Multiple sequence alignment - TraesCS4A01G182800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G182800 chr4A 100.000 8093 0 0 1 8093 459638226 459630134 0.000000e+00 14946.0
1 TraesCS4A01G182800 chr4A 100.000 60 0 0 2594 2653 459635577 459635518 2.390000e-20 111.0
2 TraesCS4A01G182800 chr4A 100.000 60 0 0 2650 2709 459635633 459635574 2.390000e-20 111.0
3 TraesCS4A01G182800 chr4A 100.000 32 0 0 2594 2625 459635549 459635518 8.770000e-05 60.2
4 TraesCS4A01G182800 chr4A 100.000 32 0 0 2678 2709 459635633 459635602 8.770000e-05 60.2
5 TraesCS4A01G182800 chr4D 95.367 3799 117 14 2997 6766 116815324 116819092 0.000000e+00 5986.0
6 TraesCS4A01G182800 chr4D 92.898 2253 67 31 424 2625 116812981 116815191 0.000000e+00 3188.0
7 TraesCS4A01G182800 chr4D 97.615 671 16 0 6794 7464 116819089 116819759 0.000000e+00 1151.0
8 TraesCS4A01G182800 chr4D 89.493 552 29 12 7567 8093 116820099 116820646 0.000000e+00 671.0
9 TraesCS4A01G182800 chr4D 90.169 356 17 4 1 338 116812537 116812892 1.600000e-121 448.0
10 TraesCS4A01G182800 chr4D 96.000 175 5 1 2678 2852 116815160 116815332 4.780000e-72 283.0
11 TraesCS4A01G182800 chr4D 94.595 74 4 0 334 407 116812924 116812997 1.850000e-21 115.0
12 TraesCS4A01G182800 chr4D 100.000 32 0 0 2650 2681 116815160 116815191 8.770000e-05 60.2
13 TraesCS4A01G182800 chr4B 95.895 3703 131 10 2650 6345 178846286 178849974 0.000000e+00 5976.0
14 TraesCS4A01G182800 chr4B 94.300 2035 57 18 658 2653 178844331 178846345 0.000000e+00 3061.0
15 TraesCS4A01G182800 chr4B 96.898 935 25 3 6473 7404 178850293 178851226 0.000000e+00 1563.0
16 TraesCS4A01G182800 chr4B 95.596 386 17 0 7708 8093 178851263 178851648 3.210000e-173 619.0
17 TraesCS4A01G182800 chr4B 91.618 346 12 8 1 337 178843315 178843652 5.720000e-126 462.0
18 TraesCS4A01G182800 chr4B 93.750 176 6 1 489 664 178843844 178844014 8.060000e-65 259.0
19 TraesCS4A01G182800 chr4B 98.333 60 1 0 2622 2681 178846286 178846345 1.110000e-18 106.0
20 TraesCS4A01G182800 chr5D 78.301 2355 425 56 3708 6012 249791419 249789101 0.000000e+00 1439.0
21 TraesCS4A01G182800 chr5D 88.424 1123 114 14 985 2097 249793923 249792807 0.000000e+00 1339.0
22 TraesCS4A01G182800 chr5D 83.656 465 60 12 6942 7399 249527173 249526718 2.700000e-114 424.0
23 TraesCS4A01G182800 chr5A 78.036 2363 433 59 3705 6012 332300052 332297721 0.000000e+00 1410.0
24 TraesCS4A01G182800 chr5A 88.513 1123 116 12 985 2097 332302925 332301806 0.000000e+00 1347.0
25 TraesCS4A01G182800 chr5A 83.559 444 56 15 6966 7398 332219102 332218665 4.550000e-107 399.0
26 TraesCS4A01G182800 chr5B 78.093 2360 418 64 3705 6009 282390515 282388200 0.000000e+00 1402.0
27 TraesCS4A01G182800 chr5B 88.428 1132 109 15 985 2097 282393321 282392193 0.000000e+00 1345.0
28 TraesCS4A01G182800 chr5B 84.382 461 61 10 6942 7398 282268458 282268005 7.450000e-120 442.0
29 TraesCS4A01G182800 chr7B 83.396 1066 154 16 1001 2056 665725139 665726191 0.000000e+00 966.0
30 TraesCS4A01G182800 chr6B 82.091 1100 143 19 1001 2056 18590894 18591983 0.000000e+00 891.0
31 TraesCS4A01G182800 chr7A 87.500 112 14 0 1145 1256 115311199 115311310 6.590000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G182800 chr4A 459630134 459638226 8092 True 3057.680000 14946 100.000000 1 8093 5 chr4A.!!$R1 8092
1 TraesCS4A01G182800 chr4D 116812537 116820646 8109 False 1487.775000 5986 94.517125 1 8093 8 chr4D.!!$F1 8092
2 TraesCS4A01G182800 chr4B 178843315 178851648 8333 False 1720.857143 5976 95.198571 1 8093 7 chr4B.!!$F1 8092
3 TraesCS4A01G182800 chr5D 249789101 249793923 4822 True 1389.000000 1439 83.362500 985 6012 2 chr5D.!!$R2 5027
4 TraesCS4A01G182800 chr5A 332297721 332302925 5204 True 1378.500000 1410 83.274500 985 6012 2 chr5A.!!$R2 5027
5 TraesCS4A01G182800 chr5B 282388200 282393321 5121 True 1373.500000 1402 83.260500 985 6009 2 chr5B.!!$R2 5024
6 TraesCS4A01G182800 chr7B 665725139 665726191 1052 False 966.000000 966 83.396000 1001 2056 1 chr7B.!!$F1 1055
7 TraesCS4A01G182800 chr6B 18590894 18591983 1089 False 891.000000 891 82.091000 1001 2056 1 chr6B.!!$F1 1055

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
962 1397 0.178798 TCCCCTAACCCCAATCCCAA 60.179 55.0 0.00 0.00 0.00 4.12 F
1894 2376 0.771127 CCTCAAAGAACTGGTCCCCA 59.229 55.0 0.00 0.00 0.00 4.96 F
2843 3528 0.111253 AGGAGTTTGCCACCTGGAAG 59.889 55.0 0.00 0.00 37.39 3.46 F
4518 5928 0.391661 ACGTGTCACCATCATCTGCC 60.392 55.0 0.00 0.00 0.00 4.85 F
4840 6259 1.512926 CAAGCTACTTGTGGAACGCT 58.487 50.0 0.00 0.00 42.39 5.07 F
5542 6973 0.670162 TGACCAAGAAAAGCTGCAGC 59.330 50.0 31.53 31.53 42.49 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2823 3508 0.555769 TTCCAGGTGGCAAACTCCTT 59.444 50.0 0.00 0.00 41.02 3.36 R
3371 4641 0.558445 CGAATTTCCGTACGACGACG 59.442 55.0 18.76 5.58 46.05 5.12 R
4730 6149 0.327259 TCCAGAAGCTGCTGAATGCT 59.673 50.0 24.34 0.00 43.37 3.79 R
5410 6829 0.035820 TTATCACCGTGGCCTTCACC 60.036 55.0 3.32 0.00 43.23 4.02 R
5679 7113 0.396060 GGCTGTCCATGGATCTCTCC 59.604 60.0 19.62 11.24 42.45 3.71 R
7465 9189 0.035439 CAGTTTCGCCCTACCATGGT 60.035 55.0 23.55 23.55 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.068599 GCTTGCAGGGTAGAGATATTTCC 58.931 47.826 0.00 0.00 0.00 3.13
83 84 5.645497 AGATGTGAGCTGAGAATAAACCAAC 59.355 40.000 0.00 0.00 0.00 3.77
172 187 3.921677 TCGCGATAGGAAACTCTTTTGT 58.078 40.909 3.71 0.00 43.67 2.83
192 207 7.731882 TTTGTTTGCATGAATGATTTCACAT 57.268 28.000 0.00 0.00 44.36 3.21
200 215 5.556355 TGAATGATTTCACATGCAGAGAC 57.444 39.130 0.00 0.00 36.94 3.36
205 220 1.191489 TTCACATGCAGAGACGGGGA 61.191 55.000 0.00 0.00 0.00 4.81
240 255 8.027189 GGGAAACTAACTGAAATGATGTAAACC 58.973 37.037 0.00 0.00 0.00 3.27
