5.19
1797 1874 2.679336 GCCCGTTCAATATGTAAACCGT 59.321 45.455 0.00 0.00 0.00 4.83
1850 1927 1.131638 ATCCTGGCGCTTCCATAGAA 58.868 50.000 7.64 0.00 45.50 2.10
1934 2019 5.658634 TGAATATCTTGTGACTGTAGAGCCT 59.341 40.000 0.00 0.00 0.00 4.58
1952 2037 4.733165 AGCCTATGGATGCATTTGTATGT 58.267 39.130 4.56 0.00 34.12 2.29
1953 2038 4.521639 AGCCTATGGATGCATTTGTATGTG 59.478 41.667 4.56 0.00 34.12 3.21
1999 2086 5.766150 TCTCTATCAGACTAAAGAGCTGC 57.234 43.478 0.00 0.00 36.29 5.25
2234 2321 5.155905 AGCAGTATAGCCTTAACCCAGTAT 58.844 41.667 0.00 0.00 34.23 2.12
2235 2322 6.320518 AGCAGTATAGCCTTAACCCAGTATA 58.679 40.000 0.00 0.00 34.23 1.47
2236 2323 6.210984 AGCAGTATAGCCTTAACCCAGTATAC 59.789 42.308 0.00 0.00 34.23 1.47
2237 2324 6.210984 GCAGTATAGCCTTAACCCAGTATACT 59.789 42.308 0.00 0.00 35.18 2.12
2238 2325 7.256225 GCAGTATAGCCTTAACCCAGTATACTT 60.256 40.741 1.56 0.00 33.44 2.24
2239 2326 9.305555 CAGTATAGCCTTAACCCAGTATACTTA 57.694 37.037 1.56 0.00 33.44 2.24
2240 2327 9.887862 AGTATAGCCTTAACCCAGTATACTTAA 57.112 33.333 1.56 0.00 32.32 1.85
2252 2339 6.119536 CCAGTATACTTAATGGCCTCACAAA 58.880 40.000 3.32 0.00 36.81 2.83
2296 2383 9.368416 TCCTAGCATTGTCAGTAATCTAGTTAT 57.632 33.333 0.00 0.00 0.00 1.89
2378 2465 9.753674 TGGACCTTAATATCATCAAAGAACTTT 57.246 29.630 0.00 0.00 0.00 2.66
2402 2489 7.591421 TGTTCTATTCGAGGTACCATATCAA 57.409 36.000 15.94 0.00 0.00 2.57
2496 2583 7.770897 ACTACATGGGAGAATTACAAAGCTTAG 59.229 37.037 0.00 0.00 0.00 2.18
2500 2587 4.700213 GGGAGAATTACAAAGCTTAGCACA 59.300 41.667 7.07 0.00 0.00 4.57
2524 2611 6.654793 AATGATTCTGTTACTTCTCGAAGC 57.345 37.500 6.58 0.00 41.99 3.86
2566 2653 6.350629 GTACACTTCTGTACTAAAGGGGAA 57.649 41.667 12.67 1.14 46.53 3.97
2590 2677 8.934023 AAAAGACATCAAAGGTAATTGGAGTA 57.066 30.769 0.00 0.00 0.00 2.59
2598 2685 4.060038 AGGTAATTGGAGTATGCAGACG 57.940 45.455 5.71 0.00 38.09 4.18
2605 2692 1.537135 GGAGTATGCAGACGGAGAAGC 60.537 57.143 5.71 0.00 0.00 3.86
2617 2704 1.090052 GGAGAAGCCCCGTTCATTCG 61.090 60.000 0.00 0.00 0.00 3.34
2634 2721 7.044249 CGTTCATTCGTACTTCATTACCTACTG 60.044 40.741 0.00 0.00 0.00 2.74
2657 2744 4.274978 ACATGCATGTCCTGAATTCATGA 58.725 39.130 26.61 9.05 40.64 3.07
2921 3021 1.154205 CCGTATGCAGCAGGTACAGC 61.154 60.000 0.00 0.00 42.86 4.40
3372 3472 8.545420 CCACATTTCAAAACTTTTCAATCTGAG 58.455 33.333 0.00 0.00 0.00 3.35
3373 3473 9.304731 CACATTTCAAAACTTTTCAATCTGAGA 57.695 29.630 0.00 0.00 0.00 3.27
3374 3474 9.874205 ACATTTCAAAACTTTTCAATCTGAGAA 57.126 25.926 0.00 0.00 0.00 2.87
3455 3570 1.308047 GTGGCACTGTGACATTGACA 58.692 50.000 20.84 7.44 37.93 3.58
3460 3575 3.365832 GCACTGTGACATTGACAACTTG 58.634 45.455 12.86 0.00 0.00 3.16
3462 3577 2.032054 ACTGTGACATTGACAACTTGCG 59.968 45.455 0.00 0.00 0.00 4.85
3479 3594 5.302360 ACTTGCGTGTTCCTTTGTATCTAA 58.698 37.500 0.00 0.00 0.00 2.10
3546 3661 1.750399 GGCAACATCAGGCGTGGAT 60.750 57.895 6.56 0.00 0.00 3.41
3580 3695 4.680237 TGGTCGCGGACTTGCCTG 62.680 66.667 6.13 0.00 32.47 4.85
3751 3866 9.774742 CTAAGTTGCTAAGACAATTAATTGACC 57.225 33.333 30.18 20.92 40.14 4.02
