Multiple sequence alignment - TraesCS4A01G178500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G178500 chr4A 100.000 2847 0 0 1 2847 450792887 450795733 0.000000e+00 5258.0
1 TraesCS4A01G178500 chr4A 89.947 189 7 6 2076 2252 85249742 85249930 1.710000e-57 233.0
2 TraesCS4A01G178500 chr4A 88.961 154 11 4 369 518 615201934 615201783 4.840000e-43 185.0
3 TraesCS4A01G178500 chr4A 91.603 131 11 0 2075 2205 26637800 26637670 6.270000e-42 182.0
4 TraesCS4A01G178500 chr4A 88.816 152 12 5 369 518 736486885 736486737 6.270000e-42 182.0
5 TraesCS4A01G178500 chr4D 92.842 1453 54 22 539 1966 119825777 119827204 0.000000e+00 2061.0
6 TraesCS4A01G178500 chr4D 88.918 379 35 6 2444 2815 119827312 119827690 7.190000e-126 460.0
7 TraesCS4A01G178500 chr4D 93.688 301 14 1 61 361 119825492 119825787 2.010000e-121 446.0
8 TraesCS4A01G178500 chr4D 98.551 69 1 0 1 69 119824133 119824201 3.850000e-24 122.0
9 TraesCS4A01G178500 chr4B 93.120 1279 53 14 539 1802 182673970 182675228 0.000000e+00 1842.0
10 TraesCS4A01G178500 chr4B 94.460 361 15 1 1 361 182673625 182673980 4.150000e-153 551.0
11 TraesCS4A01G178500 chr4B 83.858 254 30 10 2577 2820 182675838 182676090 6.130000e-57 231.0
12 TraesCS4A01G178500 chr2A 90.104 192 7 1 2076 2255 528130444 528130253 3.670000e-59 239.0
13 TraesCS4A01G178500 chr2A 95.588 136 6 0 2076 2211 105626646 105626781 4.780000e-53 219.0
14 TraesCS4A01G178500 chr6A 91.925 161 13 0 2092 2252 433958800 433958640 2.850000e-55 226.0
15 TraesCS4A01G178500 chr6A 89.941 169 13 4 361 527 17390521 17390687 6.180000e-52 215.0
16 TraesCS4A01G178500 chr6A 94.118 136 8 0 2076 2211 604259352 604259487 1.030000e-49 207.0
17 TraesCS4A01G178500 chr6A 95.495 111 5 0 2092 2202 397484549 397484439 8.110000e-41 178.0
18 TraesCS4A01G178500 chr6A 100.000 47 0 0 2205 2251 28573032 28573078 1.410000e-13 87.9
19 TraesCS4A01G178500 chr3A 88.889 189 9 1 2076 2252 620206565 620206377 3.690000e-54 222.0
20 TraesCS4A01G178500 chr3A 87.565 193 10 3 2075 2255 1576205 1576395 7.990000e-51 211.0
21 TraesCS4A01G178500 chr5D 81.271 299 21 23 1493 1768 254519334 254519048 2.870000e-50 209.0
22 TraesCS4A01G178500 chr5D 89.873 158 14 2 361 518 530305956 530305801 4.810000e-48 202.0
23 TraesCS4A01G178500 chr5A 81.063 301 21 23 1493 1768 337820298 337820009 1.030000e-49 207.0
24 TraesCS4A01G178500 chr1A 94.118 136 8 0 2076 2211 592650081 592649946 1.030000e-49 207.0
25 TraesCS4A01G178500 chr1A 93.913 115 7 0 2092 2206 589191153 589191039 1.050000e-39 174.0
26 TraesCS4A01G178500 chr5B 80.328 305 22 23 1490 1768 288330017 288330309 2.240000e-46 196.0
27 TraesCS4A01G178500 chr5B 94.253 87 5 0 2360 2446 655073887 655073801 1.780000e-27 134.0
28 TraesCS4A01G178500 chr5B 94.253 87 4 1 2360 2446 526230579 526230664 6.400000e-27 132.0
29 TraesCS4A01G178500 chr5B 94.186 86 4 1 2361 2446 520425813 520425729 2.300000e-26 130.0
30 TraesCS4A01G178500 chr2B 88.024 167 18 2 361 527 10355044 10355208 2.240000e-46 196.0
31 TraesCS4A01G178500 chr2B 88.742 151 14 3 369 518 225229411 225229263 6.270000e-42 182.0
32 TraesCS4A01G178500 chr2B 91.000 100 5 3 2360 2456 1516907 1516809 6.400000e-27 132.0
33 TraesCS4A01G178500 chr1B 90.345 145 11 3 375 518 626584512 626584654 1.350000e-43 187.0
34 TraesCS4A01G178500 chr7A 88.125 160 14 5 369 527 38522281 38522436 4.840000e-43 185.0
35 TraesCS4A01G178500 chr7A 86.471 170 21 2 2074 2243 652284285 652284118 4.840000e-43 185.0
36 TraesCS4A01G178500 chr6B 87.117 163 19 2 357 518 8642054 8641893 1.740000e-42 183.0
37 TraesCS4A01G178500 chr6B 91.000 100 3 5 2360 2455 703412516 703412419 2.300000e-26 130.0
38 TraesCS4A01G178500 chr6B 90.385 104 2 7 2356 2455 703486181 703486082 2.300000e-26 130.0
39 TraesCS4A01G178500 chr7B 92.929 99 4 3 2346 2444 14778922 14779017 1.060000e-29 141.0
40 TraesCS4A01G178500 chrUn 94.505 91 4 1 2356 2446 124676055 124676144 3.820000e-29 139.0
41 TraesCS4A01G178500 chr3B 91.579 95 7 1 2350 2444 43336027 43335934 2.300000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G178500 chr4A 450792887 450795733 2846 False 5258.000000 5258 100.000000 1 2847 1 chr4A.!!$F2 2846
1 TraesCS4A01G178500 chr4D 119824133 119827690 3557 False 772.250000 2061 93.499750 1 2815 4 chr4D.!!$F1 2814
2 TraesCS4A01G178500 chr4B 182673625 182676090 2465 False 874.666667 1842 90.479333 1 2820 3 chr4B.!!$F1 2819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
413 1713 0.034896 ACCTCATCGAACGGCTGTTT 59.965 50.0 13.23 0.0 38.78 2.83 F