266 281 0.749649 TTCCGCCAACACAGCAATTT 59.250 45.000 0.00 0.00 0.00 1.82
337 392 3.738982 AGCCAAAATTTGCAGTAAACCC 58.261 40.909 0.00 0.00 0.00 4.11
338 393 3.135530 AGCCAAAATTTGCAGTAAACCCA 59.864 39.130 0.00 0.00 0.00 4.51
407 462 4.772624 GGTGCCTTTCCTAGAAGGATTTTT 59.227 41.667 13.19 0.00 45.34 1.94
435 490 7.948034 TTTTGAAACAAGTTTCCTAGAAGGA 57.052 32.000 19.63 0.00 46.15 3.36
436 491 8.533569 TTTTGAAACAAGTTTCCTAGAAGGAT 57.466 30.769 19.63 0.00 45.34 3.24
437 492 8.533569 TTTGAAACAAGTTTCCTAGAAGGATT 57.466 30.769 19.63 0.00 45.34 3.01
460 515 1.143684 GCATATCTCATGGGTGGTGGT 59.856 52.381 0.00 0.00 0.00 4.16
461 516 2.854963 CATATCTCATGGGTGGTGGTG 58.145 52.381 0.00 0.00 0.00 4.17
462 517 1.212375 TATCTCATGGGTGGTGGTGG 58.788 55.000 0.00 0.00 0.00 4.61
474 529 1.069513 TGGTGGTGGTACTGTCTTTCG 59.930 52.381 0.00 0.00 0.00 3.46
485 540 0.383949 TGTCTTTCGCCCACTTTTGC 59.616 50.000 0.00 0.00 0.00 3.68
503 593 4.630644 TTGCAGGAGAAGAGAACAATCT 57.369 40.909 0.00 0.00 39.10 2.40
520 620 4.703060 TAGCTTGGCTGCAGCGCA 62.703 61.111 30.26 25.98 42.55 6.09
581 681 4.763310 CTGAGCTCAGCTGCATATATGCG 61.763 52.174 29.79 23.02 45.85 4.73
613 713 5.140454 GTGCTCCCTCCACCAAATTAATAT 58.860 41.667 0.00 0.00 0.00 1.28
657 762 2.665395 GCAGCAGCACTCACTGTCG 61.665 63.158 0.00 0.00 39.96 4.35
659 764 3.418068 GCAGCACTCACTGTCGCC 61.418 66.667 0.00 0.00 39.96 5.54
733 1160 5.710567 AGCAGATATCATCATCACCCAAATG 59.289 40.000 5.32 0.00 0.00 2.32
767 1194 2.416107 CTTCACCTGCCTTCCTGCCA 62.416 60.000 0.00 0.00 0.00 4.92
769 1196 1.304713 CACCTGCCTTCCTGCCAAT 60.305 57.895 0.00 0.00 0.00 3.16
771 1198 0.704076 ACCTGCCTTCCTGCCAATTA 59.296 50.000 0.00 0.00 0.00 1.40
772 1199 1.288932 ACCTGCCTTCCTGCCAATTAT 59.711 47.619 0.00 0.00 0.00 1.28
785 1217 5.046376 CCTGCCAATTATTTTTCTTCCAGGT 60.046 40.000 0.00 0.00 33.31 4.00
797 1229 4.003788 CCAGGTTCCAGCGACCGT 62.004 66.667 0.00 0.00 42.11 4.83
864 1296 4.436998 GCCTCGTCACCCGTCCAG 62.437 72.222 0.00 0.00 37.94 3.86
865 1297 2.989824 CCTCGTCACCCGTCCAGT 60.990 66.667 0.00 0.00 37.94 4.00
866 1298 2.258591 CTCGTCACCCGTCCAGTG 59.741 66.667 0.00 0.00 37.94 3.66
867 1299 2.203379 TCGTCACCCGTCCAGTGA 60.203 61.111 0.00 0.00 41.84 3.41
868 1300 1.595993 CTCGTCACCCGTCCAGTGAT 61.596 60.000 0.00 0.00 45.45 3.06
898 1333 1.663643 TGCGCGGAAAAGTAATAGCAG 59.336 47.619 8.83 0.00 0.00 4.24
932 1367 2.699954 GTGATTACCACCTGTCACTGG 58.300 52.381 0.00 0.00 39.86 4.00
951 1386 2.783288 CCCGCTCGACTCCCCTAAC 61.783 68.421 0.00 0.00 0.00 2.34
962 1397 0.178798 TCCCCTAACCCCAATCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
972 1407 1.458209 CAATCCCAATCCCAGCCCC 60.458 63.158 0.00 0.00 0.00 5.80
973 1408 1.940742 AATCCCAATCCCAGCCCCA 60.941 57.895 0.00 0.00 0.00 4.96
974 1409 1.953100 AATCCCAATCCCAGCCCCAG 61.953 60.000 0.00 0.00 0.00 4.45
975 1410 4.847367 CCCAATCCCAGCCCCAGC 62.847 72.222 0.00 0.00 40.32 4.85
977 1412 4.847367 CAATCCCAGCCCCAGCCC 62.847 72.222 0.00 0.00 41.25 5.19
1275 1738 4.067512 TCCGCCTCCTCTGCCTCT 62.068 66.667 0.00 0.00 0.00 3.69
1894 2376 0.771127 CCTCAAAGAACTGGTCCCCA 59.229 55.000 0.00 0.00 0.00 4.96
1989 2493 2.436646 CGTGTCTGGGTGATGGGC 60.437 66.667 0.00 0.00 0.00 5.36
2031 2535 3.072476 CCTACCTCACCTTCTTGTCCAAA 59.928 47.826 0.00 0.00 0.00 3.28
2321 2971 9.532494 TGGTTACTACTAACAAGGATTACTACA 57.468 33.333 0.00 0.00 34.88 2.74
2336 2986 8.334734 AGGATTACTACAGTAGTTCTTACTCCA 58.665 37.037 18.56 0.00 40.68 3.86
2524 3183 8.851541 AATGTTTTTACTCATCCCGTTTAGTA 57.148 30.769 0.00 0.00 0.00 1.82
2525 3184 7.656707 TGTTTTTACTCATCCCGTTTAGTAC 57.343 36.000 0.00 0.00 0.00 2.73
2626 3290 1.705186 AGGTGTGTTGTTATGGCCTCT 59.295 47.619 3.32 0.00 0.00 3.69
2627 3291 2.108250 AGGTGTGTTGTTATGGCCTCTT 59.892 45.455 3.32 0.00 0.00 2.85
2628 3292 3.329520 AGGTGTGTTGTTATGGCCTCTTA 59.670 43.478 3.32 0.00 0.00 2.10
2629 3293 4.018415 AGGTGTGTTGTTATGGCCTCTTAT 60.018 41.667 3.32 0.00 0.00 1.73
2630 3294 4.335594 GGTGTGTTGTTATGGCCTCTTATC 59.664 45.833 3.32 0.00 0.00 1.75
2631 3295 5.186198 GTGTGTTGTTATGGCCTCTTATCT 58.814 41.667 3.32 0.00 0.00 1.98
2632 3296 5.648092 GTGTGTTGTTATGGCCTCTTATCTT 59.352 40.000 3.32 0.00 0.00 2.40
2633 3297 5.647658 TGTGTTGTTATGGCCTCTTATCTTG 59.352 40.000 3.32 0.00 0.00 3.02
2634 3298 5.880332 GTGTTGTTATGGCCTCTTATCTTGA 59.120 40.000 3.32 0.00 0.00 3.02
2635 3299 6.037610 GTGTTGTTATGGCCTCTTATCTTGAG 59.962 42.308 3.32 0.00 0.00 3.02
2644 3308 4.899502 CCTCTTATCTTGAGGTGTGTTGT 58.100 43.478 0.00 0.00 44.42 3.32
2645 3309 5.308825 CCTCTTATCTTGAGGTGTGTTGTT 58.691 41.667 0.00 0.00 44.42 2.83
2646 3310 6.464222 CCTCTTATCTTGAGGTGTGTTGTTA 58.536 40.000 0.00 0.00 44.42 2.41
2647 3311 7.106239 CCTCTTATCTTGAGGTGTGTTGTTAT 58.894 38.462 0.00 0.00 44.42 1.89
2648 3312 7.065085 CCTCTTATCTTGAGGTGTGTTGTTATG 59.935 40.741 0.00 0.00 44.42 1.90
2649 3313 6.878923 TCTTATCTTGAGGTGTGTTGTTATGG 59.121 38.462 0.00 0.00 0.00 2.74
2650 3314 3.146066 TCTTGAGGTGTGTTGTTATGGC 58.854 45.455 0.00 0.00 0.00 4.40
2651 3315 1.904287 TGAGGTGTGTTGTTATGGCC 58.096 50.000 0.00 0.00 0.00 5.36
2652 3316 1.423541 TGAGGTGTGTTGTTATGGCCT 59.576 47.619 3.32 0.00 0.00 5.19
2653 3317 2.084546 GAGGTGTGTTGTTATGGCCTC 58.915 52.381 3.32 0.00 35.00 4.70
2654 3318 1.705186 AGGTGTGTTGTTATGGCCTCT 59.295 47.619 3.32 0.00 0.00 3.69
2655 3319 2.108250 AGGTGTGTTGTTATGGCCTCTT 59.892 45.455 3.32 0.00 0.00 2.85
2656 3320 3.329520 AGGTGTGTTGTTATGGCCTCTTA 59.670 43.478 3.32 0.00 0.00 2.10
2657 3321 4.018415 AGGTGTGTTGTTATGGCCTCTTAT 60.018 41.667 3.32 0.00 0.00 1.73
2658 3322 4.335594 GGTGTGTTGTTATGGCCTCTTATC 59.664 45.833 3.32 0.00 0.00 1.75
2659 3323 5.186198 GTGTGTTGTTATGGCCTCTTATCT 58.814 41.667 3.32 0.00 0.00 1.98
2660 3324 5.648092 GTGTGTTGTTATGGCCTCTTATCTT 59.352 40.000 3.32 0.00 0.00 2.40
