Multiple sequence alignment - TraesCS4A01G179300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G179300 chr4A 100.000 2656 0 0 1 2656 452593126 452595781 0.000000e+00 4905.0
1 TraesCS4A01G179300 chr4A 83.711 706 90 15 990 1686 452358953 452359642 0.000000e+00 643.0
2 TraesCS4A01G179300 chr4A 93.491 338 20 2 5 342 583761488 583761153 3.950000e-138 501.0
3 TraesCS4A01G179300 chr4A 91.379 348 25 5 1 345 457435279 457435624 3.090000e-129 472.0
4 TraesCS4A01G179300 chr4A 90.385 364 28 7 1 360 457436900 457436540 3.090000e-129 472.0
5 TraesCS4A01G179300 chr4A 90.370 135 9 3 343 475 575178719 575178587 9.770000e-40 174.0
6 TraesCS4A01G179300 chr4D 90.894 1175 61 9 877 2040 121073847 121074986 0.000000e+00 1535.0
7 TraesCS4A01G179300 chr4D 93.867 587 25 9 2075 2656 121075064 121075644 0.000000e+00 874.0
8 TraesCS4A01G179300 chr4D 83.857 700 84 17 990 1685 120886129 120886803 8.020000e-180 640.0
9 TraesCS4A01G179300 chr4B 91.928 830 51 5 836 1661 183672418 183673235 0.000000e+00 1147.0
10 TraesCS4A01G179300 chr4B 93.266 594 25 9 2069 2656 183676321 183676905 0.000000e+00 861.0
11 TraesCS4A01G179300 chr4B 83.544 711 87 19 990 1685 183612494 183613189 2.880000e-179 638.0
12 TraesCS4A01G179300 chr4B 91.628 430 14 8 1678 2094 183675893 183676313 2.290000e-160 575.0
13 TraesCS4A01G179300 chr4B 91.525 59 2 2 755 812 183672357 183672413 7.880000e-11 78.7
14 TraesCS4A01G179300 chr2B 91.153 373 29 4 1 371 66357621 66357251 1.100000e-138 503.0
15 TraesCS4A01G179300 chr2B 90.299 134 10 2 343 475 402035000 402034869 3.510000e-39 172.0
16 TraesCS4A01G179300 chr2B 82.301 113 17 3 625 736 41664137 41664247 7.830000e-16 95.3
17 TraesCS4A01G179300 chr2A 90.811 370 34 0 1 370 761012864 761013233 1.840000e-136 496.0
18 TraesCS4A01G179300 chr2A 92.105 342 25 2 1 342 681507465 681507126 5.140000e-132 481.0
19 TraesCS4A01G179300 chr2A 90.299 134 10 2 343 475 677920808 677920677 3.510000e-39 172.0
20 TraesCS4A01G179300 chr2A 82.727 110 17 1 625 734 687153296 687153189 2.180000e-16 97.1
21 TraesCS4A01G179300 chr6A 92.105 342 24 2 1 342 328393134 328393472 1.850000e-131 479.0
22 TraesCS4A01G179300 chr6A 86.667 90 12 0 645 734 149280805 149280894 1.680000e-17 100.0
23 TraesCS4A01G179300 chr5A 89.918 367 32 5 5 370 443585223 443585585 4.000000e-128 468.0
24 TraesCS4A01G179300 chr5A 83.486 109 16 1 625 733 12024359 12024465 1.680000e-17 100.0
25 TraesCS4A01G179300 chr5D 87.532 393 36 9 5 395 122633126 122632745 2.430000e-120 442.0
26 TraesCS4A01G179300 chr1A 94.904 157 7 1 472 627 58629983 58630139 7.340000e-61 244.0
27 TraesCS4A01G179300 chr1B 93.750 128 5 3 349 475 677920631 677920506 3.490000e-44 189.0
28 TraesCS4A01G179300 chr7D 91.667 132 7 3 346 475 449483331 449483460 2.100000e-41 180.0
29 TraesCS4A01G179300 chr7D 86.667 90 12 0 645 734 541816025 541815936 1.680000e-17 100.0
30 TraesCS4A01G179300 chr3A 91.111 135 8 3 343 475 735847464 735847332 2.100000e-41 180.0
31 TraesCS4A01G179300 chrUn 92.683 123 7 1 344 466 91443494 91443614 2.720000e-40 176.0
32 TraesCS4A01G179300 chr3B 85.143 175 23 3 302 475 790333743 790333915 2.720000e-40 176.0
33 TraesCS4A01G179300 chr3B 83.444 151 22 3 473 621 572673286 572673137 1.280000e-28 137.0
34 TraesCS4A01G179300 chr1D 89.781 137 10 4 343 477 336545515 336545649 3.510000e-39 172.0
35 TraesCS4A01G179300 chr1D 83.636 165 13 8 458 618 105922050 105922204 2.760000e-30 143.0
36 TraesCS4A01G179300 chr1D 84.762 105 14 1 625 729 253515081 253514979 1.300000e-18 104.0
37 TraesCS4A01G179300 chr6D 87.368 95 10 2 637 729 217758049 217757955 1.010000e-19 108.0
38 TraesCS4A01G179300 chr2D 83.810 105 15 1 625 729 634173360 634173462 6.050000e-17 99.0
39 TraesCS4A01G179300 chr5B 82.569 109 17 1 625 733 304663909 304663803 7.830000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G179300 chr4A 452593126 452595781 2655 False 4905.000 4905 100.00000 1 2656 1 chr4A.!!$F2 2655
1 TraesCS4A01G179300 chr4A 452358953 452359642 689 False 643.000 643 83.71100 990 1686 1 chr4A.!!$F1 696
2 TraesCS4A01G179300 chr4D 121073847 121075644 1797 False 1204.500 1535 92.38050 877 2656 2 chr4D.!!$F2 1779
3 TraesCS4A01G179300 chr4D 120886129 120886803 674 False 640.000 640 83.85700 990 1685 1 chr4D.!!$F1 695
4 TraesCS4A01G179300 chr4B 183672357 183676905 4548 False 665.425 1147 92.08675 755 2656 4 chr4B.!!$F2 1901
5 TraesCS4A01G179300 chr4B 183612494 183613189 695 False 638.000 638 83.54400 990 1685 1 chr4B.!!$F1 695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 925 0.100503 GTGTGGCACCAACAAGTCAC 59.899 55.0 16.26 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2493 5282 0.110419 TACAACAAGAATGTGCGCGC 60.11 50.0 27.26 27.26 40.46 6.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.481800 GTCGAAAAATCCTATAACTTTTTACGG 57.518 33.333 0.00 0.00 33.50 4.02
27 28 9.434420 TCGAAAAATCCTATAACTTTTTACGGA 57.566 29.630 0.00 0.00 33.50 4.69
35 36 9.504708 TCCTATAACTTTTTACGGAATCAAACA 57.495 29.630 0.00 0.00 0.00 2.83
39 40 7.924103 AACTTTTTACGGAATCAAACATGAC 57.076 32.000 0.00 0.00 0.00 3.06
40 41 6.443792 ACTTTTTACGGAATCAAACATGACC 58.556 36.000 0.00 0.00 0.00 4.02
41 42 6.039941 ACTTTTTACGGAATCAAACATGACCA 59.960 34.615 0.00 0.00 0.00 4.02
42 43 6.392625 TTTTACGGAATCAAACATGACCAA 57.607 33.333 0.00 0.00 0.00 3.67
43 44 5.621197 TTACGGAATCAAACATGACCAAG 57.379 39.130 0.00 0.00 0.00 3.61
44 45 3.486383 ACGGAATCAAACATGACCAAGT 58.514 40.909 0.00 0.00 0.00 3.16
45 46 4.647611 ACGGAATCAAACATGACCAAGTA 58.352 39.130 0.00 0.00 0.00 2.24
46 47 5.253330 ACGGAATCAAACATGACCAAGTAT 58.747 37.500 0.00 0.00 0.00 2.12
47 48 5.710099 ACGGAATCAAACATGACCAAGTATT 59.290 36.000 0.00 0.00 0.00 1.89
64 65 7.079182 CAAGTATTGCACCCGTATAAAAAGA 57.921 36.000 0.00 0.00 40.39 2.52
65 66 7.703328 CAAGTATTGCACCCGTATAAAAAGAT 58.297 34.615 0.00 0.00 40.39 2.40
66 67 7.875327 AGTATTGCACCCGTATAAAAAGATT 57.125 32.000 0.00 0.00 0.00 2.40
67 68 8.967664 AGTATTGCACCCGTATAAAAAGATTA 57.032 30.769 0.00 0.00 0.00 1.75
68 69 9.398538 AGTATTGCACCCGTATAAAAAGATTAA 57.601 29.630 0.00 0.00 0.00 1.40
73 74 8.842280 TGCACCCGTATAAAAAGATTAAATAGG 58.158 33.333 0.00 0.00 0.00 2.57
74 75 8.294577 GCACCCGTATAAAAAGATTAAATAGGG 58.705 37.037 0.00 0.00 38.54 3.53
75 76 9.563748 CACCCGTATAAAAAGATTAAATAGGGA 57.436 33.333 0.00 0.00 36.57 4.20
93 94 9.660544 AAATAGGGAATGGCTTTTATTGTATCT 57.339 29.630 0.00 0.00 0.00 1.98
94 95 6.966534 AGGGAATGGCTTTTATTGTATCTG 57.033 37.500 0.00 0.00 0.00 2.90
95 96 5.835280 AGGGAATGGCTTTTATTGTATCTGG 59.165 40.000 0.00 0.00 0.00 3.86
96 97 5.011023 GGGAATGGCTTTTATTGTATCTGGG 59.989 44.000 0.00 0.00 0.00 4.45
97 98 5.011023 GGAATGGCTTTTATTGTATCTGGGG 59.989 44.000 0.00 0.00 0.00 4.96
98 99 4.601406 TGGCTTTTATTGTATCTGGGGT 57.399 40.909 0.00 0.00 0.00 4.95
99 100 4.532834 TGGCTTTTATTGTATCTGGGGTC 58.467 43.478 0.00 0.00 0.00 4.46
100 101 4.017958 TGGCTTTTATTGTATCTGGGGTCA 60.018 41.667 0.00 0.00 0.00 4.02
101 102 4.953579 GGCTTTTATTGTATCTGGGGTCAA 59.046 41.667 0.00 0.00 0.00 3.18
102 103 5.420739 GGCTTTTATTGTATCTGGGGTCAAA 59.579 40.000 0.00 0.00 0.00 2.69
