Multiple sequence alignment - TraesCS4A01G181100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G181100 chr4A 100.000 4782 0 0 1 4782 455279019 455283800 0.000000e+00 8831
1 TraesCS4A01G181100 chr4D 96.559 4069 100 13 382 4437 118315270 118311229 0.000000e+00 6702
2 TraesCS4A01G181100 chr4D 91.471 340 22 4 4445 4782 118311032 118310698 1.210000e-125 460
3 TraesCS4A01G181100 chr4D 88.684 380 36 3 13 392 118323086 118322714 1.570000e-124 457
4 TraesCS4A01G181100 chr4B 95.924 3999 123 12 1 3989 180548712 180544744 0.000000e+00 6445
5 TraesCS4A01G181100 chr4B 96.040 404 12 4 4252 4654 180544029 180543629 0.000000e+00 654
6 TraesCS4A01G181100 chr4B 90.775 271 19 3 3990 4260 180544663 180544399 1.640000e-94 357
7 TraesCS4A01G181100 chr4B 95.902 122 4 1 4662 4782 180543593 180543472 3.780000e-46 196
8 TraesCS4A01G181100 chr5A 86.471 170 12 5 4493 4655 557321228 557321063 4.920000e-40 176
9 TraesCS4A01G181100 chr5A 87.850 107 8 2 4678 4782 557320999 557320896 2.340000e-23 121
10 TraesCS4A01G181100 chr1A 85.714 140 11 7 4493 4624 551609965 551610103 6.450000e-29 139
11 TraesCS4A01G181100 chr1D 84.892 139 14 6 4493 4624 459894927 459895065 3.000000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G181100 chr4A 455279019 455283800 4781 False 8831 8831 100.00000 1 4782 1 chr4A.!!$F1 4781
1 TraesCS4A01G181100 chr4D 118310698 118315270 4572 True 3581 6702 94.01500 382 4782 2 chr4D.!!$R2 4400
2 TraesCS4A01G181100 chr4B 180543472 180548712 5240 True 1913 6445 94.66025 1 4782 4 chr4B.!!$R1 4781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 126 0.400213 TGGACCACCCTTCATGTGTC 59.600 55.000 0.00 0.0 35.38 3.67 F
760 768 0.769873 CTGGCCTGAGCTGGGAATAT 59.230 55.000 3.32 0.0 39.73 1.28 F
974 983 1.640917 GGAGGACTCCCACAACTGTA 58.359 55.000 7.13 0.0 43.94 2.74 F
1335 1344 3.243168 CGGAATTCACACAATATGCAGGG 60.243 47.826 7.93 0.0 0.00 4.45 F
1936 1945 1.600058 TGGCTGGAGAGATTTCCCAT 58.400 50.000 0.00 0.0 36.35 4.00 F
2036 2045 2.609747 TCTAACAACAGAGCCAGAGGT 58.390 47.619 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1284 1293 1.139439 TCTGGCCTGGCATTGCTATA 58.861 50.000 22.05 0.00 0.00 1.31 R
1769 1778 1.820519 GCATTTGTGGATGAAGGCTGA 59.179 47.619 0.00 0.00 30.58 4.26 R
1936 1945 2.165167 AGAAATCACGGTCTCGGTACA 58.835 47.619 0.00 0.00 41.39 2.90 R
2671 2680 2.745968 TCCTGGGAAATAATTGTGCCC 58.254 47.619 6.48 6.48 39.29 5.36 R