2661 3325 5.647658 TGTGTTGTTATGGCCTCTTATCTTG 59.352 40.000 3.32 0.00 0.00 3.02
2662 3326 5.880332 GTGTTGTTATGGCCTCTTATCTTGA 59.120 40.000 3.32 0.00 0.00 3.02
2663 3327 6.037610 GTGTTGTTATGGCCTCTTATCTTGAG 59.962 42.308 3.32 0.00 0.00 3.02
2672 3336 4.899502 CCTCTTATCTTGAGGTGTGTTGT 58.100 43.478 0.00 0.00 44.42 3.32
2673 3337 5.308825 CCTCTTATCTTGAGGTGTGTTGTT 58.691 41.667 0.00 0.00 44.42 2.83
2674 3338 6.464222 CCTCTTATCTTGAGGTGTGTTGTTA 58.536 40.000 0.00 0.00 44.42 2.41
2675 3339 7.106239 CCTCTTATCTTGAGGTGTGTTGTTAT 58.894 38.462 0.00 0.00 44.42 1.89
2676 3340 7.065085 CCTCTTATCTTGAGGTGTGTTGTTATG 59.935 40.741 0.00 0.00 44.42 1.90
2677 3341 6.878923 TCTTATCTTGAGGTGTGTTGTTATGG 59.121 38.462 0.00 0.00 0.00 2.74
2678 3342 3.146066 TCTTGAGGTGTGTTGTTATGGC 58.854 45.455 0.00 0.00 0.00 4.40
2679 3343 1.904287 TGAGGTGTGTTGTTATGGCC 58.096 50.000 0.00 0.00 0.00 5.36
2680 3344 1.423541 TGAGGTGTGTTGTTATGGCCT 59.576 47.619 3.32 0.00 0.00 5.19
2681 3345 2.084546 GAGGTGTGTTGTTATGGCCTC 58.915 52.381 3.32 0.00 35.00 4.70
2729 3393 2.380084 TGGAGGTTACGTTGATGCTC 57.620 50.000 0.00 0.00 0.00 4.26
2761 3425 5.339008 ACAGACTGAAGTTGTGTTACTGA 57.661 39.130 10.08 0.00 0.00 3.41
2764 3428 4.649674 AGACTGAAGTTGTGTTACTGAGGA 59.350 41.667 0.00 0.00 0.00 3.71
2823 3508 6.442541 TGTCCTTTAGAGGTTTCAATGGTA 57.557 37.500 0.00 0.00 43.97 3.25
2842 3527 0.555769 AAGGAGTTTGCCACCTGGAA 59.444 50.000 0.00 0.00 37.39 3.53
2843 3528 0.111253 AGGAGTTTGCCACCTGGAAG 59.889 55.000 0.00 0.00 37.39 3.46
2917 3631 2.733956 TCAGGGTTTGCAACTTCTGTT 58.266 42.857 16.63 0.00 35.64 3.16
2927 3641 7.168135 GGTTTGCAACTTCTGTTTCTAAGATTG 59.832 37.037 0.00 0.00 33.52 2.67
2931 3645 7.074502 GCAACTTCTGTTTCTAAGATTGACAG 58.925 38.462 0.00 0.00 39.16 3.51
2961 3675 5.074746 TCTATCCCTGATTACCTGTGCTA 57.925 43.478 0.00 0.00 0.00 3.49
2984 3698 0.984995 ACCCCTAGTGTTTCTGCTCC 59.015 55.000 0.00 0.00 0.00 4.70
2985 3699 0.984230 CCCCTAGTGTTTCTGCTCCA 59.016 55.000 0.00 0.00 0.00 3.86
3064 4151 8.543774 CAACGAGAAGATTACATATTTCCACTC 58.456 37.037 0.00 0.00 0.00 3.51
3083 4170 1.217183 TCTCTGGGAGCGGGTTACTAT 59.783 52.381 0.00 0.00 0.00 2.12
3097 4199 9.239551 AGCGGGTTACTATTTTAAATTCTTCTT 57.760 29.630 0.00 0.00 0.00 2.52
3135 4237 7.943413 TTGTGTGATGTATTGATGGTTTTTG 57.057 32.000 0.00 0.00 0.00 2.44
3371 4641 2.098770 GGTGATGGAGTACTGTCGTACC 59.901 54.545 0.00 0.00 45.68 3.34
3374 4644 1.442769 TGGAGTACTGTCGTACCGTC 58.557 55.000 0.00 0.00 45.68 4.79
3605 4875 3.237746 TCTGATGCATTGGACCCAAAAA 58.762 40.909 0.00 0.00 39.55 1.94
3727 5107 3.364964 GGCCTAACGATGTCAAACTTGTG 60.365 47.826 0.00 0.00 0.00 3.33
3745 5126 4.177165 TGTGTTTGCAGCTTTATGGATG 57.823 40.909 0.00 0.00 0.00 3.51
3762 5143 0.967380 ATGCGCTCCTTCCTTTTGGG 60.967 55.000 9.73 0.00 40.87 4.12
3852 5233 6.238211 GGTGTCAACAGTGCAATGATAGATAC 60.238 42.308 22.73 19.87 0.00 2.24
4003 5384 3.002348 GGTGTGAAGCGGCTTACATATTC 59.998 47.826 16.38 1.65 0.00 1.75
4012 5393 4.025647 GCGGCTTACATATTCTGTGACTTC 60.026 45.833 0.00 0.00 38.92 3.01
4014 5395 6.504398 CGGCTTACATATTCTGTGACTTCTA 58.496 40.000 0.00 0.00 38.92 2.10
4015 5396 6.978659 CGGCTTACATATTCTGTGACTTCTAA 59.021 38.462 0.00 0.00 38.92 2.10
4016 5397 7.168302 CGGCTTACATATTCTGTGACTTCTAAG 59.832 40.741 0.00 0.00 38.92 2.18
4017 5398 7.982354 GGCTTACATATTCTGTGACTTCTAAGT 59.018 37.037 0.00 0.00 39.61 2.24
4056 5442 1.933853 GCCGTCGTTTTGATAGATGCT 59.066 47.619 0.00 0.00 0.00 3.79
4416 5808 5.256474 AGGAATGACAACCTTACATTGGAG 58.744 41.667 0.00 0.00 34.94 3.86
4457 5867 2.373169 AGAGTGATGAAAAGCAGTCCCA 59.627 45.455 0.00 0.00 35.55 4.37
4487 5897 4.033009 ACCCTGTCATACTGTCATGATCA 58.967 43.478 0.00 0.00 37.28 2.92
4488 5898 4.657504 ACCCTGTCATACTGTCATGATCAT 59.342 41.667 1.18 1.18 37.28 2.45
4489 5899 5.221601 ACCCTGTCATACTGTCATGATCATC 60.222 44.000 4.86 0.00 37.28 2.92
4490 5900 5.221581 CCCTGTCATACTGTCATGATCATCA 60.222 44.000 4.86 0.79 37.28 3.07
4518 5928 0.391661 ACGTGTCACCATCATCTGCC 60.392 55.000 0.00 0.00 0.00 4.85
4520 5930 0.391661 GTGTCACCATCATCTGCCGT 60.392 55.000 0.00 0.00 0.00 5.68
4575 5985 3.624777 TCATGAATCTTCTTCCAAGGGC 58.375 45.455 0.00 0.00 0.00 5.19
4639 6058 9.213777 AGATATCTGTACCCAAGAAAGTTGATA 57.786 33.333 3.89 0.00 0.00 2.15
4730 6149 2.426522 GCAAACATCACCTAGTGCTCA 58.573 47.619 0.00 0.00 32.98 4.26
4840 6259 1.512926 CAAGCTACTTGTGGAACGCT 58.487 50.000 0.00 0.00 42.39 5.07
5317 6736 2.842208 CAAAAGCGTGTCTGTTGGAA 57.158 45.000 0.00 0.00 36.56 3.53
5542 6973 0.670162 TGACCAAGAAAAGCTGCAGC 59.330 50.000 31.53 31.53 42.49 5.25
5679 7113 2.205074 GACAACTCATATGGCACTCCG 58.795 52.381 2.13 0.00 34.14 4.63
5766 7200 0.874390 ACAAAGTCGCCGACTACGTA 59.126 50.000 21.55 0.00 42.59 3.57
6037 7474 2.452600 TGGTTTTGGAGGTTTGCTCT 57.547 45.000 0.00 0.00 0.00 4.09
6083 7520 7.161404 TGGTGAAATGATGGTATCTGTATAGC 58.839 38.462 0.00 0.00 36.74 2.97
6156 7593 3.357203 TGCCGGGAAATAATTTGTAGCA 58.643 40.909 2.18 0.00 0.00 3.49
6367 8088 3.526931 TGCTAGTGGCTCACATTCTAC 57.473 47.619 0.00 0.00 42.39 2.59
6372 8093 4.130286 AGTGGCTCACATTCTACTTAGC 57.870 45.455 7.86 0.00 36.74 3.09
6401 8122 2.079925 GTTTGGCCAACTTGTTTTGCA 58.920 42.857 20.35 0.00 31.92 4.08
6421 8142 5.171476 TGCAACGAAGGTTCAAATTGAAAA 58.829 33.333 10.27 0.00 38.22 2.29
6424 8145 7.148340 TGCAACGAAGGTTCAAATTGAAAATTT 60.148 29.630 10.27 5.32 38.22 1.82
6447 8168 2.525368 AGGTTAGTGGGCCAACATTTC 58.475 47.619 14.26 0.00 0.00 2.17
6458 8179 5.248020 TGGGCCAACATTTCATATTTTCAGT 59.752 36.000 2.13 0.00 0.00 3.41
6470 8191 9.844257 TTTCATATTTTCAGTGTTGGGAATTTT 57.156 25.926 0.00 0.00 0.00 1.82
6580 8301 4.473477 AGTACACAAAGATGAGTAGCCC 57.527 45.455 0.00 0.00 34.01 5.19