103 104 6.405842 GGCTTTTATTGTATCTGGGGTCAAAG 60.406 42.308 0.00 0.00 0.00 2.77
104 105 6.377146 GCTTTTATTGTATCTGGGGTCAAAGA 59.623 38.462 0.00 0.00 0.00 2.52
105 106 7.068716 GCTTTTATTGTATCTGGGGTCAAAGAT 59.931 37.037 0.00 0.00 37.01 2.40
106 107 8.893563 TTTTATTGTATCTGGGGTCAAAGATT 57.106 30.769 0.00 0.00 34.91 2.40
107 108 8.893563 TTTATTGTATCTGGGGTCAAAGATTT 57.106 30.769 0.00 0.00 34.91 2.17
108 109 8.519799 TTATTGTATCTGGGGTCAAAGATTTC 57.480 34.615 0.00 0.00 34.91 2.17
109 110 4.855340 TGTATCTGGGGTCAAAGATTTCC 58.145 43.478 0.00 0.00 34.91 3.13
110 111 2.899303 TCTGGGGTCAAAGATTTCCC 57.101 50.000 0.00 0.00 39.22 3.97
111 112 2.069775 TCTGGGGTCAAAGATTTCCCA 58.930 47.619 0.00 0.00 44.59 4.37
112 113 2.448961 TCTGGGGTCAAAGATTTCCCAA 59.551 45.455 0.00 0.00 45.86 4.12
113 114 3.116939 TCTGGGGTCAAAGATTTCCCAAA 60.117 43.478 0.00 0.00 45.86 3.28
114 115 3.645687 CTGGGGTCAAAGATTTCCCAAAA 59.354 43.478 0.00 0.00 45.86 2.44
115 116 4.040755 TGGGGTCAAAGATTTCCCAAAAA 58.959 39.130 0.00 0.00 43.91 1.94
141 142 8.994429 ATGCTAGATACAAGTACTATTCATGC 57.006 34.615 0.00 1.27 0.00 4.06
142 143 8.183104 TGCTAGATACAAGTACTATTCATGCT 57.817 34.615 0.00 0.00 0.00 3.79
143 144 9.297037 TGCTAGATACAAGTACTATTCATGCTA 57.703 33.333 0.00 0.00 0.00 3.49
184 185 8.825667 TTTATTTATTTTGCCCTGAAGTCAAC 57.174 30.769 0.00 0.00 0.00 3.18
185 186 4.497473 TTATTTTGCCCTGAAGTCAACG 57.503 40.909 0.00 0.00 0.00 4.10
186 187 2.045561 TTTTGCCCTGAAGTCAACGA 57.954 45.000 0.00 0.00 0.00 3.85
187 188 1.593196 TTTGCCCTGAAGTCAACGAG 58.407 50.000 0.00 0.00 0.00 4.18
188 189 0.468226 TTGCCCTGAAGTCAACGAGT 59.532 50.000 0.00 0.00 0.00 4.18
189 190 1.334160 TGCCCTGAAGTCAACGAGTA 58.666 50.000 0.00 0.00 0.00 2.59
190 191 1.000506 TGCCCTGAAGTCAACGAGTAC 59.999 52.381 0.00 0.00 0.00 2.73
191 192 1.000506 GCCCTGAAGTCAACGAGTACA 59.999 52.381 0.00 0.00 0.00 2.90
192 193 2.547218 GCCCTGAAGTCAACGAGTACAA 60.547 50.000 0.00 0.00 0.00 2.41
193 194 3.864921 GCCCTGAAGTCAACGAGTACAAT 60.865 47.826 0.00 0.00 0.00 2.71
194 195 4.619863 GCCCTGAAGTCAACGAGTACAATA 60.620 45.833 0.00 0.00 0.00 1.90
195 196 4.863131 CCCTGAAGTCAACGAGTACAATAC 59.137 45.833 0.00 0.00 0.00 1.89
196 197 4.863131 CCTGAAGTCAACGAGTACAATACC 59.137 45.833 0.00 0.00 0.00 2.73
197 198 5.336531 CCTGAAGTCAACGAGTACAATACCT 60.337 44.000 0.00 0.00 0.00 3.08
198 199 6.092955 TGAAGTCAACGAGTACAATACCTT 57.907 37.500 0.00 0.00 0.00 3.50
199 200 5.924254 TGAAGTCAACGAGTACAATACCTTG 59.076 40.000 0.00 0.00 38.39 3.61
200 201 4.817517 AGTCAACGAGTACAATACCTTGG 58.182 43.478 0.00 0.00 36.64 3.61
201 202 3.370061 GTCAACGAGTACAATACCTTGGC 59.630 47.826 0.00 0.00 36.64 4.52
202 203 2.676342 CAACGAGTACAATACCTTGGCC 59.324 50.000 0.00 0.00 36.64 5.36
203 204 1.903860 ACGAGTACAATACCTTGGCCA 59.096 47.619 0.00 0.00 36.64 5.36
204 205 2.303600 ACGAGTACAATACCTTGGCCAA 59.696 45.455 19.25 19.25 36.64 4.52
205 206 3.244630 ACGAGTACAATACCTTGGCCAAA 60.245 43.478 20.91 5.01 36.64 3.28
206 207 3.126343 CGAGTACAATACCTTGGCCAAAC 59.874 47.826 20.91 12.00 36.64 2.93
207 208 4.332828 GAGTACAATACCTTGGCCAAACT 58.667 43.478 20.91 16.81 36.64 2.66
208 209 4.736473 AGTACAATACCTTGGCCAAACTT 58.264 39.130 20.91 8.96 36.64 2.66
209 210 5.144832 AGTACAATACCTTGGCCAAACTTT 58.855 37.500 20.91 8.12 36.64 2.66
210 211 5.600898 AGTACAATACCTTGGCCAAACTTTT 59.399 36.000 20.91 8.49 36.64 2.27
211 212 5.366482 ACAATACCTTGGCCAAACTTTTT 57.634 34.783 20.91 7.05 36.64 1.94
212 213 6.487299 ACAATACCTTGGCCAAACTTTTTA 57.513 33.333 20.91 4.87 36.64 1.52
213 214 7.073457 ACAATACCTTGGCCAAACTTTTTAT 57.927 32.000 20.91 6.94 36.64 1.40
214 215 8.196378 ACAATACCTTGGCCAAACTTTTTATA 57.804 30.769 20.91 3.68 36.64 0.98
215 216 8.821817 ACAATACCTTGGCCAAACTTTTTATAT 58.178 29.630 20.91 5.77 36.64 0.86
216 217 9.097257 CAATACCTTGGCCAAACTTTTTATATG 57.903 33.333 20.91 2.67 0.00 1.78
217 218 6.926630 ACCTTGGCCAAACTTTTTATATGA 57.073 33.333 20.91 0.00 0.00 2.15
218 219 6.935167 ACCTTGGCCAAACTTTTTATATGAG 58.065 36.000 20.91 1.66 0.00 2.90
219 220 6.496911 ACCTTGGCCAAACTTTTTATATGAGT 59.503 34.615 20.91 1.12 0.00 3.41
220 221 7.672239 ACCTTGGCCAAACTTTTTATATGAGTA 59.328 33.333 20.91 0.00 0.00 2.59
221 222 7.973944 CCTTGGCCAAACTTTTTATATGAGTAC 59.026 37.037 20.91 0.00 0.00 2.73
222 223 8.410673 TTGGCCAAACTTTTTATATGAGTACA 57.589 30.769 17.98 0.00 0.00 2.90
223 224 8.410673 TGGCCAAACTTTTTATATGAGTACAA 57.589 30.769 0.61 0.00 0.00 2.41
224 225 9.030452 TGGCCAAACTTTTTATATGAGTACAAT 57.970 29.630 0.61 0.00 0.00 2.71
334 335 3.669354 CACCCGAGTGCTCCTAATC 57.331 57.895 0.00 0.00 37.14 1.75
335 336 0.105039 CACCCGAGTGCTCCTAATCC 59.895 60.000 0.00 0.00 37.14 3.01
336 337 1.364171 CCCGAGTGCTCCTAATCCG 59.636 63.158 0.00 0.00 0.00 4.18
337 338 1.300233 CCGAGTGCTCCTAATCCGC 60.300 63.158 0.00 0.00 0.00 5.54
338 339 1.736586 CGAGTGCTCCTAATCCGCT 59.263 57.895 0.00 0.00 0.00 5.52
339 340 0.103208 CGAGTGCTCCTAATCCGCTT 59.897 55.000 0.00 0.00 0.00 4.68
340 341 1.859383 GAGTGCTCCTAATCCGCTTC 58.141 55.000 0.00 0.00 0.00 3.86
341 342 0.466124 AGTGCTCCTAATCCGCTTCC 59.534 55.000 0.00 0.00 0.00 3.46
342 343 0.533085 GTGCTCCTAATCCGCTTCCC 60.533 60.000 0.00 0.00 0.00 3.97
343 344 0.980754 TGCTCCTAATCCGCTTCCCA 60.981 55.000 0.00 0.00 0.00 4.37
344 345 0.398318 GCTCCTAATCCGCTTCCCAT 59.602 55.000 0.00 0.00 0.00 4.00
345 346 1.202818 GCTCCTAATCCGCTTCCCATT 60.203 52.381 0.00 0.00 0.00 3.16
346 347 2.498167 CTCCTAATCCGCTTCCCATTG 58.502 52.381 0.00 0.00 0.00 2.82
347 348 1.142870 TCCTAATCCGCTTCCCATTGG 59.857 52.381 0.00 0.00 0.00 3.16
348 349 0.954452 CTAATCCGCTTCCCATTGGC 59.046 55.000 0.00 0.00 0.00 4.52
349 350 0.257328 TAATCCGCTTCCCATTGGCA 59.743 50.000 0.00 0.00 0.00 4.92
350 351 0.397535 AATCCGCTTCCCATTGGCAT 60.398 50.000 0.00 0.00 0.00 4.40
351 352 1.111116 ATCCGCTTCCCATTGGCATG 61.111 55.000 0.00 0.00 0.00 4.06
352 353 2.053865 CCGCTTCCCATTGGCATGT 61.054 57.895 0.00 0.00 0.00 3.21
353 354 1.606885 CCGCTTCCCATTGGCATGTT 61.607 55.000 0.00 0.00 0.00 2.71
354 355 1.102154 CGCTTCCCATTGGCATGTTA 58.898 50.000 0.00 0.00 0.00 2.41
355 356 1.202290 CGCTTCCCATTGGCATGTTAC 60.202 52.381 0.00 0.00 0.00 2.50
356 357 2.102578 GCTTCCCATTGGCATGTTACT 58.897 47.619 0.00 0.00 0.00 2.24
357 358 3.287222 GCTTCCCATTGGCATGTTACTA 58.713 45.455 0.00 0.00 0.00 1.82
358 359 3.066760 GCTTCCCATTGGCATGTTACTAC 59.933 47.826 0.00 0.00 0.00 2.73
359 360 4.526970 CTTCCCATTGGCATGTTACTACT 58.473 43.478 0.00 0.00 0.00 2.57
360 361 4.584638 TCCCATTGGCATGTTACTACTT 57.415 40.909 0.00 0.00 0.00 2.24
361 362 4.929479 TCCCATTGGCATGTTACTACTTT 58.071 39.130 0.00 0.00 0.00 2.66
362 363 6.068461 TCCCATTGGCATGTTACTACTTTA 57.932 37.500 0.00 0.00 0.00 1.85
363 364 6.668645 TCCCATTGGCATGTTACTACTTTAT 58.331 36.000 0.00 0.00 0.00 1.40
364 365 6.545666 TCCCATTGGCATGTTACTACTTTATG 59.454 38.462 0.00 0.00 0.00 1.90
365 366 6.321181 CCCATTGGCATGTTACTACTTTATGT 59.679 38.462 0.00 0.00 0.00 2.29
366 367 7.147915 CCCATTGGCATGTTACTACTTTATGTT 60.148 37.037 0.00 0.00 0.00 2.71
367 368 8.898761 CCATTGGCATGTTACTACTTTATGTTA 58.101 33.333 0.00 0.00 0.00 2.41
368 369 9.716507 CATTGGCATGTTACTACTTTATGTTAC 57.283 33.333 0.00 0.00 0.00 2.50