870 2171 0.036732 ATGGTGTCATCGCACAAGGT 59.963 50.0 0.00 0.0 40.89 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1419 2756 0.026674 CAACGTGGCATGCATCGTAG 59.973 55.0 29.23 14.07 35.49 3.51 R
2220 3659 0.033366 GGCCCGTCATTTTTGCAGTT 59.967 50.0 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.269958 TGGTCATCAGTCCAGTGAGG 58.730 55.000 0.00 0.00 39.47 3.86
107 1407 0.611618 TTGCGTCCCATGCTTTCCAT 60.612 50.000 0.00 0.00 33.39 3.41
110 1410 1.176527 CGTCCCATGCTTTCCATTGT 58.823 50.000 0.00 0.00 29.71 2.71
113 1413 2.094026 GTCCCATGCTTTCCATTGTTCC 60.094 50.000 0.00 0.00 29.71 3.62
122 1422 4.857037 GCTTTCCATTGTTCCGATTAACAC 59.143 41.667 0.00 0.00 39.02 3.32
140 1440 5.920193 AACACATGATTAGGAATGTTGGG 57.080 39.130 0.00 0.00 34.81 4.12
142 1442 5.579047 ACACATGATTAGGAATGTTGGGAA 58.421 37.500 0.00 0.00 34.81 3.97
198 1498 1.511887 CGGAATCGCGGTTTTGCTG 60.512 57.895 5.86 0.00 0.00 4.41
200 1500 0.239879 GGAATCGCGGTTTTGCTGAA 59.760 50.000 5.86 0.00 0.00 3.02
201 1501 1.327507 GAATCGCGGTTTTGCTGAAC 58.672 50.000 5.86 0.00 0.00 3.18
217 1517 0.884704 GAACGGAGCAAAGTGGCAGA 60.885 55.000 0.00 0.00 35.83 4.26
355 1655 2.082231 CCAACTTGCTCATGTCTCCAG 58.918 52.381 0.00 0.00 0.00 3.86
356 1656 2.551721 CCAACTTGCTCATGTCTCCAGT 60.552 50.000 0.00 0.00 0.00 4.00
357 1657 2.469274 ACTTGCTCATGTCTCCAGTG 57.531 50.000 0.00 0.00 0.00 3.66
358 1658 1.085091 CTTGCTCATGTCTCCAGTGC 58.915 55.000 0.00 0.00 0.00 4.40
359 1659 0.689055 TTGCTCATGTCTCCAGTGCT 59.311 50.000 0.00 0.00 0.00 4.40
360 1660 0.036671 TGCTCATGTCTCCAGTGCTG 60.037 55.000 0.00 0.00 0.00 4.41
374 1674 4.496336 GCTGGATCCGGCTTGCCT 62.496 66.667 34.25 0.00 44.39 4.75
375 1675 2.515523 CTGGATCCGGCTTGCCTG 60.516 66.667 7.89 3.29 0.00 4.85
376 1676 4.802051 TGGATCCGGCTTGCCTGC 62.802 66.667 7.39 0.00 0.00 4.85
377 1677 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
378 1678 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
379 1679 4.496336 ATCCGGCTTGCCTGCTCC 62.496 66.667 10.12 0.00 0.00 4.70
381 1681 4.729918 CCGGCTTGCCTGCTCCTT 62.730 66.667 10.12 0.00 0.00 3.36
382 1682 2.674380 CGGCTTGCCTGCTCCTTT 60.674 61.111 10.12 0.00 0.00 3.11
383 1683 2.694760 CGGCTTGCCTGCTCCTTTC 61.695 63.158 10.12 0.00 0.00 2.62
384 1684 2.346541 GGCTTGCCTGCTCCTTTCC 61.347 63.158 4.11 0.00 0.00 3.13
385 1685 2.346541 GCTTGCCTGCTCCTTTCCC 61.347 63.158 0.00 0.00 0.00 3.97
386 1686 2.034066 TTGCCTGCTCCTTTCCCG 59.966 61.111 0.00 0.00 0.00 5.14
387 1687 2.754664 CTTGCCTGCTCCTTTCCCGT 62.755 60.000 0.00 0.00 0.00 5.28
388 1688 2.747855 GCCTGCTCCTTTCCCGTG 60.748 66.667 0.00 0.00 0.00 4.94
389 1689 2.747855 CCTGCTCCTTTCCCGTGC 60.748 66.667 0.00 0.00 0.00 5.34
390 1690 2.348998 CTGCTCCTTTCCCGTGCT 59.651 61.111 0.00 0.00 0.00 4.40
391 1691 1.743252 CTGCTCCTTTCCCGTGCTC 60.743 63.158 0.00 0.00 0.00 4.26
392 1692 2.436824 GCTCCTTTCCCGTGCTCC 60.437 66.667 0.00 0.00 0.00 4.70
393 1693 2.269241 CTCCTTTCCCGTGCTCCC 59.731 66.667 0.00 0.00 0.00 4.30
394 1694 2.528127 TCCTTTCCCGTGCTCCCA 60.528 61.111 0.00 0.00 0.00 4.37
395 1695 2.359975 CCTTTCCCGTGCTCCCAC 60.360 66.667 0.00 0.00 38.62 4.61
396 1696 2.359975 CTTTCCCGTGCTCCCACC 60.360 66.667 0.00 0.00 38.79 4.61
397 1697 2.852075 TTTCCCGTGCTCCCACCT 60.852 61.111 0.00 0.00 38.79 4.00
398 1698 2.804828 CTTTCCCGTGCTCCCACCTC 62.805 65.000 0.00 0.00 38.79 3.85
399 1699 4.631740 TCCCGTGCTCCCACCTCA 62.632 66.667 0.00 0.00 38.79 3.86
400 1700 3.402681 CCCGTGCTCCCACCTCAT 61.403 66.667 0.00 0.00 38.79 2.90
401 1701 2.187946 CCGTGCTCCCACCTCATC 59.812 66.667 0.00 0.00 38.79 2.92
402 1702 2.202797 CGTGCTCCCACCTCATCG 60.203 66.667 0.00 0.00 38.79 3.84
403 1703 2.710902 CGTGCTCCCACCTCATCGA 61.711 63.158 0.00 0.00 38.79 3.59
404 1704 1.596934 GTGCTCCCACCTCATCGAA 59.403 57.895 0.00 0.00 35.92 3.71
405 1705 0.741221 GTGCTCCCACCTCATCGAAC 60.741 60.000 0.00 0.00 35.92 3.95
406 1706 1.519455 GCTCCCACCTCATCGAACG 60.519 63.158 0.00 0.00 0.00 3.95
407 1707 1.141881 CTCCCACCTCATCGAACGG 59.858 63.158 0.00 0.00 0.00 4.44
408 1708 2.511600 CCCACCTCATCGAACGGC 60.512 66.667 0.00 0.00 0.00 5.68
409 1709 2.579201 CCACCTCATCGAACGGCT 59.421 61.111 0.00 0.00 0.00 5.52
410 1710 1.811266 CCACCTCATCGAACGGCTG 60.811 63.158 0.00 0.00 0.00 4.85
411 1711 1.079819 CACCTCATCGAACGGCTGT 60.080 57.895 0.00 0.00 0.00 4.40
412 1712 0.670546 CACCTCATCGAACGGCTGTT 60.671 55.000 11.62 11.62 42.23 3.16
413 1713 0.034896 ACCTCATCGAACGGCTGTTT 59.965 50.000 13.23 0.00 38.78 2.83
414 1714 1.156736 CCTCATCGAACGGCTGTTTT 58.843 50.000 13.23 0.00 38.78 2.43
415 1715 1.535462 CCTCATCGAACGGCTGTTTTT 59.465 47.619 13.23 0.00 38.78 1.94
