Multiple sequence alignment - TraesCS4A01G183800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G183800 chr4A 100.000 4647 0 0 1 4647 462206391 462201745 0.000000e+00 8582.0
1 TraesCS4A01G183800 chr4A 92.143 1260 52 15 1956 3211 611199281 611200497 0.000000e+00 1735.0
2 TraesCS4A01G183800 chr4A 91.026 78 7 0 1841 1918 27665579 27665656 6.360000e-19 106.0
3 TraesCS4A01G183800 chr4D 94.283 1959 71 19 873 2801 115120955 115122902 0.000000e+00 2959.0
4 TraesCS4A01G183800 chr4D 94.237 1874 87 12 2785 4647 115123431 115125294 0.000000e+00 2843.0
5 TraesCS4A01G183800 chr4D 91.017 1258 49 31 1956 3211 447979498 447980693 0.000000e+00 1639.0
6 TraesCS4A01G183800 chr4D 86.550 342 28 10 111 452 115068037 115068360 1.230000e-95 361.0
7 TraesCS4A01G183800 chr4B 93.773 1606 57 15 716 2300 175560538 175562121 0.000000e+00 2372.0
8 TraesCS4A01G183800 chr4B 94.605 1520 57 7 2358 3855 175562146 175563662 0.000000e+00 2329.0
9 TraesCS4A01G183800 chr4B 95.107 797 28 5 3854 4647 175563775 175564563 0.000000e+00 1245.0
10 TraesCS4A01G183800 chr4B 90.571 350 29 3 106 452 175560185 175560533 1.180000e-125 460.0
11 TraesCS4A01G183800 chr2B 93.243 1258 46 13 1956 3211 654362830 654361610 0.000000e+00 1816.0
12 TraesCS4A01G183800 chr2B 91.398 186 16 0 532 717 655527033 655527218 5.970000e-64 255.0
13 TraesCS4A01G183800 chr2B 90.741 54 5 0 1701 1754 66199483 66199430 6.450000e-09 73.1
14 TraesCS4A01G183800 chr3D 90.359 1421 75 19 1888 3297 554391669 554393038 0.000000e+00 1808.0
15 TraesCS4A01G183800 chr7B 92.613 1259 50 20 1956 3211 686929106 686930324 0.000000e+00 1770.0
16 TraesCS4A01G183800 chr7B 91.712 917 55 10 1888 2791 109172678 109171770 0.000000e+00 1253.0
17 TraesCS4A01G183800 chr7B 91.022 323 23 4 2976 3297 109180132 109180449 9.240000e-117 431.0
18 TraesCS4A01G183800 chr7B 90.659 182 16 1 535 716 487043768 487043588 1.670000e-59 241.0
19 TraesCS4A01G183800 chr5B 91.905 1260 57 13 1956 3211 614981676 614980458 0.000000e+00 1720.0
20 TraesCS4A01G183800 chr5B 82.450 604 73 19 1662 2254 241200559 241199978 8.980000e-137 497.0
21 TraesCS4A01G183800 chr6D 89.635 1341 54 26 1888 3211 163352695 163353967 0.000000e+00 1628.0
22 TraesCS4A01G183800 chr2A 93.472 674 27 10 1956 2628 711070410 711071067 0.000000e+00 985.0
23 TraesCS4A01G183800 chr2A 91.809 586 25 7 2627 3211 711071160 711071723 0.000000e+00 795.0
24 TraesCS4A01G183800 chr2A 89.000 200 20 2 532 731 718829210 718829407 3.590000e-61 246.0
25 TraesCS4A01G183800 chr2A 90.374 187 17 1 532 718 756821928 756822113 1.290000e-60 244.0
26 TraesCS4A01G183800 chr5A 77.938 970 124 51 1336 2245 291605328 291604389 1.480000e-144 523.0
27 TraesCS4A01G183800 chr5A 90.811 185 16 1 532 716 523588717 523588900 3.590000e-61 246.0
28 TraesCS4A01G183800 chr5A 90.659 182 16 1 535 716 83550058 83550238 1.670000e-59 241.0
29 TraesCS4A01G183800 chr6B 92.350 183 13 1 535 717 564063818 564063637 4.610000e-65 259.0
30 TraesCS4A01G183800 chr1D 90.860 186 15 2 532 717 213551096 213551279 9.980000e-62 248.0
31 TraesCS4A01G183800 chr1A 90.811 185 16 1 532 716 583603937 583603754 3.590000e-61 246.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G183800 chr4A 462201745 462206391 4646 True 8582.0 8582 100.0000 1 4647 1 chr4A.!!$R1 4646
1 TraesCS4A01G183800 chr4A 611199281 611200497 1216 False 1735.0 1735 92.1430 1956 3211 1 chr4A.!!$F2 1255
2 TraesCS4A01G183800 chr4D 115120955 115125294 4339 False 2901.0 2959 94.2600 873 4647 2 chr4D.!!$F3 3774
3 TraesCS4A01G183800 chr4D 447979498 447980693 1195 False 1639.0 1639 91.0170 1956 3211 1 chr4D.!!$F2 1255
4 TraesCS4A01G183800 chr4B 175560185 175564563 4378 False 1601.5 2372 93.5140 106 4647 4 chr4B.!!$F1 4541
5 TraesCS4A01G183800 chr2B 654361610 654362830 1220 True 1816.0 1816 93.2430 1956 3211 1 chr2B.!!$R2 1255
6 TraesCS4A01G183800 chr3D 554391669 554393038 1369 False 1808.0 1808 90.3590 1888 3297 1 chr3D.!!$F1 1409
7 TraesCS4A01G183800 chr7B 686929106 686930324 1218 False 1770.0 1770 92.6130 1956 3211 1 chr7B.!!$F2 1255
8 TraesCS4A01G183800 chr7B 109171770 109172678 908 True 1253.0 1253 91.7120 1888 2791 1 chr7B.!!$R1 903
9 TraesCS4A01G183800 chr5B 614980458 614981676 1218 True 1720.0 1720 91.9050 1956 3211 1 chr5B.!!$R2 1255
10 TraesCS4A01G183800 chr5B 241199978 241200559 581 True 497.0 497 82.4500 1662 2254 1 chr5B.!!$R1 592
11 TraesCS4A01G183800 chr6D 163352695 163353967 1272 False 1628.0 1628 89.6350 1888 3211 1 chr6D.!!$F1 1323
12 TraesCS4A01G183800 chr2A 711070410 711071723 1313 False 890.0 985 92.6405 1956 3211 2 chr2A.!!$F3 1255
13 TraesCS4A01G183800 chr5A 291604389 291605328 939 True 523.0 523 77.9380 1336 2245 1 chr5A.!!$R1 909

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
468 471 0.034960 CTCCTGTCCCACTCTCTCGA 60.035 60.000 0.00 0.0 0.00 4.04 F
788 793 0.109272 CTCTCGAGCCAACGTGCTAA 60.109 55.000 7.81 0.0 42.95 3.09 F
1097 1123 0.179100 AGTGCGATCGGATGGTTCAG 60.179 55.000 18.30 0.0 0.00 3.02 F
2944 3765 1.064208 CGCTAGACATAGACTGTGCGT 59.936 52.381 0.00 0.0 38.54 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2258 2378 1.303155 GGCAGGGGCAGATGATAGC 60.303 63.158 0.0 0.0 43.71 2.97 R
2658 2920 1.819632 GCAGACACTATTGCCCCCG 60.820 63.158 0.0 0.0 34.28 5.73 R
3015 3836 2.698274 TCACACTCAAGTACTCAGGCAA 59.302 45.455 0.0 0.0 0.00 4.52 R
4317 5266 0.108585 ATCGGTGATTGGGGGAATCG 59.891 55.000 0.0 0.0 43.22 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 5.382664 TTTGAGGGGCTAAAAGTATAGGG 57.617 43.478 0.00 0.00 0.00 3.53
50 51 3.323775 TGAGGGGCTAAAAGTATAGGGG 58.676 50.000 0.00 0.00 0.00 4.79
51 52 3.050876 TGAGGGGCTAAAAGTATAGGGGA 60.051 47.826 0.00 0.00 0.00 4.81
52 53 4.176753 GAGGGGCTAAAAGTATAGGGGAT 58.823 47.826 0.00 0.00 0.00 3.85
53 54 4.588520 AGGGGCTAAAAGTATAGGGGATT 58.411 43.478 0.00 0.00 0.00 3.01
54 55 4.988882 AGGGGCTAAAAGTATAGGGGATTT 59.011 41.667 0.00 0.00 0.00 2.17
55 56 5.077564 GGGGCTAAAAGTATAGGGGATTTG 58.922 45.833 0.00 0.00 0.00 2.32