369 370 9.681062 ATTGGCATGTTACTACTTTATGTTACT 57.319 29.630 0.00 0.00 0.00 2.24
371 372 9.590451 TGGCATGTTACTACTTTATGTTACTAC 57.410 33.333 0.00 0.00 0.00 2.73
372 373 9.038803 GGCATGTTACTACTTTATGTTACTACC 57.961 37.037 0.00 0.00 0.00 3.18
373 374 9.813446 GCATGTTACTACTTTATGTTACTACCT 57.187 33.333 0.00 0.00 0.00 3.08
406 407 9.587772 AGTGAAGAGTAACATATGTGTGATAAC 57.412 33.333 9.63 2.39 38.92 1.89
407 408 9.366216 GTGAAGAGTAACATATGTGTGATAACA 57.634 33.333 9.63 3.56 38.92 2.41
416 417 8.565896 ACATATGTGTGATAACATGAAACACT 57.434 30.769 7.78 0.53 40.93 3.55
417 418 9.013229 ACATATGTGTGATAACATGAAACACTT 57.987 29.630 7.78 7.12 40.93 3.16
418 419 9.494479 CATATGTGTGATAACATGAAACACTTC 57.506 33.333 0.00 1.95 40.93 3.01
419 420 6.934048 TGTGTGATAACATGAAACACTTCA 57.066 33.333 0.00 4.22 45.53 3.02
445 446 9.883142 ATTTATTAGGCTATAGACTCATCTTGC 57.117 33.333 12.64 0.00 36.29 4.01
446 447 5.730296 TTAGGCTATAGACTCATCTTGCC 57.270 43.478 12.64 0.00 41.26 4.52
447 448 3.855668 AGGCTATAGACTCATCTTGCCT 58.144 45.455 0.83 0.00 43.78 4.75
448 449 4.230455 AGGCTATAGACTCATCTTGCCTT 58.770 43.478 0.83 0.00 45.01 4.35
449 450 4.283212 AGGCTATAGACTCATCTTGCCTTC 59.717 45.833 0.83 0.00 45.01 3.46
450 451 4.039730 GGCTATAGACTCATCTTGCCTTCA 59.960 45.833 3.21 0.00 39.50 3.02
451 452 5.279910 GGCTATAGACTCATCTTGCCTTCAT 60.280 44.000 3.21 0.00 39.50 2.57
452 453 6.071108 GGCTATAGACTCATCTTGCCTTCATA 60.071 42.308 3.21 0.00 39.50 2.15
453 454 7.364585 GGCTATAGACTCATCTTGCCTTCATAT 60.365 40.741 3.21 0.00 39.50 1.78
454 455 7.492020 GCTATAGACTCATCTTGCCTTCATATG 59.508 40.741 3.21 0.00 36.29 1.78
455 456 5.627182 AGACTCATCTTGCCTTCATATGT 57.373 39.130 1.90 0.00 0.00 2.29
456 457 5.366460 AGACTCATCTTGCCTTCATATGTG 58.634 41.667 1.90 0.00 0.00 3.21
457 458 5.104610 AGACTCATCTTGCCTTCATATGTGT 60.105 40.000 1.90 0.00 31.33 3.72
458 459 4.880120 ACTCATCTTGCCTTCATATGTGTG 59.120 41.667 1.90 0.00 29.41 3.82
459 460 5.101648 TCATCTTGCCTTCATATGTGTGA 57.898 39.130 1.90 0.00 0.00 3.58
460 461 5.687780 TCATCTTGCCTTCATATGTGTGAT 58.312 37.500 1.90 0.00 0.00 3.06
461 462 5.529800 TCATCTTGCCTTCATATGTGTGATG 59.470 40.000 1.90 8.36 0.00 3.07
462 463 4.847198 TCTTGCCTTCATATGTGTGATGT 58.153 39.130 1.90 0.00 0.00 3.06
463 464 5.255687 TCTTGCCTTCATATGTGTGATGTT 58.744 37.500 1.90 0.00 0.00 2.71
464 465 6.413892 TCTTGCCTTCATATGTGTGATGTTA 58.586 36.000 1.90 0.00 0.00 2.41
465 466 6.316140 TCTTGCCTTCATATGTGTGATGTTAC 59.684 38.462 1.90 0.00 0.00 2.50
466 467 4.881273 TGCCTTCATATGTGTGATGTTACC 59.119 41.667 1.90 0.00 0.00 2.85
467 468 4.275936 GCCTTCATATGTGTGATGTTACCC 59.724 45.833 1.90 0.00 0.00 3.69
468 469 5.436175 CCTTCATATGTGTGATGTTACCCA 58.564 41.667 1.90 0.00 0.00 4.51
469 470 5.296780 CCTTCATATGTGTGATGTTACCCAC 59.703 44.000 1.90 0.00 0.00 4.61
470 471 5.428184 TCATATGTGTGATGTTACCCACA 57.572 39.130 1.90 4.10 41.58 4.17
475 476 2.844946 TGTGATGTTACCCACACAGTG 58.155 47.619 0.00 0.00 38.61 3.66
496 497 1.900237 CGGAGCTTGCAGCAAATTAC 58.100 50.000 9.65 0.00 45.56 1.89
497 498 1.470098 CGGAGCTTGCAGCAAATTACT 59.530 47.619 9.65 4.40 45.56 2.24
498 499 2.730090 CGGAGCTTGCAGCAAATTACTG 60.730 50.000 9.65 2.93 45.56 2.74
499 500 2.416431 GGAGCTTGCAGCAAATTACTGG 60.416 50.000 9.65 0.00 45.56 4.00
500 501 1.547372 AGCTTGCAGCAAATTACTGGG 59.453 47.619 9.65 0.00 45.56 4.45
501 502 2.000429 CTTGCAGCAAATTACTGGGC 58.000 50.000 9.65 0.00 35.62 5.36
502 503 0.243365 TTGCAGCAAATTACTGGGCG 59.757 50.000 4.99 0.00 35.62 6.13
503 504 1.139520 GCAGCAAATTACTGGGCGG 59.860 57.895 9.70 0.00 35.62 6.13
504 505 1.809207 CAGCAAATTACTGGGCGGG 59.191 57.895 1.31 0.00 0.00 6.13
505 506 1.379843 AGCAAATTACTGGGCGGGG 60.380 57.895 0.00 0.00 0.00 5.73
506 507 1.680989 GCAAATTACTGGGCGGGGT 60.681 57.895 0.00 0.00 0.00 4.95
507 508 1.944234 GCAAATTACTGGGCGGGGTG 61.944 60.000 0.00 0.00 0.00 4.61
508 509 1.000145 AAATTACTGGGCGGGGTGG 60.000 57.895 0.00 0.00 0.00 4.61
509 510 3.655350 AATTACTGGGCGGGGTGGC 62.655 63.158 0.00 0.00 43.88 5.01
528 529 2.825861 CAGGCCAAACTGCAAGAAAT 57.174 45.000 5.01 0.00 37.43 2.17
529 530 3.116079 CAGGCCAAACTGCAAGAAATT 57.884 42.857 5.01 0.00 37.43 1.82
530 531 4.255833 CAGGCCAAACTGCAAGAAATTA 57.744 40.909 5.01 0.00 37.43 1.40
531 532 4.240096 CAGGCCAAACTGCAAGAAATTAG 58.760 43.478 5.01 0.00 37.43 1.73
532 533 3.259123 AGGCCAAACTGCAAGAAATTAGG 59.741 43.478 5.01 0.00 37.43 2.69
533 534 3.258123 GGCCAAACTGCAAGAAATTAGGA 59.742 43.478 0.00 0.00 37.43 2.94
534 535 4.081476 GGCCAAACTGCAAGAAATTAGGAT 60.081 41.667 0.00 0.00 37.43 3.24
535 536 5.482006 GCCAAACTGCAAGAAATTAGGATT 58.518 37.500 0.00 0.00 37.43 3.01
536 537 5.578336 GCCAAACTGCAAGAAATTAGGATTC 59.422 40.000 0.00 0.00 37.43 2.52
537 538 6.101997 CCAAACTGCAAGAAATTAGGATTCC 58.898 40.000 0.00 0.00 37.43 3.01
538 539 5.921962 AACTGCAAGAAATTAGGATTCCC 57.078 39.130 0.00 0.00 37.43 3.97
539 540 5.198602 ACTGCAAGAAATTAGGATTCCCT 57.801 39.130 0.00 0.00 41.68 4.20
540 541 5.196695 ACTGCAAGAAATTAGGATTCCCTC 58.803 41.667 0.00 0.00 40.00 4.30
541 542 4.199310 TGCAAGAAATTAGGATTCCCTCG 58.801 43.478 0.00 0.00 43.14 4.63
542 543 3.565902 GCAAGAAATTAGGATTCCCTCGG 59.434 47.826 0.00 0.00 43.14 4.63
543 544 4.686122 GCAAGAAATTAGGATTCCCTCGGA 60.686 45.833 0.00 0.00 43.14 4.55
544 545 4.691326 AGAAATTAGGATTCCCTCGGAC 57.309 45.455 0.00 0.00 43.14 4.79
545 546 3.391626 AGAAATTAGGATTCCCTCGGACC 59.608 47.826 0.00 0.00 43.14 4.46
546 547 2.489528 ATTAGGATTCCCTCGGACCA 57.510 50.000 0.00 0.00 43.14 4.02
547 548 2.489528 TTAGGATTCCCTCGGACCAT 57.510 50.000 0.00 0.00 43.14 3.55
548 549 1.717032 TAGGATTCCCTCGGACCATG 58.283 55.000 0.00 0.00 43.14 3.66
549 550 1.056700 AGGATTCCCTCGGACCATGG 61.057 60.000 11.19 11.19 38.86 3.66
550 551 1.451936 GATTCCCTCGGACCATGGG 59.548 63.158 18.09 11.58 42.20 4.00
551 552 2.682582 GATTCCCTCGGACCATGGGC 62.683 65.000 18.09 14.45 40.69 5.36
552 553 3.943137 TTCCCTCGGACCATGGGCT 62.943 63.158 19.55 0.00 40.69 5.19
553 554 4.181010 CCCTCGGACCATGGGCTG 62.181 72.222 21.73 21.73 33.88 4.85
563 564 2.486472 CCATGGGCTGGCTCTAATAG 57.514 55.000 2.85 0.00 38.47 1.73
564 565 1.004044 CCATGGGCTGGCTCTAATAGG 59.996 57.143 2.85 0.00 38.47 2.57
565 566 1.980765 CATGGGCTGGCTCTAATAGGA 59.019 52.381 0.00 0.00 0.00 2.94
566 567 1.722034 TGGGCTGGCTCTAATAGGAG 58.278 55.000 0.00 0.00 36.50 3.69
573 574 3.896317 CTCTAATAGGAGCGGGTGC 57.104 57.895 0.00 0.00 43.24 5.01
574 575 1.040646 CTCTAATAGGAGCGGGTGCA 58.959 55.000 0.66 0.00 46.23 4.57
575 576 1.000283 CTCTAATAGGAGCGGGTGCAG 60.000 57.143 0.66 0.00 46.23 4.41
576 577 0.601311 CTAATAGGAGCGGGTGCAGC 60.601 60.000 7.55 7.55 46.23 5.25
577 578 1.334384 TAATAGGAGCGGGTGCAGCA 61.334 55.000 19.06 0.00 46.23 4.41
578 579 2.196997 AATAGGAGCGGGTGCAGCAA 62.197 55.000 19.06 0.00 46.23 3.91
579 580 2.196997 ATAGGAGCGGGTGCAGCAAA 62.197 55.000 19.06 0.00 46.23 3.68
580 581 2.803155 TAGGAGCGGGTGCAGCAAAG 62.803 60.000 19.06 9.44 46.23 2.77
581 582 4.410743 GAGCGGGTGCAGCAAAGC 62.411 66.667 19.06 18.60 46.23 3.51
582 583 4.962836 AGCGGGTGCAGCAAAGCT 62.963 61.111 21.43 21.43 46.23 3.74
614 615 2.927553 GCCATGTAGCCTTGTTGAAG 57.072 50.000 0.00 0.00 0.00 3.02