451 1751 9.807921 TTTCTTGTTAATATAATCATCTCCCCC 57.192 33.333 0.00 0.00 0.00 5.40
471 1771 2.466846 CCTGATTTTAAAGGGGTGGGG 58.533 52.381 0.00 0.00 0.00 4.96
472 1772 1.831106 CTGATTTTAAAGGGGTGGGGC 59.169 52.381 0.00 0.00 0.00 5.80
473 1773 1.200519 GATTTTAAAGGGGTGGGGCC 58.799 55.000 0.00 0.00 0.00 5.80
474 1774 0.616395 ATTTTAAAGGGGTGGGGCCG 60.616 55.000 0.00 0.00 38.44 6.13
475 1775 2.733475 TTTTAAAGGGGTGGGGCCGG 62.733 60.000 0.00 0.00 38.44 6.13
482 1782 3.094498 GGTGGGGCCGGGTCTTAT 61.094 66.667 2.18 0.00 0.00 1.73
483 1783 2.686572 GGTGGGGCCGGGTCTTATT 61.687 63.158 2.18 0.00 0.00 1.40
484 1784 1.305287 GTGGGGCCGGGTCTTATTT 59.695 57.895 2.18 0.00 0.00 1.40
485 1785 0.323999 GTGGGGCCGGGTCTTATTTT 60.324 55.000 2.18 0.00 0.00 1.82
486 1786 0.323908 TGGGGCCGGGTCTTATTTTG 60.324 55.000 2.18 0.00 0.00 2.44
487 1787 0.323999 GGGGCCGGGTCTTATTTTGT 60.324 55.000 2.18 0.00 0.00 2.83
488 1788 1.552578 GGGCCGGGTCTTATTTTGTT 58.447 50.000 2.18 0.00 0.00 2.83
489 1789 1.475280 GGGCCGGGTCTTATTTTGTTC 59.525 52.381 2.18 0.00 0.00 3.18
490 1790 1.475280 GGCCGGGTCTTATTTTGTTCC 59.525 52.381 2.18 0.00 0.00 3.62
491 1791 2.164338 GCCGGGTCTTATTTTGTTCCA 58.836 47.619 2.18 0.00 0.00 3.53
492 1792 2.559231 GCCGGGTCTTATTTTGTTCCAA 59.441 45.455 2.18 0.00 0.00 3.53
493 1793 3.194755 GCCGGGTCTTATTTTGTTCCAAT 59.805 43.478 2.18 0.00 0.00 3.16
494 1794 4.676986 GCCGGGTCTTATTTTGTTCCAATC 60.677 45.833 2.18 0.00 0.00 2.67
495 1795 4.461081 CCGGGTCTTATTTTGTTCCAATCA 59.539 41.667 0.00 0.00 0.00 2.57
496 1796 5.047660 CCGGGTCTTATTTTGTTCCAATCAA 60.048 40.000 0.00 0.00 0.00 2.57
497 1797 6.451393 CGGGTCTTATTTTGTTCCAATCAAA 58.549 36.000 0.00 0.00 33.76 2.69
498 1798 7.096551 CGGGTCTTATTTTGTTCCAATCAAAT 58.903 34.615 0.00 0.00 35.25 2.32
499 1799 7.275560 CGGGTCTTATTTTGTTCCAATCAAATC 59.724 37.037 0.00 0.00 35.25 2.17
500 1800 8.093927 GGGTCTTATTTTGTTCCAATCAAATCA 58.906 33.333 0.00 0.00 35.25 2.57
501 1801 9.487790 GGTCTTATTTTGTTCCAATCAAATCAA 57.512 29.630 0.00 0.00 35.25 2.57
503 1803 9.206870 TCTTATTTTGTTCCAATCAAATCAAGC 57.793 29.630 0.00 0.00 35.25 4.01
504 1804 6.806388 ATTTTGTTCCAATCAAATCAAGCC 57.194 33.333 0.00 0.00 35.25 4.35
505 1805 4.952071 TTGTTCCAATCAAATCAAGCCA 57.048 36.364 0.00 0.00 0.00 4.75
506 1806 4.255833 TGTTCCAATCAAATCAAGCCAC 57.744 40.909 0.00 0.00 0.00 5.01
507 1807 3.244976 GTTCCAATCAAATCAAGCCACG 58.755 45.455 0.00 0.00 0.00 4.94
508 1808 2.513753 TCCAATCAAATCAAGCCACGT 58.486 42.857 0.00 0.00 0.00 4.49
509 1809 3.680490 TCCAATCAAATCAAGCCACGTA 58.320 40.909 0.00 0.00 0.00 3.57
510 1810 3.438781 TCCAATCAAATCAAGCCACGTAC 59.561 43.478 0.00 0.00 0.00 3.67
511 1811 3.190327 CCAATCAAATCAAGCCACGTACA 59.810 43.478 0.00 0.00 0.00 2.90
512 1812 4.158384 CAATCAAATCAAGCCACGTACAC 58.842 43.478 0.00 0.00 0.00 2.90
513 1813 1.795872 TCAAATCAAGCCACGTACACG 59.204 47.619 0.00 0.00 46.33 4.49
514 1814 1.136085 CAAATCAAGCCACGTACACGG 60.136 52.381 6.72 0.00 44.95 4.94
515 1815 0.672401 AATCAAGCCACGTACACGGG 60.672 55.000 6.72 1.25 44.95 5.28
522 1822 4.315588 ACGTACACGGGAGGAGAG 57.684 61.111 6.72 0.00 44.95 3.20
523 1823 1.378250 ACGTACACGGGAGGAGAGG 60.378 63.158 6.72 0.00 44.95 3.69
524 1824 1.077930 CGTACACGGGAGGAGAGGA 60.078 63.158 0.00 0.00 35.37 3.71
525 1825 0.465824 CGTACACGGGAGGAGAGGAT 60.466 60.000 0.00 0.00 35.37 3.24
526 1826 1.033574 GTACACGGGAGGAGAGGATG 58.966 60.000 0.00 0.00 0.00 3.51
527 1827 0.755698 TACACGGGAGGAGAGGATGC 60.756 60.000 0.00 0.00 0.00 3.91
528 1828 2.060383 CACGGGAGGAGAGGATGCA 61.060 63.158 0.00 0.00 0.00 3.96
529 1829 1.306141 ACGGGAGGAGAGGATGCAA 60.306 57.895 0.00 0.00 0.00 4.08
530 1830 1.333636 ACGGGAGGAGAGGATGCAAG 61.334 60.000 0.00 0.00 0.00 4.01
531 1831 1.333636 CGGGAGGAGAGGATGCAAGT 61.334 60.000 0.00 0.00 0.00 3.16
532 1832 0.915364 GGGAGGAGAGGATGCAAGTT 59.085 55.000 0.00 0.00 0.00 2.66
533 1833 1.283321 GGGAGGAGAGGATGCAAGTTT 59.717 52.381 0.00 0.00 0.00 2.66
534 1834 2.637947 GGAGGAGAGGATGCAAGTTTC 58.362 52.381 0.00 0.00 0.00 2.78
535 1835 2.026822 GGAGGAGAGGATGCAAGTTTCA 60.027 50.000 0.00 0.00 0.00 2.69
536 1836 3.371380 GGAGGAGAGGATGCAAGTTTCAT 60.371 47.826 0.00 0.00 0.00 2.57
537 1837 3.876320 GAGGAGAGGATGCAAGTTTCATC 59.124 47.826 6.93 6.93 39.56 2.92
574 1874 7.458397 CCCTTAACCCACATTCTTGCTATATA 58.542 38.462 0.00 0.00 0.00 0.86
743 2043 0.939419 GCTTGCCAGCTTGTTTTTGG 59.061 50.000 1.78 0.00 43.51 3.28
744 2044 1.743431 GCTTGCCAGCTTGTTTTTGGT 60.743 47.619 1.78 0.00 43.51 3.67
745 2045 2.482839 GCTTGCCAGCTTGTTTTTGGTA 60.483 45.455 1.78 0.00 43.51 3.25
777 2078 3.696548 TCTGCATGTCTCCAGTAGTGTAG 59.303 47.826 0.00 0.00 0.00 2.74
