Multiple sequence alignment - TraesCS4A01G184000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G184000 chr4A 100.000 3332 0 0 1 3332 462212955 462209624 0.000000e+00 6154.0
1 TraesCS4A01G184000 chr4A 83.410 217 27 7 442 655 38228274 38228064 3.390000e-45 193.0
2 TraesCS4A01G184000 chr4D 93.924 2913 128 19 442 3330 115054756 115057643 0.000000e+00 4353.0
3 TraesCS4A01G184000 chr4D 97.288 295 6 2 1 293 115054077 115054371 1.780000e-137 499.0
4 TraesCS4A01G184000 chr4B 94.029 2579 124 13 773 3332 175543984 175546551 0.000000e+00 3882.0
5 TraesCS4A01G184000 chr4B 92.213 244 15 2 1 240 175543208 175543451 3.180000e-90 342.0
6 TraesCS4A01G184000 chr4B 96.610 59 2 0 656 714 175543544 175543602 7.610000e-17 99.0
7 TraesCS4A01G184000 chr4B 96.429 56 1 1 241 295 175543498 175543553 1.270000e-14 91.6
8 TraesCS4A01G184000 chr2D 83.178 214 32 4 444 655 481610917 481610706 3.390000e-45 193.0
9 TraesCS4A01G184000 chr5A 85.326 184 22 4 473 654 40155624 40155804 5.680000e-43 185.0
10 TraesCS4A01G184000 chr2B 80.973 226 33 9 443 662 621066058 621066279 1.590000e-38 171.0
11 TraesCS4A01G184000 chr2B 84.762 105 12 4 510 611 624888856 624888753 5.880000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G184000 chr4A 462209624 462212955 3331 True 6154.00 6154 100.00000 1 3332 1 chr4A.!!$R2 3331
1 TraesCS4A01G184000 chr4D 115054077 115057643 3566 False 2426.00 4353 95.60600 1 3330 2 chr4D.!!$F1 3329
2 TraesCS4A01G184000 chr4B 175543208 175546551 3343 False 1103.65 3882 94.82025 1 3332 4 chr4B.!!$F1 3331

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
319 422 0.033699 AAGATTTGGAGCTCCTGGGC 60.034 55.0 32.28 18.93 36.82 5.36 F
1116 1413 0.034767 TTCTCTTCCTCCTCGCCGTA 60.035 55.0 0.00 0.00 0.00 4.02 F
1473 1770 0.040646 ACTCCGTCAGGGTGTCCATA 59.959 55.0 0.00 0.00 38.05 2.74 F
1899 2196 0.390340 GAGCAGAGATCACCGTGCAA 60.390 55.0 7.04 0.00 38.44 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2136 2433 0.179045 ACTTCACAGCACCACCACTC 60.179 55.000 0.00 0.0 0.0 3.51 R
2293 2591 0.321919 GACAATGGAGCAGCAGGTGA 60.322 55.000 3.02 0.0 0.0 4.02 R
2306 2604 1.821753 AGGACTCGGACTCAGACAATG 59.178 52.381 0.00 0.0 0.0 2.82 R
2806 3111 3.292492 TCTCCTAAGTCATACGGCTGA 57.708 47.619 0.00 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.680921 CCATTTGGGCAGATGGTCGT 60.681 55.000 0.00 0.00 38.04 4.34