615 616 1.135286 GCCATGTAGCCTTGTTGAAGC 60.135 52.381 0.00 0.00 0.00 3.86
616 617 2.440409 CCATGTAGCCTTGTTGAAGCT 58.560 47.619 0.00 0.00 0.00 3.74
617 618 2.421424 CCATGTAGCCTTGTTGAAGCTC 59.579 50.000 0.00 0.00 0.00 4.09
618 619 2.185004 TGTAGCCTTGTTGAAGCTCC 57.815 50.000 0.00 0.00 0.00 4.70
619 620 1.079503 GTAGCCTTGTTGAAGCTCCG 58.920 55.000 0.00 0.00 0.00 4.63
620 621 0.673644 TAGCCTTGTTGAAGCTCCGC 60.674 55.000 0.00 0.00 0.00 5.54
621 622 2.982744 GCCTTGTTGAAGCTCCGCC 61.983 63.158 0.00 0.00 0.00 6.13
622 623 2.680913 CCTTGTTGAAGCTCCGCCG 61.681 63.158 0.00 0.00 0.00 6.46
623 624 2.668212 TTGTTGAAGCTCCGCCGG 60.668 61.111 0.00 0.00 0.00 6.13
624 625 3.469863 TTGTTGAAGCTCCGCCGGT 62.470 57.895 1.63 0.00 0.00 5.28
625 626 3.423154 GTTGAAGCTCCGCCGGTG 61.423 66.667 8.42 8.42 0.00 4.94
626 627 3.936203 TTGAAGCTCCGCCGGTGT 61.936 61.111 15.14 0.00 0.00 4.16
627 628 3.469863 TTGAAGCTCCGCCGGTGTT 62.470 57.895 15.14 0.54 0.00 3.32
628 629 2.102109 TTGAAGCTCCGCCGGTGTTA 62.102 55.000 15.14 0.20 0.00 2.41
629 630 2.047560 AAGCTCCGCCGGTGTTAC 60.048 61.111 15.14 2.07 0.00 2.50
630 631 3.600898 AAGCTCCGCCGGTGTTACC 62.601 63.158 15.14 0.00 34.05 2.85
631 632 4.382320 GCTCCGCCGGTGTTACCA 62.382 66.667 15.14 0.00 38.47 3.25
632 633 2.433664 CTCCGCCGGTGTTACCAC 60.434 66.667 15.14 0.00 38.47 4.16
633 634 3.229156 CTCCGCCGGTGTTACCACA 62.229 63.158 15.14 0.00 43.71 4.17
634 635 2.046700 CCGCCGGTGTTACCACAT 60.047 61.111 15.14 0.00 43.71 3.21
635 636 2.395360 CCGCCGGTGTTACCACATG 61.395 63.158 15.14 0.00 43.71 3.21
636 637 2.874751 GCCGGTGTTACCACATGC 59.125 61.111 1.90 0.00 43.71 4.06
637 638 1.674322 GCCGGTGTTACCACATGCT 60.674 57.895 1.90 0.00 43.71 3.79
638 639 1.241315 GCCGGTGTTACCACATGCTT 61.241 55.000 1.90 0.00 43.71 3.91
639 640 1.243902 CCGGTGTTACCACATGCTTT 58.756 50.000 0.00 0.00 43.71 3.51
640 641 1.611491 CCGGTGTTACCACATGCTTTT 59.389 47.619 0.00 0.00 43.71 2.27
641 642 2.035321 CCGGTGTTACCACATGCTTTTT 59.965 45.455 0.00 0.00 43.71 1.94
728 729 9.474313 ACATATGTTATTTTCATTGTGGGTAGT 57.526 29.630 1.41 0.00 0.00 2.73
729 730 9.734620 CATATGTTATTTTCATTGTGGGTAGTG 57.265 33.333 0.00 0.00 0.00 2.74
730 731 7.775053 ATGTTATTTTCATTGTGGGTAGTGT 57.225 32.000 0.00 0.00 0.00 3.55
731 732 8.871629 ATGTTATTTTCATTGTGGGTAGTGTA 57.128 30.769 0.00 0.00 0.00 2.90
732 733 8.693120 TGTTATTTTCATTGTGGGTAGTGTAA 57.307 30.769 0.00 0.00 0.00 2.41
733 734 8.788806 TGTTATTTTCATTGTGGGTAGTGTAAG 58.211 33.333 0.00 0.00 0.00 2.34
734 735 6.834168 ATTTTCATTGTGGGTAGTGTAAGG 57.166 37.500 0.00 0.00 0.00 2.69
735 736 5.570205 TTTCATTGTGGGTAGTGTAAGGA 57.430 39.130 0.00 0.00 0.00 3.36
736 737 5.570205 TTCATTGTGGGTAGTGTAAGGAA 57.430 39.130 0.00 0.00 0.00 3.36
737 738 5.570205 TCATTGTGGGTAGTGTAAGGAAA 57.430 39.130 0.00 0.00 0.00 3.13
738 739 6.134535 TCATTGTGGGTAGTGTAAGGAAAT 57.865 37.500 0.00 0.00 0.00 2.17
739 740 5.943416 TCATTGTGGGTAGTGTAAGGAAATG 59.057 40.000 0.00 0.00 0.00 2.32
740 741 4.295141 TGTGGGTAGTGTAAGGAAATGG 57.705 45.455 0.00 0.00 0.00 3.16
741 742 3.911260 TGTGGGTAGTGTAAGGAAATGGA 59.089 43.478 0.00 0.00 0.00 3.41
742 743 4.019681 TGTGGGTAGTGTAAGGAAATGGAG 60.020 45.833 0.00 0.00 0.00 3.86
743 744 3.521937 TGGGTAGTGTAAGGAAATGGAGG 59.478 47.826 0.00 0.00 0.00 4.30
744 745 3.118000 GGGTAGTGTAAGGAAATGGAGGG 60.118 52.174 0.00 0.00 0.00 4.30
745 746 3.778629 GGTAGTGTAAGGAAATGGAGGGA 59.221 47.826 0.00 0.00 0.00 4.20
746 747 4.141688 GGTAGTGTAAGGAAATGGAGGGAG 60.142 50.000 0.00 0.00 0.00 4.30
747 748 3.532102 AGTGTAAGGAAATGGAGGGAGT 58.468 45.455 0.00 0.00 0.00 3.85
748 749 4.695606 AGTGTAAGGAAATGGAGGGAGTA 58.304 43.478 0.00 0.00 0.00 2.59
749 750 5.098663 AGTGTAAGGAAATGGAGGGAGTAA 58.901 41.667 0.00 0.00 0.00 2.24
750 751 5.045797 AGTGTAAGGAAATGGAGGGAGTAAC 60.046 44.000 0.00 0.00 0.00 2.50
751 752 5.045797 GTGTAAGGAAATGGAGGGAGTAACT 60.046 44.000 0.00 0.00 0.00 2.24
752 753 5.550403 TGTAAGGAAATGGAGGGAGTAACTT 59.450 40.000 0.00 0.00 0.00 2.66
753 754 4.846168 AGGAAATGGAGGGAGTAACTTC 57.154 45.455 0.00 0.00 0.00 3.01
761 762 6.786967 TGGAGGGAGTAACTTCTTATGTAC 57.213 41.667 0.00 0.00 0.00 2.90
769 770 8.138712 GGAGTAACTTCTTATGTACTGAGATGG 58.861 40.741 0.00 0.00 0.00 3.51
770 771 8.596781 AGTAACTTCTTATGTACTGAGATGGT 57.403 34.615 0.00 0.00 0.00 3.55
847 848 5.689961 ACTAAAGCAGCAACGTTTAATTTGG 59.310 36.000 0.00 0.98 0.00 3.28
871 872 3.987547 CGGAGAGAGTACCGTATACTCA 58.012 50.000 20.31 0.00 44.66 3.41
872 873 4.567971 CGGAGAGAGTACCGTATACTCAT 58.432 47.826 20.31 11.79 44.66 2.90
924 925 0.100503 GTGTGGCACCAACAAGTCAC 59.899 55.000 16.26 0.00 0.00 3.67
946 947 2.482336 TCGTCCGGTCACAAATCAAATG 59.518 45.455 0.00 0.00 0.00 2.32
947 948 2.225491 CGTCCGGTCACAAATCAAATGT 59.775 45.455 0.00 0.00 0.00 2.71
963 964 5.430886 TCAAATGTCCAGATCCACATACAG 58.569 41.667 3.60 0.00 32.74 2.74
980 981 0.809241 CAGAAGGGATCGTCAGCAGC 60.809 60.000 0.00 0.00 0.00 5.25
1005 1007 4.816984 GAGCAGCTGGGCATGGCT 62.817 66.667 19.78 3.63 39.60 4.75
1216 1224 1.949847 CTGCTCCTACCACGTCCCTG 61.950 65.000 0.00 0.00 0.00 4.45
1232 1240 1.293498 CTGCAAGCCTCACCGTACT 59.707 57.895 0.00 0.00 0.00 2.73
1238 1246 0.603569 AGCCTCACCGTACTTCACTG 59.396 55.000 0.00 0.00 0.00 3.66
1252 1263 1.981256 TCACTGGCTTTCTTGGTTCC 58.019 50.000 0.00 0.00 0.00 3.62
1268 1283 8.263940 TCTTGGTTCCTTCGTTATTAATTCAG 57.736 34.615 0.00 0.00 0.00 3.02
1271 1286 6.596497 TGGTTCCTTCGTTATTAATTCAGTCC 59.404 38.462 0.00 0.00 0.00 3.85
1272 1287 6.037940 GGTTCCTTCGTTATTAATTCAGTCCC 59.962 42.308 0.00 0.00 0.00 4.46
1281 1296 2.717639 AATTCAGTCCCCTTGATCCG 57.282 50.000 0.00 0.00 0.00 4.18
1302 1317 1.949525 CGCCAGCTAAGCCAAATACAT 59.050 47.619 2.51 0.00 0.00 2.29
1306 1321 4.520492 GCCAGCTAAGCCAAATACATACAT 59.480 41.667 0.00 0.00 0.00 2.29
1308 1323 5.455392 CAGCTAAGCCAAATACATACATGC 58.545 41.667 0.00 0.00 0.00 4.06
1310 1325 5.009010 AGCTAAGCCAAATACATACATGCAC 59.991 40.000 0.00 0.00 0.00 4.57
1311 1326 3.969117 AGCCAAATACATACATGCACG 57.031 42.857 0.00 0.00 0.00 5.34
1328 1343 2.960170 GTACACACGCGGGACTCT 59.040 61.111 19.19 0.00 0.00 3.24
1427 1442 2.949644 CCAAAACTTCAAGGTCTCCGTT 59.050 45.455 0.00 0.00 0.00 4.44
1552 1567 4.681978 GCTCCTCACCAACGCCGT 62.682 66.667 0.00 0.00 0.00 5.68
1656 1674 7.247929 ACTAGTCTTAAAAGCAACTTGTGAC 57.752 36.000 0.00 0.00 0.00 3.67
1661 1679 6.037172 GTCTTAAAAGCAACTTGTGACTCTGA 59.963 38.462 0.00 0.00 0.00 3.27
1686 4345 2.091994 TGCCTACTCCTACTCCACTACC 60.092 54.545 0.00 0.00 0.00 3.18
1699 4358 4.037684 ACTCCACTACCGTCTATTATGCAC 59.962 45.833 0.00 0.00 0.00 4.57
1718 4383 3.430453 CACCTTCTTTCCTAAATGGCCA 58.570 45.455 8.56 8.56 35.26 5.36
1736 4401 4.263462 TGGCCACTCATGTATCTTTCTTGT 60.263 41.667 0.00 0.00 0.00 3.16
1792 4457 6.404734 GGAATAAAAGGATGCGTGTTCTCAAT 60.405 38.462 0.00 0.00 0.00 2.57
1823 4488 3.912496 TGTGTACTGAATCCATCCCAG 57.088 47.619 0.00 0.00 0.00 4.45
2014 4691 1.633432 ACAGCCTGGCCTAACACATAA 59.367 47.619 16.57 0.00 0.00 1.90
2122 4907 2.507058 TCTGATCTACCCAGCAAGCATT 59.493 45.455 0.00 0.00 0.00 3.56
2129 4914 1.342174 ACCCAGCAAGCATTTCAGTTG 59.658 47.619 0.00 0.00 0.00 3.16