812 2113 8.655935 ATTGTTGTTCCAGGAAAGATAGAATT 57.344 30.769 2.45 0.00 0.00 2.17
813 2114 9.753674 ATTGTTGTTCCAGGAAAGATAGAATTA 57.246 29.630 2.45 0.00 0.00 1.40
814 2115 9.753674 TTGTTGTTCCAGGAAAGATAGAATTAT 57.246 29.630 2.45 0.00 0.00 1.28
815 2116 9.177608 TGTTGTTCCAGGAAAGATAGAATTATG 57.822 33.333 2.45 0.00 0.00 1.90
818 2119 8.998814 TGTTCCAGGAAAGATAGAATTATGGTA 58.001 33.333 2.45 0.00 0.00 3.25
856 2157 6.049149 ACTTTATATCGTCACTGGAATGGTG 58.951 40.000 0.00 0.00 36.17 4.17
870 2171 0.036732 ATGGTGTCATCGCACAAGGT 59.963 50.000 0.00 0.00 40.89 3.50
959 2269 1.743772 GCACTGGCTGTACATACTGGG 60.744 57.143 0.00 0.00 36.96 4.45
981 2291 3.675225 GCGCACACATATATAGAGTGGTG 59.325 47.826 17.50 14.30 37.58 4.17
1057 2367 2.502080 CGCGAGTCCACGACAGTC 60.502 66.667 0.00 0.00 34.60 3.51
1088 2398 0.969149 ACTGGAGCACATCGTCTTCA 59.031 50.000 0.00 0.00 0.00 3.02
1089 2399 1.067283 ACTGGAGCACATCGTCTTCAG 60.067 52.381 0.00 0.00 40.83 3.02
1090 2400 0.390340 TGGAGCACATCGTCTTCAGC 60.390 55.000 0.00 0.00 0.00 4.26
1176 2489 2.887790 AGCTACGGTGATCTGCTGA 58.112 52.632 0.00 0.00 32.32 4.26
1178 2491 1.068281 AGCTACGGTGATCTGCTGATG 59.932 52.381 11.21 0.00 32.19 3.07
1179 2492 1.202463 GCTACGGTGATCTGCTGATGT 60.202 52.381 11.21 5.29 32.19 3.06
1181 2494 1.730501 ACGGTGATCTGCTGATGTTG 58.269 50.000 11.21 1.11 32.19 3.33
1247 2569 3.781770 GATGAGCGCCGGAGACCTG 62.782 68.421 10.31 0.00 0.00 4.00
1256 2578 1.447489 CGGAGACCTGCAAGCTCTG 60.447 63.158 9.22 7.16 0.00 3.35
1416 2753 0.656785 GTCGTCTGGTCGGTAGCTAG 59.343 60.000 0.00 0.00 0.00 3.42
1417 2754 0.251354 TCGTCTGGTCGGTAGCTAGT 59.749 55.000 0.00 0.00 0.00 2.57
1418 2755 1.482182 TCGTCTGGTCGGTAGCTAGTA 59.518 52.381 0.00 0.00 0.00 1.82
1419 2756 1.596727 CGTCTGGTCGGTAGCTAGTAC 59.403 57.143 0.00 0.00 0.00 2.73
1420 2757 2.741228 CGTCTGGTCGGTAGCTAGTACT 60.741 54.545 0.00 0.00 0.00 2.73
1421 2758 3.491619 CGTCTGGTCGGTAGCTAGTACTA 60.492 52.174 1.89 1.89 0.00 1.82
1422 2759 3.807071 GTCTGGTCGGTAGCTAGTACTAC 59.193 52.174 0.00 0.00 41.54 2.73
1423 2760 2.799412 CTGGTCGGTAGCTAGTACTACG 59.201 54.545 0.00 0.95 42.90 3.51
1438 2775 0.026674 CTACGATGCATGCCACGTTG 59.973 55.000 32.03 27.52 39.59 4.10
1641 2978 3.175240 CTCTGCTCAACGACGCCG 61.175 66.667 0.00 0.00 42.50 6.46
1768 3108 6.523840 TCAACCTCTACTAGTAGCTAGCTAC 58.476 44.000 37.13 37.13 46.70 3.58
1802 3142 4.513692 GCTCCTCGCATCGATCTATATAGT 59.486 45.833 9.58 0.00 38.92 2.12
1803 3143 5.697178 GCTCCTCGCATCGATCTATATAGTA 59.303 44.000 9.58 0.00 38.92 1.82
1807 3188 8.083462 TCCTCGCATCGATCTATATAGTACTAG 58.917 40.741 8.85 0.00 34.61 2.57
1844 3255 5.047847 CGTCTACCTTCTCTGTCAACAAAA 58.952 41.667 0.00 0.00 0.00 2.44
1845 3256 5.522460 CGTCTACCTTCTCTGTCAACAAAAA 59.478 40.000 0.00 0.00 0.00 1.94
1952 3387 1.078497 CACGAGTTAGGGGCATGCA 60.078 57.895 21.36 0.00 0.00 3.96
1958 3393 1.832998 AGTTAGGGGCATGCAAAATGG 59.167 47.619 21.36 0.00 0.00 3.16
1961 3396 1.746239 GGGGCATGCAAAATGGTGC 60.746 57.895 21.36 0.00 45.15 5.01
1989 3428 8.242729 TCAGTGTCACATAGAATATCTGTCAT 57.757 34.615 5.62 0.00 0.00 3.06
1990 3429 9.354673 TCAGTGTCACATAGAATATCTGTCATA 57.645 33.333 5.62 0.00 0.00 2.15
1991 3430 9.623350 CAGTGTCACATAGAATATCTGTCATAG 57.377 37.037 5.62 0.00 0.00 2.23
1992 3431 9.579932 AGTGTCACATAGAATATCTGTCATAGA 57.420 33.333 5.62 0.00 40.37 1.98
2021 3460 4.104738 TGTCAAGGTGGAGGAAAGAGAAAT 59.895 41.667 0.00 0.00 0.00 2.17
2032 3471 8.757877 TGGAGGAAAGAGAAATCAAAAGAAAAA 58.242 29.630 0.00 0.00 0.00 1.94
2053 3492 4.400036 AACTTATCTTTTGGCGAACGTC 57.600 40.909 0.00 0.00 0.00 4.34
2054 3493 2.410730 ACTTATCTTTTGGCGAACGTCG 59.589 45.455 0.00 0.00 43.89 5.12
2055 3494 1.352114 TATCTTTTGGCGAACGTCGG 58.648 50.000 8.96 0.00 40.84 4.79
2056 3495 0.601841 ATCTTTTGGCGAACGTCGGT 60.602 50.000 8.96 0.00 40.84 4.69
2057 3496 0.810823 TCTTTTGGCGAACGTCGGTT 60.811 50.000 8.96 0.00 40.84 4.44
2058 3497 0.656205 CTTTTGGCGAACGTCGGTTG 60.656 55.000 8.96 0.00 40.84 3.77
2059 3498 2.049475 TTTTGGCGAACGTCGGTTGG 62.049 55.000 0.00 0.00 40.84 3.77
2060 3499 4.973055 TGGCGAACGTCGGTTGGG 62.973 66.667 0.00 0.00 40.84 4.12
2061 3500 4.668118 GGCGAACGTCGGTTGGGA 62.668 66.667 0.00 0.00 40.84 4.37
2063 3502 2.664436 GCGAACGTCGGTTGGGAAG 61.664 63.158 0.00 0.00 40.84 3.46
2064 3503 2.025418 CGAACGTCGGTTGGGAAGG 61.025 63.158 0.00 0.00 36.24 3.46
2065 3504 1.670083 GAACGTCGGTTGGGAAGGG 60.670 63.158 0.00 0.00 36.24 3.95
2067 3506 3.315949 CGTCGGTTGGGAAGGGGA 61.316 66.667 0.00 0.00 0.00 4.81
2070 3509 2.275418 CGGTTGGGAAGGGGATGG 59.725 66.667 0.00 0.00 0.00 3.51