56 57 4.523173 GGGCTAAAAGTATAGGGGATTTGC 59.477 45.833 0.00 0.00 0.00 3.68
57 58 5.386060 GGCTAAAAGTATAGGGGATTTGCT 58.614 41.667 0.00 0.00 0.00 3.91
58 59 6.466759 GGGCTAAAAGTATAGGGGATTTGCTA 60.467 42.308 0.00 0.00 0.00 3.49
59 60 6.655425 GGCTAAAAGTATAGGGGATTTGCTAG 59.345 42.308 0.00 0.00 0.00 3.42
60 61 7.225011 GCTAAAAGTATAGGGGATTTGCTAGT 58.775 38.462 0.00 0.00 0.00 2.57
61 62 7.720074 GCTAAAAGTATAGGGGATTTGCTAGTT 59.280 37.037 0.00 0.00 0.00 2.24
62 63 7.881775 AAAAGTATAGGGGATTTGCTAGTTG 57.118 36.000 0.00 0.00 0.00 3.16
63 64 6.824958 AAGTATAGGGGATTTGCTAGTTGA 57.175 37.500 0.00 0.00 0.00 3.18
64 65 6.426646 AGTATAGGGGATTTGCTAGTTGAG 57.573 41.667 0.00 0.00 0.00 3.02
65 66 6.143915 AGTATAGGGGATTTGCTAGTTGAGA 58.856 40.000 0.00 0.00 0.00 3.27
66 67 5.975988 ATAGGGGATTTGCTAGTTGAGAA 57.024 39.130 0.00 0.00 0.00 2.87
67 68 4.657814 AGGGGATTTGCTAGTTGAGAAA 57.342 40.909 0.00 0.00 0.00 2.52
68 69 4.336280 AGGGGATTTGCTAGTTGAGAAAC 58.664 43.478 0.00 0.00 0.00 2.78
69 70 4.079253 GGGGATTTGCTAGTTGAGAAACA 58.921 43.478 0.00 0.00 0.00 2.83
70 71 4.522789 GGGGATTTGCTAGTTGAGAAACAA 59.477 41.667 0.00 0.00 36.02 2.83
71 72 5.185828 GGGGATTTGCTAGTTGAGAAACAAT 59.814 40.000 0.00 0.00 40.76 2.71
72 73 6.377146 GGGGATTTGCTAGTTGAGAAACAATA 59.623 38.462 0.00 0.00 40.76 1.90
73 74 7.415653 GGGGATTTGCTAGTTGAGAAACAATAG 60.416 40.741 0.00 0.00 40.76 1.73
74 75 7.121315 GGGATTTGCTAGTTGAGAAACAATAGT 59.879 37.037 0.00 0.00 40.76 2.12
75 76 8.515414 GGATTTGCTAGTTGAGAAACAATAGTT 58.485 33.333 0.00 0.00 40.76 2.24
76 77 9.548208 GATTTGCTAGTTGAGAAACAATAGTTC 57.452 33.333 0.00 0.00 40.76 3.01
77 78 7.435068 TTGCTAGTTGAGAAACAATAGTTCC 57.565 36.000 0.00 0.00 40.76 3.62
78 79 5.938125 TGCTAGTTGAGAAACAATAGTTCCC 59.062 40.000 0.00 0.00 40.76 3.97
79 80 6.174049 GCTAGTTGAGAAACAATAGTTCCCT 58.826 40.000 0.00 0.00 40.76 4.20
80 81 6.655425 GCTAGTTGAGAAACAATAGTTCCCTT 59.345 38.462 0.00 0.00 40.76 3.95
81 82 7.175119 GCTAGTTGAGAAACAATAGTTCCCTTT 59.825 37.037 0.00 0.00 40.76 3.11
82 83 9.720769 CTAGTTGAGAAACAATAGTTCCCTTTA 57.279 33.333 0.00 0.00 40.76 1.85
83 84 8.990163 AGTTGAGAAACAATAGTTCCCTTTAA 57.010 30.769 0.00 0.00 40.76 1.52
84 85 9.416284 AGTTGAGAAACAATAGTTCCCTTTAAA 57.584 29.630 0.00 0.00 40.76 1.52
90 91 9.692749 GAAACAATAGTTCCCTTTAAAAAGAGG 57.307 33.333 4.01 4.29 36.08 3.69
120 121 5.771165 GGGGAGTCAACTTACACCAAATTTA 59.229 40.000 0.00 0.00 32.29 1.40
148 149 5.124297 TCAGATGACATACAAATTGCCACAG 59.876 40.000 0.00 0.00 0.00 3.66
153 154 3.324556 ACATACAAATTGCCACAGCCTTT 59.675 39.130 0.00 0.00 38.69 3.11
190 193 3.325716 AGAACAAAGCATGCCAGGATTTT 59.674 39.130 15.66 4.14 0.00 1.82
199 202 4.093850 GCATGCCAGGATTTTGAATTTGAC 59.906 41.667 6.36 0.00 0.00 3.18
201 204 5.486735 TGCCAGGATTTTGAATTTGACAT 57.513 34.783 0.00 0.00 0.00 3.06
214 217 7.156876 TGAATTTGACATTAGTTGTGATCCC 57.843 36.000 0.00 0.00 39.18 3.85
217 220 4.860802 TGACATTAGTTGTGATCCCCAT 57.139 40.909 0.00 0.00 39.18 4.00
219 222 4.227073 TGACATTAGTTGTGATCCCCATGA 59.773 41.667 0.00 0.00 39.18 3.07
225 228 5.041191 AGTTGTGATCCCCATGAACTATC 57.959 43.478 0.00 0.00 32.07 2.08
228 231 4.219919 TGTGATCCCCATGAACTATCGTA 58.780 43.478 0.00 0.00 0.00 3.43
234 237 4.041198 TCCCCATGAACTATCGTATTTCCC 59.959 45.833 0.00 0.00 0.00 3.97
235 238 4.324267 CCCATGAACTATCGTATTTCCCC 58.676 47.826 0.00 0.00 0.00 4.81
260 263 2.827800 TCTTGTGAAGTGGAGAGCTG 57.172 50.000 0.00 0.00 0.00 4.24
268 271 0.472734 AGTGGAGAGCTGGACAAGGT 60.473 55.000 0.00 0.00 40.07 3.50
279 282 1.902508 TGGACAAGGTTGCCAACAAAA 59.097 42.857 10.18 0.00 37.58 2.44
294 297 5.350914 GCCAACAAAATAGCATTATGTTGCA 59.649 36.000 10.55 0.00 45.80 4.08
397 400 0.618968 AAACGCTCCCTCCCTGATCT 60.619 55.000 0.00 0.00 0.00 2.75
419 422 9.877178 GATCTAGAATCACCTTCAAAGAGTAAA 57.123 33.333 0.00 0.00 36.24 2.01
421 424 8.871125 TCTAGAATCACCTTCAAAGAGTAAAGT 58.129 33.333 0.00 0.00 36.24 2.66
429 432 8.713271 CACCTTCAAAGAGTAAAGTTAGATGAC 58.287 37.037 0.00 0.00 0.00 3.06
452 455 2.131183 GATGAGAATAGCACGCACTCC 58.869 52.381 0.00 0.00 0.00 3.85
453 456 1.186200 TGAGAATAGCACGCACTCCT 58.814 50.000 0.00 0.00 0.00 3.69
454 457 1.134995 TGAGAATAGCACGCACTCCTG 60.135 52.381 0.00 0.00 0.00 3.86
455 458 0.898320 AGAATAGCACGCACTCCTGT 59.102 50.000 0.00 0.00 0.00 4.00
456 459 1.134965 AGAATAGCACGCACTCCTGTC 60.135 52.381 0.00 0.00 0.00 3.51
457 460 0.108138 AATAGCACGCACTCCTGTCC 60.108 55.000 0.00 0.00 0.00 4.02
458 461 1.961180 ATAGCACGCACTCCTGTCCC 61.961 60.000 0.00 0.00 0.00 4.46
459 462 4.314440 GCACGCACTCCTGTCCCA 62.314 66.667 0.00 0.00 0.00 4.37
460 463 2.357517 CACGCACTCCTGTCCCAC 60.358 66.667 0.00 0.00 0.00 4.61
461 464 2.524394 ACGCACTCCTGTCCCACT 60.524 61.111 0.00 0.00 0.00 4.00
462 465 2.262915 CGCACTCCTGTCCCACTC 59.737 66.667 0.00 0.00 0.00 3.51
463 466 2.279069 CGCACTCCTGTCCCACTCT 61.279 63.158 0.00 0.00 0.00 3.24
464 467 1.594310 GCACTCCTGTCCCACTCTC 59.406 63.158 0.00 0.00 0.00 3.20
465 468 0.902516 GCACTCCTGTCCCACTCTCT 60.903 60.000 0.00 0.00 0.00 3.10
466 469 1.181786 CACTCCTGTCCCACTCTCTC 58.818 60.000 0.00 0.00 0.00 3.20
467 470 0.322997 ACTCCTGTCCCACTCTCTCG 60.323 60.000 0.00 0.00 0.00 4.04
468 471 0.034960 CTCCTGTCCCACTCTCTCGA 60.035 60.000 0.00 0.00 0.00 4.04
469 472 0.626382 TCCTGTCCCACTCTCTCGAT 59.374 55.000 0.00 0.00 0.00 3.59
470 473 0.743688 CCTGTCCCACTCTCTCGATG 59.256 60.000 0.00 0.00 0.00 3.84
471 474 1.468985 CTGTCCCACTCTCTCGATGT 58.531 55.000 0.00 0.00 0.00 3.06
472 475 2.644676 CTGTCCCACTCTCTCGATGTA 58.355 52.381 0.00 0.00 0.00 2.29
473 476 3.218453 CTGTCCCACTCTCTCGATGTAT 58.782 50.000 0.00 0.00 0.00 2.29
474 477 2.952310 TGTCCCACTCTCTCGATGTATG 59.048 50.000 0.00 0.00 0.00 2.39
475 478 2.952978 GTCCCACTCTCTCGATGTATGT 59.047 50.000 0.00 0.00 0.00 2.29
476 479 3.381908 GTCCCACTCTCTCGATGTATGTT 59.618 47.826 0.00 0.00 0.00 2.71
477 480 4.023980 TCCCACTCTCTCGATGTATGTTT 58.976 43.478 0.00 0.00 0.00 2.83