6828 8549 9.412460 TGCTAATTCTAATGAATGGTCTGAATT 57.588 29.630 0.00 0.00 41.62 2.17
6848 8569 6.924612 TGAATTTCATCAACCAATCAACACAG 59.075 34.615 0.00 0.00 0.00 3.66
7006 8727 3.074538 AGCTTGGGTCAGTTTGGTAGAAT 59.925 43.478 0.00 0.00 0.00 2.40
7053 8774 1.107114 TGATCGACTCTCAAGCTCCC 58.893 55.000 0.00 0.00 0.00 4.30
7123 8844 2.557056 CTCGCGGTAATATCTTCCCAGA 59.443 50.000 6.13 0.00 0.00 3.86
7398 9122 1.849039 AGGTAGCTCCATTCCTGCAAT 59.151 47.619 0.00 0.00 39.02 3.56
7409 9133 6.072649 TCCATTCCTGCAATGATGATTACAT 58.927 36.000 0.00 0.00 44.40 2.29
7464 9188 3.932822 TGAGCGCTGGTGAAATAGTAAA 58.067 40.909 18.48 0.00 0.00 2.01
7465 9189 4.320023 TGAGCGCTGGTGAAATAGTAAAA 58.680 39.130 18.48 0.00 0.00 1.52
7466 9190 4.153475 TGAGCGCTGGTGAAATAGTAAAAC 59.847 41.667 18.48 0.00 0.00 2.43
7467 9191 3.439129 AGCGCTGGTGAAATAGTAAAACC 59.561 43.478 10.39 0.00 0.00 3.27
7468 9192 3.189702 GCGCTGGTGAAATAGTAAAACCA 59.810 43.478 0.00 0.00 38.57 3.67
7469 9193 4.142469 GCGCTGGTGAAATAGTAAAACCAT 60.142 41.667 0.00 0.00 40.04 3.55
7470 9194 5.331902 CGCTGGTGAAATAGTAAAACCATG 58.668 41.667 0.00 0.00 40.04 3.66
7471 9195 5.650543 GCTGGTGAAATAGTAAAACCATGG 58.349 41.667 11.19 11.19 40.04 3.66
7472 9196 5.185056 GCTGGTGAAATAGTAAAACCATGGT 59.815 40.000 13.00 13.00 40.04 3.55
7473 9197 6.376018 GCTGGTGAAATAGTAAAACCATGGTA 59.624 38.462 20.12 0.46 40.04 3.25
7474 9198 7.415206 GCTGGTGAAATAGTAAAACCATGGTAG 60.415 40.741 20.12 6.81 40.04 3.18
7475 9199 6.887545 TGGTGAAATAGTAAAACCATGGTAGG 59.112 38.462 20.12 0.00 36.01 3.18
7476 9200 6.320418 GGTGAAATAGTAAAACCATGGTAGGG 59.680 42.308 20.12 0.00 0.00 3.53
7477 9201 5.889289 TGAAATAGTAAAACCATGGTAGGGC 59.111 40.000 20.12 9.46 0.00 5.19
7478 9202 2.413310 AGTAAAACCATGGTAGGGCG 57.587 50.000 20.12 0.00 0.00 6.13
7479 9203 1.910671 AGTAAAACCATGGTAGGGCGA 59.089 47.619 20.12 0.00 0.00 5.54
7480 9204 2.306512 AGTAAAACCATGGTAGGGCGAA 59.693 45.455 20.12 0.00 0.00 4.70
7481 9205 2.296073 AAAACCATGGTAGGGCGAAA 57.704 45.000 20.12 0.00 0.00 3.46
7482 9206 1.541379 AAACCATGGTAGGGCGAAAC 58.459 50.000 20.12 0.00 0.00 2.78
7483 9207 0.696501 AACCATGGTAGGGCGAAACT 59.303 50.000 20.12 0.00 0.00 2.66
7484 9208 0.035439 ACCATGGTAGGGCGAAACTG 60.035 55.000 18.10 0.00 0.00 3.16
7485 9209 1.376609 CCATGGTAGGGCGAAACTGC 61.377 60.000 2.57 0.00 0.00 4.40
7486 9210 0.676466 CATGGTAGGGCGAAACTGCA 60.676 55.000 0.00 0.00 36.28 4.41
7487 9211 0.255890 ATGGTAGGGCGAAACTGCAT 59.744 50.000 0.00 0.00 36.28 3.96
7488 9212 0.392461 TGGTAGGGCGAAACTGCATC 60.392 55.000 0.00 0.00 36.28 3.91
7489 9213 1.095807 GGTAGGGCGAAACTGCATCC 61.096 60.000 0.00 0.00 36.28 3.51
7490 9214 1.153449 TAGGGCGAAACTGCATCCG 60.153 57.895 0.00 0.00 36.28 4.18
7491 9215 1.895020 TAGGGCGAAACTGCATCCGT 61.895 55.000 0.00 0.00 36.28 4.69
7492 9216 2.480555 GGCGAAACTGCATCCGTG 59.519 61.111 0.00 0.00 36.28 4.94
7493 9217 2.480555 GCGAAACTGCATCCGTGG 59.519 61.111 0.00 0.00 34.15 4.94
7494 9218 2.325082 GCGAAACTGCATCCGTGGT 61.325 57.895 0.00 0.00 34.15 4.16
7495 9219 1.852067 GCGAAACTGCATCCGTGGTT 61.852 55.000 0.00 0.00 34.15 3.67
7496 9220 0.110238 CGAAACTGCATCCGTGGTTG 60.110 55.000 0.00 0.00 0.00 3.77
7497 9221 0.240945 GAAACTGCATCCGTGGTTGG 59.759 55.000 0.00 0.00 0.00 3.77
7498 9222 1.178534 AAACTGCATCCGTGGTTGGG 61.179 55.000 0.00 0.00 0.00 4.12
7499 9223 2.751436 CTGCATCCGTGGTTGGGG 60.751 66.667 0.00 0.00 0.00 4.96
7500 9224 4.358841 TGCATCCGTGGTTGGGGG 62.359 66.667 0.00 0.00 0.00 5.40
7501 9225 4.041762 GCATCCGTGGTTGGGGGA 62.042 66.667 0.00 0.00 0.00 4.81
7502 9226 2.760477 CATCCGTGGTTGGGGGAA 59.240 61.111 0.00 0.00 32.71 3.97
7503 9227 1.075836 CATCCGTGGTTGGGGGAAA 59.924 57.895 0.00 0.00 32.71 3.13
7504 9228 0.540830 CATCCGTGGTTGGGGGAAAA 60.541 55.000 0.00 0.00 32.71 2.29
7505 9229 0.411848 ATCCGTGGTTGGGGGAAAAT 59.588 50.000 0.00 0.00 32.71 1.82
7506 9230 0.188834 TCCGTGGTTGGGGGAAAATT 59.811 50.000 0.00 0.00 0.00 1.82
7507 9231 0.606096 CCGTGGTTGGGGGAAAATTC 59.394 55.000 0.00 0.00 0.00 2.17
7508 9232 1.627864 CGTGGTTGGGGGAAAATTCT 58.372 50.000 0.00 0.00 0.00 2.40
7509 9233 2.555670 CCGTGGTTGGGGGAAAATTCTA 60.556 50.000 0.00 0.00 0.00 2.10
7510 9234 2.752903 CGTGGTTGGGGGAAAATTCTAG 59.247 50.000 0.00 0.00 0.00 2.43
7511 9235 3.774734 GTGGTTGGGGGAAAATTCTAGT 58.225 45.455 0.00 0.00 0.00 2.57
7512 9236 4.157246 GTGGTTGGGGGAAAATTCTAGTT 58.843 43.478 0.00 0.00 0.00 2.24
7513 9237 4.219944 GTGGTTGGGGGAAAATTCTAGTTC 59.780 45.833 0.00 0.00 0.00 3.01
7514 9238 4.140900 TGGTTGGGGGAAAATTCTAGTTCA 60.141 41.667 0.00 0.00 0.00 3.18
7515 9239 4.836175 GGTTGGGGGAAAATTCTAGTTCAA 59.164 41.667 0.00 0.00 0.00 2.69
7516 9240 5.279306 GGTTGGGGGAAAATTCTAGTTCAAC 60.279 44.000 0.00 0.00 0.00 3.18
7517 9241 5.068215 TGGGGGAAAATTCTAGTTCAACA 57.932 39.130 0.00 0.00 0.00 3.33
7518 9242 4.830600 TGGGGGAAAATTCTAGTTCAACAC 59.169 41.667 0.00 0.00 0.00 3.32
7519 9243 4.082949 GGGGGAAAATTCTAGTTCAACACG 60.083 45.833 0.00 0.00 0.00 4.49
7520 9244 4.473199 GGGAAAATTCTAGTTCAACACGC 58.527 43.478 0.00 0.00 0.00 5.34
7521 9245 4.023536 GGGAAAATTCTAGTTCAACACGCA 60.024 41.667 0.00 0.00 0.00 5.24
7522 9246 5.147162 GGAAAATTCTAGTTCAACACGCAG 58.853 41.667 0.00 0.00 0.00 5.18
7523 9247 5.049680 GGAAAATTCTAGTTCAACACGCAGA 60.050 40.000 0.00 0.00 0.00 4.26
7524 9248 6.371809 AAAATTCTAGTTCAACACGCAGAA 57.628 33.333 0.00 0.00 36.40 3.02
7525 9249 6.371809 AAATTCTAGTTCAACACGCAGAAA 57.628 33.333 0.00 0.00 35.90 2.52
7526 9250 5.597813 ATTCTAGTTCAACACGCAGAAAG 57.402 39.130 0.00 0.00 35.90 2.62
7527 9251 3.390135 TCTAGTTCAACACGCAGAAAGG 58.610 45.455 0.00 0.00 0.00 3.11
7528 9252 2.325583 AGTTCAACACGCAGAAAGGA 57.674 45.000 0.00 0.00 0.00 3.36
7529 9253 2.639065 AGTTCAACACGCAGAAAGGAA 58.361 42.857 0.00 0.00 0.00 3.36