101 102 6.901300 TGTACAGAGGTAATTAACATCTCCCT 59.099 38.462 2.78 0.00 45.96 4.20
104 105 7.339482 ACAGAGGTAATTAACATCTCCCTTTC 58.661 38.462 2.78 0.00 45.96 2.62
149 154 2.027561 TCCATTTCTTGGTGGGAGTACG 60.028 50.000 0.00 0.00 46.52 3.67
212 217 4.885907 ACTGATGTAAATGGCATCTTCCTG 59.114 41.667 0.00 0.00 42.21 3.86
231 236 8.923270 TCTTCCTGGTTTTTATTTGTGAAGATT 58.077 29.630 0.00 0.00 32.96 2.40
312 415 5.456921 TTATGGGAAGAAGATTTGGAGCT 57.543 39.130 0.00 0.00 0.00 4.09
316 419 3.277715 GGAAGAAGATTTGGAGCTCCTG 58.722 50.000 32.28 0.00 36.82 3.86
317 420 3.277715 GAAGAAGATTTGGAGCTCCTGG 58.722 50.000 32.28 0.00 36.82 4.45
319 422 0.033699 AAGATTTGGAGCTCCTGGGC 60.034 55.000 32.28 18.93 36.82 5.36
320 423 1.821332 GATTTGGAGCTCCTGGGCG 60.821 63.158 32.28 0.00 37.29 6.13
345 589 7.392113 CGCACCCCCTATATGAACATTAAATTA 59.608 37.037 0.00 0.00 0.00 1.40
397 644 6.493166 TCTGGGATTTTGGATATCAAACTGT 58.507 36.000 4.83 0.00 44.20 3.55
398 645 6.377996 TCTGGGATTTTGGATATCAAACTGTG 59.622 38.462 4.83 0.00 44.20 3.66
410 657 4.314740 TCAAACTGTGTGCCCAATAAAC 57.685 40.909 0.00 0.00 0.00 2.01
414 661 2.158534 ACTGTGTGCCCAATAAACTCCA 60.159 45.455 0.00 0.00 0.00 3.86
416 663 1.202348 GTGTGCCCAATAAACTCCAGC 59.798 52.381 0.00 0.00 0.00 4.85
419 666 0.451783 GCCCAATAAACTCCAGCGTG 59.548 55.000 0.00 0.00 0.00 5.34
425 672 4.378459 CCAATAAACTCCAGCGTGAAGTTC 60.378 45.833 0.00 0.00 0.00 3.01
429 676 1.151668 CTCCAGCGTGAAGTTCCTTG 58.848 55.000 0.00 0.00 0.00 3.61
492 783 3.950397 TGGACTGTATTTTCTTCGCCAT 58.050 40.909 0.00 0.00 0.00 4.40
494 785 5.680619 TGGACTGTATTTTCTTCGCCATAT 58.319 37.500 0.00 0.00 0.00 1.78
509 800 8.536175 TCTTCGCCATATATACATTTCATGGTA 58.464 33.333 0.00 0.00 38.72 3.25
574 865 7.260603 CCAAGTTTGATATCCCAAGATTTCAC 58.739 38.462 0.00 0.00 39.33 3.18
704 997 9.607285 GTTTCAACAGTATTATTTGTGTACTGG 57.393 33.333 14.14 0.96 45.92 4.00
726 1019 9.533831 ACTGGATAATTTGTTTAGAATGTTCCT 57.466 29.630 0.00 0.00 0.00 3.36
749 1042 3.431673 TGTGATGTGTATGCTCCCAAA 57.568 42.857 0.00 0.00 0.00 3.28
753 1046 2.093306 TGTGTATGCTCCCAAACTCG 57.907 50.000 0.00 0.00 0.00 4.18
768 1061 2.094762 ACTCGGTGGTTATCAACTGC 57.905 50.000 0.00 0.00 0.00 4.40
784 1077 2.255406 ACTGCTGACTGGTGAGAGATT 58.745 47.619 0.00 0.00 0.00 2.40
793 1086 1.471287 TGGTGAGAGATTACGTGGACG 59.529 52.381 0.00 0.00 46.33 4.79