3794 3909 1.140252 TCCTTTCTACTTATGCGGGGC 59.860 52.381 0.00 0.00 0.00 5.80
3818 3933 1.195448 CGAGCAATTTTGTCAGCGTCT 59.805 47.619 0.00 0.00 0.00 4.18
3894 4009 1.132834 TGCCTTGATGTAGCGCATTTG 59.867 47.619 11.47 0.00 38.06 2.32
3943 4059 1.755200 AGGCCCTTCCTTAAGAACCA 58.245 50.000 3.36 0.00 44.75 3.67
3958 4074 9.125026 CCTTAAGAACCAAAGTGCATTCTATAT 57.875 33.333 3.36 0.00 31.20 0.86
4088 4206 9.738832 ACACACAAAAATAGTTTATGTTGTACC 57.261 29.630 3.47 0.00 30.49 3.34
4132 4250 3.476024 GCGTAATTTGTAAAATCCGCGTC 59.524 43.478 4.92 0.00 0.00 5.19
4133 4251 4.023783 CGTAATTTGTAAAATCCGCGTCC 58.976 43.478 4.92 0.00 0.00 4.79
4152 4270 0.175073 CTACGGGTTCTTCTTCGGGG 59.825 60.000 0.00 0.00 0.00 5.73
4243 4361 0.259938 AATCCCACCAATGCTCCTCC 59.740 55.000 0.00 0.00 0.00 4.30
4431 4549 4.681978 AGCACCTGGAACGCGGAC 62.682 66.667 12.47 3.26 0.00 4.79
4497 4615 2.680352 GAGTCCCAGGCCGAGACA 60.680 66.667 20.42 0.00 32.82 3.41
4741 4859 1.568612 AAATGCCACACTGACGAGCG 61.569 55.000 0.00 0.00 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 3.064271 GGTCTTTCACAAACGTGTTGCTA 59.936 43.478 9.44 0.00 35.07 3.49
32 33 2.159435 GGTCTTTCACAAACGTGTTGCT 60.159 45.455 9.44 0.00 35.07 3.91
88 89 3.325293 ACATCACGCAACAGAGAGAAT 57.675 42.857 0.00 0.00 0.00 2.40
146 147 1.822990 AGGCTGCAACATCCAAATCAG 59.177 47.619 0.50 0.00 0.00 2.90
268 269 8.736244 ACAGTACAGAACACAAACAAAATTACT 58.264 29.630 0.00 0.00 0.00 2.24
323 328 7.609760 AGATACACAGAATTTTGCGTATTCA 57.390 32.000 10.09 0.00 35.04 2.57
358 364 5.380900 TGGGAAAATACACAGTGATGTCAA 58.619 37.500 7.81 0.00 33.85 3.18
375 381 6.500400 TCCGAATCTCCTATATCAATGGGAAA 59.500 38.462 0.00 0.00 41.78 3.13
394 405 3.408634 CCAAGTGTGTAAACCTCCGAAT 58.591 45.455 0.00 0.00 0.00 3.34
425 436 5.441500 TCCCAAGTGTGTATGTCTCAAAAA 58.558 37.500 0.00 0.00 0.00 1.94
426 437 5.042463 TCCCAAGTGTGTATGTCTCAAAA 57.958 39.130 0.00 0.00 0.00 2.44
427 438 4.698201 TCCCAAGTGTGTATGTCTCAAA 57.302 40.909 0.00 0.00 0.00 2.69
428 439 4.908601 ATCCCAAGTGTGTATGTCTCAA 57.091 40.909 0.00 0.00 0.00 3.02
429 440 4.142249 CGTATCCCAAGTGTGTATGTCTCA 60.142 45.833 0.00 0.00 0.00 3.27
430 441 4.142227 ACGTATCCCAAGTGTGTATGTCTC 60.142 45.833 0.00 0.00 0.00 3.36
431 442 3.767673 ACGTATCCCAAGTGTGTATGTCT 59.232 43.478 0.00 0.00 0.00 3.41
432 443 4.119442 ACGTATCCCAAGTGTGTATGTC 57.881 45.455 0.00 0.00 0.00 3.06
433 444 4.463539 TGTACGTATCCCAAGTGTGTATGT 59.536 41.667 0.00 0.00 0.00 2.29
434 445 4.802039 GTGTACGTATCCCAAGTGTGTATG 59.198 45.833 0.00 0.00 0.00 2.39
435 446 4.439153 CGTGTACGTATCCCAAGTGTGTAT 60.439 45.833 0.00 0.00 34.11 2.29
436 447 3.119884 CGTGTACGTATCCCAAGTGTGTA 60.120 47.826 0.00 0.00 34.11 2.90
437 448 2.352030 CGTGTACGTATCCCAAGTGTGT 60.352 50.000 0.00 0.00 34.11 3.72
438 449 2.256174 CGTGTACGTATCCCAAGTGTG 58.744 52.381 0.00 0.00 34.11 3.82
439 450 2.642139 CGTGTACGTATCCCAAGTGT 57.358 50.000 0.00 0.00 34.11 3.55
452 463 7.355332 ACAGTTATTCCATTTGTACGTGTAC 57.645 36.000 0.00 3.21 36.63 2.90
457 468 7.067532 TGCTTACAGTTATTCCATTTGTACG 57.932 36.000 0.00 0.00 0.00 3.67
458 469 8.673711 TGATGCTTACAGTTATTCCATTTGTAC 58.326 33.333 0.00 0.00 0.00 2.90