478 481 4.466370 TCCCACTCTCTCGATGTATGTTTT 59.534 41.667 0.00 0.00 0.00 2.43
479 482 4.568359 CCCACTCTCTCGATGTATGTTTTG 59.432 45.833 0.00 0.00 0.00 2.44
480 483 5.410924 CCACTCTCTCGATGTATGTTTTGA 58.589 41.667 0.00 0.00 0.00 2.69
481 484 5.869344 CCACTCTCTCGATGTATGTTTTGAA 59.131 40.000 0.00 0.00 0.00 2.69
482 485 6.536582 CCACTCTCTCGATGTATGTTTTGAAT 59.463 38.462 0.00 0.00 0.00 2.57
483 486 7.065085 CCACTCTCTCGATGTATGTTTTGAATT 59.935 37.037 0.00 0.00 0.00 2.17
484 487 8.446273 CACTCTCTCGATGTATGTTTTGAATTT 58.554 33.333 0.00 0.00 0.00 1.82
485 488 9.003658 ACTCTCTCGATGTATGTTTTGAATTTT 57.996 29.630 0.00 0.00 0.00 1.82
486 489 9.270576 CTCTCTCGATGTATGTTTTGAATTTTG 57.729 33.333 0.00 0.00 0.00 2.44
487 490 8.998377 TCTCTCGATGTATGTTTTGAATTTTGA 58.002 29.630 0.00 0.00 0.00 2.69
488 491 9.611284 CTCTCGATGTATGTTTTGAATTTTGAA 57.389 29.630 0.00 0.00 0.00 2.69
489 492 9.958234 TCTCGATGTATGTTTTGAATTTTGAAA 57.042 25.926 0.00 0.00 0.00 2.69
492 495 9.288845 CGATGTATGTTTTGAATTTTGAAAACG 57.711 29.630 11.60 0.00 43.90 3.60
511 514 9.716507 TGAAAACGAAAAAGAGAAACTTAGATG 57.283 29.630 0.00 0.00 37.93 2.90
512 515 9.717892 GAAAACGAAAAAGAGAAACTTAGATGT 57.282 29.630 0.00 0.00 37.93 3.06
513 516 9.503427 AAAACGAAAAAGAGAAACTTAGATGTG 57.497 29.630 0.00 0.00 37.93 3.21
514 517 8.433421 AACGAAAAAGAGAAACTTAGATGTGA 57.567 30.769 0.00 0.00 37.93 3.58
515 518 8.433421 ACGAAAAAGAGAAACTTAGATGTGAA 57.567 30.769 0.00 0.00 37.93 3.18
516 519 9.057089 ACGAAAAAGAGAAACTTAGATGTGAAT 57.943 29.630 0.00 0.00 37.93 2.57
521 524 9.660180 AAAGAGAAACTTAGATGTGAATAGTCC 57.340 33.333 0.00 0.00 37.93 3.85
522 525 8.367660 AGAGAAACTTAGATGTGAATAGTCCA 57.632 34.615 0.00 0.00 0.00 4.02
523 526 8.254508 AGAGAAACTTAGATGTGAATAGTCCAC 58.745 37.037 0.00 0.00 35.23 4.02
524 527 7.907389 AGAAACTTAGATGTGAATAGTCCACA 58.093 34.615 0.00 0.00 46.90 4.17
525 528 8.037758 AGAAACTTAGATGTGAATAGTCCACAG 58.962 37.037 0.00 0.00 46.19 3.66
526 529 6.227298 ACTTAGATGTGAATAGTCCACAGG 57.773 41.667 0.00 0.00 46.19 4.00
527 530 5.721960 ACTTAGATGTGAATAGTCCACAGGT 59.278 40.000 0.00 0.00 46.19 4.00
528 531 4.478206 AGATGTGAATAGTCCACAGGTG 57.522 45.455 0.00 0.00 46.19 4.00
529 532 3.840666 AGATGTGAATAGTCCACAGGTGT 59.159 43.478 0.00 0.00 46.19 4.16
530 533 3.678056 TGTGAATAGTCCACAGGTGTC 57.322 47.619 0.00 0.00 39.36 3.67
531 534 2.029380 TGTGAATAGTCCACAGGTGTCG 60.029 50.000 0.00 0.00 39.36 4.35
532 535 2.230508 GTGAATAGTCCACAGGTGTCGA 59.769 50.000 0.00 0.00 34.81 4.20
533 536 2.492088 TGAATAGTCCACAGGTGTCGAG 59.508 50.000 0.00 0.00 0.00 4.04
534 537 2.217510 ATAGTCCACAGGTGTCGAGT 57.782 50.000 0.00 0.00 0.00 4.18
535 538 1.991121 TAGTCCACAGGTGTCGAGTT 58.009 50.000 0.00 0.00 0.00 3.01
536 539 1.120530 AGTCCACAGGTGTCGAGTTT 58.879 50.000 0.00 0.00 0.00 2.66
537 540 1.068741 AGTCCACAGGTGTCGAGTTTC 59.931 52.381 0.00 0.00 0.00 2.78
538 541 1.068741 GTCCACAGGTGTCGAGTTTCT 59.931 52.381 0.00 0.00 0.00 2.52
539 542 1.340248 TCCACAGGTGTCGAGTTTCTC 59.660 52.381 0.00 0.00 0.00 2.87
540 543 1.341531 CCACAGGTGTCGAGTTTCTCT 59.658 52.381 0.00 0.00 0.00 3.10
541 544 2.224066 CCACAGGTGTCGAGTTTCTCTT 60.224 50.000 0.00 0.00 0.00 2.85
542 545 3.458189 CACAGGTGTCGAGTTTCTCTTT 58.542 45.455 0.00 0.00 0.00 2.52
543 546 3.871594 CACAGGTGTCGAGTTTCTCTTTT 59.128 43.478 0.00 0.00 0.00 2.27
544 547 4.332819 CACAGGTGTCGAGTTTCTCTTTTT 59.667 41.667 0.00 0.00 0.00 1.94
565 568 7.830217 TTTTTGTTTCTCGATGTATGTTTCG 57.170 32.000 0.00 0.00 36.72 3.46
566 569 6.772770 TTTGTTTCTCGATGTATGTTTCGA 57.227 33.333 0.00 0.00 41.70 3.71
567 570 6.772770 TTGTTTCTCGATGTATGTTTCGAA 57.227 33.333 0.00 0.00 43.14 3.71
568 571 6.961359 TGTTTCTCGATGTATGTTTCGAAT 57.039 33.333 0.00 0.00 43.14 3.34
569 572 7.359262 TGTTTCTCGATGTATGTTTCGAATT 57.641 32.000 0.00 0.00 43.14 2.17
570 573 7.802738 TGTTTCTCGATGTATGTTTCGAATTT 58.197 30.769 0.00 0.00 43.14 1.82
571 574 8.286800 TGTTTCTCGATGTATGTTTCGAATTTT 58.713 29.630 0.00 0.00 43.14 1.82
572 575 8.567221 GTTTCTCGATGTATGTTTCGAATTTTG 58.433 33.333 0.00 0.00 43.14 2.44
573 576 7.589574 TCTCGATGTATGTTTCGAATTTTGA 57.410 32.000 0.00 0.00 43.14 2.69
574 577 8.196802 TCTCGATGTATGTTTCGAATTTTGAT 57.803 30.769 0.00 0.00 43.14 2.57
575 578 8.328146 TCTCGATGTATGTTTCGAATTTTGATC 58.672 33.333 0.00 0.00 43.14 2.92
576 579 8.196802 TCGATGTATGTTTCGAATTTTGATCT 57.803 30.769 0.00 0.00 41.06 2.75
577 580 8.116136 TCGATGTATGTTTCGAATTTTGATCTG 58.884 33.333 0.00 0.00 41.06 2.90
578 581 8.116136 CGATGTATGTTTCGAATTTTGATCTGA 58.884 33.333 0.00 0.00 37.55 3.27
579 582 9.773328 GATGTATGTTTCGAATTTTGATCTGAA 57.227 29.630 0.00 0.00 0.00 3.02
609 612 9.914834 TTTAAGGGTTATCTTAATATGTGCTGT 57.085 29.630 0.00 0.00 38.52 4.40
610 613 7.807977 AAGGGTTATCTTAATATGTGCTGTG 57.192 36.000 0.00 0.00 0.00 3.66
611 614 7.136822 AGGGTTATCTTAATATGTGCTGTGA 57.863 36.000 0.00 0.00 0.00 3.58
612 615 7.573710 AGGGTTATCTTAATATGTGCTGTGAA 58.426 34.615 0.00 0.00 0.00 3.18
613 616 7.716998 AGGGTTATCTTAATATGTGCTGTGAAG 59.283 37.037 0.00 0.00 0.00 3.02
614 617 7.715249 GGGTTATCTTAATATGTGCTGTGAAGA 59.285 37.037 0.00 0.00 0.00 2.87
615 618 9.277783 GGTTATCTTAATATGTGCTGTGAAGAT 57.722 33.333 0.00 0.00 36.44 2.40
617 620 6.609237 TCTTAATATGTGCTGTGAAGATGC 57.391 37.500 0.00 0.00 0.00 3.91
618 621 6.114767 TCTTAATATGTGCTGTGAAGATGCA 58.885 36.000 0.00 0.00 0.00 3.96
619 622 4.895224 AATATGTGCTGTGAAGATGCAG 57.105 40.909 0.00 0.00 37.39 4.41
620 623 1.460504 ATGTGCTGTGAAGATGCAGG 58.539 50.000 0.00 0.00 37.39 4.85
621 624 0.397564 TGTGCTGTGAAGATGCAGGA 59.602 50.000 0.00 0.00 37.39 3.86
622 625 1.003928 TGTGCTGTGAAGATGCAGGAT 59.996 47.619 0.00 0.00 37.39 3.24
623 626 2.089980 GTGCTGTGAAGATGCAGGATT 58.910 47.619 0.00 0.00 37.39 3.01
624 627 2.097142 GTGCTGTGAAGATGCAGGATTC 59.903 50.000 0.00 0.00 37.39 2.52
625 628 2.026542 TGCTGTGAAGATGCAGGATTCT 60.027 45.455 9.06 0.00 33.62 2.40
626 629 3.015327 GCTGTGAAGATGCAGGATTCTT 58.985 45.455 0.00 0.00 34.95 2.52
627 630 3.442977 GCTGTGAAGATGCAGGATTCTTT 59.557 43.478 1.99 0.00 32.46 2.52