795 1088 0.454600 TGAGAGATTACGTGGACGGC 59.545 55.000 0.00 0.00 44.95 5.68
800 1093 1.138047 GATTACGTGGACGGCGACAG 61.138 60.000 16.62 5.50 44.95 3.51
890 1184 1.588403 CGTCATCCTCGAGCAGCTG 60.588 63.158 10.11 10.11 0.00 4.24
949 1243 1.315690 TCGCTCCATTCCCTACGTAG 58.684 55.000 15.92 15.92 0.00 3.51
951 1245 2.158769 TCGCTCCATTCCCTACGTAGTA 60.159 50.000 20.73 6.33 45.11 1.82
1114 1411 1.435515 CTTCTCTTCCTCCTCGCCG 59.564 63.158 0.00 0.00 0.00 6.46
1116 1413 0.034767 TTCTCTTCCTCCTCGCCGTA 60.035 55.000 0.00 0.00 0.00 4.02
1362 1659 1.153168 CCTTATCCGGCACTGGGTG 60.153 63.158 0.00 0.00 36.51 4.61
1473 1770 0.040646 ACTCCGTCAGGGTGTCCATA 59.959 55.000 0.00 0.00 38.05 2.74
1488 1785 2.281345 ATATCGCTGCTGCTGCCC 60.281 61.111 23.04 3.32 38.71 5.36
1539 1836 0.960364 TCCAGGTCCAAATTCGCAGC 60.960 55.000 0.00 0.00 0.00 5.25
1558 1855 4.752146 CAGCCCAAATCTCTTGGAATTTC 58.248 43.478 5.07 0.00 42.06 2.17
1565 1862 6.154021 CCAAATCTCTTGGAATTTCACCTGAT 59.846 38.462 0.00 0.00 42.06 2.90
1579 1876 3.713248 TCACCTGATCATCTGCAACCTAT 59.287 43.478 0.00 0.00 0.00 2.57
1583 1880 4.514441 CCTGATCATCTGCAACCTATTGAC 59.486 45.833 0.00 0.00 38.15 3.18
1899 2196 0.390340 GAGCAGAGATCACCGTGCAA 60.390 55.000 7.04 0.00 38.44 4.08
1902 2199 1.800805 CAGAGATCACCGTGCAAACT 58.199 50.000 0.00 0.00 0.00 2.66
2019 2316 2.358737 CGTTGGGTCTGGCCACTC 60.359 66.667 0.00 0.00 39.65 3.51
2136 2433 1.343789 AGCTCACATGAGGGATCATCG 59.656 52.381 10.81 0.00 42.29 3.84
2139 2436 2.627221 CTCACATGAGGGATCATCGAGT 59.373 50.000 0.00 0.00 38.48 4.18
2187 2484 0.676151 GAGGCAGGAGGAAAGCACAG 60.676 60.000 0.00 0.00 0.00 3.66
2188 2485 1.130054 AGGCAGGAGGAAAGCACAGA 61.130 55.000 0.00 0.00 0.00 3.41
2195 2492 2.224314 GGAGGAAAGCACAGAAAACGAG 59.776 50.000 0.00 0.00 0.00 4.18
2202 2499 1.238439 CACAGAAAACGAGGCATGGT 58.762 50.000 0.00 0.00 0.00 3.55
2271 2568 2.636893 AGTGGCTGAGACTGATGAAGTT 59.363 45.455 0.00 0.00 40.07 2.66
2293 2591 1.725557 CGACGACGATCATGGGGAGT 61.726 60.000 0.00 0.00 42.66 3.85
2306 2604 2.267324 GGAGTCACCTGCTGCTCC 59.733 66.667 0.00 0.00 36.58 4.70
2313 2611 0.322277 CACCTGCTGCTCCATTGTCT 60.322 55.000 0.00 0.00 0.00 3.41
2315 2613 0.035725 CCTGCTGCTCCATTGTCTGA 60.036 55.000 0.00 0.00 0.00 3.27
2325 2623 1.134965 CCATTGTCTGAGTCCGAGTCC 60.135 57.143 0.62 0.00 0.00 3.85