476 487 0.245266 TCGCTGGACGTTGATGCTTA 59.755 50.000 0.00 0.00 44.19 3.09
491 542 3.138283 TCCTGAAATAAATCCCCATCGCT 59.862 43.478 0.00 0.00 0.00 4.93
492 543 3.486383 TCCTGAAATAAATCCCCATCGC 58.514 45.455 0.00 0.00 0.00 4.58
493 544 6.294731 GGAAATCCTGAAATAAATCCCCATCG 60.295 42.308 0.00 0.00 0.00 3.84
494 545 6.784473 AGGAAATCCTGAAATAAATCCCCATC 59.216 38.462 0.00 0.00 46.55 3.51
495 546 6.696638 AGGAAATCCTGAAATAAATCCCCAT 58.303 36.000 0.00 0.00 46.55 4.00
496 547 6.103838 AGGAAATCCTGAAATAAATCCCCA 57.896 37.500 0.00 0.00 46.55 4.96
520 571 0.234106 CCTCATCGAATGCACATCGC 59.766 55.000 16.61 0.00 40.04 4.58
521 572 1.791204 CTCCTCATCGAATGCACATCG 59.209 52.381 15.57 15.57 41.53 3.84
522 573 2.799412 GTCTCCTCATCGAATGCACATC 59.201 50.000 0.00 0.00 0.00 3.06
523 574 2.800985 CGTCTCCTCATCGAATGCACAT 60.801 50.000 0.00 0.00 0.00 3.21
524 575 1.469767 CGTCTCCTCATCGAATGCACA 60.470 52.381 0.00 0.00 0.00 4.57
525 576 1.203928 CGTCTCCTCATCGAATGCAC 58.796 55.000 0.00 0.00 0.00 4.57
526 577 0.817654 ACGTCTCCTCATCGAATGCA 59.182 50.000 0.00 0.00 0.00 3.96
527 578 1.927895 AACGTCTCCTCATCGAATGC 58.072 50.000 0.00 0.00 0.00 3.56
528 579 3.549471 CAGAAACGTCTCCTCATCGAATG 59.451 47.826 0.00 0.00 28.78 2.67
529 580 3.193691 ACAGAAACGTCTCCTCATCGAAT 59.806 43.478 0.00 0.00 28.78 3.34
530 581 2.557056 ACAGAAACGTCTCCTCATCGAA 59.443 45.455 0.00 0.00 28.78 3.71
531 582 2.160205 ACAGAAACGTCTCCTCATCGA 58.840 47.619 0.00 0.00 28.78 3.59
532 583 2.520979 GACAGAAACGTCTCCTCATCG 58.479 52.381 0.00 0.00 32.92 3.84
533 584 2.161808 TCGACAGAAACGTCTCCTCATC 59.838 50.000 0.00 0.00 33.54 2.92
534 585 2.095161 GTCGACAGAAACGTCTCCTCAT 60.095 50.000 11.55 0.00 33.54 2.90
535 586 1.266175 GTCGACAGAAACGTCTCCTCA 59.734 52.381 11.55 0.00 33.54 3.86
536 587 1.725292 CGTCGACAGAAACGTCTCCTC 60.725 57.143 17.16 0.00 34.30 3.71
537 588 0.237761 CGTCGACAGAAACGTCTCCT 59.762 55.000 17.16 0.00 34.30 3.69
538 589 0.236711 TCGTCGACAGAAACGTCTCC 59.763 55.000 17.16 0.00 39.78 3.71
539 590 1.316414 GTCGTCGACAGAAACGTCTC 58.684 55.000 20.28 0.00 39.78 3.36
540 591 0.383983 CGTCGTCGACAGAAACGTCT 60.384 55.000 24.13 0.00 39.78 4.18
541 592 0.383491 TCGTCGTCGACAGAAACGTC 60.383 55.000 24.13 0.00 41.35 4.34
542 593 0.383983 CTCGTCGTCGACAGAAACGT 60.384 55.000 24.13 0.00 41.35 3.99
543 594 0.110956 TCTCGTCGTCGACAGAAACG 60.111 55.000 24.13 17.77 41.35 3.60
544 595 1.316414 GTCTCGTCGTCGACAGAAAC 58.684 55.000 24.13 14.89 41.35 2.78
545 596 0.110956 CGTCTCGTCGTCGACAGAAA 60.111 55.000 24.13 7.54 41.35 2.52
546 597 1.490258 CGTCTCGTCGTCGACAGAA 59.510 57.895 24.13 8.76 41.35 3.02
547 598 3.008240 GCGTCTCGTCGTCGACAGA 62.008 63.158 24.13 20.50 41.35 3.41
548 599 2.571096 GCGTCTCGTCGTCGACAG 60.571 66.667 24.13 18.82 41.35 3.51
549 600 4.081030 GGCGTCTCGTCGTCGACA 62.081 66.667 24.13 10.99 41.35 4.35
550 601 2.447887 TAGGCGTCTCGTCGTCGAC 61.448 63.158 15.51 15.51 41.35 4.20
551 602 2.125952 TAGGCGTCTCGTCGTCGA 60.126 61.111 4.42 4.42 44.12 4.20
552 603 2.021106 GTAGGCGTCTCGTCGTCG 59.979 66.667 0.00 0.00 40.52 5.12
553 604 1.060622 CTGTAGGCGTCTCGTCGTC 59.939 63.158 0.00 0.00 36.23 4.20