3678 3693 0.877071 CGCTCCTTTGACTGTTGCAT 59.123 50.000 0.00 0.00 0.00 3.96 R
3828 3843 0.974010 TTGGGGTCGGACTTCGCTAT 60.974 55.000 8.23 0.00 39.05 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 124 0.401738 ACTGGACCACCCTTCATGTG 59.598 55.000 0.00 0.00 35.38 3.21
124 125 0.401738 CTGGACCACCCTTCATGTGT 59.598 55.000 0.00 0.00 35.38 3.72
125 126 0.400213 TGGACCACCCTTCATGTGTC 59.600 55.000 0.00 0.00 35.38 3.67
126 127 0.400213 GGACCACCCTTCATGTGTCA 59.600 55.000 0.00 0.00 31.71 3.58
127 128 1.004745 GGACCACCCTTCATGTGTCAT 59.995 52.381 0.00 0.00 31.71 3.06
128 129 2.359900 GACCACCCTTCATGTGTCATC 58.640 52.381 0.00 0.00 31.71 2.92
153 154 1.673033 CCACTTGGTCGACCTCATGAC 60.673 57.143 33.39 7.46 36.82 3.06
206 207 4.800993 CGAAACAGAGCACATAGAAGTAGG 59.199 45.833 0.00 0.00 0.00 3.18
250 251 2.438434 ACTACCAAGCCATGCCGC 60.438 61.111 0.00 0.00 0.00 6.53
251 252 2.438254 CTACCAAGCCATGCCGCA 60.438 61.111 0.00 0.00 0.00 5.69
282 283 1.003545 GTTCGCCATCATCATCGTTGG 60.004 52.381 0.00 0.00 0.00 3.77
287 288 3.720949 CCATCATCATCGTTGGCAAAT 57.279 42.857 0.00 0.00 0.00 2.32
297 298 1.599171 CGTTGGCAAATCAAACGCAGA 60.599 47.619 0.00 0.00 0.00 4.26
313 314 1.089920 CAGAGCAAACGGGATCCAAG 58.910 55.000 15.23 9.56 0.00 3.61
328 329 3.315949 AAGCCAGCGGACCCGTAA 61.316 61.111 10.37 0.00 42.09 3.18
336 337 2.202974 GGACCCGTAATCCGCACC 60.203 66.667 0.00 0.00 34.38 5.01
361 362 1.705997 AAGTGACCGGGAAGCCTTGT 61.706 55.000 6.32 0.00 0.00 3.16
377 378 7.013655 GGAAGCCTTGTCACACATAAATATGAT 59.986 37.037 7.40 0.00 37.15 2.45
419 420 4.256110 TGATGATGACCAGTTGCACTAAG 58.744 43.478 0.00 0.00 0.00 2.18
502 507 7.164230 TGAAACAGCCTTCTTTTTAAACTCA 57.836 32.000 0.00 0.00 0.00 3.41
660 665 5.102313 CAGACATACTCGTGCTATTGTTGA 58.898 41.667 0.00 0.00 0.00 3.18
760 768 0.769873 CTGGCCTGAGCTGGGAATAT 59.230 55.000 3.32 0.00 39.73 1.28
768 776 2.050144 GAGCTGGGAATATGTCCTCCA 58.950 52.381 0.00 0.00 46.92 3.86
874 882 5.419788 ACAACACAAACATAGATGCCATGAT 59.580 36.000 0.00 0.00 0.00 2.45
880 888 7.859377 CACAAACATAGATGCCATGATAAAGAC 59.141 37.037 0.00 0.00 0.00 3.01
881 889 7.557358 ACAAACATAGATGCCATGATAAAGACA 59.443 33.333 0.00 0.00 0.00 3.41
902 910 4.576463 ACAGAATATTAAGCGCCTTTGAGG 59.424 41.667 2.29 0.00 38.80 3.86
974 983 1.640917 GGAGGACTCCCACAACTGTA 58.359 55.000 7.13 0.00 43.94 2.74
1090 1099 8.228905 AGATGAAAAGAGGCCTACTAGTAGTAT 58.771 37.037 24.84 12.49 29.08 2.12