2348 2646 2.802816 GTTAGTTCAGTCAGTGCAGTGG 59.197 50.000 21.21 5.84 0.00 4.00
2370 2668 2.030007 GCTGCAAAGTTTATGCTGACCA 60.030 45.455 9.79 0.00 43.08 4.02
2372 2670 4.418392 CTGCAAAGTTTATGCTGACCATC 58.582 43.478 1.49 0.00 43.08 3.51
2420 2718 0.105778 GGAGATCTGAAGGGCTTCCG 59.894 60.000 0.00 0.00 38.77 4.30
2424 2722 1.841302 ATCTGAAGGGCTTCCGTGCA 61.841 55.000 0.00 0.00 38.77 4.57
2443 2741 6.742999 GTGCAGAACGACATATAATAACGA 57.257 37.500 0.00 0.00 0.00 3.85
2555 2856 6.039616 GCTTTTAGTGTTTGGTTGACATGAA 58.960 36.000 0.00 0.00 0.00 2.57
2617 2920 4.777896 TGAGGATGGAGTAGTAGCTTGTTT 59.222 41.667 0.00 0.00 0.00 2.83
2664 2969 6.261826 GCCTCTCAGCAATTATATGTCTTTGT 59.738 38.462 0.00 0.00 0.00 2.83
2714 3019 3.438087 CACTTGCTTTCCTGTGATACCTG 59.562 47.826 0.00 0.00 32.72 4.00
2721 3026 5.705905 GCTTTCCTGTGATACCTGTTTTACT 59.294 40.000 0.00 0.00 0.00 2.24
2747 3052 9.593134 TGCTAATTGTATTGTGTTTTCTTTTGT 57.407 25.926 0.00 0.00 0.00 2.83
2754 3059 9.442047 TGTATTGTGTTTTCTTTTGTTTGGATT 57.558 25.926 0.00 0.00 0.00 3.01
2811 3116 9.706846 GCATTTTATGTGAATTATTTTTCAGCC 57.293 29.630 0.00 0.00 36.34 4.85
2817 3133 7.384439 TGTGAATTATTTTTCAGCCGTATGA 57.616 32.000 0.00 0.00 36.34 2.15
2837 3153 6.581388 ATGACTTAGGAGATGAAAATGGGA 57.419 37.500 0.00 0.00 0.00 4.37
2847 3163 9.942526 AGGAGATGAAAATGGGAAATATAAAGT 57.057 29.630 0.00 0.00 0.00 2.66
2871 3187 9.998106 AGTTTGTAACTCAGATAATGTACAGTT 57.002 29.630 0.00 0.00 37.02 3.16
3030 3360 4.916041 AGATGACAGGGACAATTTCAGA 57.084 40.909 0.00 0.00 0.00 3.27
3054 3384 3.047796 CAGCGAGCCATATCATTTTTGC 58.952 45.455 0.00 0.00 0.00 3.68
3060 3390 5.121611 CGAGCCATATCATTTTTGCGGTATA 59.878 40.000 0.00 0.00 0.00 1.47
3063 3394 6.072508 AGCCATATCATTTTTGCGGTATACAG 60.073 38.462 5.01 1.36 0.00 2.74
3242 3573 9.599322 CATTTTCTTCGCCAACTAATCATATAC 57.401 33.333 0.00 0.00 0.00 1.47
3300 3631 0.815213 TGGCTTACCGATGCATGCTC 60.815 55.000 20.33 12.61 39.70 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.968263 TTCTGTTGATTTTGTGATGGGTAA 57.032 33.333 0.00 0.00 0.00 2.85
104 105 7.113544 GGAAGATGTTTCTTTTTACAGCGAAAG 59.886 37.037 0.00 0.00 42.34 2.62
149 154 8.005192 AGCTCAATTCATTTTCCTTAAGGATC 57.995 34.615 24.82 0.00 44.98 3.36
301 404 1.611965 GCCCAGGAGCTCCAAATCT 59.388 57.895 33.90 10.85 38.89 2.40
317 420 0.605589 GTTCATATAGGGGGTGCGCC 60.606 60.000 8.12 8.12 36.67 6.53