628 631 4.082354 GCTGTGAAGATGCAGGATTCTTTT 60.082 41.667 1.99 0.00 32.46 2.27
629 632 5.566230 GCTGTGAAGATGCAGGATTCTTTTT 60.566 40.000 1.99 0.00 32.46 1.94
630 633 6.017400 TGTGAAGATGCAGGATTCTTTTTC 57.983 37.500 1.99 0.00 32.46 2.29
631 634 5.535783 TGTGAAGATGCAGGATTCTTTTTCA 59.464 36.000 1.99 0.00 32.46 2.69
632 635 6.040729 TGTGAAGATGCAGGATTCTTTTTCAA 59.959 34.615 1.99 0.00 32.46 2.69
633 636 6.925165 GTGAAGATGCAGGATTCTTTTTCAAA 59.075 34.615 1.99 0.00 32.46 2.69
634 637 7.439056 GTGAAGATGCAGGATTCTTTTTCAAAA 59.561 33.333 1.99 0.00 32.46 2.44
635 638 7.986320 TGAAGATGCAGGATTCTTTTTCAAAAA 59.014 29.630 1.99 0.00 32.46 1.94
665 668 8.713271 TCACAATGTTTAAATTTAAATTCCGGC 58.287 29.630 22.66 11.62 35.35 6.13
666 669 7.960195 CACAATGTTTAAATTTAAATTCCGGCC 59.040 33.333 22.66 11.03 35.35 6.13
667 670 6.895607 ATGTTTAAATTTAAATTCCGGCCG 57.104 33.333 22.66 21.04 35.35 6.13
668 671 4.626172 TGTTTAAATTTAAATTCCGGCCGC 59.374 37.500 22.85 9.86 35.35 6.53
669 672 4.451629 TTAAATTTAAATTCCGGCCGCA 57.548 36.364 22.85 0.00 0.00 5.69
670 673 3.320673 AAATTTAAATTCCGGCCGCAA 57.679 38.095 22.85 13.59 0.00 4.85
671 674 2.577449 ATTTAAATTCCGGCCGCAAG 57.423 45.000 22.85 6.58 0.00 4.01
672 675 1.249407 TTTAAATTCCGGCCGCAAGT 58.751 45.000 22.85 8.21 0.00 3.16
673 676 0.806241 TTAAATTCCGGCCGCAAGTC 59.194 50.000 22.85 0.00 0.00 3.01
674 677 0.321741 TAAATTCCGGCCGCAAGTCA 60.322 50.000 22.85 0.00 0.00 3.41
675 678 1.862602 AAATTCCGGCCGCAAGTCAC 61.863 55.000 22.85 0.00 0.00 3.67
676 679 3.545124 ATTCCGGCCGCAAGTCACA 62.545 57.895 22.85 0.00 0.00 3.58
677 680 4.980805 TCCGGCCGCAAGTCACAC 62.981 66.667 22.85 0.00 0.00 3.82
682 685 4.347096 CCGCAAGTCACACGGTAA 57.653 55.556 0.00 0.00 42.01 2.85
683 686 1.857364 CCGCAAGTCACACGGTAAC 59.143 57.895 0.00 0.00 42.01 2.50
684 687 0.876777 CCGCAAGTCACACGGTAACA 60.877 55.000 0.00 0.00 42.01 2.41
685 688 1.144969 CGCAAGTCACACGGTAACAT 58.855 50.000 0.00 0.00 0.00 2.71
686 689 1.136363 CGCAAGTCACACGGTAACATG 60.136 52.381 0.00 0.00 0.00 3.21
687 690 1.399727 GCAAGTCACACGGTAACATGC 60.400 52.381 0.00 3.20 31.57 4.06
688 691 1.870402 CAAGTCACACGGTAACATGCA 59.130 47.619 0.00 0.00 0.00 3.96
689 692 2.248280 AGTCACACGGTAACATGCAA 57.752 45.000 0.00 0.00 0.00 4.08
690 693 2.566913 AGTCACACGGTAACATGCAAA 58.433 42.857 0.00 0.00 0.00 3.68
691 694 2.289547 AGTCACACGGTAACATGCAAAC 59.710 45.455 0.00 0.00 0.00 2.93
692 695 1.261885 TCACACGGTAACATGCAAACG 59.738 47.619 3.95 3.95 0.00 3.60
693 696 1.003331 CACACGGTAACATGCAAACGT 60.003 47.619 5.23 5.23 34.61 3.99
694 697 1.669184 CACGGTAACATGCAAACGTG 58.331 50.000 19.94 19.94 44.20 4.49
705 708 3.460114 CAAACGTGCATGTCACCTG 57.540 52.632 12.96 4.18 42.69 4.00
706 709 0.943673 CAAACGTGCATGTCACCTGA 59.056 50.000 12.96 0.00 42.69 3.86
707 710 1.536766 CAAACGTGCATGTCACCTGAT 59.463 47.619 12.96 0.00 42.69 2.90
708 711 1.442769 AACGTGCATGTCACCTGATC 58.557 50.000 12.96 0.00 42.69 2.92
709 712 0.610174 ACGTGCATGTCACCTGATCT 59.390 50.000 5.51 0.00 42.69 2.75
710 713 1.004595 CGTGCATGTCACCTGATCTG 58.995 55.000 12.62 0.00 42.69 2.90
711 714 1.673923 CGTGCATGTCACCTGATCTGT 60.674 52.381 12.62 0.00 42.69 3.41
712 715 1.736126 GTGCATGTCACCTGATCTGTG 59.264 52.381 9.00 9.00 39.79 3.66
713 716 1.348696 TGCATGTCACCTGATCTGTGT 59.651 47.619 13.35 2.86 35.25 3.72
714 717 2.005451 GCATGTCACCTGATCTGTGTC 58.995 52.381 13.35 9.78 35.25 3.67
729 732 2.750237 GTCCCGTTGGCACCATCC 60.750 66.667 0.00 0.00 0.00 3.51
732 735 2.751436 CCGTTGGCACCATCCTGG 60.751 66.667 0.00 0.00 45.02 4.45
746 749 0.675837 TCCTGGTCGTAGGACTCACG 60.676 60.000 14.75 6.23 41.85 4.35
788 793 0.109272 CTCTCGAGCCAACGTGCTAA 60.109 55.000 7.81 0.00 42.95 3.09
864 875 3.049912 CGCCCAACTTTAAGAACAAAGC 58.950 45.455 0.00 0.00 38.79 3.51
870 881 4.918810 ACTTTAAGAACAAAGCCAGGTG 57.081 40.909 0.00 0.00 38.79 4.00
878 894 2.962859 ACAAAGCCAGGTGATTTCCTT 58.037 42.857 0.00 0.00 35.37 3.36
899 915 4.273148 TGGGCAGTCTACTTCTTTTCTC 57.727 45.455 0.00 0.00 0.00 2.87
901 917 3.254892 GGCAGTCTACTTCTTTTCTCCG 58.745 50.000 0.00 0.00 0.00 4.63
909 925 3.821748 ACTTCTTTTCTCCGCCTTTTCT 58.178 40.909 0.00 0.00 0.00 2.52
910 926 4.969484 ACTTCTTTTCTCCGCCTTTTCTA 58.031 39.130 0.00 0.00 0.00 2.10
911 927 5.561679 ACTTCTTTTCTCCGCCTTTTCTAT 58.438 37.500 0.00 0.00 0.00 1.98
1038 1063 1.688735 GGATTGCCCTTCCATTTAGCC 59.311 52.381 0.00 0.00 33.21 3.93
1051 1076 5.431765 TCCATTTAGCCTTTCAGATGACTC 58.568 41.667 0.00 0.00 0.00 3.36
1068 1094 0.526524 CTCGGCACTTCATCTCGTCC 60.527 60.000 0.00 0.00 0.00 4.79
1090 1116 4.592192 CGGCCAGTGCGATCGGAT 62.592 66.667 18.30 1.35 38.85 4.18
1097 1123 0.179100 AGTGCGATCGGATGGTTCAG 60.179 55.000 18.30 0.00 0.00 3.02
1103 1129 2.418746 CGATCGGATGGTTCAGGTTTCT 60.419 50.000 7.38 0.00 0.00 2.52
1110 1136 1.202722 TGGTTCAGGTTTCTCCGTTCC 60.203 52.381 0.00 0.00 41.99 3.62
1130 1156 4.087892 ATCCAACGGCTGAGCGCT 62.088 61.111 11.27 11.27 39.13 5.92
1135 1161 3.941657 AACGGCTGAGCGCTCTTCC 62.942 63.158 35.27 30.83 39.13 3.46
1184 1210 2.202623 GTCGAACGCGCCTCTCAT 60.203 61.111 5.73 0.00 37.46 2.90
1295 1330 3.721706 CTGGCCACCACCTCCTCC 61.722 72.222 0.00 0.00 0.00 4.30
1296 1331 4.270153 TGGCCACCACCTCCTCCT 62.270 66.667 0.00 0.00 0.00 3.69
1297 1332 3.721706 GGCCACCACCTCCTCCTG 61.722 72.222 0.00 0.00 0.00 3.86
2256 2376 3.628646 AAGTCCCGCACTGATGGGC 62.629 63.158 2.52 0.00 45.60 5.36
2314 2443 6.577103 TGTAGCTACTCCATTCAAATGAGAG 58.423 40.000 23.84 14.46 38.70 3.20
2361 2490 1.312815 ACTGCCTGTTTCACTGAAGC 58.687 50.000 0.00 0.00 0.00 3.86
2412 2549 6.417258 ACATGATCATGAACATAACAGGTGA 58.583 36.000 36.37 0.00 41.20 4.02
2413 2550 6.885918 ACATGATCATGAACATAACAGGTGAA 59.114 34.615 36.37 0.00 41.20 3.18
2414 2551 7.558807 ACATGATCATGAACATAACAGGTGAAT 59.441 33.333 36.37 9.76 41.20 2.57
2415 2552 9.059260 CATGATCATGAACATAACAGGTGAATA 57.941 33.333 28.37 0.00 41.20 1.75
2416 2553 8.437360 TGATCATGAACATAACAGGTGAATAC 57.563 34.615 0.00 0.00 0.00 1.89