7530 9254 2.354821 AGTTCAACACGCAGAAAGGAAC 59.645 45.455 0.00 0.00 34.82 3.62
7531 9255 2.031258 TCAACACGCAGAAAGGAACA 57.969 45.000 0.00 0.00 0.00 3.18
7532 9256 2.360844 TCAACACGCAGAAAGGAACAA 58.639 42.857 0.00 0.00 0.00 2.83
7533 9257 2.096819 TCAACACGCAGAAAGGAACAAC 59.903 45.455 0.00 0.00 0.00 3.32
7534 9258 1.745232 ACACGCAGAAAGGAACAACA 58.255 45.000 0.00 0.00 0.00 3.33
7535 9259 2.297701 ACACGCAGAAAGGAACAACAT 58.702 42.857 0.00 0.00 0.00 2.71
7536 9260 2.687935 ACACGCAGAAAGGAACAACATT 59.312 40.909 0.00 0.00 0.00 2.71
7537 9261 3.880490 ACACGCAGAAAGGAACAACATTA 59.120 39.130 0.00 0.00 0.00 1.90
7538 9262 4.219033 CACGCAGAAAGGAACAACATTAC 58.781 43.478 0.00 0.00 0.00 1.89
7539 9263 3.880490 ACGCAGAAAGGAACAACATTACA 59.120 39.130 0.00 0.00 0.00 2.41
7540 9264 4.024048 ACGCAGAAAGGAACAACATTACAG 60.024 41.667 0.00 0.00 0.00 2.74
7541 9265 4.213270 CGCAGAAAGGAACAACATTACAGA 59.787 41.667 0.00 0.00 0.00 3.41
7542 9266 5.452777 GCAGAAAGGAACAACATTACAGAC 58.547 41.667 0.00 0.00 0.00 3.51
7543 9267 5.008613 GCAGAAAGGAACAACATTACAGACA 59.991 40.000 0.00 0.00 0.00 3.41
7544 9268 6.430451 CAGAAAGGAACAACATTACAGACAC 58.570 40.000 0.00 0.00 0.00 3.67
7545 9269 5.236478 AGAAAGGAACAACATTACAGACACG 59.764 40.000 0.00 0.00 0.00 4.49
7546 9270 4.067972 AGGAACAACATTACAGACACGT 57.932 40.909 0.00 0.00 0.00 4.49
7547 9271 4.448210 AGGAACAACATTACAGACACGTT 58.552 39.130 0.00 0.00 0.00 3.99
7548 9272 4.879545 AGGAACAACATTACAGACACGTTT 59.120 37.500 0.00 0.00 0.00 3.60
7549 9273 6.050432 AGGAACAACATTACAGACACGTTTA 58.950 36.000 0.00 0.00 0.00 2.01
7550 9274 6.708949 AGGAACAACATTACAGACACGTTTAT 59.291 34.615 0.00 0.00 0.00 1.40
7551 9275 6.795114 GGAACAACATTACAGACACGTTTATG 59.205 38.462 0.00 0.00 0.00 1.90
7552 9276 6.854496 ACAACATTACAGACACGTTTATGT 57.146 33.333 7.20 7.20 34.78 2.29
7553 9277 7.949903 ACAACATTACAGACACGTTTATGTA 57.050 32.000 5.14 5.14 31.24 2.29
7554 9278 8.014322 ACAACATTACAGACACGTTTATGTAG 57.986 34.615 8.95 2.56 31.24 2.74
7555 9279 6.642683 ACATTACAGACACGTTTATGTAGC 57.357 37.500 8.95 0.00 31.24 3.58
7556 9280 6.160684 ACATTACAGACACGTTTATGTAGCA 58.839 36.000 8.95 0.00 31.24 3.49
7557 9281 6.816640 ACATTACAGACACGTTTATGTAGCAT 59.183 34.615 8.95 0.00 31.24 3.79
7558 9282 7.977293 ACATTACAGACACGTTTATGTAGCATA 59.023 33.333 8.95 0.00 31.24 3.14
7559 9283 8.813282 CATTACAGACACGTTTATGTAGCATAA 58.187 33.333 8.95 0.00 31.24 1.90
7560 9284 8.936070 TTACAGACACGTTTATGTAGCATAAT 57.064 30.769 8.95 0.00 31.24 1.28
7561 9285 7.843490 ACAGACACGTTTATGTAGCATAATT 57.157 32.000 0.00 0.00 31.24 1.40
7562 9286 8.936070 ACAGACACGTTTATGTAGCATAATTA 57.064 30.769 0.00 0.00 31.24 1.40
7563 9287 9.542462 ACAGACACGTTTATGTAGCATAATTAT 57.458 29.630 0.00 0.00 31.24 1.28
7620 9581 6.825610 AGATGTTCAGAAGATGAGGTAATCC 58.174 40.000 0.00 0.00 39.68 3.01
7648 9609 7.724305 TTTTCTGTAACTATGTCTGTTCCAC 57.276 36.000 0.00 0.00 0.00 4.02
7658 9619 0.325933 TCTGTTCCACCTGCCATGAG 59.674 55.000 0.00 0.00 0.00 2.90
7690 9678 5.281727 TGCTAACTCATGAACTATGCGTAG 58.718 41.667 11.54 11.54 33.77 3.51
7909 9907 5.300034 TCAAGTTAGTTGTTCAGTCCGAGTA 59.700 40.000 0.00 0.00 37.43 2.59
7932 9930 4.935885 CTTGGAAGCAAGCAGTACTAAG 57.064 45.455 0.00 0.00 0.00 2.18
7946 9944 5.178067 GCAGTACTAAGAAAACCGTTAGCAA 59.822 40.000 0.00 0.00 30.57 3.91
7967 9965 2.469826 TCGCTTACAGCATATGGAACG 58.530 47.619 4.56 0.00 42.58 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 5.707298 ACATCTCATCCAAAAAGGTGTACAG 59.293 40.000 0.00 0.00 32.71 2.74
192 207 0.762418 TCTTTTTCCCCGTCTCTGCA 59.238 50.000 0.00 0.00 0.00 4.41
200 215 2.160205 GTTTCCCTCTCTTTTTCCCCG 58.840 52.381 0.00 0.00 0.00 5.73
205 220 8.633561 CATTTCAGTTAGTTTCCCTCTCTTTTT 58.366 33.333 0.00 0.00 0.00 1.94
240 255 2.159517 GCTGTGTTGGCGGAAAGATAAG 60.160 50.000 0.00 0.00 0.00 1.73
323 342 2.608623 AGGCTTGGGTTTACTGCAAAT 58.391 42.857 0.00 0.00 0.00 2.32
358 413 0.968901 TAGCGCTATGGATACCCCCG 60.969 60.000 14.45 0.00 0.00 5.73
411 466 7.948034 TCCTTCTAGGAAACTTGTTTCAAAA 57.052 32.000 22.51 12.17 42.51 2.44
426 481 7.120873 CCATGAGATATGCAAAATCCTTCTAGG 59.879 40.741 8.40 0.00 36.46 3.02
427 482 7.120873 CCCATGAGATATGCAAAATCCTTCTAG 59.879 40.741 8.40 0.00 0.00 2.43
428 483 6.944290 CCCATGAGATATGCAAAATCCTTCTA 59.056 38.462 8.40 0.00 0.00 2.10
429 484 5.773680 CCCATGAGATATGCAAAATCCTTCT 59.226 40.000 8.40 0.00 0.00 2.85
430 485 5.537674 ACCCATGAGATATGCAAAATCCTTC 59.462 40.000 8.40 2.92 0.00 3.46
431 486 5.303589 CACCCATGAGATATGCAAAATCCTT 59.696 40.000 8.40 0.00 0.00 3.36
432 487 4.831155 CACCCATGAGATATGCAAAATCCT 59.169 41.667 8.40 0.00 0.00 3.24
433 488 4.021719 CCACCCATGAGATATGCAAAATCC 60.022 45.833 8.40 2.72 0.00 3.01
434 489 4.586001 ACCACCCATGAGATATGCAAAATC 59.414 41.667 0.00 0.00 0.00 2.17
435 490 4.342951 CACCACCCATGAGATATGCAAAAT 59.657 41.667 0.00 0.00 0.00 1.82
436 491 3.700539 CACCACCCATGAGATATGCAAAA 59.299 43.478 0.00 0.00 0.00 2.44
437 492 3.289836 CACCACCCATGAGATATGCAAA 58.710 45.455 0.00 0.00 0.00 3.68
460 515 0.034337 GTGGGCGAAAGACAGTACCA 59.966 55.000 0.00 0.00 45.40 3.25
461 516 0.320697 AGTGGGCGAAAGACAGTACC 59.679 55.000 0.00 0.00 45.40 3.34
462 517 2.165319 AAGTGGGCGAAAGACAGTAC 57.835 50.000 0.00 0.00 45.40 2.73
474 529 0.600057 CTTCTCCTGCAAAAGTGGGC 59.400 55.000 0.00 0.00 0.00 5.36
485 540 5.596836 AGCTAGATTGTTCTCTTCTCCTG 57.403 43.478 0.00 0.00 33.17 3.86
503 593 4.703060 TGCGCTGCAGCCAAGCTA 62.703 61.111 32.07 16.73 36.40 3.32
520 620 4.639726 TGGGTAGACCACTGTGCT 57.360 55.556 1.29 0.00 46.80 4.40
548 648 0.605083 TGAGCTCAGTGGCAGTACAG 59.395 55.000 13.74 0.00 34.17 2.74
581 681 1.452833 GAGGGAGCACCAAGGCATC 60.453 63.158 1.58 0.00 43.89 3.91
613 713 3.645687 CTGGAGTGGGGGAAAATGAAAAA 59.354 43.478 0.00 0.00 0.00 1.94