2151 4936 5.316167 TGTAACATTGCAAGGAAGATGACT 58.684 37.500 19.41 0.00 0.00 3.41
2223 5008 3.623060 GCTTATTGCAACGAAGATGGAGA 59.377 43.478 21.49 0.00 42.31 3.71
2243 5028 2.290641 GACAACACAGGACACCATCAAC 59.709 50.000 0.00 0.00 0.00 3.18
2252 5037 6.151648 CACAGGACACCATCAACAATTAGAAT 59.848 38.462 0.00 0.00 0.00 2.40
2347 5135 8.608844 TCCAACACAAATTTAACAACACTTTT 57.391 26.923 0.00 0.00 0.00 2.27
2451 5239 5.163499 GGTGTCAAATTTGTCCTTTGTACCA 60.163 40.000 17.47 0.00 39.23 3.25
2493 5282 8.029642 ACGTCTTATGTAGGAGAAAACAAATG 57.970 34.615 0.00 0.00 0.00 2.32
2494 5283 6.961554 CGTCTTATGTAGGAGAAAACAAATGC 59.038 38.462 0.00 0.00 0.00 3.56
2520 5309 4.700213 GCACATTCTTGTTGTATACCACCT 59.300 41.667 4.75 0.00 32.34 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.481800 CCGTAAAAAGTTATAGGATTTTTCGAC 57.518 33.333 13.93 6.90 37.34 4.20
1 2 9.434420 TCCGTAAAAAGTTATAGGATTTTTCGA 57.566 29.630 13.93 0.00 37.34 3.71
9 10 9.504708 TGTTTGATTCCGTAAAAAGTTATAGGA 57.495 29.630 0.00 0.00 31.22 2.94
13 14 9.620660 GTCATGTTTGATTCCGTAAAAAGTTAT 57.379 29.630 0.00 0.00 33.56 1.89
14 15 8.077386 GGTCATGTTTGATTCCGTAAAAAGTTA 58.923 33.333 0.00 0.00 33.56 2.24
15 16 6.921307 GGTCATGTTTGATTCCGTAAAAAGTT 59.079 34.615 0.00 0.00 33.56 2.66
16 17 6.039941 TGGTCATGTTTGATTCCGTAAAAAGT 59.960 34.615 0.00 0.00 33.56 2.66
17 18 6.442952 TGGTCATGTTTGATTCCGTAAAAAG 58.557 36.000 0.00 0.00 33.56 2.27
18 19 6.392625 TGGTCATGTTTGATTCCGTAAAAA 57.607 33.333 0.00 0.00 33.56 1.94
19 20 6.039941 ACTTGGTCATGTTTGATTCCGTAAAA 59.960 34.615 0.00 0.00 33.56 1.52
20 21 5.533154 ACTTGGTCATGTTTGATTCCGTAAA 59.467 36.000 0.00 0.00 33.56 2.01
21 22 5.067273 ACTTGGTCATGTTTGATTCCGTAA 58.933 37.500 0.00 0.00 33.56 3.18
22 23 4.647611 ACTTGGTCATGTTTGATTCCGTA 58.352 39.130 0.00 0.00 33.56 4.02
23 24 3.486383 ACTTGGTCATGTTTGATTCCGT 58.514 40.909 0.00 0.00 33.56 4.69
24 25 5.818136 ATACTTGGTCATGTTTGATTCCG 57.182 39.130 0.00 0.00 33.56 4.30
25 26 5.807011 GCAATACTTGGTCATGTTTGATTCC 59.193 40.000 0.00 0.00 33.56 3.01
26 27 6.308766 GTGCAATACTTGGTCATGTTTGATTC 59.691 38.462 0.00 0.00 33.56 2.52
27 28 6.158598 GTGCAATACTTGGTCATGTTTGATT 58.841 36.000 0.00 0.35 33.56 2.57
28 29 5.336690 GGTGCAATACTTGGTCATGTTTGAT 60.337 40.000 0.00 0.00 33.56 2.57
29 30 4.022416 GGTGCAATACTTGGTCATGTTTGA 60.022 41.667 0.00 0.00 0.00 2.69
30 31 4.236935 GGTGCAATACTTGGTCATGTTTG 58.763 43.478 0.00 2.75 0.00 2.93
31 32 3.258123 GGGTGCAATACTTGGTCATGTTT 59.742 43.478 0.00 0.00 0.00 2.83
32 33 2.825532 GGGTGCAATACTTGGTCATGTT 59.174 45.455 0.00 0.00 0.00 2.71
33 34 2.446435 GGGTGCAATACTTGGTCATGT 58.554 47.619 0.00 0.00 0.00 3.21
34 35 1.401552 CGGGTGCAATACTTGGTCATG 59.598 52.381 0.00 0.00 0.00 3.07
35 36 1.004277 ACGGGTGCAATACTTGGTCAT 59.996 47.619 0.00 0.00 0.00 3.06
36 37 0.398696 ACGGGTGCAATACTTGGTCA 59.601 50.000 0.00 0.00 0.00 4.02
37 38 2.389962 TACGGGTGCAATACTTGGTC 57.610 50.000 0.00 0.00 0.00 4.02
38 39 4.490899 TTATACGGGTGCAATACTTGGT 57.509 40.909 0.00 0.00 0.00 3.67
39 40 5.821516 TTTTATACGGGTGCAATACTTGG 57.178 39.130 0.00 0.00 0.00 3.61
40 41 7.079182 TCTTTTTATACGGGTGCAATACTTG 57.921 36.000 0.00 0.00 0.00 3.16
41 42 7.875327 ATCTTTTTATACGGGTGCAATACTT 57.125 32.000 0.00 0.00 0.00 2.24
42 43 7.875327 AATCTTTTTATACGGGTGCAATACT 57.125 32.000 0.00 0.00 0.00 2.12
47 48 8.842280 CCTATTTAATCTTTTTATACGGGTGCA 58.158 33.333 0.00 0.00 0.00 4.57
48 49 8.294577 CCCTATTTAATCTTTTTATACGGGTGC 58.705 37.037 0.00 0.00 0.00 5.01
49 50 9.563748 TCCCTATTTAATCTTTTTATACGGGTG 57.436 33.333 0.00 0.00 0.00 4.61
67 68 9.660544 AGATACAATAAAAGCCATTCCCTATTT 57.339 29.630 0.00 0.00 0.00 1.40
68 69 9.082313 CAGATACAATAAAAGCCATTCCCTATT 57.918 33.333 0.00 0.00 0.00 1.73
69 70 7.671398 CCAGATACAATAAAAGCCATTCCCTAT 59.329 37.037 0.00 0.00 0.00 2.57
70 71 7.004086 CCAGATACAATAAAAGCCATTCCCTA 58.996 38.462 0.00 0.00 0.00 3.53
71 72 5.835280 CCAGATACAATAAAAGCCATTCCCT 59.165 40.000 0.00 0.00 0.00 4.20
72 73 5.011023 CCCAGATACAATAAAAGCCATTCCC 59.989 44.000 0.00 0.00 0.00 3.97
73 74 5.011023 CCCCAGATACAATAAAAGCCATTCC 59.989 44.000 0.00 0.00 0.00 3.01
74 75 5.598417 ACCCCAGATACAATAAAAGCCATTC 59.402 40.000 0.00 0.00 0.00 2.67
75 76 5.528337 ACCCCAGATACAATAAAAGCCATT 58.472 37.500 0.00 0.00 0.00 3.16
76 77 5.140454 GACCCCAGATACAATAAAAGCCAT 58.860 41.667 0.00 0.00 0.00 4.40
77 78 4.017958 TGACCCCAGATACAATAAAAGCCA 60.018 41.667 0.00 0.00 0.00 4.75
78 79 4.532834 TGACCCCAGATACAATAAAAGCC 58.467 43.478 0.00 0.00 0.00 4.35
79 80 6.377146 TCTTTGACCCCAGATACAATAAAAGC 59.623 38.462 0.00 0.00 0.00 3.51
80 81 7.938140 TCTTTGACCCCAGATACAATAAAAG 57.062 36.000 0.00 0.00 0.00 2.27
81 82 8.893563 AATCTTTGACCCCAGATACAATAAAA 57.106 30.769 0.00 0.00 0.00 1.52
82 83 8.893563 AAATCTTTGACCCCAGATACAATAAA 57.106 30.769 0.00 0.00 0.00 1.40
83 84 7.559897 GGAAATCTTTGACCCCAGATACAATAA 59.440 37.037 0.00 0.00 0.00 1.40
84 85 7.060421 GGAAATCTTTGACCCCAGATACAATA 58.940 38.462 0.00 0.00 0.00 1.90
85 86 5.893824 GGAAATCTTTGACCCCAGATACAAT 59.106 40.000 0.00 0.00 0.00 2.71
86 87 5.261216 GGAAATCTTTGACCCCAGATACAA 58.739 41.667 0.00 0.00 0.00 2.41
87 88 4.325030 GGGAAATCTTTGACCCCAGATACA 60.325 45.833 0.00 0.00 37.04 2.29
88 89 4.207955 GGGAAATCTTTGACCCCAGATAC 58.792 47.826 0.00 0.00 37.04 2.24
89 90 3.855599 TGGGAAATCTTTGACCCCAGATA 59.144 43.478 0.00 0.00 41.78 1.98
90 91 2.654385 TGGGAAATCTTTGACCCCAGAT 59.346 45.455 0.00 0.00 41.78 2.90
91 92 2.069775 TGGGAAATCTTTGACCCCAGA 58.930 47.619 0.00 0.00 41.78 3.86
92 93 2.603075 TGGGAAATCTTTGACCCCAG 57.397 50.000 0.00 0.00 41.78 4.45
93 94 3.336509 TTTGGGAAATCTTTGACCCCA 57.663 42.857 0.00 0.00 44.69 4.96
94 95 4.698201 TTTTTGGGAAATCTTTGACCCC 57.302 40.909 0.00 0.00 41.44 4.95
115 116 9.429359 GCATGAATAGTACTTGTATCTAGCATT 57.571 33.333 0.00 0.00 0.00 3.56
116 117 8.811017 AGCATGAATAGTACTTGTATCTAGCAT 58.189 33.333 0.00 0.00 0.00 3.79
117 118 8.183104 AGCATGAATAGTACTTGTATCTAGCA 57.817 34.615 0.00 0.00 0.00 3.49
158 159 9.435688 GTTGACTTCAGGGCAAAATAAATAAAT 57.564 29.630 0.00 0.00 45.57 1.40
159 160 7.596995 CGTTGACTTCAGGGCAAAATAAATAAA 59.403 33.333 0.00 0.00 45.57 1.40
160 161 7.040340 TCGTTGACTTCAGGGCAAAATAAATAA 60.040 33.333 0.00 0.00 45.57 1.40
161 162 6.431543 TCGTTGACTTCAGGGCAAAATAAATA 59.568 34.615 0.00 0.00 45.57 1.40
162 163 5.242838 TCGTTGACTTCAGGGCAAAATAAAT 59.757 36.000 0.00 0.00 45.57 1.40
163 164 4.580995 TCGTTGACTTCAGGGCAAAATAAA 59.419 37.500 0.00 0.00 45.57 1.40
164 165 4.138290 TCGTTGACTTCAGGGCAAAATAA 58.862 39.130 0.00 0.00 45.57 1.40
165 166 3.745799 TCGTTGACTTCAGGGCAAAATA 58.254 40.909 0.00 0.00 45.57 1.40
166 167 2.554032 CTCGTTGACTTCAGGGCAAAAT 59.446 45.455 0.00 0.00 45.57 1.82
167 168 1.946768 CTCGTTGACTTCAGGGCAAAA 59.053 47.619 0.00 0.00 45.57 2.44
168 169 1.134220 ACTCGTTGACTTCAGGGCAAA 60.134 47.619 0.00 0.00 45.57 3.68
169 170 0.468226 ACTCGTTGACTTCAGGGCAA 59.532 50.000 0.00 0.00 41.27 4.52
170 171 1.000506 GTACTCGTTGACTTCAGGGCA 59.999 52.381 0.00 0.00 0.00 5.36
171 172 1.000506 TGTACTCGTTGACTTCAGGGC 59.999 52.381 0.00 0.00 0.00 5.19
172 173 3.380479 TTGTACTCGTTGACTTCAGGG 57.620 47.619 0.00 0.00 0.00 4.45