554 605 1.670406 ACTGTAGGCGTCTCGTCGT 60.670 57.895 0.00 0.00 36.23 4.34
555 606 1.226046 CACTGTAGGCGTCTCGTCG 60.226 63.158 0.00 0.00 36.23 5.12
556 607 0.179194 GTCACTGTAGGCGTCTCGTC 60.179 60.000 0.00 0.00 0.00 4.20
557 608 0.605860 AGTCACTGTAGGCGTCTCGT 60.606 55.000 0.00 0.00 0.00 4.18
558 609 0.522180 AAGTCACTGTAGGCGTCTCG 59.478 55.000 0.00 0.00 0.00 4.04
559 610 1.466024 CGAAGTCACTGTAGGCGTCTC 60.466 57.143 0.00 0.00 0.00 3.36
560 611 0.522180 CGAAGTCACTGTAGGCGTCT 59.478 55.000 0.00 0.00 0.00 4.18
561 612 0.240411 ACGAAGTCACTGTAGGCGTC 59.760 55.000 0.00 0.00 29.74 5.19
562 613 0.039437 CACGAAGTCACTGTAGGCGT 60.039 55.000 0.00 0.00 41.61 5.68
563 614 0.240145 TCACGAAGTCACTGTAGGCG 59.760 55.000 0.00 0.00 41.61 5.52
564 615 2.433868 TTCACGAAGTCACTGTAGGC 57.566 50.000 0.00 0.00 41.61 3.93
565 616 4.082733 TGAGATTCACGAAGTCACTGTAGG 60.083 45.833 0.00 0.00 41.61 3.18
566 617 5.048153 TGAGATTCACGAAGTCACTGTAG 57.952 43.478 0.00 0.00 41.61 2.74
567 618 5.240844 TCTTGAGATTCACGAAGTCACTGTA 59.759 40.000 0.00 0.00 41.61 2.74
568 619 4.038042 TCTTGAGATTCACGAAGTCACTGT 59.962 41.667 0.00 0.00 41.61 3.55
569 620 4.550422 TCTTGAGATTCACGAAGTCACTG 58.450 43.478 0.00 0.00 41.61 3.66
570 621 4.855715 TCTTGAGATTCACGAAGTCACT 57.144 40.909 0.00 0.00 41.61 3.41
571 622 5.164233 TCATCTTGAGATTCACGAAGTCAC 58.836 41.667 0.00 0.00 31.78 3.67
572 623 5.391312 TCATCTTGAGATTCACGAAGTCA 57.609 39.130 0.00 0.00 31.78 3.41
573 624 7.359097 GCATATCATCTTGAGATTCACGAAGTC 60.359 40.741 0.00 0.00 31.78 3.01
574 625 6.423302 GCATATCATCTTGAGATTCACGAAGT 59.577 38.462 0.00 0.00 34.16 3.01
575 626 6.128607 GGCATATCATCTTGAGATTCACGAAG 60.129 42.308 0.00 0.00 28.30 3.79
576 627 5.698089 GGCATATCATCTTGAGATTCACGAA 59.302 40.000 0.00 0.00 28.30 3.85
577 628 5.233225 GGCATATCATCTTGAGATTCACGA 58.767 41.667 0.00 0.00 31.21 4.35
578 629 4.091075 CGGCATATCATCTTGAGATTCACG 59.909 45.833 0.00 0.00 31.21 4.35
579 630 4.391216 CCGGCATATCATCTTGAGATTCAC 59.609 45.833 0.00 0.00 31.21 3.18
580 631 4.040829 ACCGGCATATCATCTTGAGATTCA 59.959 41.667 0.00 0.00 31.21 2.57
581 632 4.573900 ACCGGCATATCATCTTGAGATTC 58.426 43.478 0.00 0.00 31.21 2.52
582 633 4.630644 ACCGGCATATCATCTTGAGATT 57.369 40.909 0.00 0.00 31.21 2.40
583 634 4.040829 TGAACCGGCATATCATCTTGAGAT 59.959 41.667 0.00 0.00 34.56 2.75
584 635 3.387699 TGAACCGGCATATCATCTTGAGA 59.612 43.478 0.00 0.00 0.00 3.27
585 636 3.732212 TGAACCGGCATATCATCTTGAG 58.268 45.455 0.00 0.00 0.00 3.02
586 637 3.134623 ACTGAACCGGCATATCATCTTGA 59.865 43.478 0.00 0.00 0.00 3.02
587 638 3.470709 ACTGAACCGGCATATCATCTTG 58.529 45.455 0.00 0.00 0.00 3.02
588 639 3.389329 AGACTGAACCGGCATATCATCTT 59.611 43.478 0.00 0.00 0.00 2.40
589 640 2.968574 AGACTGAACCGGCATATCATCT 59.031 45.455 0.00 4.23 0.00 2.90
590 641 3.006323 AGAGACTGAACCGGCATATCATC 59.994 47.826 0.00 2.11 0.00 2.92
591 642 2.968574 AGAGACTGAACCGGCATATCAT 59.031 45.455 0.00 0.00 0.00 2.45
592 643 2.362397 GAGAGACTGAACCGGCATATCA 59.638 50.000 0.00 0.00 0.00 2.15
593 644 2.605823 CGAGAGACTGAACCGGCATATC 60.606 54.545 0.00 0.00 0.00 1.63