2417 2554 8.046107 TGATCATGAACATAACAGGTGAATACA 58.954 33.333 0.00 0.00 0.00 2.29
2418 2555 8.985315 ATCATGAACATAACAGGTGAATACAT 57.015 30.769 0.00 0.00 0.00 2.29
2419 2556 8.806429 TCATGAACATAACAGGTGAATACATT 57.194 30.769 0.00 0.00 0.00 2.71
2420 2557 8.676401 TCATGAACATAACAGGTGAATACATTG 58.324 33.333 0.00 0.00 0.00 2.82
2421 2558 8.676401 CATGAACATAACAGGTGAATACATTGA 58.324 33.333 0.00 0.00 0.00 2.57
2422 2559 8.806429 TGAACATAACAGGTGAATACATTGAT 57.194 30.769 0.00 0.00 0.00 2.57
2423 2560 8.676401 TGAACATAACAGGTGAATACATTGATG 58.324 33.333 0.00 0.00 0.00 3.07
2424 2561 8.579850 AACATAACAGGTGAATACATTGATGT 57.420 30.769 1.84 1.84 44.48 3.06
2425 2562 7.988737 ACATAACAGGTGAATACATTGATGTG 58.011 34.615 6.87 0.00 41.89 3.21
2570 2738 4.639078 TGGATCCTTCTGTGTTGAATGA 57.361 40.909 14.23 0.00 0.00 2.57
2658 2920 6.997655 TGAATGATGAGGTGGTGTAGATATC 58.002 40.000 0.00 0.00 0.00 1.63
2721 2984 7.275779 ACTGCTGACTGTTCTTATGTAAATACG 59.724 37.037 0.00 0.00 0.00 3.06
2736 2999 7.354025 TGTAAATACGTCAATAACAGTGGTG 57.646 36.000 0.00 0.00 0.00 4.17
2925 3746 3.770263 AAATGGACACATGATGCTTCG 57.230 42.857 0.00 0.00 37.40 3.79
2935 3756 4.385146 CACATGATGCTTCGCTAGACATAG 59.615 45.833 0.00 0.00 0.00 2.23
2944 3765 1.064208 CGCTAGACATAGACTGTGCGT 59.936 52.381 0.00 0.00 38.54 5.24
3015 3836 1.251251 GGGAAGAAACTGTGCATGCT 58.749 50.000 20.33 0.00 0.00 3.79
3068 3889 3.136763 ACTGCTTGAGTGTGATCAACAG 58.863 45.455 0.00 12.95 40.26 3.16
3217 4039 2.551459 CAGACTGCAGGAAAAGGAACTG 59.449 50.000 19.93 8.73 40.86 3.16
3286 4108 3.440228 GCGAGGACTCTCTATGTTCAAC 58.560 50.000 0.00 0.00 37.86 3.18
3339 4161 1.811266 CAACCTCAGATGGCGTCGG 60.811 63.158 0.13 0.03 0.00 4.79
3478 4301 1.596477 GCGGCATGGGTCAGATCTC 60.596 63.158 0.00 0.00 0.00 2.75
3520 4343 2.059541 GGAATTACTATCACCGCGCTC 58.940 52.381 5.56 0.00 0.00 5.03
3556 4379 0.609957 CATGCTTTCTGCCAGGGTCA 60.610 55.000 0.00 0.00 42.00 4.02
3827 4659 0.327591 CAGAGCCCTGCTTCCTTCTT 59.672 55.000 0.00 0.00 39.88 2.52
4014 4963 1.374631 GGCGACAGACTGCACATCA 60.375 57.895 1.25 0.00 0.00 3.07
4093 5042 9.162764 TGGTTCAGTAGCAAAAATCTAGATAAC 57.837 33.333 5.46 2.16 0.00 1.89
4150 5099 3.320826 GGTTTGACTTAGGCACCAACATT 59.679 43.478 5.18 0.00 0.00 2.71
4201 5150 2.317609 CGCTGTACCGCTGCTTGTT 61.318 57.895 7.70 0.00 39.51 2.83
4202 5151 1.497722 GCTGTACCGCTGCTTGTTC 59.502 57.895 1.52 0.00 38.75 3.18
4203 5152 1.227999 GCTGTACCGCTGCTTGTTCA 61.228 55.000 1.52 0.00 38.75 3.18
4204 5153 1.225855 CTGTACCGCTGCTTGTTCAA 58.774 50.000 0.00 0.00 0.00 2.69
4205 5154 1.195448 CTGTACCGCTGCTTGTTCAAG 59.805 52.381 8.04 8.04 0.00 3.02
4206 5155 1.202592 TGTACCGCTGCTTGTTCAAGA 60.203 47.619 15.52 1.78 0.00 3.02
4207 5156 1.871039 GTACCGCTGCTTGTTCAAGAA 59.129 47.619 15.52 5.00 0.00 2.52
4262 5211 8.220755 TCAAATATATACTTGTTCCTTGGCAC 57.779 34.615 4.01 0.00 0.00 5.01
4274 5223 2.162681 CCTTGGCACGGAAGAATCTTT 58.837 47.619 3.47 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.192044 CCCTATACTTTTAGCCCCTCAAAAA 58.808 40.000 0.00 0.00 0.00 1.94
26 27 5.340528 CCCCTATACTTTTAGCCCCTCAAAA 60.341 44.000 0.00 0.00 0.00 2.44
27 28 4.167307 CCCCTATACTTTTAGCCCCTCAAA 59.833 45.833 0.00 0.00 0.00 2.69
28 29 3.720002 CCCCTATACTTTTAGCCCCTCAA 59.280 47.826 0.00 0.00 0.00 3.02
29 30 3.050876 TCCCCTATACTTTTAGCCCCTCA 60.051 47.826 0.00 0.00 0.00 3.86
30 31 3.595021 TCCCCTATACTTTTAGCCCCTC 58.405 50.000 0.00 0.00 0.00 4.30
31 32 3.738112 TCCCCTATACTTTTAGCCCCT 57.262 47.619 0.00 0.00 0.00 4.79
32 33 5.077564 CAAATCCCCTATACTTTTAGCCCC 58.922 45.833 0.00 0.00 0.00 5.80
33 34 4.523173 GCAAATCCCCTATACTTTTAGCCC 59.477 45.833 0.00 0.00 0.00 5.19
34 35 5.386060 AGCAAATCCCCTATACTTTTAGCC 58.614 41.667 0.00 0.00 0.00 3.93
35 36 7.225011 ACTAGCAAATCCCCTATACTTTTAGC 58.775 38.462 0.00 0.00 0.00 3.09
36 37 9.057089 CAACTAGCAAATCCCCTATACTTTTAG 57.943 37.037 0.00 0.00 0.00 1.85
37 38 8.774183 TCAACTAGCAAATCCCCTATACTTTTA 58.226 33.333 0.00 0.00 0.00 1.52
38 39 7.639378 TCAACTAGCAAATCCCCTATACTTTT 58.361 34.615 0.00 0.00 0.00 2.27
39 40 7.127339 TCTCAACTAGCAAATCCCCTATACTTT 59.873 37.037 0.00 0.00 0.00 2.66
40 41 6.615726 TCTCAACTAGCAAATCCCCTATACTT 59.384 38.462 0.00 0.00 0.00 2.24
41 42 6.143915 TCTCAACTAGCAAATCCCCTATACT 58.856 40.000 0.00 0.00 0.00 2.12
42 43 6.420913 TCTCAACTAGCAAATCCCCTATAC 57.579 41.667 0.00 0.00 0.00 1.47
43 44 7.092623 TGTTTCTCAACTAGCAAATCCCCTATA 60.093 37.037 0.00 0.00 33.58 1.31
44 45 5.975988 TTCTCAACTAGCAAATCCCCTAT 57.024 39.130 0.00 0.00 0.00 2.57
45 46 5.013704 TGTTTCTCAACTAGCAAATCCCCTA 59.986 40.000 0.00 0.00 33.58 3.53
46 47 4.202567 TGTTTCTCAACTAGCAAATCCCCT 60.203 41.667 0.00 0.00 33.58 4.79
47 48 4.079253 TGTTTCTCAACTAGCAAATCCCC 58.921 43.478 0.00 0.00 33.58 4.81
48 49 5.705609 TTGTTTCTCAACTAGCAAATCCC 57.294 39.130 0.00 0.00 33.58 3.85
49 50 8.045176 ACTATTGTTTCTCAACTAGCAAATCC 57.955 34.615 0.00 0.00 38.97 3.01
50 51 9.548208 GAACTATTGTTTCTCAACTAGCAAATC 57.452 33.333 0.00 0.00 38.97 2.17
51 52 8.515414 GGAACTATTGTTTCTCAACTAGCAAAT 58.485 33.333 0.00 0.00 38.97 2.32
52 53 7.040686 GGGAACTATTGTTTCTCAACTAGCAAA 60.041 37.037 0.00 0.00 38.97 3.68
53 54 6.430000 GGGAACTATTGTTTCTCAACTAGCAA 59.570 38.462 0.00 0.00 38.97 3.91
54 55 5.938125 GGGAACTATTGTTTCTCAACTAGCA 59.062 40.000 0.00 0.00 38.97 3.49
55 56 6.174049 AGGGAACTATTGTTTCTCAACTAGC 58.826 40.000 0.00 0.00 40.61 3.42
56 57 8.622948 AAAGGGAACTATTGTTTCTCAACTAG 57.377 34.615 0.00 0.00 42.68 2.57
58 59 8.990163 TTAAAGGGAACTATTGTTTCTCAACT 57.010 30.769 0.00 0.00 42.68 3.16
64 65 9.692749 CCTCTTTTTAAAGGGAACTATTGTTTC 57.307 33.333 3.67 0.00 42.68 2.78
91 92 2.295602 TAAGTTGACTCCCCGCCCC 61.296 63.158 0.00 0.00 0.00 5.80
92 93 1.078637 GTAAGTTGACTCCCCGCCC 60.079 63.158 0.00 0.00 0.00 6.13
93 94 0.672711 GTGTAAGTTGACTCCCCGCC 60.673 60.000 0.00 0.00 0.00 6.13
94 95 0.672711 GGTGTAAGTTGACTCCCCGC 60.673 60.000 0.00 0.00 0.00 6.13
95 96 0.682852 TGGTGTAAGTTGACTCCCCG 59.317 55.000 0.00 0.00 32.95 5.73