657 762 3.188786 GACAGCGACGGTGATGGC 61.189 66.667 31.66 14.42 34.87 4.40
659 764 1.807165 CCTGACAGCGACGGTGATG 60.807 63.158 31.66 19.24 34.87 3.07
733 1160 5.010282 CAGGTGAAGGGGTTTATATATGCC 58.990 45.833 0.00 0.00 0.00 4.40
767 1194 6.572314 CGCTGGAACCTGGAAGAAAAATAATT 60.572 38.462 0.00 0.00 34.07 1.40
769 1196 4.217550 CGCTGGAACCTGGAAGAAAAATAA 59.782 41.667 0.00 0.00 34.07 1.40
771 1198 2.558359 CGCTGGAACCTGGAAGAAAAAT 59.442 45.455 0.00 0.00 34.07 1.82
772 1199 1.953686 CGCTGGAACCTGGAAGAAAAA 59.046 47.619 0.00 0.00 34.07 1.94
800 1232 1.342672 TAGAGGAAACATCCGGGGGC 61.343 60.000 0.00 0.00 34.28 5.80
806 1238 5.409826 CGGATTGCTAATAGAGGAAACATCC 59.590 44.000 0.00 0.00 39.19 3.51
807 1239 5.106908 GCGGATTGCTAATAGAGGAAACATC 60.107 44.000 0.00 0.00 39.19 3.06
860 1292 0.319813 CACGCACACTGATCACTGGA 60.320 55.000 7.20 0.00 0.00 3.86
864 1296 2.471607 CGCACGCACACTGATCAC 59.528 61.111 0.00 0.00 0.00 3.06
865 1297 3.413861 GCGCACGCACACTGATCA 61.414 61.111 10.65 0.00 41.49 2.92
866 1298 4.489795 CGCGCACGCACACTGATC 62.490 66.667 16.04 0.00 42.06 2.92
951 1386 1.458209 GCTGGGATTGGGATTGGGG 60.458 63.158 0.00 0.00 0.00 4.96
1860 2342 2.890808 TGAGGTCACCGATGCTTATC 57.109 50.000 0.00 0.00 0.00 1.75
1894 2376 4.421479 CTGGAGCTCGCCGTCGTT 62.421 66.667 7.83 0.00 36.96 3.85
2320 2970 5.980116 CCGATCATTGGAGTAAGAACTACTG 59.020 44.000 0.00 0.00 41.17 2.74
2321 2971 5.452077 GCCGATCATTGGAGTAAGAACTACT 60.452 44.000 0.00 0.00 43.95 2.57
2322 2972 4.745620 GCCGATCATTGGAGTAAGAACTAC 59.254 45.833 0.00 0.00 35.56 2.73
2323 2973 4.499188 CGCCGATCATTGGAGTAAGAACTA 60.499 45.833 0.00 0.00 35.56 2.24
2324 2974 3.738281 CGCCGATCATTGGAGTAAGAACT 60.738 47.826 0.00 0.00 39.21 3.01
2336 2986 7.655490 ACTAAACTAATAGTACGCCGATCATT 58.345 34.615 0.00 0.00 34.40 2.57
2483 3142 9.015577 GTAAAAACATTCAGAAAACAATCGACA 57.984 29.630 0.00 0.00 0.00 4.35
2524 3183 5.753921 GCACTGAGAAAACAACTGTACTAGT 59.246 40.000 0.00 0.00 42.89 2.57
2525 3184 5.986135 AGCACTGAGAAAACAACTGTACTAG 59.014 40.000 0.00 0.00 0.00 2.57
2626 3290 5.414454 GCCATAACAACACACCTCAAGATAA 59.586 40.000 0.00 0.00 0.00 1.75
2627 3291 4.941263 GCCATAACAACACACCTCAAGATA 59.059 41.667 0.00 0.00 0.00 1.98
2628 3292 3.758554 GCCATAACAACACACCTCAAGAT 59.241 43.478 0.00 0.00 0.00 2.40
2629 3293 3.146066 GCCATAACAACACACCTCAAGA 58.854 45.455 0.00 0.00 0.00 3.02
2630 3294 2.228822 GGCCATAACAACACACCTCAAG 59.771 50.000 0.00 0.00 0.00 3.02
2631 3295 2.158534 AGGCCATAACAACACACCTCAA 60.159 45.455 5.01 0.00 0.00 3.02
2632 3296 1.423541 AGGCCATAACAACACACCTCA 59.576 47.619 5.01 0.00 0.00 3.86
2633 3297 2.084546 GAGGCCATAACAACACACCTC 58.915 52.381 5.01 0.00 35.83 3.85
2634 3298 1.705186 AGAGGCCATAACAACACACCT 59.295 47.619 5.01 0.00 0.00 4.00
2635 3299 2.200373 AGAGGCCATAACAACACACC 57.800 50.000 5.01 0.00 0.00 4.16
2636 3300 5.186198 AGATAAGAGGCCATAACAACACAC 58.814 41.667 5.01 0.00 0.00 3.82
2637 3301 5.435686 AGATAAGAGGCCATAACAACACA 57.564 39.130 5.01 0.00 0.00 3.72
2638 3302 5.880332 TCAAGATAAGAGGCCATAACAACAC 59.120 40.000 5.01 0.00 0.00 3.32
2639 3303 6.061022 TCAAGATAAGAGGCCATAACAACA 57.939 37.500 5.01 0.00 0.00 3.33
2640 3304 5.529060 CCTCAAGATAAGAGGCCATAACAAC 59.471 44.000 5.01 0.00 45.51 3.32
2641 3305 5.684704 CCTCAAGATAAGAGGCCATAACAA 58.315 41.667 5.01 0.00 45.51 2.83
2642 3306 5.296151 CCTCAAGATAAGAGGCCATAACA 57.704 43.478 5.01 0.00 45.51 2.41
2651 3315 7.065085 CCATAACAACACACCTCAAGATAAGAG 59.935 40.741 0.00 0.00 0.00 2.85
2652 3316 6.878923 CCATAACAACACACCTCAAGATAAGA 59.121 38.462 0.00 0.00 0.00 2.10
2653 3317 6.403636 GCCATAACAACACACCTCAAGATAAG 60.404 42.308 0.00 0.00 0.00 1.73
2654 3318 5.414454 GCCATAACAACACACCTCAAGATAA 59.586 40.000 0.00 0.00 0.00 1.75
2655 3319 4.941263 GCCATAACAACACACCTCAAGATA 59.059 41.667 0.00 0.00 0.00 1.98
2656 3320 3.758554 GCCATAACAACACACCTCAAGAT 59.241 43.478 0.00 0.00 0.00 2.40
2657 3321 3.146066 GCCATAACAACACACCTCAAGA 58.854 45.455 0.00 0.00 0.00 3.02
2658 3322 2.228822 GGCCATAACAACACACCTCAAG 59.771 50.000 0.00 0.00 0.00 3.02
2659 3323 2.158534 AGGCCATAACAACACACCTCAA 60.159 45.455 5.01 0.00 0.00 3.02
2660 3324 1.423541 AGGCCATAACAACACACCTCA 59.576 47.619 5.01 0.00 0.00 3.86
2661 3325 2.084546 GAGGCCATAACAACACACCTC 58.915 52.381 5.01 0.00 35.83 3.85
2662 3326 1.705186 AGAGGCCATAACAACACACCT 59.295 47.619 5.01 0.00 0.00 4.00
2663 3327 2.200373 AGAGGCCATAACAACACACC 57.800 50.000 5.01 0.00 0.00 4.16
2664 3328 5.186198 AGATAAGAGGCCATAACAACACAC 58.814 41.667 5.01 0.00 0.00 3.82
2665 3329 5.435686 AGATAAGAGGCCATAACAACACA 57.564 39.130 5.01 0.00 0.00 3.72
2666 3330 5.880332 TCAAGATAAGAGGCCATAACAACAC 59.120 40.000 5.01 0.00 0.00 3.32
2667 3331 6.061022 TCAAGATAAGAGGCCATAACAACA 57.939 37.500 5.01 0.00 0.00 3.33
2668 3332 5.529060 CCTCAAGATAAGAGGCCATAACAAC 59.471 44.000 5.01 0.00 45.51 3.32
2669 3333 5.684704 CCTCAAGATAAGAGGCCATAACAA 58.315 41.667 5.01 0.00 45.51 2.83
2670 3334 5.296151 CCTCAAGATAAGAGGCCATAACA 57.704 43.478 5.01 0.00 45.51 2.41
2679 3343 7.065085 CCATAACAACACACCTCAAGATAAGAG 59.935 40.741 0.00 0.00 0.00 2.85
2680 3344 6.878923 CCATAACAACACACCTCAAGATAAGA 59.121 38.462 0.00 0.00 0.00 2.10
2681 3345 6.403636 GCCATAACAACACACCTCAAGATAAG 60.404 42.308 0.00 0.00 0.00 1.73
2729 3393 6.142480 CACAACTTCAGTCTGTACTTTACTCG 59.858 42.308 0.00 0.00 31.97 4.18
2761 3425 6.669125 TGAAAATCAAAACCATGACATCCT 57.331 33.333 0.00 0.00 30.82 3.24
2764 3428 6.101332 CGGATGAAAATCAAAACCATGACAT 58.899 36.000 0.00 0.00 30.82 3.06
2823 3508 0.555769 TTCCAGGTGGCAAACTCCTT 59.444 50.000 0.00 0.00 41.02 3.36
2887 3578 3.433343 TGCAAACCCTGATTGTGATGAT 58.567 40.909 0.00 0.00 0.00 2.45
2917 3631 7.962995 AGAGGTATCACTGTCAATCTTAGAA 57.037 36.000 0.00 0.00 0.00 2.10