173 174 4.863131 GGTATTGTACTCGTTGACTTCAGG 59.137 45.833 0.00 0.00 0.00 3.86
174 175 5.710984 AGGTATTGTACTCGTTGACTTCAG 58.289 41.667 0.00 0.00 0.00 3.02
175 176 5.717078 AGGTATTGTACTCGTTGACTTCA 57.283 39.130 0.00 0.00 0.00 3.02
176 177 5.347907 CCAAGGTATTGTACTCGTTGACTTC 59.652 44.000 0.00 0.00 34.39 3.01
177 178 5.235516 CCAAGGTATTGTACTCGTTGACTT 58.764 41.667 0.00 0.00 34.39 3.01
178 179 4.817517 CCAAGGTATTGTACTCGTTGACT 58.182 43.478 0.00 0.00 34.39 3.41
179 180 3.370061 GCCAAGGTATTGTACTCGTTGAC 59.630 47.826 0.00 0.00 34.39 3.18
180 181 3.592059 GCCAAGGTATTGTACTCGTTGA 58.408 45.455 0.00 0.00 34.39 3.18
181 182 2.676342 GGCCAAGGTATTGTACTCGTTG 59.324 50.000 0.00 1.33 34.39 4.10
182 183 2.303600 TGGCCAAGGTATTGTACTCGTT 59.696 45.455 0.61 0.00 34.39 3.85
183 184 1.903860 TGGCCAAGGTATTGTACTCGT 59.096 47.619 0.61 0.00 34.39 4.18
184 185 2.684001 TGGCCAAGGTATTGTACTCG 57.316 50.000 0.61 0.00 34.39 4.18
185 186 4.332828 AGTTTGGCCAAGGTATTGTACTC 58.667 43.478 19.48 0.00 34.39 2.59
186 187 4.382386 AGTTTGGCCAAGGTATTGTACT 57.618 40.909 19.48 13.57 34.39 2.73
187 188 5.462530 AAAGTTTGGCCAAGGTATTGTAC 57.537 39.130 19.48 11.34 34.39 2.90
188 189 6.487299 AAAAAGTTTGGCCAAGGTATTGTA 57.513 33.333 19.48 0.00 34.39 2.41
189 190 5.366482 AAAAAGTTTGGCCAAGGTATTGT 57.634 34.783 19.48 5.34 34.39 2.71
190 191 9.097257 CATATAAAAAGTTTGGCCAAGGTATTG 57.903 33.333 19.48 4.14 36.09 1.90
191 192 9.041354 TCATATAAAAAGTTTGGCCAAGGTATT 57.959 29.630 19.48 13.38 0.00 1.89
192 193 8.602472 TCATATAAAAAGTTTGGCCAAGGTAT 57.398 30.769 19.48 12.56 0.00 2.73
193 194 7.672239 ACTCATATAAAAAGTTTGGCCAAGGTA 59.328 33.333 19.48 0.21 0.00 3.08
194 195 6.496911 ACTCATATAAAAAGTTTGGCCAAGGT 59.503 34.615 19.48 7.08 0.00 3.50
195 196 6.935167 ACTCATATAAAAAGTTTGGCCAAGG 58.065 36.000 19.48 0.00 0.00 3.61
196 197 8.519526 TGTACTCATATAAAAAGTTTGGCCAAG 58.480 33.333 19.48 3.89 0.00 3.61
197 198 8.410673 TGTACTCATATAAAAAGTTTGGCCAA 57.589 30.769 16.05 16.05 0.00 4.52
198 199 8.410673 TTGTACTCATATAAAAAGTTTGGCCA 57.589 30.769 0.00 0.00 0.00 5.36
316 317 0.105039 GGATTAGGAGCACTCGGGTG 59.895 60.000 12.23 12.23 45.53 4.61
317 318 1.392710 CGGATTAGGAGCACTCGGGT 61.393 60.000 0.00 0.00 0.00 5.28
318 319 1.364171 CGGATTAGGAGCACTCGGG 59.636 63.158 0.00 0.00 0.00 5.14
319 320 1.300233 GCGGATTAGGAGCACTCGG 60.300 63.158 0.00 0.00 0.00 4.63
320 321 0.103208 AAGCGGATTAGGAGCACTCG 59.897 55.000 0.00 0.00 0.00 4.18
321 322 1.539280 GGAAGCGGATTAGGAGCACTC 60.539 57.143 0.00 0.00 0.00 3.51
322 323 0.466124 GGAAGCGGATTAGGAGCACT 59.534 55.000 0.00 0.00 0.00 4.40
323 324 0.533085 GGGAAGCGGATTAGGAGCAC 60.533 60.000 0.00 0.00 0.00 4.40
324 325 0.980754 TGGGAAGCGGATTAGGAGCA 60.981 55.000 0.00 0.00 0.00 4.26
325 326 0.398318 ATGGGAAGCGGATTAGGAGC 59.602 55.000 0.00 0.00 0.00 4.70
326 327 2.498167 CAATGGGAAGCGGATTAGGAG 58.502 52.381 0.00 0.00 0.00 3.69
327 328 1.142870 CCAATGGGAAGCGGATTAGGA 59.857 52.381 0.00 0.00 35.59 2.94
328 329 1.609208 CCAATGGGAAGCGGATTAGG 58.391 55.000 0.00 0.00 35.59 2.69
329 330 0.954452 GCCAATGGGAAGCGGATTAG 59.046 55.000 0.00 0.00 35.59 1.73
330 331 0.257328 TGCCAATGGGAAGCGGATTA 59.743 50.000 0.00 0.00 35.59 1.75
331 332 0.397535 ATGCCAATGGGAAGCGGATT 60.398 50.000 0.00 0.00 35.59 3.01
332 333 1.111116 CATGCCAATGGGAAGCGGAT 61.111 55.000 0.00 0.00 35.59 4.18
333 334 1.753848 CATGCCAATGGGAAGCGGA 60.754 57.895 0.00 0.00 35.59 5.54
334 335 1.606885 AACATGCCAATGGGAAGCGG 61.607 55.000 0.00 0.00 38.19 5.52
335 336 1.102154 TAACATGCCAATGGGAAGCG 58.898 50.000 0.00 0.00 38.19 4.68
336 337 2.102578 AGTAACATGCCAATGGGAAGC 58.897 47.619 0.00 0.00 38.19 3.86
337 338 4.526970 AGTAGTAACATGCCAATGGGAAG 58.473 43.478 0.00 0.00 38.19 3.46
338 339 4.584638 AGTAGTAACATGCCAATGGGAA 57.415 40.909 0.00 0.00 38.19 3.97
339 340 4.584638 AAGTAGTAACATGCCAATGGGA 57.415 40.909 0.00 0.00 38.19 4.37
340 341 6.321181 ACATAAAGTAGTAACATGCCAATGGG 59.679 38.462 0.00 0.00 38.19 4.00
341 342 7.333528 ACATAAAGTAGTAACATGCCAATGG 57.666 36.000 0.00 0.00 38.19 3.16
342 343 9.716507 GTAACATAAAGTAGTAACATGCCAATG 57.283 33.333 0.00 0.00 39.89 2.82
343 344 9.681062 AGTAACATAAAGTAGTAACATGCCAAT 57.319 29.630 0.00 0.00 0.00 3.16
345 346 9.590451 GTAGTAACATAAAGTAGTAACATGCCA 57.410 33.333 0.00 0.00 0.00 4.92
346 347 9.038803 GGTAGTAACATAAAGTAGTAACATGCC 57.961 37.037 0.00 0.00 0.00 4.40
347 348 9.813446 AGGTAGTAACATAAAGTAGTAACATGC 57.187 33.333 0.00 0.00 0.00 4.06
380 381 9.587772 GTTATCACACATATGTTACTCTTCACT 57.412 33.333 5.37 0.00 36.72 3.41
381 382 9.366216 TGTTATCACACATATGTTACTCTTCAC 57.634 33.333 5.37 0.00 36.72 3.18
390 391 9.013229 AGTGTTTCATGTTATCACACATATGTT 57.987 29.630 5.37 0.00 40.23 2.71
391 392 8.565896 AGTGTTTCATGTTATCACACATATGT 57.434 30.769 1.41 1.41 40.23 2.29
392 393 9.494479 GAAGTGTTTCATGTTATCACACATATG 57.506 33.333 0.00 0.00 40.23 1.78
393 394 9.230122 TGAAGTGTTTCATGTTATCACACATAT 57.770 29.630 13.87 4.61 40.23 1.78
394 395 8.614469 TGAAGTGTTTCATGTTATCACACATA 57.386 30.769 13.87 2.80 40.23 2.29
395 396 7.509141 TGAAGTGTTTCATGTTATCACACAT 57.491 32.000 13.87 6.03 40.23 3.21
396 397 6.934048 TGAAGTGTTTCATGTTATCACACA 57.066 33.333 13.87 10.62 40.23 3.72
419 420 9.883142 GCAAGATGAGTCTATAGCCTAATAAAT 57.117 33.333 0.00 0.00 33.30 1.40
420 421 8.314751 GGCAAGATGAGTCTATAGCCTAATAAA 58.685 37.037 0.00 0.00 40.78 1.40
421 422 7.676043 AGGCAAGATGAGTCTATAGCCTAATAA 59.324 37.037 13.74 0.00 46.63 1.40
422 423 7.185565 AGGCAAGATGAGTCTATAGCCTAATA 58.814 38.462 13.74 0.00 46.63 0.98
423 424 6.022315 AGGCAAGATGAGTCTATAGCCTAAT 58.978 40.000 13.74 0.00 46.63 1.73
424 425 5.398236 AGGCAAGATGAGTCTATAGCCTAA 58.602 41.667 13.74 0.00 46.63 2.69
425 426 5.004361 AGGCAAGATGAGTCTATAGCCTA 57.996 43.478 13.74 0.00 46.63 3.93
426 427 3.855668 AGGCAAGATGAGTCTATAGCCT 58.144 45.455 11.05 11.05 45.15 4.58
427 428 4.039730 TGAAGGCAAGATGAGTCTATAGCC 59.960 45.833 0.00 0.00 42.62 3.93
428 429 5.207110 TGAAGGCAAGATGAGTCTATAGC 57.793 43.478 0.00 0.00 33.30 2.97
429 430 8.530311 ACATATGAAGGCAAGATGAGTCTATAG 58.470 37.037 10.38 0.00 33.30 1.31
430 431 8.309656 CACATATGAAGGCAAGATGAGTCTATA 58.690 37.037 10.38 0.00 33.30 1.31
431 432 7.160049 CACATATGAAGGCAAGATGAGTCTAT 58.840 38.462 10.38 0.00 33.30 1.98
432 433 6.098838 ACACATATGAAGGCAAGATGAGTCTA 59.901 38.462 10.38 0.00 33.30 2.59
433 434 5.104610 ACACATATGAAGGCAAGATGAGTCT 60.105 40.000 10.38 0.00 35.82 3.24
434 435 5.007430 CACACATATGAAGGCAAGATGAGTC 59.993 44.000 10.38 0.00 29.34 3.36
435 436 4.880120 CACACATATGAAGGCAAGATGAGT 59.120 41.667 10.38 0.00 30.77 3.41
436 437 5.121105 TCACACATATGAAGGCAAGATGAG 58.879 41.667 10.38 0.00 0.00 2.90
437 438 5.101648 TCACACATATGAAGGCAAGATGA 57.898 39.130 10.38 0.00 0.00 2.92
438 439 5.298527 ACATCACACATATGAAGGCAAGATG 59.701 40.000 10.38 13.42 36.24 2.90
439 440 5.443283 ACATCACACATATGAAGGCAAGAT 58.557 37.500 10.38 0.46 30.82 2.40
440 441 4.847198 ACATCACACATATGAAGGCAAGA 58.153 39.130 10.38 0.00 30.82 3.02
441 442 5.571784 AACATCACACATATGAAGGCAAG 57.428 39.130 10.38 0.00 30.82 4.01
442 443 5.356751 GGTAACATCACACATATGAAGGCAA 59.643 40.000 10.38 0.00 30.82 4.52