2071 3510 2.042944 GGTTGGGAAGGGGATGGC 60.043 66.667 0.00 0.00 0.00 4.40
2072 3511 2.770130 GTTGGGAAGGGGATGGCA 59.230 61.111 0.00 0.00 0.00 4.92
2073 3512 1.078347 GTTGGGAAGGGGATGGCAA 59.922 57.895 0.00 0.00 0.00 4.52
2074 3513 0.972471 GTTGGGAAGGGGATGGCAAG 60.972 60.000 0.00 0.00 0.00 4.01
2075 3514 1.442886 TTGGGAAGGGGATGGCAAGT 61.443 55.000 0.00 0.00 0.00 3.16
2077 3516 0.853530 GGGAAGGGGATGGCAAGTAT 59.146 55.000 0.00 0.00 0.00 2.12
2078 3517 2.062636 GGGAAGGGGATGGCAAGTATA 58.937 52.381 0.00 0.00 0.00 1.47
2079 3518 2.224793 GGGAAGGGGATGGCAAGTATAC 60.225 54.545 0.00 0.00 0.00 1.47
2080 3519 2.224793 GGAAGGGGATGGCAAGTATACC 60.225 54.545 0.00 0.00 0.00 2.73
2081 3520 2.514726 AGGGGATGGCAAGTATACCT 57.485 50.000 0.00 0.00 0.00 3.08
2082 3521 2.057922 AGGGGATGGCAAGTATACCTG 58.942 52.381 0.00 0.00 0.00 4.00
2084 3523 1.545651 GGGATGGCAAGTATACCTGGC 60.546 57.143 18.59 18.59 39.65 4.85
2090 3529 1.749063 GCAAGTATACCTGGCCAAACC 59.251 52.381 7.01 0.00 33.59 3.27
2091 3530 2.620627 GCAAGTATACCTGGCCAAACCT 60.621 50.000 7.01 0.00 40.22 3.50
2092 3531 3.279434 CAAGTATACCTGGCCAAACCTC 58.721 50.000 7.01 0.00 40.22 3.85
2093 3532 1.485066 AGTATACCTGGCCAAACCTCG 59.515 52.381 7.01 0.00 40.22 4.63
2095 3534 1.921869 ATACCTGGCCAAACCTCGGG 61.922 60.000 7.01 4.92 40.22 5.14
2118 3557 4.554036 CCTAGCCAAGCCCGAGCC 62.554 72.222 0.00 0.00 41.25 4.70
2119 3558 3.785859 CTAGCCAAGCCCGAGCCA 61.786 66.667 0.00 0.00 41.25 4.75
2120 3559 3.326578 TAGCCAAGCCCGAGCCAA 61.327 61.111 0.00 0.00 41.25 4.52
2121 3560 2.819984 CTAGCCAAGCCCGAGCCAAA 62.820 60.000 0.00 0.00 41.25 3.28
2122 3561 2.419011 TAGCCAAGCCCGAGCCAAAA 62.419 55.000 0.00 0.00 41.25 2.44
2123 3562 2.866726 GCCAAGCCCGAGCCAAAAA 61.867 57.895 0.00 0.00 41.25 1.94
2166 3605 3.217231 CGGTCATCGGGCCTAGTT 58.783 61.111 0.84 0.00 34.75 2.24
2168 3607 0.107848 CGGTCATCGGGCCTAGTTTT 60.108 55.000 0.84 0.00 34.75 2.43
2170 3609 1.743394 GGTCATCGGGCCTAGTTTTTG 59.257 52.381 0.84 0.00 0.00 2.44
2171 3610 1.743394 GTCATCGGGCCTAGTTTTTGG 59.257 52.381 0.84 0.00 0.00 3.28
2172 3611 1.102978 CATCGGGCCTAGTTTTTGGG 58.897 55.000 0.84 0.00 0.00 4.12
2176 3615 4.531351 GCCTAGTTTTTGGGCCCA 57.469 55.556 24.45 24.45 39.96 5.36
2177 3616 2.753319 GCCTAGTTTTTGGGCCCAA 58.247 52.632 34.07 34.07 39.96 4.12
2178 3617 0.608130 GCCTAGTTTTTGGGCCCAAG 59.392 55.000 35.02 23.09 39.96 3.61
2191 3630 4.659172 CCAAGCCCGGCCTGAACA 62.659 66.667 9.78 0.00 0.00 3.18
2192 3631 2.361610 CAAGCCCGGCCTGAACAT 60.362 61.111 5.55 0.00 0.00 2.71
2193 3632 2.361610 AAGCCCGGCCTGAACATG 60.362 61.111 5.55 0.00 0.00 3.21
2196 3635 2.676121 CCCGGCCTGAACATGCAA 60.676 61.111 0.00 0.00 0.00 4.08
2197 3636 2.274645 CCCGGCCTGAACATGCAAA 61.275 57.895 0.00 0.00 0.00 3.68
2198 3637 1.664873 CCGGCCTGAACATGCAAAA 59.335 52.632 0.00 0.00 0.00 2.44
2199 3638 0.388907 CCGGCCTGAACATGCAAAAG 60.389 55.000 0.00 0.00 0.00 2.27
2200 3639 1.010419 CGGCCTGAACATGCAAAAGC 61.010 55.000 0.00 0.00 0.00 3.51
2201 3640 0.671472 GGCCTGAACATGCAAAAGCC 60.671 55.000 0.00 0.00 0.00 4.35
2202 3641 0.671472 GCCTGAACATGCAAAAGCCC 60.671 55.000 0.00 0.00 0.00 5.19
2203 3642 0.388907 CCTGAACATGCAAAAGCCCG 60.389 55.000 0.00 0.00 0.00 6.13
2204 3643 1.006337 TGAACATGCAAAAGCCCGC 60.006 52.632 0.00 0.00 0.00 6.13
2205 3644 1.737735 GAACATGCAAAAGCCCGCC 60.738 57.895 0.00 0.00 0.00 6.13
2206 3645 2.433231 GAACATGCAAAAGCCCGCCA 62.433 55.000 0.00 0.00 0.00 5.69
2207 3646 2.125832 CATGCAAAAGCCCGCCAG 60.126 61.111 0.00 0.00 0.00 4.85
2208 3647 3.384532 ATGCAAAAGCCCGCCAGG 61.385 61.111 0.00 0.00 39.47 4.45
2219 3658 4.033776 CGCCAGGCCCCTTCAGAA 62.034 66.667 5.63 0.00 0.00 3.02
2220 3659 2.440599 GCCAGGCCCCTTCAGAAA 59.559 61.111 0.00 0.00 0.00 2.52
2221 3660 1.228862 GCCAGGCCCCTTCAGAAAA 60.229 57.895 0.00 0.00 0.00 2.29
2222 3661 1.536073 GCCAGGCCCCTTCAGAAAAC 61.536 60.000 0.00 0.00 0.00 2.43
2223 3662 0.113190 CCAGGCCCCTTCAGAAAACT 59.887 55.000 0.00 0.00 0.00 2.66
2224 3663 1.251251 CAGGCCCCTTCAGAAAACTG 58.749 55.000 0.00 0.00 0.00 3.16
2225 3664 0.540597 AGGCCCCTTCAGAAAACTGC 60.541 55.000 0.00 0.00 0.00 4.40
2226 3665 0.827507 GGCCCCTTCAGAAAACTGCA 60.828 55.000 0.00 0.00 0.00 4.41
2227 3666 1.039856 GCCCCTTCAGAAAACTGCAA 58.960 50.000 0.00 0.00 0.00 4.08
2228 3667 1.412343 GCCCCTTCAGAAAACTGCAAA 59.588 47.619 0.00 0.00 0.00 3.68
2229 3668 2.158971 GCCCCTTCAGAAAACTGCAAAA 60.159 45.455 0.00 0.00 0.00 2.44
2230 3669 3.681313 GCCCCTTCAGAAAACTGCAAAAA 60.681 43.478 0.00 0.00 0.00 1.94
2231 3670 4.707105 CCCCTTCAGAAAACTGCAAAAAT 58.293 39.130 0.00 0.00 0.00 1.82