594 645 1.338337 CGAGAGACTGAACCGGCATAT 59.662 52.381 0.00 0.00 0.00 1.78
595 646 0.738975 CGAGAGACTGAACCGGCATA 59.261 55.000 0.00 0.00 0.00 3.14
596 647 1.513158 CGAGAGACTGAACCGGCAT 59.487 57.895 0.00 0.00 0.00 4.40
597 648 2.636412 CCGAGAGACTGAACCGGCA 61.636 63.158 0.00 0.00 33.47 5.69
598 649 2.182030 CCGAGAGACTGAACCGGC 59.818 66.667 0.00 0.00 33.47 6.13
599 650 1.658686 CCTCCGAGAGACTGAACCGG 61.659 65.000 0.00 0.00 41.36 5.28
600 651 0.961358 ACCTCCGAGAGACTGAACCG 60.961 60.000 0.00 0.00 0.00 4.44
601 652 0.528470 CACCTCCGAGAGACTGAACC 59.472 60.000 0.00 0.00 0.00 3.62
602 653 1.249407 ACACCTCCGAGAGACTGAAC 58.751 55.000 0.00 0.00 0.00 3.18
603 654 1.996798 AACACCTCCGAGAGACTGAA 58.003 50.000 0.00 0.00 0.00 3.02
604 655 1.996798 AAACACCTCCGAGAGACTGA 58.003 50.000 0.00 0.00 0.00 3.41
605 656 4.036971 CCTATAAACACCTCCGAGAGACTG 59.963 50.000 0.00 1.36 0.00 3.51
606 657 4.208746 CCTATAAACACCTCCGAGAGACT 58.791 47.826 0.00 0.00 0.00 3.24
607 658 3.318557 CCCTATAAACACCTCCGAGAGAC 59.681 52.174 0.00 0.00 0.00 3.36
608 659 3.563223 CCCTATAAACACCTCCGAGAGA 58.437 50.000 0.00 0.00 0.00 3.10
609 660 2.628657 CCCCTATAAACACCTCCGAGAG 59.371 54.545 0.00 0.00 0.00 3.20
610 661 2.023695 ACCCCTATAAACACCTCCGAGA 60.024 50.000 0.00 0.00 0.00 4.04
611 662 2.395619 ACCCCTATAAACACCTCCGAG 58.604 52.381 0.00 0.00 0.00 4.63
612 663 2.555732 ACCCCTATAAACACCTCCGA 57.444 50.000 0.00 0.00 0.00 4.55
613 664 3.069158 CACTACCCCTATAAACACCTCCG 59.931 52.174 0.00 0.00 0.00 4.63
614 665 4.035814 ACACTACCCCTATAAACACCTCC 58.964 47.826 0.00 0.00 0.00 4.30
615 666 4.468868 ACACACTACCCCTATAAACACCTC 59.531 45.833 0.00 0.00 0.00 3.85
616 667 4.224370 CACACACTACCCCTATAAACACCT 59.776 45.833 0.00 0.00 0.00 4.00
617 668 4.019950 ACACACACTACCCCTATAAACACC 60.020 45.833 0.00 0.00 0.00 4.16
618 669 4.933400 CACACACACTACCCCTATAAACAC 59.067 45.833 0.00 0.00 0.00 3.32
619 670 4.563993 GCACACACACTACCCCTATAAACA 60.564 45.833 0.00 0.00 0.00 2.83
620 671 3.937079 GCACACACACTACCCCTATAAAC 59.063 47.826 0.00 0.00 0.00 2.01
621 672 3.368635 CGCACACACACTACCCCTATAAA 60.369 47.826 0.00 0.00 0.00 1.40
622 673 2.166870 CGCACACACACTACCCCTATAA 59.833 50.000 0.00 0.00 0.00 0.98
623 674 1.752498 CGCACACACACTACCCCTATA 59.248 52.381 0.00 0.00 0.00 1.31
624 675 0.535335 CGCACACACACTACCCCTAT 59.465 55.000 0.00 0.00 0.00 2.57
625 676 1.969085 CGCACACACACTACCCCTA 59.031 57.895 0.00 0.00 0.00 3.53
626 677 2.741092 CGCACACACACTACCCCT 59.259 61.111 0.00 0.00 0.00 4.79
627 678 3.047877 GCGCACACACACTACCCC 61.048 66.667 0.30 0.00 0.00 4.95
628 679 3.411351 CGCGCACACACACTACCC 61.411 66.667 8.75 0.00 0.00 3.69
629 680 4.072088 GCGCGCACACACACTACC 62.072 66.667 29.10 0.00 0.00 3.18
630 681 4.409588 CGCGCGCACACACACTAC 62.410 66.667 32.61 0.00 0.00 2.73
631 682 4.934942 ACGCGCGCACACACACTA 62.935 61.111 32.58 0.00 0.00 2.74
633 684 2.757946 ATAAACGCGCGCACACACAC 62.758 55.000 32.58 0.00 0.00 3.82
634 685 1.282930 TATAAACGCGCGCACACACA 61.283 50.000 32.58 10.80 0.00 3.72
635 686 0.179245 TTATAAACGCGCGCACACAC 60.179 50.000 32.58 0.00 0.00 3.82