443 444 4.881273 GGTAACATCACACATATGAAGGCA 59.119 41.667 10.38 0.00 30.82 4.75
444 445 4.275936 GGGTAACATCACACATATGAAGGC 59.724 45.833 10.38 0.00 39.74 4.35
445 446 5.296780 GTGGGTAACATCACACATATGAAGG 59.703 44.000 10.38 1.01 40.94 3.46
446 447 5.879777 TGTGGGTAACATCACACATATGAAG 59.120 40.000 10.38 4.05 45.19 3.02
447 448 5.810095 TGTGGGTAACATCACACATATGAA 58.190 37.500 10.38 0.00 45.19 2.57
448 449 5.428184 TGTGGGTAACATCACACATATGA 57.572 39.130 10.38 0.00 45.19 2.15
455 456 2.844946 CACTGTGTGGGTAACATCACA 58.155 47.619 0.00 6.98 44.88 3.58
467 468 2.281070 AAGCTCCGCCACTGTGTG 60.281 61.111 7.08 0.00 0.00 3.82
468 469 2.281070 CAAGCTCCGCCACTGTGT 60.281 61.111 7.08 0.00 0.00 3.72
469 470 3.730761 GCAAGCTCCGCCACTGTG 61.731 66.667 0.00 0.00 0.00 3.66
470 471 4.254709 TGCAAGCTCCGCCACTGT 62.255 61.111 5.69 0.00 0.00 3.55
471 472 3.429141 CTGCAAGCTCCGCCACTG 61.429 66.667 5.69 0.00 0.00 3.66
482 483 1.733389 CGCCCAGTAATTTGCTGCAAG 60.733 52.381 15.39 2.71 32.93 4.01
483 484 0.243365 CGCCCAGTAATTTGCTGCAA 59.757 50.000 11.69 11.69 32.93 4.08
484 485 1.594194 CCGCCCAGTAATTTGCTGCA 61.594 55.000 8.80 0.00 32.93 4.41
485 486 1.139520 CCGCCCAGTAATTTGCTGC 59.860 57.895 8.80 0.00 32.93 5.25
486 487 1.666209 CCCCGCCCAGTAATTTGCTG 61.666 60.000 7.45 7.45 0.00 4.41
487 488 1.379843 CCCCGCCCAGTAATTTGCT 60.380 57.895 0.00 0.00 0.00 3.91
488 489 1.680989 ACCCCGCCCAGTAATTTGC 60.681 57.895 0.00 0.00 0.00 3.68
489 490 1.319614 CCACCCCGCCCAGTAATTTG 61.320 60.000 0.00 0.00 0.00 2.32
490 491 1.000145 CCACCCCGCCCAGTAATTT 60.000 57.895 0.00 0.00 0.00 1.82
491 492 2.680965 CCACCCCGCCCAGTAATT 59.319 61.111 0.00 0.00 0.00 1.40
492 493 4.123545 GCCACCCCGCCCAGTAAT 62.124 66.667 0.00 0.00 0.00 1.89
509 510 2.825861 ATTTCTTGCAGTTTGGCCTG 57.174 45.000 3.32 0.00 35.49 4.85
510 511 3.259123 CCTAATTTCTTGCAGTTTGGCCT 59.741 43.478 3.32 0.00 0.00 5.19
511 512 3.258123 TCCTAATTTCTTGCAGTTTGGCC 59.742 43.478 0.00 0.00 0.00 5.36
512 513 4.519540 TCCTAATTTCTTGCAGTTTGGC 57.480 40.909 0.00 0.00 0.00 4.52
513 514 6.101997 GGAATCCTAATTTCTTGCAGTTTGG 58.898 40.000 0.00 0.00 0.00 3.28
514 515 6.071165 AGGGAATCCTAATTTCTTGCAGTTTG 60.071 38.462 0.00 0.00 42.75 2.93
515 516 6.019108 AGGGAATCCTAATTTCTTGCAGTTT 58.981 36.000 0.00 0.00 42.75 2.66
516 517 5.583932 AGGGAATCCTAATTTCTTGCAGTT 58.416 37.500 0.00 0.00 42.75 3.16
517 518 5.196695 GAGGGAATCCTAATTTCTTGCAGT 58.803 41.667 0.00 0.00 45.05 4.40
518 519 4.274459 CGAGGGAATCCTAATTTCTTGCAG 59.726 45.833 0.00 0.00 45.05 4.41
519 520 4.199310 CGAGGGAATCCTAATTTCTTGCA 58.801 43.478 0.00 0.00 45.05 4.08
520 521 3.565902 CCGAGGGAATCCTAATTTCTTGC 59.434 47.826 0.00 0.00 45.05 4.01
521 522 4.816925 GTCCGAGGGAATCCTAATTTCTTG 59.183 45.833 0.00 0.00 45.05 3.02
522 523 4.141459 GGTCCGAGGGAATCCTAATTTCTT 60.141 45.833 0.00 0.00 45.05 2.52
523 524 3.391626 GGTCCGAGGGAATCCTAATTTCT 59.608 47.826 0.00 0.00 45.05 2.52
524 525 3.135895 TGGTCCGAGGGAATCCTAATTTC 59.864 47.826 0.00 0.00 45.05 2.17
525 526 3.120108 TGGTCCGAGGGAATCCTAATTT 58.880 45.455 0.00 0.00 45.05 1.82
526 527 2.771688 TGGTCCGAGGGAATCCTAATT 58.228 47.619 0.00 0.00 45.05 1.40
527 528 2.489528 TGGTCCGAGGGAATCCTAAT 57.510 50.000 0.00 0.00 45.05 1.73
528 529 2.047061 CATGGTCCGAGGGAATCCTAA 58.953 52.381 0.00 0.00 45.05 2.69
529 530 1.717032 CATGGTCCGAGGGAATCCTA 58.283 55.000 0.00 0.00 45.05 2.94
531 532 1.451936 CCATGGTCCGAGGGAATCC 59.548 63.158 2.57 0.00 31.38 3.01
532 533 1.451936 CCCATGGTCCGAGGGAATC 59.548 63.158 11.73 0.00 45.80 2.52
533 534 2.757124 GCCCATGGTCCGAGGGAAT 61.757 63.158 20.00 0.00 45.80 3.01
534 535 3.407967 GCCCATGGTCCGAGGGAA 61.408 66.667 20.00 0.00 45.80 3.97
535 536 4.414956 AGCCCATGGTCCGAGGGA 62.415 66.667 20.00 0.00 45.80 4.20
536 537 4.181010 CAGCCCATGGTCCGAGGG 62.181 72.222 11.73 13.03 45.68 4.30
537 538 4.181010 CCAGCCCATGGTCCGAGG 62.181 72.222 11.73 5.53 44.91 4.63
545 546 1.980765 TCCTATTAGAGCCAGCCCATG 59.019 52.381 0.00 0.00 0.00 3.66
546 547 2.264455 CTCCTATTAGAGCCAGCCCAT 58.736 52.381 0.00 0.00 0.00 4.00
547 548 1.722034 CTCCTATTAGAGCCAGCCCA 58.278 55.000 0.00 0.00 0.00 5.36
555 556 1.000283 CTGCACCCGCTCCTATTAGAG 60.000 57.143 0.00 0.00 39.64 2.43
556 557 1.040646 CTGCACCCGCTCCTATTAGA 58.959 55.000 0.00 0.00 39.64 2.10
557 558 0.601311 GCTGCACCCGCTCCTATTAG 60.601 60.000 0.00 0.00 39.64 1.73
558 559 1.334384 TGCTGCACCCGCTCCTATTA 61.334 55.000 0.00 0.00 39.64 0.98
559 560 2.190578 GCTGCACCCGCTCCTATT 59.809 61.111 0.00 0.00 39.64 1.73
560 561 2.196997 TTTGCTGCACCCGCTCCTAT 62.197 55.000 0.00 0.00 39.64 2.57
561 562 2.803155 CTTTGCTGCACCCGCTCCTA 62.803 60.000 0.00 0.00 39.64 2.94
562 563 4.269523 TTTGCTGCACCCGCTCCT 62.270 61.111 0.00 0.00 39.64 3.69
563 564 3.741476 CTTTGCTGCACCCGCTCC 61.741 66.667 0.00 0.00 39.64 4.70
564 565 4.410743 GCTTTGCTGCACCCGCTC 62.411 66.667 0.00 0.00 39.64 5.03
565 566 4.962836 AGCTTTGCTGCACCCGCT 62.963 61.111 0.00 7.78 37.57 5.52
595 596 1.135286 GCTTCAACAAGGCTACATGGC 60.135 52.381 0.00 0.00 42.15 4.40
596 597 2.421424 GAGCTTCAACAAGGCTACATGG 59.579 50.000 0.00 0.00 36.37 3.66
597 598 2.421424 GGAGCTTCAACAAGGCTACATG 59.579 50.000 0.00 0.00 36.95 3.21
598 599 2.716217 GGAGCTTCAACAAGGCTACAT 58.284 47.619 0.00 0.00 36.95 2.29
599 600 1.608025 CGGAGCTTCAACAAGGCTACA 60.608 52.381 0.00 0.00 36.79 2.74
600 601 1.079503 CGGAGCTTCAACAAGGCTAC 58.920 55.000 0.00 0.00 36.37 3.58
601 602 3.532896 CGGAGCTTCAACAAGGCTA 57.467 52.632 0.00 0.00 36.37 3.93
602 603 4.386413 CGGAGCTTCAACAAGGCT 57.614 55.556 0.00 0.00 39.16 4.58
702 703 9.474313 ACTACCCACAATGAAAATAACATATGT 57.526 29.630 1.41 1.41 0.00 2.29
703 704 9.734620 CACTACCCACAATGAAAATAACATATG 57.265 33.333 0.00 0.00 0.00 1.78
704 705 9.474313 ACACTACCCACAATGAAAATAACATAT 57.526 29.630 0.00 0.00 0.00 1.78
705 706 8.871629 ACACTACCCACAATGAAAATAACATA 57.128 30.769 0.00 0.00 0.00 2.29
706 707 7.775053 ACACTACCCACAATGAAAATAACAT 57.225 32.000 0.00 0.00 0.00 2.71
707 708 8.693120 TTACACTACCCACAATGAAAATAACA 57.307 30.769 0.00 0.00 0.00 2.41
708 709 8.241367 CCTTACACTACCCACAATGAAAATAAC 58.759 37.037 0.00 0.00 0.00 1.89
709 710 8.164733 TCCTTACACTACCCACAATGAAAATAA 58.835 33.333 0.00 0.00 0.00 1.40
710 711 7.691213 TCCTTACACTACCCACAATGAAAATA 58.309 34.615 0.00 0.00 0.00 1.40
711 712 6.548321 TCCTTACACTACCCACAATGAAAAT 58.452 36.000 0.00 0.00 0.00 1.82
712 713 5.942961 TCCTTACACTACCCACAATGAAAA 58.057 37.500 0.00 0.00 0.00 2.29
713 714 5.570205 TCCTTACACTACCCACAATGAAA 57.430 39.130 0.00 0.00 0.00 2.69
714 715 5.570205 TTCCTTACACTACCCACAATGAA 57.430 39.130 0.00 0.00 0.00 2.57
715 716 5.570205 TTTCCTTACACTACCCACAATGA 57.430 39.130 0.00 0.00 0.00 2.57
716 717 5.125417 CCATTTCCTTACACTACCCACAATG 59.875 44.000 0.00 0.00 0.00 2.82
717 718 5.014755 TCCATTTCCTTACACTACCCACAAT 59.985 40.000 0.00 0.00 0.00 2.71
718 719 4.351407 TCCATTTCCTTACACTACCCACAA 59.649 41.667 0.00 0.00 0.00 3.33
719 720 3.911260 TCCATTTCCTTACACTACCCACA 59.089 43.478 0.00 0.00 0.00 4.17
720 721 4.514401 CTCCATTTCCTTACACTACCCAC 58.486 47.826 0.00 0.00 0.00 4.61
721 722 3.521937 CCTCCATTTCCTTACACTACCCA 59.478 47.826 0.00 0.00 0.00 4.51