2232 3671 4.512571 CCCCTTCAGAAAACTGCAAAAATG 59.487 41.667 0.00 0.00 0.00 2.32
2233 3672 5.358922 CCCTTCAGAAAACTGCAAAAATGA 58.641 37.500 0.00 0.00 0.00 2.57
2234 3673 5.234972 CCCTTCAGAAAACTGCAAAAATGAC 59.765 40.000 0.00 0.00 0.00 3.06
2235 3674 5.051508 CCTTCAGAAAACTGCAAAAATGACG 60.052 40.000 0.00 0.00 0.00 4.35
2236 3675 4.358851 TCAGAAAACTGCAAAAATGACGG 58.641 39.130 0.00 0.00 0.00 4.79
2237 3676 3.490526 CAGAAAACTGCAAAAATGACGGG 59.509 43.478 0.00 0.00 0.00 5.28
2238 3677 1.864565 AAACTGCAAAAATGACGGGC 58.135 45.000 0.00 0.00 0.00 6.13
2239 3678 0.033366 AACTGCAAAAATGACGGGCC 59.967 50.000 0.00 0.00 0.00 5.80
2240 3679 1.079888 CTGCAAAAATGACGGGCCC 60.080 57.895 13.57 13.57 0.00 5.80
2241 3680 2.126110 GCAAAAATGACGGGCCCG 60.126 61.111 42.17 42.17 46.03 6.13
2242 3681 2.571231 CAAAAATGACGGGCCCGG 59.429 61.111 44.99 28.13 44.69 5.73
2243 3682 2.678580 AAAAATGACGGGCCCGGG 60.679 61.111 44.99 22.37 44.69 5.73
2289 3728 3.428282 CCGGGTCGGGCTTTTTCG 61.428 66.667 0.00 0.00 44.15 3.46
2290 3729 3.428282 CGGGTCGGGCTTTTTCGG 61.428 66.667 0.00 0.00 0.00 4.30
2291 3730 3.060000 GGGTCGGGCTTTTTCGGG 61.060 66.667 0.00 0.00 0.00 5.14
2292 3731 3.744719 GGTCGGGCTTTTTCGGGC 61.745 66.667 0.00 0.00 0.00 6.13
2293 3732 3.744719 GTCGGGCTTTTTCGGGCC 61.745 66.667 0.00 0.00 46.89 5.80
2315 3754 4.864334 GGGCCGAGCTGTCCATGG 62.864 72.222 4.97 4.97 0.00 3.66
2318 3757 4.100084 CCGAGCTGTCCATGGCCA 62.100 66.667 8.56 8.56 0.00 5.36
2319 3758 2.513204 CGAGCTGTCCATGGCCAG 60.513 66.667 18.61 18.61 0.00 4.85
2320 3759 2.124403 GAGCTGTCCATGGCCAGG 60.124 66.667 23.57 12.17 0.00 4.45
2321 3760 2.937689 AGCTGTCCATGGCCAGGT 60.938 61.111 21.26 21.26 34.75 4.00
2322 3761 2.439156 GCTGTCCATGGCCAGGTC 60.439 66.667 23.57 13.10 0.00 3.85
2323 3762 2.976490 GCTGTCCATGGCCAGGTCT 61.976 63.158 23.57 0.00 0.00 3.85
2324 3763 1.626356 GCTGTCCATGGCCAGGTCTA 61.626 60.000 23.57 0.00 0.00 2.59
2334 3773 2.397751 CCAGGTCTAATGGCAAGCG 58.602 57.895 0.00 0.00 0.00 4.68
2337 3776 1.398390 CAGGTCTAATGGCAAGCGAAC 59.602 52.381 0.00 0.00 0.00 3.95
2391 3830 2.364448 AGGGGACTCTCCGGCTTC 60.364 66.667 0.00 0.00 37.43 3.86
2392 3831 2.364448 GGGGACTCTCCGGCTTCT 60.364 66.667 0.00 0.00 37.43 2.85
2393 3832 2.726351 GGGGACTCTCCGGCTTCTG 61.726 68.421 0.00 0.00 37.43 3.02
2394 3833 2.185608 GGACTCTCCGGCTTCTGC 59.814 66.667 0.00 0.00 38.76 4.26
2395 3834 2.650116 GGACTCTCCGGCTTCTGCA 61.650 63.158 0.00 0.00 41.91 4.41
2396 3835 1.519719 GACTCTCCGGCTTCTGCAT 59.480 57.895 0.00 0.00 41.91 3.96
2397 3836 0.529555 GACTCTCCGGCTTCTGCATC 60.530 60.000 0.00 0.00 41.91 3.91
2398 3837 1.260538 ACTCTCCGGCTTCTGCATCA 61.261 55.000 0.00 0.00 41.91 3.07
2399 3838 0.530211 CTCTCCGGCTTCTGCATCAG 60.530 60.000 0.00 0.00 41.91 2.90
2400 3839 0.972471 TCTCCGGCTTCTGCATCAGA 60.972 55.000 0.00 0.00 41.91 3.27
2401 3840 0.107993 CTCCGGCTTCTGCATCAGAA 60.108 55.000 0.00 8.72 46.50 3.02
2402 3841 0.391661 TCCGGCTTCTGCATCAGAAC 60.392 55.000 0.00 3.73 44.27 3.01
2403 3842 1.699656 CCGGCTTCTGCATCAGAACG 61.700 60.000 5.25 8.39 44.27 3.95
2404 3843 0.737367 CGGCTTCTGCATCAGAACGA 60.737 55.000 11.63 0.00 44.27 3.85
2405 3844 1.661341 GGCTTCTGCATCAGAACGAT 58.339 50.000 5.25 0.00 44.27 3.73
2414 3853 1.193203 CATCAGAACGATGCATACGGC 59.807 52.381 18.34 11.86 44.95 5.68
2415 3854 0.529773 TCAGAACGATGCATACGGCC 60.530 55.000 18.34 0.00 43.89 6.13
2416 3855 0.809636 CAGAACGATGCATACGGCCA 60.810 55.000 18.34 0.00 43.89 5.36
2417 3856 0.810031 AGAACGATGCATACGGCCAC 60.810 55.000 18.34 9.37 43.89 5.01
2418 3857 1.078778 AACGATGCATACGGCCACA 60.079 52.632 18.34 0.00 43.89 4.17
2419 3858 0.463654 AACGATGCATACGGCCACAT 60.464 50.000 18.34 0.00 43.89 3.21
2420 3859 0.391228 ACGATGCATACGGCCACATA 59.609 50.000 18.34 0.00 43.89 2.29
2421 3860 1.202592 ACGATGCATACGGCCACATAA 60.203 47.619 18.34 0.00 43.89 1.90
2422 3861 1.870402 CGATGCATACGGCCACATAAA 59.130 47.619 2.24 0.00 43.89 1.40
2423 3862 2.483877 CGATGCATACGGCCACATAAAT 59.516 45.455 2.24 0.00 43.89 1.40
2424 3863 3.682377 CGATGCATACGGCCACATAAATA 59.318 43.478 2.24 0.00 43.89 1.40
2425 3864 4.153296 CGATGCATACGGCCACATAAATAA 59.847 41.667 2.24 0.00 43.89 1.40
2426 3865 5.334491 CGATGCATACGGCCACATAAATAAA 60.334 40.000 2.24 0.00 43.89 1.40
2427 3866 6.588719 ATGCATACGGCCACATAAATAAAT 57.411 33.333 2.24 0.00 43.89 1.40
2428 3867 7.413548 CGATGCATACGGCCACATAAATAAATA 60.414 37.037 2.24 0.00 43.89 1.40
2429 3868 7.511959 TGCATACGGCCACATAAATAAATAA 57.488 32.000 2.24 0.00 43.89 1.40
2430 3869 7.941919 TGCATACGGCCACATAAATAAATAAA 58.058 30.769 2.24 0.00 43.89 1.40