319 422 2.859165 ATGTTCATATAGGGGGTGCG 57.141 50.000 0.00 0.00 0.00 5.34
320 423 7.539034 AATTTAATGTTCATATAGGGGGTGC 57.461 36.000 0.00 0.00 0.00 5.01
397 644 1.544724 GCTGGAGTTTATTGGGCACA 58.455 50.000 0.00 0.00 0.00 4.57
398 645 0.451783 CGCTGGAGTTTATTGGGCAC 59.548 55.000 0.00 0.00 0.00 5.01
447 738 5.874093 ACCTATGATCCATCCAGACAATTC 58.126 41.667 0.00 0.00 0.00 2.17
450 741 4.141413 CCAACCTATGATCCATCCAGACAA 60.141 45.833 0.00 0.00 0.00 3.18
454 745 3.649981 AGTCCAACCTATGATCCATCCAG 59.350 47.826 0.00 0.00 0.00 3.86
574 865 8.587952 AAATACCAGGAAAATTCAGAAAAACG 57.412 30.769 0.00 0.00 0.00 3.60
701 994 9.793252 CAGGAACATTCTAAACAAATTATCCAG 57.207 33.333 0.00 0.00 0.00 3.86
702 995 9.308000 ACAGGAACATTCTAAACAAATTATCCA 57.692 29.630 0.00 0.00 0.00 3.41
707 1000 8.474025 TCACAACAGGAACATTCTAAACAAATT 58.526 29.630 0.00 0.00 0.00 1.82
708 1001 8.006298 TCACAACAGGAACATTCTAAACAAAT 57.994 30.769 0.00 0.00 0.00 2.32
710 1003 7.068103 ACATCACAACAGGAACATTCTAAACAA 59.932 33.333 0.00 0.00 0.00 2.83
712 1005 6.857964 CACATCACAACAGGAACATTCTAAAC 59.142 38.462 0.00 0.00 0.00 2.01
714 1007 6.061441 ACACATCACAACAGGAACATTCTAA 58.939 36.000 0.00 0.00 0.00 2.10
715 1008 5.620206 ACACATCACAACAGGAACATTCTA 58.380 37.500 0.00 0.00 0.00 2.10
717 1010 4.836125 ACACATCACAACAGGAACATTC 57.164 40.909 0.00 0.00 0.00 2.67
719 1012 4.156556 GCATACACATCACAACAGGAACAT 59.843 41.667 0.00 0.00 0.00 2.71
720 1013 3.501828 GCATACACATCACAACAGGAACA 59.498 43.478 0.00 0.00 0.00 3.18
721 1014 3.753272 AGCATACACATCACAACAGGAAC 59.247 43.478 0.00 0.00 0.00 3.62
722 1015 4.002982 GAGCATACACATCACAACAGGAA 58.997 43.478 0.00 0.00 0.00 3.36
726 1019 2.039613 TGGGAGCATACACATCACAACA 59.960 45.455 0.00 0.00 0.00 3.33
729 1022 3.081061 GTTTGGGAGCATACACATCACA 58.919 45.455 0.00 0.00 0.00 3.58
749 1042 1.623811 AGCAGTTGATAACCACCGAGT 59.376 47.619 0.00 0.00 0.00 4.18
753 1046 2.744202 CAGTCAGCAGTTGATAACCACC 59.256 50.000 0.00 0.00 38.29 4.61
768 1061 3.428180 CCACGTAATCTCTCACCAGTCAG 60.428 52.174 0.00 0.00 0.00 3.51
784 1077 2.669229 TCTGTCGCCGTCCACGTA 60.669 61.111 0.00 0.00 37.74 3.57
890 1184 1.779025 CGCATGCAGTAGCCATGTCC 61.779 60.000 19.57 0.00 41.13 4.02
949 1243 1.437986 CAGGAGCCTAGCACCGTAC 59.562 63.158 0.00 0.00 43.81 3.67
950 1244 1.756950 CCAGGAGCCTAGCACCGTA 60.757 63.158 0.00 0.00 43.81 4.02