1170 1179 8.877864 AACACCCTATTGAGTTTGATCAATTA 57.122 30.769 9.40 0.00 45.44 1.40
1284 1293 5.559148 ATCAGCGAAAGAGGGATAAGATT 57.441 39.130 0.00 0.00 0.00 2.40
1335 1344 3.243168 CGGAATTCACACAATATGCAGGG 60.243 47.826 7.93 0.00 0.00 4.45
1344 1353 4.080356 ACACAATATGCAGGGTATGTCACT 60.080 41.667 0.00 0.00 0.00 3.41
1544 1553 5.332707 CAGATGTGCACTTGAGAATGAATG 58.667 41.667 19.41 0.00 0.00 2.67
1545 1554 5.123344 CAGATGTGCACTTGAGAATGAATGA 59.877 40.000 19.41 0.00 0.00 2.57
1722 1731 4.729918 CACTCCAGCCCTGCCCAC 62.730 72.222 0.00 0.00 0.00 4.61
1746 1755 8.402472 CACAGTTAATTGTTAACAAAGAGGTCA 58.598 33.333 23.97 0.00 46.11 4.02
1936 1945 1.600058 TGGCTGGAGAGATTTCCCAT 58.400 50.000 0.00 0.00 36.35 4.00
2036 2045 2.609747 TCTAACAACAGAGCCAGAGGT 58.390 47.619 0.00 0.00 0.00 3.85
2074 2083 4.537015 CTTAAAGGTGTTGCTGTAAGTGC 58.463 43.478 0.00 0.00 35.30 4.40
2128 2137 8.387190 TGCCAGTAAGATTCTAATCAATGATG 57.613 34.615 0.00 0.00 37.89 3.07
2136 2145 6.935771 AGATTCTAATCAATGATGCCACTCTC 59.064 38.462 0.00 0.00 37.89 3.20
2536 2545 4.032960 TCCCTGCACAAATCACTATGTT 57.967 40.909 0.00 0.00 0.00 2.71
2654 2663 6.374588 TGGAATACCCAAGTAGGTTTCAAAA 58.625 36.000 0.00 0.00 43.29 2.44
2958 2967 5.149976 ACAATAAAGAGGGCATAATGGCAT 58.850 37.500 0.00 0.00 45.76 4.40
2959 2968 6.314120 ACAATAAAGAGGGCATAATGGCATA 58.686 36.000 0.00 0.00 45.76 3.14
2960 2969 6.955851 ACAATAAAGAGGGCATAATGGCATAT 59.044 34.615 0.00 0.00 45.76 1.78
2961 2970 7.123247 ACAATAAAGAGGGCATAATGGCATATC 59.877 37.037 0.00 0.00 45.76 1.63
2962 2971 4.942363 AAGAGGGCATAATGGCATATCT 57.058 40.909 0.00 0.00 45.76 1.98
2963 2972 4.500499 AGAGGGCATAATGGCATATCTC 57.500 45.455 0.00 2.39 45.76 2.75
2964 2973 3.201708 AGAGGGCATAATGGCATATCTCC 59.798 47.826 0.00 0.14 45.76 3.71
2965 2974 2.921612 AGGGCATAATGGCATATCTCCA 59.078 45.455 0.00 0.00 45.76 3.86
2978 2987 7.392418 TGGCATATCTCCATAAGATTCTTCAG 58.608 38.462 1.27 0.00 42.30 3.02
3118 3127 9.067986 AGGAATATCAAGGAAAATTCGATAACC 57.932 33.333 0.00 0.00 30.67 2.85
3220 3229 4.766375 TCGATAACTGGAAAGATTCACCC 58.234 43.478 0.00 0.00 0.00 4.61
3678 3693 1.202769 GGGTACAAGGGCCTGGTGTA 61.203 60.000 24.34 18.15 0.00 2.90
3715 3730 4.539235 GGGCACATGGTCCCTTTT 57.461 55.556 15.12 0.00 39.46 2.27
3828 3843 6.976349 AGCACATATCTATTGTAAAACGTCGA 59.024 34.615 0.00 0.00 0.00 4.20
3869 3884 1.398692 AGTCGCATCCCTTCTCTCTC 58.601 55.000 0.00 0.00 0.00 3.20