2431 3870 8.414003 TGCATACGGCCACATAAATAAATAAAA 58.586 29.630 2.24 0.00 43.89 1.52
2432 3871 9.418045 GCATACGGCCACATAAATAAATAAAAT 57.582 29.630 2.24 0.00 36.11 1.82
2436 3875 9.138596 ACGGCCACATAAATAAATAAAATAGGT 57.861 29.630 2.24 0.00 0.00 3.08
2437 3876 9.974980 CGGCCACATAAATAAATAAAATAGGTT 57.025 29.630 2.24 0.00 0.00 3.50
2471 3910 9.997482 GATAAATCTTGCCTTTTTGTCGTATTA 57.003 29.630 0.00 0.00 0.00 0.98
2484 3924 9.601971 TTTTTGTCGTATTATTTTCTTCTTCCG 57.398 29.630 0.00 0.00 0.00 4.30
2486 3926 7.751047 TGTCGTATTATTTTCTTCTTCCGAG 57.249 36.000 0.00 0.00 0.00 4.63
2534 3974 1.211567 CCACCCACCCTCCCACAATA 61.212 60.000 0.00 0.00 0.00 1.90
2584 4044 4.907034 CATCGACCGAGCCCGACG 62.907 72.222 0.00 0.00 37.64 5.12
2596 4079 3.131396 GAGCCCGACGATGAATTAACAT 58.869 45.455 0.00 0.00 0.00 2.71
2598 4081 4.699637 AGCCCGACGATGAATTAACATAA 58.300 39.130 0.00 0.00 0.00 1.90
2599 4082 4.750098 AGCCCGACGATGAATTAACATAAG 59.250 41.667 0.00 0.00 0.00 1.73
2608 4091 7.066887 ACGATGAATTAACATAAGCATCAACCA 59.933 33.333 0.00 0.00 33.57 3.67
2613 4096 2.806434 ACATAAGCATCAACCAGCCAA 58.194 42.857 0.00 0.00 0.00 4.52
2614 4097 3.164268 ACATAAGCATCAACCAGCCAAA 58.836 40.909 0.00 0.00 0.00 3.28
2742 4233 1.525535 GCATGGAGCCGAAGATGCT 60.526 57.895 0.00 0.00 43.03 3.79
2765 4256 1.550976 GGTCCTCCTCTGTGAACGAAT 59.449 52.381 0.00 0.00 0.00 3.34
2789 4280 1.303317 GGGACAAGAACATGCCGGT 60.303 57.895 1.90 0.00 0.00 5.28
2816 4307 2.491693 GGAGAGAGGAAGACTGACACTG 59.508 54.545 0.00 0.00 0.00 3.66
2817 4308 3.153919 GAGAGAGGAAGACTGACACTGT 58.846 50.000 0.00 0.00 0.00 3.55
2819 4310 3.320541 AGAGAGGAAGACTGACACTGTTG 59.679 47.826 0.00 0.00 0.00 3.33
2820 4311 3.300388 AGAGGAAGACTGACACTGTTGA 58.700 45.455 0.00 0.00 0.00 3.18
2821 4312 3.068873 AGAGGAAGACTGACACTGTTGAC 59.931 47.826 0.00 0.00 0.00 3.18
2822 4313 2.128035 GGAAGACTGACACTGTTGACG 58.872 52.381 0.00 0.00 0.00 4.35
2823 4314 2.481449 GGAAGACTGACACTGTTGACGT 60.481 50.000 0.00 0.00 0.00 4.34
2824 4315 3.243301 GGAAGACTGACACTGTTGACGTA 60.243 47.826 0.00 0.00 0.00 3.57
2825 4316 4.357142 GAAGACTGACACTGTTGACGTAA 58.643 43.478 0.00 0.00 0.00 3.18
2827 4318 3.630769 AGACTGACACTGTTGACGTAAGA 59.369 43.478 0.00 0.00 43.62 2.10
2828 4319 3.966154 ACTGACACTGTTGACGTAAGAG 58.034 45.455 0.00 0.00 43.62 2.85
2829 4320 3.243434 ACTGACACTGTTGACGTAAGAGG 60.243 47.826 0.00 0.00 43.62 3.69
2830 4321 2.691526 TGACACTGTTGACGTAAGAGGT 59.308 45.455 0.00 0.00 43.62 3.85
2831 4322 3.243301 TGACACTGTTGACGTAAGAGGTC 60.243 47.826 0.00 3.15 43.62 3.85
2832 4323 2.957006 ACACTGTTGACGTAAGAGGTCT 59.043 45.455 0.00 0.00 43.62 3.85
2833 4324 3.383825 ACACTGTTGACGTAAGAGGTCTT 59.616 43.478 0.00 0.00 43.62 3.01
2834 4325 3.736252 CACTGTTGACGTAAGAGGTCTTG 59.264 47.826 2.32 0.00 43.62 3.02
2835 4326 3.635373 ACTGTTGACGTAAGAGGTCTTGA 59.365 43.478 2.32 0.00 43.62 3.02
2836 4327 4.230657 CTGTTGACGTAAGAGGTCTTGAG 58.769 47.826 2.32 0.00 43.62 3.02
2837 4328 3.635373 TGTTGACGTAAGAGGTCTTGAGT 59.365 43.478 2.32 2.57 43.62 3.41
2838 4329 4.098960 TGTTGACGTAAGAGGTCTTGAGTT 59.901 41.667 2.32 0.00 43.62 3.01
2839 4330 4.500603 TGACGTAAGAGGTCTTGAGTTC 57.499 45.455 2.32 0.00 43.62 3.01
2840 4331 3.887110 TGACGTAAGAGGTCTTGAGTTCA 59.113 43.478 2.32 0.00 43.62 3.18
2841 4332 4.340097 TGACGTAAGAGGTCTTGAGTTCAA 59.660 41.667 2.32 0.00 43.62 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.706339 AGATGCACATGAACCTCTCC 57.294 50.000 0.00 0.00 0.00 3.71
107 1407 7.106890 TCCTAATCATGTGTTAATCGGAACAA 58.893 34.615 0.00 0.00 40.88 2.83
110 1410 7.773224 ACATTCCTAATCATGTGTTAATCGGAA 59.227 33.333 11.42 11.42 32.19 4.30
113 1413 7.857389 CCAACATTCCTAATCATGTGTTAATCG 59.143 37.037 0.00 0.00 33.76 3.34
122 1422 6.780457 AACTTCCCAACATTCCTAATCATG 57.220 37.500 0.00 0.00 0.00 3.07
198 1498 0.884704 TCTGCCACTTTGCTCCGTTC 60.885 55.000 0.00 0.00 0.00 3.95
200 1500 1.302033 CTCTGCCACTTTGCTCCGT 60.302 57.895 0.00 0.00 0.00 4.69
201 1501 2.684843 GCTCTGCCACTTTGCTCCG 61.685 63.158 0.00 0.00 0.00 4.63
217 1517 1.949525 CTACACAGCAACAAACAGGCT 59.050 47.619 0.00 0.00 38.70 4.58
270 1570 2.884639 GCCTTTCTTTTCAGCACCTACA 59.115 45.455 0.00 0.00 0.00 2.74
271 1571 2.884639 TGCCTTTCTTTTCAGCACCTAC 59.115 45.455 0.00 0.00 0.00 3.18
272 1572 3.222173 TGCCTTTCTTTTCAGCACCTA 57.778 42.857 0.00 0.00 0.00 3.08
273 1573 2.071778 TGCCTTTCTTTTCAGCACCT 57.928 45.000 0.00 0.00 0.00 4.00
274 1574 4.427312 CATATGCCTTTCTTTTCAGCACC 58.573 43.478 0.00 0.00 36.06 5.01
355 1655 3.512516 GCAAGCCGGATCCAGCAC 61.513 66.667 21.95 7.26 0.00 4.40