96 97 2.943036 TTGGTGTAAGTTGACTCCCC 57.057 50.000 0.00 0.00 32.95 4.81
97 98 5.784578 AAATTTGGTGTAAGTTGACTCCC 57.215 39.130 0.00 0.00 32.95 4.30
98 99 9.758651 AAAATAAATTTGGTGTAAGTTGACTCC 57.241 29.630 0.00 0.00 34.24 3.85
120 121 7.546667 GTGGCAATTTGTATGTCATCTGAAAAT 59.453 33.333 0.00 0.00 34.49 1.82
125 126 5.313520 TGTGGCAATTTGTATGTCATCTG 57.686 39.130 0.00 0.00 34.49 2.90
129 130 2.230992 GGCTGTGGCAATTTGTATGTCA 59.769 45.455 0.00 0.00 40.87 3.58
153 154 6.151985 TGCTTTGTTCTAGTTCTGGTGAAAAA 59.848 34.615 0.00 0.00 33.52 1.94
157 158 4.415881 TGCTTTGTTCTAGTTCTGGTGA 57.584 40.909 0.00 0.00 0.00 4.02
159 160 3.503748 GCATGCTTTGTTCTAGTTCTGGT 59.496 43.478 11.37 0.00 0.00 4.00
161 162 3.503363 TGGCATGCTTTGTTCTAGTTCTG 59.497 43.478 18.92 0.00 0.00 3.02
162 163 3.754965 TGGCATGCTTTGTTCTAGTTCT 58.245 40.909 18.92 0.00 0.00 3.01
190 193 6.152661 GGGGATCACAACTAATGTCAAATTCA 59.847 38.462 0.00 0.00 41.46 2.57
199 202 5.195940 AGTTCATGGGGATCACAACTAATG 58.804 41.667 0.00 0.00 32.82 1.90
201 204 4.927267 AGTTCATGGGGATCACAACTAA 57.073 40.909 0.00 0.00 32.82 2.24
225 228 2.210116 CAAGATCACCGGGGAAATACG 58.790 52.381 12.35 0.00 0.00 3.06
228 231 1.633432 TCACAAGATCACCGGGGAAAT 59.367 47.619 12.35 0.00 0.00 2.17
234 237 1.001974 TCCACTTCACAAGATCACCGG 59.998 52.381 0.00 0.00 0.00 5.28
235 238 2.029020 TCTCCACTTCACAAGATCACCG 60.029 50.000 0.00 0.00 0.00 4.94
260 263 2.682155 TTTTGTTGGCAACCTTGTCC 57.318 45.000 26.31 1.22 33.82 4.02
268 271 6.128336 GCAACATAATGCTATTTTGTTGGCAA 60.128 34.615 26.26 0.00 44.48 4.52
279 282 8.694540 TCATAAAGGTTTGCAACATAATGCTAT 58.305 29.630 0.00 0.00 46.54 2.97
294 297 5.478332 CCTTTTGAGGAGCTCATAAAGGTTT 59.522 40.000 24.85 0.00 43.52 3.27
323 326 1.757682 TTTCTTGCGAGTTTGTGGGT 58.242 45.000 0.00 0.00 0.00 4.51
419 422 5.047660 GCTATTCTCATCCGGTCATCTAACT 60.048 44.000 0.00 0.00 0.00 2.24
421 424 4.832823 TGCTATTCTCATCCGGTCATCTAA 59.167 41.667 0.00 0.00 0.00 2.10
429 432 0.249447 TGCGTGCTATTCTCATCCGG 60.249 55.000 0.00 0.00 0.00 5.14
462 465 9.611284 TTCAAAATTCAAAACATACATCGAGAG 57.389 29.630 0.00 0.00 0.00 3.20
463 466 9.958234 TTTCAAAATTCAAAACATACATCGAGA 57.042 25.926 0.00 0.00 0.00 4.04
466 469 9.288845 CGTTTTCAAAATTCAAAACATACATCG 57.711 29.630 15.33 0.00 40.90 3.84
485 488 9.716507 CATCTAAGTTTCTCTTTTTCGTTTTCA 57.283 29.630 0.00 0.00 37.56 2.69
486 489 9.717892 ACATCTAAGTTTCTCTTTTTCGTTTTC 57.282 29.630 0.00 0.00 37.56 2.29
487 490 9.503427 CACATCTAAGTTTCTCTTTTTCGTTTT 57.497 29.630 0.00 0.00 37.56 2.43
488 491 8.889717 TCACATCTAAGTTTCTCTTTTTCGTTT 58.110 29.630 0.00 0.00 37.56 3.60
489 492 8.433421 TCACATCTAAGTTTCTCTTTTTCGTT 57.567 30.769 0.00 0.00 37.56 3.85
490 493 8.433421 TTCACATCTAAGTTTCTCTTTTTCGT 57.567 30.769 0.00 0.00 37.56 3.85
495 498 9.660180 GGACTATTCACATCTAAGTTTCTCTTT 57.340 33.333 0.00 0.00 37.56 2.52
496 499 8.816894 TGGACTATTCACATCTAAGTTTCTCTT 58.183 33.333 0.00 0.00 39.89 2.85
497 500 8.254508 GTGGACTATTCACATCTAAGTTTCTCT 58.745 37.037 0.00 0.00 35.39 3.10
498 501 8.035394 TGTGGACTATTCACATCTAAGTTTCTC 58.965 37.037 0.00 0.00 39.83 2.87
499 502 7.907389 TGTGGACTATTCACATCTAAGTTTCT 58.093 34.615 0.00 0.00 39.83 2.52
500 503 7.278868 CCTGTGGACTATTCACATCTAAGTTTC 59.721 40.741 0.00 0.00 43.16 2.78
501 504 7.106239 CCTGTGGACTATTCACATCTAAGTTT 58.894 38.462 0.00 0.00 43.16 2.66
502 505 6.213600 ACCTGTGGACTATTCACATCTAAGTT 59.786 38.462 0.00 0.00 43.16 2.66
503 506 5.721960 ACCTGTGGACTATTCACATCTAAGT 59.278 40.000 0.00 0.00 43.16 2.24
504 507 6.045318 CACCTGTGGACTATTCACATCTAAG 58.955 44.000 0.00 0.00 43.16 2.18
505 508 5.483937 ACACCTGTGGACTATTCACATCTAA 59.516 40.000 1.91 0.00 43.16 2.10
506 509 5.023452 ACACCTGTGGACTATTCACATCTA 58.977 41.667 1.91 0.00 43.16 1.98
507 510 3.840666 ACACCTGTGGACTATTCACATCT 59.159 43.478 1.91 0.00 43.16 2.90
508 511 4.184629 GACACCTGTGGACTATTCACATC 58.815 47.826 1.91 0.00 43.16 3.06
509 512 3.368427 CGACACCTGTGGACTATTCACAT 60.368 47.826 1.91 0.00 43.16 3.21
510 513 2.029380 CGACACCTGTGGACTATTCACA 60.029 50.000 1.91 0.00 42.11 3.58
511 514 2.230508 TCGACACCTGTGGACTATTCAC 59.769 50.000 1.91 0.00 35.82 3.18
512 515 2.492088 CTCGACACCTGTGGACTATTCA 59.508 50.000 1.91 0.00 34.19 2.57
513 516 2.492484 ACTCGACACCTGTGGACTATTC 59.508 50.000 1.91 0.00 34.19 1.75
514 517 2.526432 ACTCGACACCTGTGGACTATT 58.474 47.619 1.91 0.00 34.19 1.73
515 518 2.217510 ACTCGACACCTGTGGACTAT 57.782 50.000 1.91 0.00 34.19 2.12
516 519 1.991121 AACTCGACACCTGTGGACTA 58.009 50.000 1.91 0.00 34.19 2.59
517 520 1.068741 GAAACTCGACACCTGTGGACT 59.931 52.381 1.91 0.00 34.19 3.85
518 521 1.068741 AGAAACTCGACACCTGTGGAC 59.931 52.381 1.91 0.00 34.19 4.02
519 522 1.340248 GAGAAACTCGACACCTGTGGA 59.660 52.381 1.91 0.00 34.19 4.02
520 523 1.341531 AGAGAAACTCGACACCTGTGG 59.658 52.381 1.91 0.00 35.36 4.17
521 524 2.802787 AGAGAAACTCGACACCTGTG 57.197 50.000 0.00 0.00 35.36 3.66
522 525 3.821421 AAAGAGAAACTCGACACCTGT 57.179 42.857 0.00 0.00 35.36 4.00
541 544 7.631822 TCGAAACATACATCGAGAAACAAAAA 58.368 30.769 0.00 0.00 42.61 1.94
542 545 7.179927 TCGAAACATACATCGAGAAACAAAA 57.820 32.000 0.00 0.00 42.61 2.44
543 546 6.772770 TCGAAACATACATCGAGAAACAAA 57.227 33.333 0.00 0.00 42.61 2.83
551 554 8.116136 CAGATCAAAATTCGAAACATACATCGA 58.884 33.333 0.00 0.00 45.48 3.59
552 555 8.116136 TCAGATCAAAATTCGAAACATACATCG 58.884 33.333 0.00 0.00 40.31 3.84
553 556 9.773328 TTCAGATCAAAATTCGAAACATACATC 57.227 29.630 0.00 0.31 0.00 3.06
583 586 9.914834 ACAGCACATATTAAGATAACCCTTAAA 57.085 29.630 0.00 0.00 40.65 1.52
584 587 9.337396 CACAGCACATATTAAGATAACCCTTAA 57.663 33.333 0.00 0.00 41.27 1.85
585 588 8.710239 TCACAGCACATATTAAGATAACCCTTA 58.290 33.333 0.00 0.00 0.00 2.69
586 589 7.573710 TCACAGCACATATTAAGATAACCCTT 58.426 34.615 0.00 0.00 0.00 3.95
587 590 7.136822 TCACAGCACATATTAAGATAACCCT 57.863 36.000 0.00 0.00 0.00 4.34
588 591 7.715249 TCTTCACAGCACATATTAAGATAACCC 59.285 37.037 0.00 0.00 0.00 4.11