722 723 3.118000 CCCTCCATTTCCTTACACTACCC 60.118 52.174 0.00 0.00 0.00 3.69
723 724 3.778629 TCCCTCCATTTCCTTACACTACC 59.221 47.826 0.00 0.00 0.00 3.18
724 725 4.470304 ACTCCCTCCATTTCCTTACACTAC 59.530 45.833 0.00 0.00 0.00 2.73
725 726 4.695606 ACTCCCTCCATTTCCTTACACTA 58.304 43.478 0.00 0.00 0.00 2.74
726 727 3.532102 ACTCCCTCCATTTCCTTACACT 58.468 45.455 0.00 0.00 0.00 3.55
727 728 5.045797 AGTTACTCCCTCCATTTCCTTACAC 60.046 44.000 0.00 0.00 0.00 2.90
728 729 5.098663 AGTTACTCCCTCCATTTCCTTACA 58.901 41.667 0.00 0.00 0.00 2.41
729 730 5.695424 AGTTACTCCCTCCATTTCCTTAC 57.305 43.478 0.00 0.00 0.00 2.34
730 731 6.030082 AGAAGTTACTCCCTCCATTTCCTTA 58.970 40.000 0.00 0.00 0.00 2.69
731 732 4.852697 AGAAGTTACTCCCTCCATTTCCTT 59.147 41.667 0.00 0.00 0.00 3.36
732 733 4.439860 AGAAGTTACTCCCTCCATTTCCT 58.560 43.478 0.00 0.00 0.00 3.36
733 734 4.846168 AGAAGTTACTCCCTCCATTTCC 57.154 45.455 0.00 0.00 0.00 3.13
734 735 7.339482 ACATAAGAAGTTACTCCCTCCATTTC 58.661 38.462 0.00 0.00 0.00 2.17
735 736 7.272144 ACATAAGAAGTTACTCCCTCCATTT 57.728 36.000 0.00 0.00 0.00 2.32
736 737 6.893020 ACATAAGAAGTTACTCCCTCCATT 57.107 37.500 0.00 0.00 0.00 3.16
737 738 7.070074 CAGTACATAAGAAGTTACTCCCTCCAT 59.930 40.741 0.00 0.00 0.00 3.41
738 739 6.380274 CAGTACATAAGAAGTTACTCCCTCCA 59.620 42.308 0.00 0.00 0.00 3.86
739 740 6.606395 TCAGTACATAAGAAGTTACTCCCTCC 59.394 42.308 0.00 0.00 0.00 4.30
740 741 7.556996 TCTCAGTACATAAGAAGTTACTCCCTC 59.443 40.741 0.00 0.00 0.00 4.30
741 742 7.411808 TCTCAGTACATAAGAAGTTACTCCCT 58.588 38.462 0.00 0.00 0.00 4.20
742 743 7.642082 TCTCAGTACATAAGAAGTTACTCCC 57.358 40.000 0.00 0.00 0.00 4.30
743 744 8.138712 CCATCTCAGTACATAAGAAGTTACTCC 58.861 40.741 0.00 0.00 0.00 3.85
744 745 8.688151 ACCATCTCAGTACATAAGAAGTTACTC 58.312 37.037 0.00 0.00 0.00 2.59
745 746 8.596781 ACCATCTCAGTACATAAGAAGTTACT 57.403 34.615 0.00 0.00 0.00 2.24
749 750 8.784994 CGTATACCATCTCAGTACATAAGAAGT 58.215 37.037 0.00 0.55 0.00 3.01
750 751 8.237949 CCGTATACCATCTCAGTACATAAGAAG 58.762 40.741 0.00 0.00 0.00 2.85
751 752 7.722728 ACCGTATACCATCTCAGTACATAAGAA 59.277 37.037 0.00 0.00 0.00 2.52
752 753 7.229308 ACCGTATACCATCTCAGTACATAAGA 58.771 38.462 0.00 0.00 0.00 2.10
753 754 7.450124 ACCGTATACCATCTCAGTACATAAG 57.550 40.000 0.00 0.00 0.00 1.73
820 821 9.549509 CAAATTAAACGTTGCTGCTTTAGTATA 57.450 29.630 0.00 0.00 0.00 1.47
821 822 7.540745 CCAAATTAAACGTTGCTGCTTTAGTAT 59.459 33.333 0.00 0.00 0.00 2.12
822 823 6.858993 CCAAATTAAACGTTGCTGCTTTAGTA 59.141 34.615 0.00 0.00 0.00 1.82
823 824 5.689961 CCAAATTAAACGTTGCTGCTTTAGT 59.310 36.000 0.00 0.00 0.00 2.24
824 825 5.918011 TCCAAATTAAACGTTGCTGCTTTAG 59.082 36.000 0.00 0.00 0.00 1.85
825 826 5.833082 TCCAAATTAAACGTTGCTGCTTTA 58.167 33.333 0.00 0.00 0.00 1.85
826 827 4.688021 TCCAAATTAAACGTTGCTGCTTT 58.312 34.783 0.00 0.00 0.00 3.51
827 828 4.314740 TCCAAATTAAACGTTGCTGCTT 57.685 36.364 0.00 0.00 0.00 3.91
828 829 4.048504 GTTCCAAATTAAACGTTGCTGCT 58.951 39.130 0.00 0.00 0.00 4.24
829 830 3.121496 CGTTCCAAATTAAACGTTGCTGC 60.121 43.478 0.00 0.00 42.37 5.25
830 831 3.423867 CCGTTCCAAATTAAACGTTGCTG 59.576 43.478 0.00 0.00 45.03 4.41
831 832 3.315749 TCCGTTCCAAATTAAACGTTGCT 59.684 39.130 0.00 0.00 45.03 3.91
832 833 3.630101 TCCGTTCCAAATTAAACGTTGC 58.370 40.909 0.00 0.00 45.03 4.17
833 834 5.049954 TCTCTCCGTTCCAAATTAAACGTTG 60.050 40.000 0.00 9.84 45.03 4.10
834 835 5.058490 TCTCTCCGTTCCAAATTAAACGTT 58.942 37.500 15.28 0.00 45.03 3.99
857 858 6.015010 ACGGTAGTAGATGAGTATACGGTACT 60.015 42.308 2.81 2.81 30.91 2.73
863 864 6.873076 AGTAGCACGGTAGTAGATGAGTATAC 59.127 42.308 0.00 0.00 0.00 1.47
871 872 3.117963 AGACCAGTAGCACGGTAGTAGAT 60.118 47.826 0.00 0.00 34.99 1.98
872 873 2.238144 AGACCAGTAGCACGGTAGTAGA 59.762 50.000 0.00 0.00 34.99 2.59
924 925 1.790755 TTGATTTGTGACCGGACGAG 58.209 50.000 9.46 0.00 0.00 4.18
946 947 3.181461 CCCTTCTGTATGTGGATCTGGAC 60.181 52.174 0.00 0.00 0.00 4.02
947 948 3.041211 CCCTTCTGTATGTGGATCTGGA 58.959 50.000 0.00 0.00 0.00 3.86
963 964 1.880340 CGCTGCTGACGATCCCTTC 60.880 63.158 0.00 0.00 0.00 3.46
980 981 1.736586 CCCAGCTGCTCCTACTACG 59.263 63.158 8.66 0.00 0.00 3.51
1005 1007 1.794714 GAGCTAATCCTGGGGAGTCA 58.205 55.000 0.00 0.00 34.05 3.41
1077 1079 3.532155 GATGCGGCGGAGGAGAGT 61.532 66.667 9.78 0.00 0.00 3.24
1216 1224 0.320421 TGAAGTACGGTGAGGCTTGC 60.320 55.000 0.00 0.00 0.00 4.01
1232 1240 2.091885 AGGAACCAAGAAAGCCAGTGAA 60.092 45.455 0.00 0.00 0.00 3.18
1238 1246 1.605753 ACGAAGGAACCAAGAAAGCC 58.394 50.000 0.00 0.00 0.00 4.35
1252 1263 6.821665 TCAAGGGGACTGAATTAATAACGAAG 59.178 38.462 0.00 0.00 42.68 3.79
1272 1287 2.923426 TTAGCTGGCGCGGATCAAGG 62.923 60.000 8.83 0.00 42.32 3.61
1281 1296 0.029433 GTATTTGGCTTAGCTGGCGC 59.971 55.000 3.59 0.00 35.06 6.53
1311 1326 0.098376 CTAGAGTCCCGCGTGTGTAC 59.902 60.000 4.92 0.00 0.00 2.90
1427 1442 1.080093 GAAGGCGACGGACATGTCA 60.080 57.895 26.47 0.00 38.84 3.58
1481 1496 1.449601 CACCCTCGCCGTTATGCTT 60.450 57.895 0.00 0.00 0.00 3.91
1552 1567 2.431771 CGACGACATTGCCGGTGA 60.432 61.111 1.90 0.00 0.00 4.02
1595 1610 0.954452 GTGGTGCCTTCTTCAGGTTG 59.046 55.000 0.00 0.00 46.07 3.77
1656 1674 2.435372 AGGAGTAGGCAGAGTCAGAG 57.565 55.000 0.00 0.00 0.00 3.35
1661 1679 1.923850 TGGAGTAGGAGTAGGCAGAGT 59.076 52.381 0.00 0.00 0.00 3.24
1686 4345 5.360591 AGGAAAGAAGGTGCATAATAGACG 58.639 41.667 0.00 0.00 0.00 4.18
1699 4358 3.696548 GAGTGGCCATTTAGGAAAGAAGG 59.303 47.826 9.72 0.00 41.22 3.46
1792 4457 6.119536 GGATTCAGTACACAACATATTCCCA 58.880 40.000 0.00 0.00 0.00 4.37
2076 4833 4.582656 ACTGGTGAGCACTAGAGCTTATAG 59.417 45.833 16.14 15.16 46.75 1.31
2077 4834 4.339530 CACTGGTGAGCACTAGAGCTTATA 59.660 45.833 16.14 5.16 46.75 0.98
2079 4836 2.493675 CACTGGTGAGCACTAGAGCTTA 59.506 50.000 16.14 9.36 46.75 3.09
2083 4868 2.094803 CAGACACTGGTGAGCACTAGAG 60.095 54.545 18.94 13.89 41.75 2.43
2122 4907 5.592282 TCTTCCTTGCAATGTTACAACTGAA 59.408 36.000 0.00 0.00 0.00 3.02
2129 4914 5.412594 TCAGTCATCTTCCTTGCAATGTTAC 59.587 40.000 0.00 0.00 0.00 2.50
2151 4936 4.283212 TGTAGATGATGTCCTGTGTTGTCA 59.717 41.667 0.00 0.00 0.00 3.58
2188 4973 2.288395 GCAATAAGCACACTGCCTTTGT 60.288 45.455 0.00 0.00 46.52 2.83
2223 5008 2.297701 GTTGATGGTGTCCTGTGTTGT 58.702 47.619 0.00 0.00 0.00 3.32
2243 5028 9.079833 CAATGTCTTTGCTTGGTATTCTAATTG 57.920 33.333 0.00 0.00 0.00 2.32
2252 5037 3.243704 GGCAACAATGTCTTTGCTTGGTA 60.244 43.478 8.23 0.00 46.11 3.25
2285 5070 4.172505 CTGCAGTAGATCTTGTCTGTGAC 58.827 47.826 5.25 0.00 37.83 3.67
2347 5135 3.017442 CTGAGGTAGTTCGGAGATGTCA 58.983 50.000 0.00 0.00 35.04 3.58
2430 5218 5.897050 TGTGGTACAAAGGACAAATTTGAC 58.103 37.500 24.64 17.82 44.16 3.18
2451 5239 1.491754 ACGTTAACCCTTGGGAGTTGT 59.508 47.619 13.39 1.55 0.00 3.32
2493 5282 0.110419 TACAACAAGAATGTGCGCGC 60.110 50.000 27.26 27.26 40.46 6.86
2494 5283 2.525750 ATACAACAAGAATGTGCGCG 57.474 45.000 0.00 0.00 40.46 6.86
2520 5309 8.717717 AGATGAGATGATATGGGTTTTGTAGAA 58.282 33.333 0.00 0.00 0.00 2.10
2621 5412 4.664139 GCGACTATGTTATGTAAGCATGCG 60.664 45.833 13.01 0.00 36.58 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.