636 687 0.093875 CTTATAAACGCGCGCACACA 59.906 50.000 32.58 13.59 0.00 3.72
637 688 0.585519 CCTTATAAACGCGCGCACAC 60.586 55.000 32.58 0.72 0.00 3.82
638 689 1.697772 CCCTTATAAACGCGCGCACA 61.698 55.000 32.58 15.55 0.00 4.57
639 690 1.011574 CCCTTATAAACGCGCGCAC 60.012 57.895 32.58 2.05 0.00 5.34
640 691 0.179116 TACCCTTATAAACGCGCGCA 60.179 50.000 32.58 16.40 0.00 6.09
641 692 0.929615 TTACCCTTATAAACGCGCGC 59.070 50.000 32.58 23.91 0.00 6.86
642 693 1.071041 GCTTACCCTTATAAACGCGCG 60.071 52.381 30.96 30.96 0.00 6.86
643 694 1.071041 CGCTTACCCTTATAAACGCGC 60.071 52.381 5.73 0.00 32.83 6.86
644 695 2.195922 ACGCTTACCCTTATAAACGCG 58.804 47.619 3.53 3.53 44.26 6.01
645 696 4.376717 GCATACGCTTACCCTTATAAACGC 60.377 45.833 0.00 0.00 34.30 4.84
646 697 4.143473 CGCATACGCTTACCCTTATAAACG 60.143 45.833 0.00 0.00 35.30 3.60
647 698 5.260027 CGCATACGCTTACCCTTATAAAC 57.740 43.478 0.00 0.00 35.30 2.01
662 713 2.222202 CGGTCATATAAACGCGCATACG 60.222 50.000 5.73 0.00 44.07 3.06
663 714 2.471749 GCGGTCATATAAACGCGCATAC 60.472 50.000 5.73 0.00 42.66 2.39
664 715 1.722464 GCGGTCATATAAACGCGCATA 59.278 47.619 5.73 1.53 42.66 3.14
665 716 0.511221 GCGGTCATATAAACGCGCAT 59.489 50.000 5.73 0.00 42.66 4.73
666 717 1.928653 GCGGTCATATAAACGCGCA 59.071 52.632 5.73 0.00 42.66 6.09
667 718 4.792125 GCGGTCATATAAACGCGC 57.208 55.556 5.73 0.00 42.66 6.86
670 721 3.494626 AGATGCAAGCGGTCATATAAACG 59.505 43.478 0.00 0.00 0.00 3.60
671 722 4.273480 ACAGATGCAAGCGGTCATATAAAC 59.727 41.667 0.00 0.00 0.00 2.01
672 723 4.450976 ACAGATGCAAGCGGTCATATAAA 58.549 39.130 0.00 0.00 0.00 1.40
673 724 4.071961 ACAGATGCAAGCGGTCATATAA 57.928 40.909 0.00 0.00 0.00 0.98
674 725 3.751479 ACAGATGCAAGCGGTCATATA 57.249 42.857 0.00 0.00 0.00 0.86
675 726 2.627515 ACAGATGCAAGCGGTCATAT 57.372 45.000 0.00 0.00 0.00 1.78
676 727 2.798145 CGTACAGATGCAAGCGGTCATA 60.798 50.000 0.00 0.00 30.10 2.15
677 728 1.656652 GTACAGATGCAAGCGGTCAT 58.343 50.000 0.00 0.00 30.10 3.06
678 729 0.735978 CGTACAGATGCAAGCGGTCA 60.736 55.000 0.00 0.00 30.10 4.02
679 730 1.421410 CCGTACAGATGCAAGCGGTC 61.421 60.000 0.00 0.00 30.10 4.79
680 731 1.447838 CCGTACAGATGCAAGCGGT 60.448 57.895 0.00 0.00 33.46 5.68
681 732 1.447838 ACCGTACAGATGCAAGCGG 60.448 57.895 0.00 1.20 44.10 5.52
682 733 1.014044 ACACCGTACAGATGCAAGCG 61.014 55.000 0.00 0.00 0.00 4.68
683 734 1.156736 AACACCGTACAGATGCAAGC 58.843 50.000 0.00 0.00 0.00 4.01
684 735 5.351233 TTTTAACACCGTACAGATGCAAG 57.649 39.130 0.00 0.00 0.00 4.01
685 736 5.752892 TTTTTAACACCGTACAGATGCAA 57.247 34.783 0.00 0.00 0.00 4.08
706 757 1.901833 GGGCATCACTGGGACATTTTT 59.098 47.619 0.00 0.00 38.20 1.94
707 758 1.560505 GGGCATCACTGGGACATTTT 58.439 50.000 0.00 0.00 38.20 1.82
708 759 0.680921 CGGGCATCACTGGGACATTT 60.681 55.000 0.00 0.00 38.20 2.32
709 760 1.077501 CGGGCATCACTGGGACATT 60.078 57.895 0.00 0.00 38.20 2.71
710 761 2.591753 CGGGCATCACTGGGACAT 59.408 61.111 0.00 0.00 38.20 3.06
711 762 3.716195 CCGGGCATCACTGGGACA 61.716 66.667 0.00 0.00 33.05 4.02
727 778 1.312815 AATGCTAGAAATCGGCAGCC 58.687 50.000 0.00 0.00 39.38 4.85