3870 3885 1.064017 AGTCGCATCCCTTCTCTCTCT 60.064 52.381 0.00 0.00 0.00 3.10
3948 3965 7.395190 TCCTTTGTATCAGTGAAATCAATGG 57.605 36.000 20.89 20.89 41.72 3.16
3985 4002 5.468746 CACTTCCTTCCAATCTCGTTTTACA 59.531 40.000 0.00 0.00 0.00 2.41
4035 4132 5.762045 CTCAAAAAGCCATTCCGGTATATG 58.238 41.667 0.00 4.17 36.97 1.78
4203 4301 4.045783 GCGGAAAGACATCTTCTAGTAGC 58.954 47.826 0.00 0.00 34.61 3.58
4204 4302 4.612943 CGGAAAGACATCTTCTAGTAGCC 58.387 47.826 0.00 0.00 34.61 3.93
4218 4316 3.965026 TAGCCAGGCAGCTCTCCGT 62.965 63.158 15.80 0.00 43.67 4.69
4222 4320 1.739562 CAGGCAGCTCTCCGTTCAC 60.740 63.158 0.00 0.00 0.00 3.18
4285 4761 0.606096 TGGTCTTCTTCATCGGCGAA 59.394 50.000 15.93 0.00 0.00 4.70
4438 4915 9.435688 GCTCCAGTAATGGAAATGTTTTTAATT 57.564 29.630 13.78 0.00 37.55 1.40
4440 4917 9.717942 TCCAGTAATGGAAATGTTTTTAATTGG 57.282 29.630 10.01 0.00 34.56 3.16
4441 4918 9.717942 CCAGTAATGGAAATGTTTTTAATTGGA 57.282 29.630 2.11 0.00 0.00 3.53
4489 5155 3.076278 TAGCCCCGTTACCCCACG 61.076 66.667 0.00 0.00 40.02 4.94
4498 5164 1.260544 GTTACCCCACGGACAGTAGT 58.739 55.000 0.00 0.00 0.00 2.73
4504 5170 1.964448 CACGGACAGTAGTGGAGCA 59.036 57.895 1.92 0.00 34.93 4.26
4680 5376 4.803426 CAGAGGACGCGTGGGAGC 62.803 72.222 20.70 0.00 0.00 4.70
4743 5439 7.757173 CCTTGCACATAGCTACATATACTACAG 59.243 40.741 0.00 0.00 45.94 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 1.499007 ACATGAAGGGTGGTCCAGTTT 59.501 47.619 0.00 0.00 38.24 2.66
144 145 2.304180 CAGAACTTCCCTGTCATGAGGT 59.696 50.000 0.00 0.00 0.00 3.85
153 154 4.911390 ACCATTAACTCAGAACTTCCCTG 58.089 43.478 0.00 0.00 0.00 4.45
206 207 1.566018 CTTGCTTGTCCGTCGGTTCC 61.566 60.000 11.88 1.31 0.00 3.62
212 213 1.069636 CAGCTTTCTTGCTTGTCCGTC 60.070 52.381 0.00 0.00 41.98 4.79
251 252 1.104577 ATGGCGAACAACGTTGGGTT 61.105 50.000 30.34 17.56 44.60 4.11
262 263 1.003545 CCAACGATGATGATGGCGAAC 60.004 52.381 0.00 0.00 0.00 3.95
263 264 1.298602 CCAACGATGATGATGGCGAA 58.701 50.000 0.00 0.00 0.00 4.70
282 283 1.769733 TTGCTCTGCGTTTGATTTGC 58.230 45.000 0.00 0.00 0.00 3.68
287 288 1.646540 CCGTTTGCTCTGCGTTTGA 59.353 52.632 0.00 0.00 0.00 2.69
297 298 1.678970 GGCTTGGATCCCGTTTGCT 60.679 57.895 9.90 0.00 0.00 3.91
313 314 2.588034 GATTACGGGTCCGCTGGC 60.588 66.667 9.55 0.00 44.19 4.85
328 329 1.880027 GTCACTTTTCTTGGTGCGGAT 59.120 47.619 0.00 0.00 33.91 4.18