589 592 8.662781 TCTTCACAGCACATATTAAGATAACC 57.337 34.615 0.00 0.00 0.00 2.85
591 594 8.777413 GCATCTTCACAGCACATATTAAGATAA 58.223 33.333 0.00 0.00 32.48 1.75
592 595 7.933033 TGCATCTTCACAGCACATATTAAGATA 59.067 33.333 0.00 0.00 32.48 1.98
593 596 6.769341 TGCATCTTCACAGCACATATTAAGAT 59.231 34.615 0.00 0.00 33.63 2.40
594 597 6.114767 TGCATCTTCACAGCACATATTAAGA 58.885 36.000 0.00 0.00 32.55 2.10
595 598 6.367686 TGCATCTTCACAGCACATATTAAG 57.632 37.500 0.00 0.00 32.55 1.85
596 599 5.297527 CCTGCATCTTCACAGCACATATTAA 59.702 40.000 0.00 0.00 34.13 1.40
597 600 4.818005 CCTGCATCTTCACAGCACATATTA 59.182 41.667 0.00 0.00 34.13 0.98
598 601 3.630769 CCTGCATCTTCACAGCACATATT 59.369 43.478 0.00 0.00 34.13 1.28
599 602 3.118149 TCCTGCATCTTCACAGCACATAT 60.118 43.478 0.00 0.00 34.13 1.78
600 603 2.236893 TCCTGCATCTTCACAGCACATA 59.763 45.455 0.00 0.00 34.13 2.29
601 604 1.003928 TCCTGCATCTTCACAGCACAT 59.996 47.619 0.00 0.00 34.13 3.21
602 605 0.397564 TCCTGCATCTTCACAGCACA 59.602 50.000 0.00 0.00 34.13 4.57
603 606 1.747709 ATCCTGCATCTTCACAGCAC 58.252 50.000 0.00 0.00 34.13 4.40
604 607 2.026542 AGAATCCTGCATCTTCACAGCA 60.027 45.455 0.00 0.00 36.72 4.41
605 608 2.641305 AGAATCCTGCATCTTCACAGC 58.359 47.619 0.00 0.00 32.37 4.40
606 609 5.640189 AAAAGAATCCTGCATCTTCACAG 57.360 39.130 0.92 0.00 34.90 3.66
607 610 5.535783 TGAAAAAGAATCCTGCATCTTCACA 59.464 36.000 0.92 0.75 34.90 3.58
608 611 6.017400 TGAAAAAGAATCCTGCATCTTCAC 57.983 37.500 0.92 0.00 34.90 3.18
609 612 6.653526 TTGAAAAAGAATCCTGCATCTTCA 57.346 33.333 0.92 0.00 34.90 3.02
610 613 7.951530 TTTTGAAAAAGAATCCTGCATCTTC 57.048 32.000 0.92 0.00 34.90 2.87
639 642 8.713271 GCCGGAATTTAAATTTAAACATTGTGA 58.287 29.630 22.35 1.90 35.65 3.58
640 643 7.960195 GGCCGGAATTTAAATTTAAACATTGTG 59.040 33.333 22.35 12.28 35.65 3.33
641 644 7.148557 CGGCCGGAATTTAAATTTAAACATTGT 60.149 33.333 22.35 6.70 35.65 2.71
642 645 7.176741 CGGCCGGAATTTAAATTTAAACATTG 58.823 34.615 22.35 13.85 35.65 2.82
643 646 6.183360 GCGGCCGGAATTTAAATTTAAACATT 60.183 34.615 29.38 15.07 35.65 2.71
644 647 5.292345 GCGGCCGGAATTTAAATTTAAACAT 59.708 36.000 29.38 15.44 35.65 2.71
645 648 4.626172 GCGGCCGGAATTTAAATTTAAACA 59.374 37.500 29.38 5.29 35.65 2.83
646 649 4.626172 TGCGGCCGGAATTTAAATTTAAAC 59.374 37.500 29.38 12.52 35.65 2.01
647 650 4.817517 TGCGGCCGGAATTTAAATTTAAA 58.182 34.783 29.38 22.20 37.08 1.52
648 651 4.451629 TGCGGCCGGAATTTAAATTTAA 57.548 36.364 29.38 6.54 0.00 1.52
649 652 4.082136 ACTTGCGGCCGGAATTTAAATTTA 60.082 37.500 32.76 6.34 0.00 1.40
650 653 3.258228 CTTGCGGCCGGAATTTAAATTT 58.742 40.909 32.76 0.00 0.00 1.82
651 654 2.232696 ACTTGCGGCCGGAATTTAAATT 59.767 40.909 32.76 13.24 0.00 1.82
652 655 1.822371 ACTTGCGGCCGGAATTTAAAT 59.178 42.857 32.76 11.14 0.00 1.40
653 656 1.200484 GACTTGCGGCCGGAATTTAAA 59.800 47.619 32.76 9.68 0.00 1.52
654 657 0.806241 GACTTGCGGCCGGAATTTAA 59.194 50.000 32.76 10.52 0.00 1.52
655 658 0.321741 TGACTTGCGGCCGGAATTTA 60.322 50.000 32.76 20.96 0.00 1.40
656 659 1.602323 TGACTTGCGGCCGGAATTT 60.602 52.632 32.76 22.08 0.00 1.82
657 660 2.033448 TGACTTGCGGCCGGAATT 59.967 55.556 32.76 27.25 0.00 2.17
658 661 2.746277 GTGACTTGCGGCCGGAAT 60.746 61.111 32.76 21.56 0.00 3.01
659 662 4.243008 TGTGACTTGCGGCCGGAA 62.243 61.111 30.75 30.75 0.00 4.30
660 663 4.980805 GTGTGACTTGCGGCCGGA 62.981 66.667 29.38 24.35 0.00 5.14
666 669 1.136363 CATGTTACCGTGTGACTTGCG 60.136 52.381 0.00 0.00 0.00 4.85
667 670 1.399727 GCATGTTACCGTGTGACTTGC 60.400 52.381 17.02 17.02 42.32 4.01
668 671 1.870402 TGCATGTTACCGTGTGACTTG 59.130 47.619 0.00 9.05 32.95 3.16
669 672 2.248280 TGCATGTTACCGTGTGACTT 57.752 45.000 0.00 0.00 0.00 3.01
670 673 2.248280 TTGCATGTTACCGTGTGACT 57.752 45.000 0.00 0.00 0.00 3.41
671 674 2.646250 GTTTGCATGTTACCGTGTGAC 58.354 47.619 0.00 0.00 0.00 3.67
672 675 1.261885 CGTTTGCATGTTACCGTGTGA 59.738 47.619 0.00 0.00 0.00 3.58
673 676 1.003331 ACGTTTGCATGTTACCGTGTG 60.003 47.619 0.00 0.00 0.00 3.82
674 677 1.003331 CACGTTTGCATGTTACCGTGT 60.003 47.619 16.54 0.00 40.37 4.49
675 678 1.669184 CACGTTTGCATGTTACCGTG 58.331 50.000 12.97 12.97 39.51 4.94
692 695 1.736126 CACAGATCAGGTGACATGCAC 59.264 52.381 10.99 10.63 46.98 4.57
693 696 1.348696 ACACAGATCAGGTGACATGCA 59.651 47.619 20.35 0.00 39.53 3.96
694 697 2.005451 GACACAGATCAGGTGACATGC 58.995 52.381 20.35 4.76 39.53 4.06
695 698 2.625737 GGACACAGATCAGGTGACATG 58.374 52.381 20.35 0.00 39.53 3.21
696 699 1.556911 GGGACACAGATCAGGTGACAT 59.443 52.381 20.35 2.54 39.53 3.06
697 700 0.976641 GGGACACAGATCAGGTGACA 59.023 55.000 20.35 0.00 39.53 3.58
698 701 0.108615 CGGGACACAGATCAGGTGAC 60.109 60.000 20.35 15.06 39.53 3.67
699 702 0.541998 ACGGGACACAGATCAGGTGA 60.542 55.000 20.35 0.00 39.53 4.02
700 703 0.321671 AACGGGACACAGATCAGGTG 59.678 55.000 13.98 13.98 41.95 4.00
701 704 0.321671 CAACGGGACACAGATCAGGT 59.678 55.000 0.00 0.00 0.00 4.00
702 705 0.391661 CCAACGGGACACAGATCAGG 60.392 60.000 0.00 0.00 35.59 3.86
703 706 1.021390 GCCAACGGGACACAGATCAG 61.021 60.000 0.00 0.00 35.59 2.90
704 707 1.003839 GCCAACGGGACACAGATCA 60.004 57.895 0.00 0.00 35.59 2.92
705 708 1.003839 TGCCAACGGGACACAGATC 60.004 57.895 0.00 0.00 35.59 2.75
706 709 1.302511 GTGCCAACGGGACACAGAT 60.303 57.895 0.00 0.00 43.66 2.90
707 710 2.110213 GTGCCAACGGGACACAGA 59.890 61.111 0.00 0.00 43.66 3.41
708 711 2.978010 GGTGCCAACGGGACACAG 60.978 66.667 7.00 0.00 46.07 3.66
709 712 3.126703 ATGGTGCCAACGGGACACA 62.127 57.895 7.00 3.10 46.07 3.72
710 713 2.282180 ATGGTGCCAACGGGACAC 60.282 61.111 7.00 2.83 46.07 3.67
711 714 2.033448 GATGGTGCCAACGGGACA 59.967 61.111 7.00 0.00 46.07 4.02
712 715 2.750237 GGATGGTGCCAACGGGAC 60.750 66.667 0.00 0.00 43.47 4.46
713 716 2.933287 AGGATGGTGCCAACGGGA 60.933 61.111 0.00 0.00 35.59 5.14
714 717 2.751436 CAGGATGGTGCCAACGGG 60.751 66.667 0.00 0.00 37.18 5.28
729 732 1.654954 CCCGTGAGTCCTACGACCAG 61.655 65.000 4.68 0.00 43.82 4.00
732 735 1.870055 TTGCCCGTGAGTCCTACGAC 61.870 60.000 4.68 0.00 43.82 4.34