728 779 3.604772 CGTAAATGCTAGAAATCGGCAGC 60.605 47.826 0.00 4.69 39.38 5.25
729 780 3.604772 GCGTAAATGCTAGAAATCGGCAG 60.605 47.826 0.00 0.00 39.38 4.85
730 781 2.286833 GCGTAAATGCTAGAAATCGGCA 59.713 45.455 0.00 6.58 40.32 5.69
731 782 2.349532 GGCGTAAATGCTAGAAATCGGC 60.350 50.000 0.00 0.00 35.79 5.54
732 783 2.223377 GGGCGTAAATGCTAGAAATCGG 59.777 50.000 0.00 0.00 34.52 4.18
733 784 3.059597 CAGGGCGTAAATGCTAGAAATCG 60.060 47.826 0.00 0.00 34.52 3.34
734 785 3.251004 CCAGGGCGTAAATGCTAGAAATC 59.749 47.826 0.00 0.00 34.52 2.17
735 786 3.214328 CCAGGGCGTAAATGCTAGAAAT 58.786 45.455 0.00 0.00 34.52 2.17
736 787 2.639065 CCAGGGCGTAAATGCTAGAAA 58.361 47.619 0.00 0.00 34.52 2.52
737 788 1.745827 GCCAGGGCGTAAATGCTAGAA 60.746 52.381 0.00 0.00 34.52 2.10
738 789 0.179056 GCCAGGGCGTAAATGCTAGA 60.179 55.000 0.00 0.00 34.52 2.43
739 790 2.321213 GCCAGGGCGTAAATGCTAG 58.679 57.895 0.00 0.00 34.52 3.42
740 791 4.551729 GCCAGGGCGTAAATGCTA 57.448 55.556 0.00 0.00 34.52 3.49
751 802 3.391665 CTAGCCCAACGAGCCAGGG 62.392 68.421 0.00 0.00 45.68 4.45
798 849 2.274645 CCGTGCAGCCCATTTTGGA 61.275 57.895 0.00 0.00 40.96 3.53
854 905 4.506255 GGCCAGAACGGATGGGGG 62.506 72.222 0.00 0.00 38.33 5.40
918 981 4.156190 GCTCTAAAACCTAGCAAAGAACCC 59.844 45.833 0.00 0.00 36.26 4.11
1230 1293 1.227031 GTGGTCGTCGTTGGTGTCA 60.227 57.895 0.00 0.00 0.00 3.58
1251 1314 2.276732 TGGAACCCTTGCTCTTCTTG 57.723 50.000 0.00 0.00 0.00 3.02
1401 1470 4.088351 TCCTCCTCGGATGCCCCA 62.088 66.667 0.00 0.00 36.69 4.96
1587 1656 1.591703 GCATGAGACGACCACTCCA 59.408 57.895 0.00 0.00 33.95 3.86
1695 1764 4.159693 TGGTGGTACTACTAGACATTGCAG 59.840 45.833 9.41 0.00 0.00 4.41
1760 1829 0.968405 GGGCCTGTTCAAGCAATGAA 59.032 50.000 0.84 1.23 45.71 2.57
1761 1830 1.243342 CGGGCCTGTTCAAGCAATGA 61.243 55.000 2.29 0.00 35.85 2.57
1762 1831 1.213537 CGGGCCTGTTCAAGCAATG 59.786 57.895 2.29 0.00 0.00 2.82
1777 1854 4.392445 TCAACGGTTTACATATTGAACGGG 59.608 41.667 0.00 0.00 0.00 5.28
1778 1855 5.533533 TCAACGGTTTACATATTGAACGG 57.466 39.130 0.00 0.00 0.00 4.44
1797 1874 7.388776 CACTGAATGTATTCCAAGAGACTTCAA 59.611 37.037 2.41 0.00 35.97 2.69
1873 1950 8.976353 ACTGTATCTGAGACTAGTGATTGAAAT 58.024 33.333 0.00 0.00 0.00 2.17
1874 1951 8.354711 ACTGTATCTGAGACTAGTGATTGAAA 57.645 34.615 0.00 0.00 0.00 2.69
1879 1956 9.230122 CATGATACTGTATCTGAGACTAGTGAT 57.770 37.037 23.96 0.00 36.17 3.06
1952 2037 7.669427 ACAACAGAAAATGAATTAGGATTGCA 58.331 30.769 0.00 0.00 0.00 4.08
1953 2038 8.031277 AGACAACAGAAAATGAATTAGGATTGC 58.969 33.333 0.00 0.00 0.00 3.56
1988 2075 1.880340 CGGGCTCGCAGCTCTTTAG 60.880 63.158 0.00 0.00 40.30 1.85
1999 2086 4.506886 AGATATAAGAAACTCGGGCTCG 57.493 45.455 0.00 0.00 37.82 5.03
2238 2325 9.868277 CAGTAAATAAAATTTGTGAGGCCATTA 57.132 29.630 5.01 0.00 0.00 1.90
2239 2326 8.374743 ACAGTAAATAAAATTTGTGAGGCCATT 58.625 29.630 5.01 0.00 0.00 3.16
2240 2327 7.906327 ACAGTAAATAAAATTTGTGAGGCCAT 58.094 30.769 5.01 0.00 0.00 4.40
2252 2339 9.686683 ATGCTAGGACTTGACAGTAAATAAAAT 57.313 29.630 0.00 0.00 31.22 1.82
2378 2465 7.287005 ACTTGATATGGTACCTCGAATAGAACA 59.713 37.037 14.36 2.66 0.00 3.18