336 337 1.266989 GCTTCCCGGTCACTTTTCTTG 59.733 52.381 0.00 0.00 0.00 3.02
419 420 3.548770 TCTCATGTCATCCAATTCTGGC 58.451 45.455 0.00 0.00 43.17 4.85
502 507 4.158949 GTGTATTCCGGCCCAACTAAAATT 59.841 41.667 0.00 0.00 0.00 1.82
760 768 1.211212 CAGCATGATTCCTGGAGGACA 59.789 52.381 0.00 0.00 41.38 4.02
874 882 7.551262 TCAAAGGCGCTTAATATTCTGTCTTTA 59.449 33.333 7.64 0.00 0.00 1.85
880 888 4.023707 CCCTCAAAGGCGCTTAATATTCTG 60.024 45.833 7.64 0.00 32.73 3.02
881 889 4.137543 CCCTCAAAGGCGCTTAATATTCT 58.862 43.478 7.64 0.00 32.73 2.40
974 983 1.238439 CGGGACATTCTGTTTGCAGT 58.762 50.000 0.00 0.00 43.05 4.40
1090 1099 2.091885 AGAGGCAGAACAAGGACCAAAA 60.092 45.455 0.00 0.00 0.00 2.44
1170 1179 7.449704 GCTGGAACATATTTCCTGGATATTTCT 59.550 37.037 4.94 0.00 38.20 2.52
1284 1293 1.139439 TCTGGCCTGGCATTGCTATA 58.861 50.000 22.05 0.00 0.00 1.31
1335 1344 4.665212 CATTTGCATCCACAGTGACATAC 58.335 43.478 0.62 0.00 0.00 2.39
1344 1353 1.546923 CTTCCAGCATTTGCATCCACA 59.453 47.619 5.20 0.00 45.16 4.17
1538 1547 8.859090 TCAAAGAAGGTTTGTAACATCATTCAT 58.141 29.630 0.00 0.00 0.00 2.57
1544 1553 7.931275 AGTTCTCAAAGAAGGTTTGTAACATC 58.069 34.615 14.75 0.00 34.42 3.06
1545 1554 7.881775 AGTTCTCAAAGAAGGTTTGTAACAT 57.118 32.000 14.75 0.00 34.42 2.71
1722 1731 8.402472 TGTGACCTCTTTGTTAACAATTAACTG 58.598 33.333 21.17 10.65 44.46 3.16
1769 1778 1.820519 GCATTTGTGGATGAAGGCTGA 59.179 47.619 0.00 0.00 30.58 4.26
1773 1782 3.181493 GCTACTGCATTTGTGGATGAAGG 60.181 47.826 0.00 0.00 37.06 3.46
1936 1945 2.165167 AGAAATCACGGTCTCGGTACA 58.835 47.619 0.00 0.00 41.39 2.90
2128 2137 3.149196 TCTGACCAAATTTGAGAGTGGC 58.851 45.455 19.86 5.05 34.27 5.01
2136 2145 3.244976 GTTGCCGATCTGACCAAATTTG 58.755 45.455 11.40 11.40 0.00 2.32
2536 2545 7.287927 ACCTCAGGACGATTTAGATAAGATGAA 59.712 37.037 0.00 0.00 0.00 2.57
2671 2680 2.745968 TCCTGGGAAATAATTGTGCCC 58.254 47.619 6.48 6.48 39.29 5.36
2877 2886 7.044181 CACAGAGTCTTAATCTTTGATGGCTA 58.956 38.462 0.00 0.00 27.94 3.93
2912 2921 7.215789 TGTTCACTTTTTAATACCTACCGTGA 58.784 34.615 0.00 0.00 0.00 4.35
2958 2967 8.907829 ATAGGCTGAAGAATCTTATGGAGATA 57.092 34.615 0.00 0.00 44.41 1.98
2960 2969 7.730332 TGTATAGGCTGAAGAATCTTATGGAGA 59.270 37.037 0.00 0.00 39.13 3.71
2961 2970 7.901029 TGTATAGGCTGAAGAATCTTATGGAG 58.099 38.462 0.00 0.00 0.00 3.86
2962 2971 7.730332 TCTGTATAGGCTGAAGAATCTTATGGA 59.270 37.037 0.00 0.00 0.00 3.41