788 793 4.463891 CACTTGGGATTTTGCCTTCACTAT 59.536 41.667 0.00 0.00 0.00 2.12
864 875 0.251742 TGCCCAAGGAAATCACCTGG 60.252 55.000 0.00 0.00 40.49 4.45
870 881 3.636153 AGTAGACTGCCCAAGGAAATC 57.364 47.619 0.00 0.00 0.00 2.17
878 894 3.008049 GGAGAAAAGAAGTAGACTGCCCA 59.992 47.826 0.00 0.00 0.00 5.36
899 915 3.120786 CGCGGTAATAATAGAAAAGGCGG 60.121 47.826 0.00 0.00 36.62 6.13
901 917 4.748600 ACTCGCGGTAATAATAGAAAAGGC 59.251 41.667 6.13 0.00 0.00 4.35
909 925 5.417811 TGGTCAAAACTCGCGGTAATAATA 58.582 37.500 6.13 0.00 0.00 0.98
910 926 4.255301 TGGTCAAAACTCGCGGTAATAAT 58.745 39.130 6.13 0.00 0.00 1.28
911 927 3.661944 TGGTCAAAACTCGCGGTAATAA 58.338 40.909 6.13 0.00 0.00 1.40
1038 1063 2.376808 AGTGCCGAGTCATCTGAAAG 57.623 50.000 0.00 0.00 0.00 2.62
1051 1076 0.738975 TAGGACGAGATGAAGTGCCG 59.261 55.000 0.00 0.00 0.00 5.69
1068 1094 1.299468 GATCGCACTGGCCGAGTAG 60.299 63.158 7.41 0.00 36.38 2.57
1090 1116 1.202722 GGAACGGAGAAACCTGAACCA 60.203 52.381 0.00 0.00 36.31 3.67
1097 1123 1.278127 TGGATGAGGAACGGAGAAACC 59.722 52.381 0.00 0.00 0.00 3.27
1130 1156 0.680618 TTTAAGTGCGTCGGGGAAGA 59.319 50.000 0.00 0.00 0.00 2.87
1135 1161 2.289547 CCCATTATTTAAGTGCGTCGGG 59.710 50.000 0.00 0.00 0.00 5.14
1224 1256 2.837291 CTCTCCTCCCGCTCCCAG 60.837 72.222 0.00 0.00 0.00 4.45
1259 1291 3.820467 CCAGTGGTTTTCAACTCATAGCA 59.180 43.478 0.00 0.00 0.00 3.49
1295 1330 2.166254 GTCAAGAAGAGAGGAGGAGCAG 59.834 54.545 0.00 0.00 0.00 4.24
1296 1331 2.175202 GTCAAGAAGAGAGGAGGAGCA 58.825 52.381 0.00 0.00 0.00 4.26
1297 1332 2.094234 GTGTCAAGAAGAGAGGAGGAGC 60.094 54.545 0.00 0.00 0.00 4.70
2037 2157 4.388499 CACGGTCTGGTTCCCCCG 62.388 72.222 9.16 9.16 45.72 5.73
2258 2378 1.303155 GGCAGGGGCAGATGATAGC 60.303 63.158 0.00 0.00 43.71 2.97
2314 2443 3.110178 CCACGAAGTTCGCCGTCC 61.110 66.667 24.64 0.00 45.12 4.79
2361 2490 2.990066 AAGCTTACTGATCCCTTCGG 57.010 50.000 0.00 0.00 36.72 4.30
2378 2507 6.614160 TGTTCATGATCATGTTGCTTGTAAG 58.386 36.000 30.01 5.39 39.72 2.34
2412 2549 7.161404 ACACTACACACTCACATCAATGTATT 58.839 34.615 0.00 0.00 39.39 1.89
2413 2550 6.701340 ACACTACACACTCACATCAATGTAT 58.299 36.000 0.00 0.00 39.39 2.29
2414 2551 6.096673 ACACTACACACTCACATCAATGTA 57.903 37.500 0.00 0.00 39.39 2.29
2415 2552 4.960938 ACACTACACACTCACATCAATGT 58.039 39.130 0.00 0.00 42.84 2.71
2416 2553 5.578336 CCTACACTACACACTCACATCAATG 59.422 44.000 0.00 0.00 0.00 2.82
2417 2554 5.724328 CCTACACTACACACTCACATCAAT 58.276 41.667 0.00 0.00 0.00 2.57
2418 2555 4.560716 GCCTACACTACACACTCACATCAA 60.561 45.833 0.00 0.00 0.00 2.57
2419 2556 3.056821 GCCTACACTACACACTCACATCA 60.057 47.826 0.00 0.00 0.00 3.07
2420 2557 3.056821 TGCCTACACTACACACTCACATC 60.057 47.826 0.00 0.00 0.00 3.06
2421 2558 2.897326 TGCCTACACTACACACTCACAT 59.103 45.455 0.00 0.00 0.00 3.21
2422 2559 2.312390 TGCCTACACTACACACTCACA 58.688 47.619 0.00 0.00 0.00 3.58
2423 2560 3.380479 TTGCCTACACTACACACTCAC 57.620 47.619 0.00 0.00 0.00 3.51
2424 2561 4.617253 ATTTGCCTACACTACACACTCA 57.383 40.909 0.00 0.00 0.00 3.41
2425 2562 5.468746 TGAAATTTGCCTACACTACACACTC 59.531 40.000 0.00 0.00 0.00 3.51
2620 2788 6.058553 TCATCATTCAACACAGAAGGATCT 57.941 37.500 1.39 0.00 43.23 2.75
2658 2920 1.819632 GCAGACACTATTGCCCCCG 60.820 63.158 0.00 0.00 34.28 5.73
2721 2984 4.513692 TGTAACTGCACCACTGTTATTGAC 59.486 41.667 0.00 0.00 42.46 3.18
2736 2999 3.963665 TGCAACAATCACTTGTAACTGC 58.036 40.909 6.66 6.66 44.83 4.40
2925 3746 2.853731 ACGCACAGTCTATGTCTAGC 57.146 50.000 0.00 0.00 41.41 3.42
2935 3756 3.423645 GCTTAATCAGACAACGCACAGTC 60.424 47.826 0.00 0.00 35.02 3.51
2944 3765 4.202461 ACTGGGAAGTGCTTAATCAGACAA 60.202 41.667 12.26 0.00 0.00 3.18
3015 3836 2.698274 TCACACTCAAGTACTCAGGCAA 59.302 45.455 0.00 0.00 0.00 4.52
3068 3889 7.755373 GGTTTCTTCTTAAAGCACCACATTATC 59.245 37.037 0.00 0.00 36.37 1.75
3262 4084 2.616634 ACATAGAGAGTCCTCGCGTA 57.383 50.000 5.77 0.00 44.08 4.42
3286 4108 4.911390 AGAATAACAACCAGACAGGGAAG 58.089 43.478 0.00 0.00 43.89 3.46
3339 4161 2.170607 TCGGAGGATCAGGGAAACAATC 59.829 50.000 0.00 0.00 36.25 2.67
3469 4292 2.733858 GCCTGAAGTGTCGAGATCTGAC 60.734 54.545 0.00 9.05 36.88 3.51
3472 4295 0.453793 CGCCTGAAGTGTCGAGATCT 59.546 55.000 0.00 0.00 0.00 2.75
3478 4301 1.446792 ATGCTCGCCTGAAGTGTCG 60.447 57.895 0.00 0.00 0.00 4.35
3789 4612 6.347240 GGCTCTGAGTAATATTCTGAATTGCG 60.347 42.308 8.38 0.00 0.00 4.85
3827 4659 1.391933 ATGCTCACCCGTGCTCGATA 61.392 55.000 10.21 0.00 39.71 2.92
3977 4924 4.575645 TCGCCTTAGTTCTTCTACTAGCTC 59.424 45.833 0.00 0.00 32.54 4.09
3979 4926 4.096081 TGTCGCCTTAGTTCTTCTACTAGC 59.904 45.833 0.00 0.00 32.54 3.42
3987 4935 2.610727 GCAGTCTGTCGCCTTAGTTCTT 60.611 50.000 0.93 0.00 0.00 2.52
4014 4963 9.297037 GAATATAATGGGGCATAACACTAGTTT 57.703 33.333 0.00 0.00 39.15 2.66
4093 5042 1.069765 AGAGTGTTGACGGCTGTGG 59.930 57.895 0.80 0.00 0.00 4.17
4150 5099 8.548025 TGATAGAAAAATTGGATGTCCTAGTGA 58.452 33.333 0.09 0.00 36.82 3.41
4201 5150 6.631016 AGTGCTAACGTATCTTGATTCTTGA 58.369 36.000 0.00 0.00 0.00 3.02
4202 5151 6.893958 AGTGCTAACGTATCTTGATTCTTG 57.106 37.500 0.00 0.00 0.00 3.02
4204 5153 9.900710 CTATAAGTGCTAACGTATCTTGATTCT 57.099 33.333 0.00 0.00 33.67 2.40
4205 5154 8.640291 GCTATAAGTGCTAACGTATCTTGATTC 58.360 37.037 0.00 0.00 33.67 2.52
4206 5155 8.141909 TGCTATAAGTGCTAACGTATCTTGATT 58.858 33.333 0.00 0.00 33.67 2.57
4207 5156 7.658261 TGCTATAAGTGCTAACGTATCTTGAT 58.342 34.615 0.00 0.00 33.67 2.57
4262 5211 2.600867 GTGCTCTCGAAAGATTCTTCCG 59.399 50.000 0.00 0.00 40.84 4.30
4274 5223 1.524008 TTCTCTTGGCGTGCTCTCGA 61.524 55.000 0.00 0.00 0.00 4.04
4317 5266 0.108585 ATCGGTGATTGGGGGAATCG 59.891 55.000 0.00 0.00 43.22 3.34
4364 5313 1.315690 TAACTGTAGCGGGGATCGAG 58.684 55.000 0.00 0.00 42.43 4.04
4456 5405 0.182061 CCTCAGCCATGTATGTGCCT 59.818 55.000 0.00 0.00 0.00 4.75
4601 5550 1.679305 TCAGAGCCGGTCACTCCTC 60.679 63.158 1.90 0.00 34.56 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.