2402 2489 8.705594 ACTAAATATAGTTACCTGTGCATCACT 58.294 33.333 0.00 0.00 39.36 3.41
2496 2583 6.017933 CGAGAAGTAACAGAATCATTTGTGC 58.982 40.000 0.00 0.00 29.38 4.57
2500 2587 6.183360 CGCTTCGAGAAGTAACAGAATCATTT 60.183 38.462 13.58 0.00 40.45 2.32
2524 2611 1.135603 ACATGCTGTGCTACAAATGCG 60.136 47.619 0.00 0.00 29.87 4.73
2562 2649 6.210584 TCCAATTACCTTTGATGTCTTTTCCC 59.789 38.462 0.00 0.00 0.00 3.97
2566 2653 8.960591 CATACTCCAATTACCTTTGATGTCTTT 58.039 33.333 0.00 0.00 0.00 2.52
2590 2677 2.586792 GGGCTTCTCCGTCTGCAT 59.413 61.111 0.00 0.00 34.94 3.96
2598 2685 1.090052 CGAATGAACGGGGCTTCTCC 61.090 60.000 0.00 0.00 0.00 3.71
2605 2692 2.373540 TGAAGTACGAATGAACGGGG 57.626 50.000 0.00 0.00 37.61 5.73
2617 2704 6.338146 TGCATGTCAGTAGGTAATGAAGTAC 58.662 40.000 0.00 0.00 31.64 2.73
2634 2721 8.207039 GAATCATGAATTCAGGACATGCATGTC 61.207 40.741 39.96 39.96 46.73 3.06
2697 2784 5.413833 CAGTGTCCTGAGTAATCAGCAAAAT 59.586 40.000 14.68 0.00 41.50 1.82
2810 2910 2.349817 CGCTTCATTATCATTCACGGCC 60.350 50.000 0.00 0.00 0.00 6.13
2921 3021 9.796062 CACAAAAAGAAATATTGAAATGGTTCG 57.204 29.630 0.00 0.00 36.46 3.95
3346 3446 8.422973 TCAGATTGAAAAGTTTTGAAATGTGG 57.577 30.769 19.76 9.61 0.00 4.17
3347 3447 9.304731 TCTCAGATTGAAAAGTTTTGAAATGTG 57.695 29.630 5.36 13.06 0.00 3.21
3348 3448 9.874205 TTCTCAGATTGAAAAGTTTTGAAATGT 57.126 25.926 5.36 1.88 0.00 2.71
3353 3453 9.874205 ACATTTTCTCAGATTGAAAAGTTTTGA 57.126 25.926 5.36 0.00 43.63 2.69
3355 3455 9.657419 ACACATTTTCTCAGATTGAAAAGTTTT 57.343 25.926 0.00 0.00 43.63 2.43
3460 3575 5.028375 GCAATTAGATACAAAGGAACACGC 58.972 41.667 0.00 0.00 0.00 5.34
3462 3577 6.030228 GCTGCAATTAGATACAAAGGAACAC 58.970 40.000 0.00 0.00 0.00 3.32
3540 3655 5.300969 ACACAATCTCAAATTCATCCACG 57.699 39.130 0.00 0.00 0.00 4.94
3543 3658 6.029346 ACCAACACAATCTCAAATTCATCC 57.971 37.500 0.00 0.00 0.00 3.51
3546 3661 4.556501 GCGACCAACACAATCTCAAATTCA 60.557 41.667 0.00 0.00 0.00 2.57
3580 3695 6.775088 TCTCAACATAATCGTCAAATGAAGC 58.225 36.000 0.00 0.00 0.00 3.86
3617 3732 1.372499 GCAACCGTGTGACGAGCTA 60.372 57.895 0.00 0.00 46.05 3.32
3751 3866 6.072618 GGAATATTGCATCAGGAGTGATTCTG 60.073 42.308 1.54 0.00 40.84 3.02
3794 3909 1.666888 GCTGACAAAATTGCTCGGTGG 60.667 52.381 0.00 0.00 0.00 4.61
3818 3933 6.153680 TGGAAAAGAAGAAGGCAAAACACTTA 59.846 34.615 0.00 0.00 0.00 2.24
3958 4074 8.826710 CGCAACAGTTCCTTTCAGATAATAATA 58.173 33.333 0.00 0.00 0.00 0.98
3959 4075 7.552687 TCGCAACAGTTCCTTTCAGATAATAAT 59.447 33.333 0.00 0.00 0.00 1.28
3960 4076 6.876789 TCGCAACAGTTCCTTTCAGATAATAA 59.123 34.615 0.00 0.00 0.00 1.40
4088 4206 4.034510 GCCTTCCATTCAAGAAGACGTATG 59.965 45.833 2.16 0.00 42.80 2.39
4133 4251 0.175073 CCCCGAAGAAGAACCCGTAG 59.825 60.000 0.00 0.00 0.00 3.51
4152 4270 1.000145 GAGTTTCCCGCGAAGATGTC 59.000 55.000 8.23 0.00 0.00 3.06
4232 4350 1.227497 GGAGCGAGGAGGAGCATTG 60.227 63.158 0.00 0.00 35.48 2.82
4383 4501 4.204028 ACCAGCACCACCCGCTTT 62.204 61.111 0.00 0.00 37.72 3.51
4741 4859 1.194121 AGCCCCTGCAAACAAATCCC 61.194 55.000 0.00 0.00 41.13 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.