2931 3645 6.153680 CAGGTAATCAGGGATAGAGGTATCAC 59.846 46.154 0.00 0.00 39.15 3.06
2961 3675 2.711547 AGCAGAAACACTAGGGGTCTTT 59.288 45.455 0.00 0.00 0.00 2.52
3064 4151 1.705873 ATAGTAACCCGCTCCCAGAG 58.294 55.000 0.00 0.00 0.00 3.35
3083 4170 9.367160 AGGAAGATGGTCAAGAAGAATTTAAAA 57.633 29.630 0.00 0.00 0.00 1.52
3097 4199 4.163441 TCACACAAAAGGAAGATGGTCA 57.837 40.909 0.00 0.00 0.00 4.02
3135 4237 6.466097 GCTAATGAATGAGTAAACAAACGAGC 59.534 38.462 0.00 0.00 0.00 5.03
3249 4519 5.334028 GCAAAGCAATATTGGTGGAACAAAC 60.334 40.000 20.22 2.28 44.16 2.93
3371 4641 0.558445 CGAATTTCCGTACGACGACG 59.442 55.000 18.76 5.58 46.05 5.12
3374 4644 0.558445 CGACGAATTTCCGTACGACG 59.442 55.000 18.76 13.68 43.49 5.12
3383 4653 9.355215 AGGAATGATATACATACGACGAATTTC 57.645 33.333 0.00 0.00 38.38 2.17
3389 4659 6.861572 ACAACAGGAATGATATACATACGACG 59.138 38.462 0.00 0.00 38.38 5.12
3464 4734 9.449719 CTCTCCTTTTATCTTTAGTGCCTTTAA 57.550 33.333 0.00 0.00 0.00 1.52
3465 4735 8.822805 TCTCTCCTTTTATCTTTAGTGCCTTTA 58.177 33.333 0.00 0.00 0.00 1.85
3466 4736 7.690256 TCTCTCCTTTTATCTTTAGTGCCTTT 58.310 34.615 0.00 0.00 0.00 3.11
3467 4737 7.259088 TCTCTCCTTTTATCTTTAGTGCCTT 57.741 36.000 0.00 0.00 0.00 4.35
3485 4755 7.815549 TGTTTAAAACCTTGTTTGTTTCTCTCC 59.184 33.333 0.00 0.00 34.97 3.71
3568 4838 4.919754 GCATCAGAACCTCATTGTTCAAAC 59.080 41.667 6.67 0.00 45.62 2.93
3605 4875 3.648067 TGCTTAAGTATAGAGGCTGGCAT 59.352 43.478 4.02 0.00 0.00 4.40
3727 5107 2.187707 CGCATCCATAAAGCTGCAAAC 58.812 47.619 1.02 0.00 34.29 2.93
3745 5126 2.343426 CCCCAAAAGGAAGGAGCGC 61.343 63.158 0.00 0.00 38.24 5.92
3762 5143 0.824759 AGGTATCGCTGACAAGTCCC 59.175 55.000 0.00 0.00 0.00 4.46
3947 5328 5.527214 TCAAATCCATTGTTAGCACCTATCG 59.473 40.000 0.00 0.00 40.11 2.92
4014 5395 7.978975 ACGGCATATGCAACAATTATTTTACTT 59.021 29.630 28.07 0.00 44.36 2.24
4015 5396 7.488322 ACGGCATATGCAACAATTATTTTACT 58.512 30.769 28.07 0.00 44.36 2.24
4016 5397 7.357206 CGACGGCATATGCAACAATTATTTTAC 60.357 37.037 28.07 5.49 44.36 2.01
4017 5398 6.634837 CGACGGCATATGCAACAATTATTTTA 59.365 34.615 28.07 0.00 44.36 1.52
4018 5399 5.458452 CGACGGCATATGCAACAATTATTTT 59.542 36.000 28.07 0.00 44.36 1.82
4028 5414 1.807142 TCAAAACGACGGCATATGCAA 59.193 42.857 28.07 0.00 44.36 4.08
4416 5808 2.888834 TTGAAAACCCAGCTTGAAGC 57.111 45.000 9.59 9.59 42.84 3.86
4457 5867 4.985538 ACAGTATGACAGGGTTTCATGTT 58.014 39.130 0.00 0.00 38.09 2.71
4490 5900 0.671796 TGGTGACACGTGATCTTCGT 59.328 50.000 25.01 9.86 42.33 3.85
4518 5928 2.370281 AGTCAGTTGCCACAGATACG 57.630 50.000 0.00 0.00 0.00 3.06
4520 5930 2.371841 ACCAAGTCAGTTGCCACAGATA 59.628 45.455 0.00 0.00 34.45 1.98
4575 5985 3.117589 GCAGCTGGCAGAATTTGTG 57.882 52.632 20.86 5.91 43.97 3.33
4639 6058 2.424956 GCGGAGGCTTCAGATTCAAATT 59.575 45.455 0.00 0.00 35.83 1.82
4730 6149 0.327259 TCCAGAAGCTGCTGAATGCT 59.673 50.000 24.34 0.00 43.37 3.79
5073 6492 5.598830 AGTCTTTCCTCTGTAACTTGAGTCA 59.401 40.000 0.00 0.00 0.00 3.41
5304 6723 2.738846 CTCTTCCATTCCAACAGACACG 59.261 50.000 0.00 0.00 0.00 4.49
5317 6736 4.846940 AGTGAAAGTAAGACCCTCTTCCAT 59.153 41.667 0.00 0.00 37.89 3.41
5410 6829 0.035820 TTATCACCGTGGCCTTCACC 60.036 55.000 3.32 0.00 43.23 4.02
5457 6888 4.901868 ACAAAGATGCATGAATTTTGGCT 58.098 34.783 2.46 0.00 34.07 4.75
5542 6973 2.749076 TGGAAATGCTCGGTGATTCTTG 59.251 45.455 0.00 0.00 0.00 3.02
5679 7113 0.396060 GGCTGTCCATGGATCTCTCC 59.604 60.000 19.62 11.24 42.45 3.71
5766 7200 2.038952 TGTATTGCTCAACTCCTGCAGT 59.961 45.455 13.81 0.00 38.01 4.40
6037 7474 7.568738 TCACCATTCTAGAATTATTCTGGAGGA 59.431 37.037 23.46 16.31 46.03 3.71
6156 7593 4.891168 TGAAGGCAATGCATCATCAACTAT 59.109 37.500 7.79 0.00 0.00 2.12
6201 7638 5.508825 GGCAAATCCACAAGTGTTACAATCA 60.509 40.000 0.00 0.00 34.01 2.57
6367 8088 4.517285 TGGCCAAACTCTTAGATGCTAAG 58.483 43.478 0.61 7.68 0.00 2.18
6421 8142 4.484912 TGTTGGCCCACTAACCTTAAAAT 58.515 39.130 8.65 0.00 0.00 1.82
6424 8145 3.818295 ATGTTGGCCCACTAACCTTAA 57.182 42.857 8.65 0.00 0.00 1.85
6437 8158 7.512297 CAACACTGAAAATATGAAATGTTGGC 58.488 34.615 5.99 0.00 41.11 4.52
6447 8168 7.361116 GGCAAAATTCCCAACACTGAAAATATG 60.361 37.037 0.00 0.00 0.00 1.78
6470 8191 4.082300 CACCATAAGCATAACAAGTTGGCA 60.082 41.667 7.96 0.00 0.00 4.92
6580 8301 6.758416 TGCTTGCTAATTAGAGTGTACAGATG 59.242 38.462 16.85 0.51 0.00 2.90
6683 8404 4.507710 TGATCAGTCTGGAGTTTGTATGC 58.492 43.478 0.00 0.00 0.00 3.14
6781 8502 4.737054 CATTCTCCAATTGTGGTTGTAGC 58.263 43.478 4.43 0.00 46.11 3.58
6828 8549 3.005684 GGCTGTGTTGATTGGTTGATGAA 59.994 43.478 0.00 0.00 0.00 2.57
6848 8569 2.706636 TCTGCAACAACAGACAGGC 58.293 52.632 0.00 0.00 41.72 4.85
7006 8727 3.610040 AGCGATGTTGGAGATGTTGTA 57.390 42.857 0.00 0.00 0.00 2.41
7053 8774 0.749649 CCTCTTCCATGTCCTCCTCG 59.250 60.000 0.00 0.00 0.00 4.63
7429 9153 2.553602 AGCGCTCAATGTTCATTTGTCA 59.446 40.909 2.64 0.00 0.00 3.58
7437 9161 0.874390 TTCACCAGCGCTCAATGTTC 59.126 50.000 7.13 0.00 0.00 3.18
7464 9188 0.696501 AGTTTCGCCCTACCATGGTT 59.303 50.000 25.38 7.42 0.00 3.67
7465 9189 0.035439 CAGTTTCGCCCTACCATGGT 60.035 55.000 23.55 23.55 0.00 3.55
7466 9190 1.376609 GCAGTTTCGCCCTACCATGG 61.377 60.000 11.19 11.19 0.00 3.66
7467 9191 0.676466 TGCAGTTTCGCCCTACCATG 60.676 55.000 0.00 0.00 0.00 3.66
7468 9192 0.255890 ATGCAGTTTCGCCCTACCAT 59.744 50.000 0.00 0.00 0.00 3.55
7469 9193 0.392461 GATGCAGTTTCGCCCTACCA 60.392 55.000 0.00 0.00 0.00 3.25
7470 9194 1.095807 GGATGCAGTTTCGCCCTACC 61.096 60.000 0.00 0.00 0.00 3.18
7471 9195 1.429148 CGGATGCAGTTTCGCCCTAC 61.429 60.000 0.00 0.00 0.00 3.18
7472 9196 1.153449 CGGATGCAGTTTCGCCCTA 60.153 57.895 0.00 0.00 0.00 3.53
7473 9197 2.436646 CGGATGCAGTTTCGCCCT 60.437 61.111 0.00 0.00 0.00 5.19