951 1245 3.077556 CCAGGAGCCTAGCACCGT 61.078 66.667 0.00 0.00 43.81 4.83
987 1281 3.554716 TCCATCGGGGATGAGCTG 58.445 61.111 7.16 0.00 42.09 4.24
1085 1382 2.837371 GAAGAGAAGGGTGTCGCCGG 62.837 65.000 0.00 0.00 38.44 6.13
1114 1411 4.840005 GAGCCAGCCTGCCGGTAC 62.840 72.222 1.90 0.00 0.00 3.34
1382 1679 1.677966 TCGAAGTAGAGCGGCTGGT 60.678 57.895 7.50 0.00 0.00 4.00
1461 1758 0.882042 GCAGCGATATGGACACCCTG 60.882 60.000 0.00 0.00 0.00 4.45
1488 1785 2.430244 CGGTTGTGGTCGGAGTCG 60.430 66.667 0.00 0.00 37.82 4.18
1539 1836 4.774200 AGGTGAAATTCCAAGAGATTTGGG 59.226 41.667 6.13 0.00 39.96 4.12
1558 1855 2.414994 AGGTTGCAGATGATCAGGTG 57.585 50.000 0.09 1.96 0.00 4.00
1565 1862 4.517285 GGAAGTCAATAGGTTGCAGATGA 58.483 43.478 0.00 0.00 35.26 2.92
1579 1876 5.701224 AGGTTTTAACAGATGGGAAGTCAA 58.299 37.500 0.00 0.00 0.00 3.18
1583 1880 5.070001 TGTGAGGTTTTAACAGATGGGAAG 58.930 41.667 0.00 0.00 0.00 3.46
1707 2004 1.738099 GATTGTCAGCGCGGACTGT 60.738 57.895 34.49 24.77 38.84 3.55
1779 2076 1.078143 GCCTTCCCAGTACTGCAGG 60.078 63.158 19.93 20.12 0.00 4.85
1899 2196 0.537143 TGAACCATGGAAGCGCAGTT 60.537 50.000 21.47 0.00 0.00 3.16
1902 2199 1.243342 CCTTGAACCATGGAAGCGCA 61.243 55.000 21.47 5.72 31.33 6.09
2136 2433 0.179045 ACTTCACAGCACCACCACTC 60.179 55.000 0.00 0.00 0.00 3.51
2139 2436 1.152984 CCACTTCACAGCACCACCA 60.153 57.895 0.00 0.00 0.00 4.17
2187 2484 1.212751 GCCACCATGCCTCGTTTTC 59.787 57.895 0.00 0.00 0.00 2.29
2188 2485 0.899717 ATGCCACCATGCCTCGTTTT 60.900 50.000 0.00 0.00 0.00 2.43
2195 2492 1.952102 CTCAACCATGCCACCATGCC 61.952 60.000 0.00 0.00 45.97 4.40
2202 2499 1.246056 GCTTGAGCTCAACCATGCCA 61.246 55.000 25.16 2.47 38.21 4.92
2232 2529 1.742831 ACTGCAGAGCTAGAAGACGAG 59.257 52.381 23.35 0.00 0.00 4.18
2293 2591 0.321919 GACAATGGAGCAGCAGGTGA 60.322 55.000 3.02 0.00 0.00 4.02
2306 2604 1.821753 AGGACTCGGACTCAGACAATG 59.178 52.381 0.00 0.00 0.00 2.82
2313 2611 2.581216 ACTAACAGGACTCGGACTCA 57.419 50.000 0.00 0.00 0.00 3.41
2315 2613 2.820787 CTGAACTAACAGGACTCGGACT 59.179 50.000 0.00 0.00 34.64 3.85
2325 2623 3.492383 CACTGCACTGACTGAACTAACAG 59.508 47.826 0.00 0.00 42.78 3.16
2348 2646 2.599659 GTCAGCATAAACTTTGCAGCC 58.400 47.619 0.00 0.00 42.62 4.85
2353 2651 4.944962 TCGATGGTCAGCATAAACTTTG 57.055 40.909 0.00 0.00 0.00 2.77