2963 2972 7.816995 GTCTGTATAGGCTGAAGAATCTTATGG 59.183 40.741 0.00 0.00 0.00 2.74
2964 2973 8.584157 AGTCTGTATAGGCTGAAGAATCTTATG 58.416 37.037 0.00 0.00 37.52 1.90
2965 2974 8.719645 AGTCTGTATAGGCTGAAGAATCTTAT 57.280 34.615 0.00 0.00 37.52 1.73
2978 2987 7.711339 ACAAGCAAAAGTATAGTCTGTATAGGC 59.289 37.037 0.00 0.00 0.00 3.93
3118 3127 6.961554 GTCTAATACAAGTTGATTGCTTTCCG 59.038 38.462 10.54 0.00 43.15 4.30
3220 3229 2.887568 GATGGCAGCACGGTCTCG 60.888 66.667 0.00 0.00 43.02 4.04
3646 3661 1.363246 TGTACCCAACCACATAGCCA 58.637 50.000 0.00 0.00 0.00 4.75
3678 3693 0.877071 CGCTCCTTTGACTGTTGCAT 59.123 50.000 0.00 0.00 0.00 3.96
3828 3843 0.974010 TTGGGGTCGGACTTCGCTAT 60.974 55.000 8.23 0.00 39.05 2.97
3869 3884 9.778993 CAAAGGATGACATTTACATGTTAAGAG 57.221 33.333 2.30 0.84 44.22 2.85
3870 3885 8.739039 CCAAAGGATGACATTTACATGTTAAGA 58.261 33.333 2.30 0.00 44.22 2.10
3911 3926 9.334947 ACTGATACAAAGGATATATATGCATGC 57.665 33.333 11.82 11.82 0.00 4.06
3948 3965 2.508526 AGGAAGTGAATGGTCAAGCAC 58.491 47.619 0.00 0.00 34.87 4.40
4019 4116 4.134563 GTTTCACATATACCGGAATGGCT 58.865 43.478 9.46 0.00 43.94 4.75
4035 4132 6.403092 CCTTTGTTTGGAATTTGTGGTTTCAC 60.403 38.462 0.00 0.00 43.87 3.18
4124 4221 7.414540 GGTGATAGGCTTTGAATGTTCTAGTTG 60.415 40.741 0.00 0.00 0.00 3.16
4203 4301 2.125350 GAACGGAGAGCTGCCTGG 60.125 66.667 0.00 0.00 0.00 4.45
4204 4302 1.739562 GTGAACGGAGAGCTGCCTG 60.740 63.158 0.00 0.00 0.00 4.85
4218 4316 1.969208 TGGAAATGCAAGCCATGTGAA 59.031 42.857 0.00 0.00 33.49 3.18
4222 4320 0.804544 CGCTGGAAATGCAAGCCATG 60.805 55.000 6.08 0.00 33.49 3.66
4285 4761 4.115199 GCCGGCTCTCCAACCCAT 62.115 66.667 22.15 0.00 0.00 4.00
4438 4915 5.189736 ACTGAAGGTGCTATGTTTATCTCCA 59.810 40.000 0.00 0.00 0.00 3.86
4440 4917 6.595772 CACTGAAGGTGCTATGTTTATCTC 57.404 41.667 0.00 0.00 39.22 2.75
4470 5136 2.365901 TGGGGTAACGGGGCTAGG 60.366 66.667 0.00 0.00 37.60 3.02
4489 5155 1.550524 TGTGATGCTCCACTACTGTCC 59.449 52.381 9.72 0.00 37.89 4.02
4498 5164 2.029739 CAGCAATTTGTGTGATGCTCCA 60.030 45.455 0.00 0.00 45.49 3.86
4504 5170 0.244450 CGCCCAGCAATTTGTGTGAT 59.756 50.000 0.00 0.00 0.00 3.06
4559 5225 8.709386 AGGTATACTGATTAATGCGAATGATC 57.291 34.615 2.25 0.00 0.00 2.92
4566 5232 8.085296 AGAAGAGAAGGTATACTGATTAATGCG 58.915 37.037 2.25 0.00 0.00 4.73
4680 5376 5.717078 AGTGCCTGGCAAATTATCATATG 57.283 39.130 25.23 0.00 41.47 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.