7474 9198 2.746277 ACGGATGCAGTTTCGCCC 60.746 61.111 0.00 0.00 0.00 6.13
7475 9199 2.480555 CACGGATGCAGTTTCGCC 59.519 61.111 0.00 0.00 0.00 5.54
7476 9200 1.852067 AACCACGGATGCAGTTTCGC 61.852 55.000 0.00 0.00 0.00 4.70
7477 9201 0.110238 CAACCACGGATGCAGTTTCG 60.110 55.000 0.00 0.00 0.00 3.46
7478 9202 0.240945 CCAACCACGGATGCAGTTTC 59.759 55.000 0.00 0.00 0.00 2.78
7479 9203 1.178534 CCCAACCACGGATGCAGTTT 61.179 55.000 0.00 0.00 0.00 2.66
7480 9204 1.603455 CCCAACCACGGATGCAGTT 60.603 57.895 0.00 0.00 0.00 3.16
7481 9205 2.034066 CCCAACCACGGATGCAGT 59.966 61.111 0.00 0.00 0.00 4.40
7482 9206 2.751436 CCCCAACCACGGATGCAG 60.751 66.667 0.00 0.00 0.00 4.41
7483 9207 4.358841 CCCCCAACCACGGATGCA 62.359 66.667 0.00 0.00 0.00 3.96
7484 9208 3.577334 TTCCCCCAACCACGGATGC 62.577 63.158 0.00 0.00 0.00 3.91
7485 9209 0.540830 TTTTCCCCCAACCACGGATG 60.541 55.000 0.00 0.00 0.00 3.51
7486 9210 0.411848 ATTTTCCCCCAACCACGGAT 59.588 50.000 0.00 0.00 0.00 4.18
7487 9211 0.188834 AATTTTCCCCCAACCACGGA 59.811 50.000 0.00 0.00 0.00 4.69
7488 9212 0.606096 GAATTTTCCCCCAACCACGG 59.394 55.000 0.00 0.00 0.00 4.94
7489 9213 1.627864 AGAATTTTCCCCCAACCACG 58.372 50.000 0.00 0.00 0.00 4.94
7490 9214 3.774734 ACTAGAATTTTCCCCCAACCAC 58.225 45.455 0.00 0.00 0.00 4.16
7491 9215 4.140900 TGAACTAGAATTTTCCCCCAACCA 60.141 41.667 0.00 0.00 0.00 3.67
7492 9216 4.412843 TGAACTAGAATTTTCCCCCAACC 58.587 43.478 0.00 0.00 0.00 3.77
7493 9217 5.303333 TGTTGAACTAGAATTTTCCCCCAAC 59.697 40.000 0.00 0.00 0.00 3.77
7494 9218 5.303333 GTGTTGAACTAGAATTTTCCCCCAA 59.697 40.000 0.00 0.00 0.00 4.12
7495 9219 4.830600 GTGTTGAACTAGAATTTTCCCCCA 59.169 41.667 0.00 0.00 0.00 4.96
7496 9220 4.082949 CGTGTTGAACTAGAATTTTCCCCC 60.083 45.833 0.00 0.00 0.00 5.40
7497 9221 4.615223 GCGTGTTGAACTAGAATTTTCCCC 60.615 45.833 0.00 0.00 0.00 4.81
7498 9222 4.023536 TGCGTGTTGAACTAGAATTTTCCC 60.024 41.667 0.00 0.00 0.00 3.97
7499 9223 5.049680 TCTGCGTGTTGAACTAGAATTTTCC 60.050 40.000 0.00 0.00 0.00 3.13
7500 9224 5.985781 TCTGCGTGTTGAACTAGAATTTTC 58.014 37.500 0.00 0.00 0.00 2.29
7501 9225 6.371809 TTCTGCGTGTTGAACTAGAATTTT 57.628 33.333 0.00 0.00 29.75 1.82
7502 9226 6.371809 TTTCTGCGTGTTGAACTAGAATTT 57.628 33.333 0.00 0.00 32.84 1.82
7503 9227 5.049405 CCTTTCTGCGTGTTGAACTAGAATT 60.049 40.000 0.00 0.00 32.84 2.17
7504 9228 4.452455 CCTTTCTGCGTGTTGAACTAGAAT 59.548 41.667 0.00 0.00 32.84 2.40
7505 9229 3.807622 CCTTTCTGCGTGTTGAACTAGAA 59.192 43.478 0.00 0.00 31.64 2.10
7506 9230 3.069016 TCCTTTCTGCGTGTTGAACTAGA 59.931 43.478 0.00 0.00 0.00 2.43
7507 9231 3.390135 TCCTTTCTGCGTGTTGAACTAG 58.610 45.455 0.00 0.00 0.00 2.57
7508 9232 3.462483 TCCTTTCTGCGTGTTGAACTA 57.538 42.857 0.00 0.00 0.00 2.24
7509 9233 2.325583 TCCTTTCTGCGTGTTGAACT 57.674 45.000 0.00 0.00 0.00 3.01
7510 9234 2.096819 TGTTCCTTTCTGCGTGTTGAAC 59.903 45.455 0.00 0.00 33.15 3.18
7511 9235 2.360844 TGTTCCTTTCTGCGTGTTGAA 58.639 42.857 0.00 0.00 0.00 2.69
7512 9236 2.031258 TGTTCCTTTCTGCGTGTTGA 57.969 45.000 0.00 0.00 0.00 3.18
7513 9237 2.159448 TGTTGTTCCTTTCTGCGTGTTG 60.159 45.455 0.00 0.00 0.00 3.33
7514 9238 2.088423 TGTTGTTCCTTTCTGCGTGTT 58.912 42.857 0.00 0.00 0.00 3.32
7515 9239 1.745232 TGTTGTTCCTTTCTGCGTGT 58.255 45.000 0.00 0.00 0.00 4.49
7516 9240 3.354089 AATGTTGTTCCTTTCTGCGTG 57.646 42.857 0.00 0.00 0.00 5.34
7517 9241 3.880490 TGTAATGTTGTTCCTTTCTGCGT 59.120 39.130 0.00 0.00 0.00 5.24
7518 9242 4.213270 TCTGTAATGTTGTTCCTTTCTGCG 59.787 41.667 0.00 0.00 0.00 5.18
7519 9243 5.008613 TGTCTGTAATGTTGTTCCTTTCTGC 59.991 40.000 0.00 0.00 0.00 4.26
7520 9244 6.430451 GTGTCTGTAATGTTGTTCCTTTCTG 58.570 40.000 0.00 0.00 0.00 3.02
7521 9245 5.236478 CGTGTCTGTAATGTTGTTCCTTTCT 59.764 40.000 0.00 0.00 0.00 2.52
7522 9246 5.007332 ACGTGTCTGTAATGTTGTTCCTTTC 59.993 40.000 0.00 0.00 0.00 2.62
7523 9247 4.879545 ACGTGTCTGTAATGTTGTTCCTTT 59.120 37.500 0.00 0.00 0.00 3.11
7524 9248 4.448210 ACGTGTCTGTAATGTTGTTCCTT 58.552 39.130 0.00 0.00 0.00 3.36
7525 9249 4.067972 ACGTGTCTGTAATGTTGTTCCT 57.932 40.909 0.00 0.00 0.00 3.36
7526 9250 4.806342 AACGTGTCTGTAATGTTGTTCC 57.194 40.909 0.00 0.00 0.00 3.62
7527 9251 7.349711 ACATAAACGTGTCTGTAATGTTGTTC 58.650 34.615 0.00 0.00 29.28 3.18
7528 9252 7.254227 ACATAAACGTGTCTGTAATGTTGTT 57.746 32.000 0.00 0.00 29.28 2.83
7529 9253 6.854496 ACATAAACGTGTCTGTAATGTTGT 57.146 33.333 0.00 0.00 29.28 3.32
7530 9254 6.953743 GCTACATAAACGTGTCTGTAATGTTG 59.046 38.462 5.58 1.59 33.32 3.33
7531 9255 6.647481 TGCTACATAAACGTGTCTGTAATGTT 59.353 34.615 5.58 0.00 33.32 2.71
7532 9256 6.160684 TGCTACATAAACGTGTCTGTAATGT 58.839 36.000 5.58 1.53 34.69 2.71
7533 9257 6.641176 TGCTACATAAACGTGTCTGTAATG 57.359 37.500 5.58 0.00 33.62 1.90
7534 9258 8.936070 TTATGCTACATAAACGTGTCTGTAAT 57.064 30.769 5.58 0.94 33.62 1.89
7535 9259 8.936070 ATTATGCTACATAAACGTGTCTGTAA 57.064 30.769 5.58 0.00 33.62 2.41
7536 9260 8.936070 AATTATGCTACATAAACGTGTCTGTA 57.064 30.769 4.14 4.14 33.62 2.74
7537 9261 7.843490 AATTATGCTACATAAACGTGTCTGT 57.157 32.000 2.04 2.04 33.62 3.41
7636 9597 0.700564 ATGGCAGGTGGAACAGACAT 59.299 50.000 0.00 0.00 41.80 3.06
7637 9598 0.250858 CATGGCAGGTGGAACAGACA 60.251 55.000 0.00 0.00 41.80 3.41
7640 9601 0.325933 TCTCATGGCAGGTGGAACAG 59.674 55.000 0.00 0.00 41.80 3.16
7658 9619 5.819901 AGTTCATGAGTTAGCAGCCTATTTC 59.180 40.000 0.00 0.00 0.00 2.17
7765 9763 0.248784 GTATCGCGGCGAGGTACTTT 60.249 55.000 29.64 13.98 41.55 2.66
7802 9800 0.611200 CGTACCTTCACCACCATGGA 59.389 55.000 21.47 0.00 40.96 3.41
7832 9830 1.682854 CAGGTGTTTGTGATGTGGCTT 59.317 47.619 0.00 0.00 0.00 4.35
7967 9965 1.811679 GGTGCTCAAGCTCTACGGC 60.812 63.158 3.32 0.00 42.66 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.