2370 2668 3.122948 GCGTGTAACAAACTGTGATCGAT 59.877 43.478 0.00 0.00 35.74 3.59
2372 2670 2.411031 GGCGTGTAACAAACTGTGATCG 60.411 50.000 0.00 0.00 35.74 3.69
2420 2718 6.742999 TCGTTATTATATGTCGTTCTGCAC 57.257 37.500 0.00 0.00 0.00 4.57
2555 2856 3.515901 GACCAAAGGAGACCATAGACAGT 59.484 47.826 0.00 0.00 0.00 3.55
2560 2861 3.515502 TCTGTGACCAAAGGAGACCATAG 59.484 47.826 0.00 0.00 0.00 2.23
2617 2920 2.432874 TGACCTGAAAGTCTGAAACGGA 59.567 45.455 0.00 0.00 37.66 4.69
2721 3026 9.593134 ACAAAAGAAAACACAATACAATTAGCA 57.407 25.926 0.00 0.00 0.00 3.49
2796 3101 9.651718 CTAAGTCATACGGCTGAAAAATAATTC 57.348 33.333 0.00 0.00 0.00 2.17
2797 3102 8.621286 CCTAAGTCATACGGCTGAAAAATAATT 58.379 33.333 0.00 0.00 0.00 1.40
2798 3103 7.990886 TCCTAAGTCATACGGCTGAAAAATAAT 59.009 33.333 0.00 0.00 0.00 1.28
2799 3104 7.332557 TCCTAAGTCATACGGCTGAAAAATAA 58.667 34.615 0.00 0.00 0.00 1.40
2800 3105 6.880484 TCCTAAGTCATACGGCTGAAAAATA 58.120 36.000 0.00 0.00 0.00 1.40
2801 3106 5.741011 TCCTAAGTCATACGGCTGAAAAAT 58.259 37.500 0.00 0.00 0.00 1.82
2802 3107 5.046878 TCTCCTAAGTCATACGGCTGAAAAA 60.047 40.000 0.00 0.00 0.00 1.94
2803 3108 4.464951 TCTCCTAAGTCATACGGCTGAAAA 59.535 41.667 0.00 0.00 0.00 2.29
2804 3109 4.021229 TCTCCTAAGTCATACGGCTGAAA 58.979 43.478 0.00 0.00 0.00 2.69
2805 3110 3.628008 TCTCCTAAGTCATACGGCTGAA 58.372 45.455 0.00 0.00 0.00 3.02
2806 3111 3.292492 TCTCCTAAGTCATACGGCTGA 57.708 47.619 0.00 0.00 0.00 4.26
2807 3112 3.570125 TCATCTCCTAAGTCATACGGCTG 59.430 47.826 0.00 0.00 0.00 4.85
2811 3116 6.425114 CCCATTTTCATCTCCTAAGTCATACG 59.575 42.308 0.00 0.00 0.00 3.06
2845 3161 9.998106 AACTGTACATTATCTGAGTTACAAACT 57.002 29.630 0.00 0.00 46.38 2.66
2871 3187 5.106317 GCGAAGTTGGATTTTCAACCATCTA 60.106 40.000 4.37 0.00 45.81 1.98
2906 3222 4.502962 CCATAAACCGGCAAAATTCATGT 58.497 39.130 0.00 0.00 0.00 3.21
2978 3307 4.222588 ACTCCTCTCTGAAGGAAGTTGATG 59.777 45.833 9.02 1.35 44.81 3.07
2979 3308 4.424842 ACTCCTCTCTGAAGGAAGTTGAT 58.575 43.478 9.02 0.00 44.81 2.57
2980 3309 3.850752 ACTCCTCTCTGAAGGAAGTTGA 58.149 45.455 9.02 0.00 44.81 3.18
3030 3360 4.989279 AAAATGATATGGCTCGCTGTTT 57.011 36.364 0.00 0.00 0.00 2.83
3242 3573 8.543774 CAGAAGAGTTGGCTAAAAATATACTCG 58.456 37.037 0.00 0.00 36.54 4.18
3300 3631 4.508461 TGTCATGCAAAATCAGGACTTG 57.492 40.909 9.43 0.00 45.04 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.