356 1656 4.802051 GGCAAGCCGGATCCAGCA 62.802 66.667 21.95 0.00 0.00 4.41
357 1657 4.496336 AGGCAAGCCGGATCCAGC 62.496 66.667 12.36 12.36 41.95 4.85
358 1658 2.515523 CAGGCAAGCCGGATCCAG 60.516 66.667 13.41 0.36 41.95 3.86
359 1659 4.802051 GCAGGCAAGCCGGATCCA 62.802 66.667 15.46 0.00 41.95 3.41
360 1660 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
361 1661 2.899339 GAGCAGGCAAGCCGGATC 60.899 66.667 15.46 14.32 39.23 3.36
362 1662 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
364 1664 4.729918 AAGGAGCAGGCAAGCCGG 62.730 66.667 6.88 6.88 41.95 6.13
365 1665 2.674380 AAAGGAGCAGGCAAGCCG 60.674 61.111 5.28 2.12 41.95 5.52
366 1666 2.346541 GGAAAGGAGCAGGCAAGCC 61.347 63.158 2.02 2.02 34.23 4.35
367 1667 2.346541 GGGAAAGGAGCAGGCAAGC 61.347 63.158 0.00 0.00 0.00 4.01
368 1668 2.042831 CGGGAAAGGAGCAGGCAAG 61.043 63.158 0.00 0.00 0.00 4.01
369 1669 2.034066 CGGGAAAGGAGCAGGCAA 59.966 61.111 0.00 0.00 0.00 4.52
370 1670 3.249189 ACGGGAAAGGAGCAGGCA 61.249 61.111 0.00 0.00 0.00 4.75
371 1671 2.747855 CACGGGAAAGGAGCAGGC 60.748 66.667 0.00 0.00 0.00 4.85
372 1672 2.747855 GCACGGGAAAGGAGCAGG 60.748 66.667 0.00 0.00 0.00 4.85
373 1673 1.743252 GAGCACGGGAAAGGAGCAG 60.743 63.158 0.00 0.00 0.00 4.24
374 1674 2.347490 GAGCACGGGAAAGGAGCA 59.653 61.111 0.00 0.00 0.00 4.26
375 1675 2.436824 GGAGCACGGGAAAGGAGC 60.437 66.667 0.00 0.00 0.00 4.70
376 1676 2.269241 GGGAGCACGGGAAAGGAG 59.731 66.667 0.00 0.00 0.00 3.69
377 1677 2.528127 TGGGAGCACGGGAAAGGA 60.528 61.111 0.00 0.00 0.00 3.36
378 1678 2.359975 GTGGGAGCACGGGAAAGG 60.360 66.667 0.00 0.00 0.00 3.11
379 1679 2.359975 GGTGGGAGCACGGGAAAG 60.360 66.667 0.00 0.00 0.00 2.62
380 1680 2.852075 AGGTGGGAGCACGGGAAA 60.852 61.111 0.00 0.00 0.00 3.13
381 1681 3.319198 GAGGTGGGAGCACGGGAA 61.319 66.667 0.00 0.00 0.00 3.97
382 1682 3.924013 ATGAGGTGGGAGCACGGGA 62.924 63.158 0.00 0.00 0.00 5.14
383 1683 3.391665 GATGAGGTGGGAGCACGGG 62.392 68.421 0.00 0.00 0.00 5.28
384 1684 2.187946 GATGAGGTGGGAGCACGG 59.812 66.667 0.00 0.00 0.00 4.94
385 1685 2.202797 CGATGAGGTGGGAGCACG 60.203 66.667 0.00 0.00 0.00 5.34
386 1686 0.741221 GTTCGATGAGGTGGGAGCAC 60.741 60.000 0.00 0.00 0.00 4.40
387 1687 1.596934 GTTCGATGAGGTGGGAGCA 59.403 57.895 0.00 0.00 0.00 4.26
388 1688 1.519455 CGTTCGATGAGGTGGGAGC 60.519 63.158 0.00 0.00 0.00 4.70
389 1689 1.141881 CCGTTCGATGAGGTGGGAG 59.858 63.158 0.00 0.00 0.00 4.30
390 1690 3.014085 GCCGTTCGATGAGGTGGGA 62.014 63.158 0.00 0.00 0.00 4.37
391 1691 2.511600 GCCGTTCGATGAGGTGGG 60.512 66.667 0.00 0.00 0.00 4.61
392 1692 1.811266 CAGCCGTTCGATGAGGTGG 60.811 63.158 0.00 0.00 0.00 4.61
393 1693 0.670546 AACAGCCGTTCGATGAGGTG 60.671 55.000 6.71 6.71 0.00 4.00
394 1694 0.034896 AAACAGCCGTTCGATGAGGT 59.965 50.000 0.00 0.00 32.91 3.85
395 1695 1.156736 AAAACAGCCGTTCGATGAGG 58.843 50.000 0.00 0.00 32.91 3.86
396 1696 2.969443 AAAAACAGCCGTTCGATGAG 57.031 45.000 0.00 0.00 32.91 2.90
425 1725 9.807921 GGGGGAGATGATTATATTAACAAGAAA 57.192 33.333 0.00 0.00 0.00 2.52
451 1751 2.466846 CCCCACCCCTTTAAAATCAGG 58.533 52.381 0.00 0.00 0.00 3.86
452 1752 1.831106 GCCCCACCCCTTTAAAATCAG 59.169 52.381 0.00 0.00 0.00 2.90
453 1753 1.553651 GGCCCCACCCCTTTAAAATCA 60.554 52.381 0.00 0.00 0.00 2.57
454 1754 1.200519 GGCCCCACCCCTTTAAAATC 58.799 55.000 0.00 0.00 0.00 2.17
455 1755 0.616395 CGGCCCCACCCCTTTAAAAT 60.616 55.000 0.00 0.00 33.26 1.82
456 1756 1.228925 CGGCCCCACCCCTTTAAAA 60.229 57.895 0.00 0.00 33.26 1.52
457 1757 2.441505 CGGCCCCACCCCTTTAAA 59.558 61.111 0.00 0.00 33.26 1.52
458 1758 3.663806 CCGGCCCCACCCCTTTAA 61.664 66.667 0.00 0.00 33.26 1.52
465 1765 2.219449 AAATAAGACCCGGCCCCACC 62.219 60.000 0.00 0.00 0.00 4.61
466 1766 0.323999 AAAATAAGACCCGGCCCCAC 60.324 55.000 0.00 0.00 0.00 4.61
467 1767 0.323908 CAAAATAAGACCCGGCCCCA 60.324 55.000 0.00 0.00 0.00 4.96
468 1768 0.323999 ACAAAATAAGACCCGGCCCC 60.324 55.000 0.00 0.00 0.00 5.80
469 1769 1.475280 GAACAAAATAAGACCCGGCCC 59.525 52.381 0.00 0.00 0.00 5.80
470 1770 1.475280 GGAACAAAATAAGACCCGGCC 59.525 52.381 0.00 0.00 0.00 6.13
471 1771 2.164338 TGGAACAAAATAAGACCCGGC 58.836 47.619 0.00 0.00 31.92 6.13
485 1785 3.305267 CGTGGCTTGATTTGATTGGAACA 60.305 43.478 0.00 0.00 0.00 3.18
486 1786 3.244976 CGTGGCTTGATTTGATTGGAAC 58.755 45.455 0.00 0.00 0.00 3.62
487 1787 2.890311 ACGTGGCTTGATTTGATTGGAA 59.110 40.909 0.00 0.00 0.00 3.53
488 1788 2.513753 ACGTGGCTTGATTTGATTGGA 58.486 42.857 0.00 0.00 0.00 3.53
489 1789 3.190327 TGTACGTGGCTTGATTTGATTGG 59.810 43.478 0.00 0.00 0.00 3.16
490 1790 4.158384 GTGTACGTGGCTTGATTTGATTG 58.842 43.478 0.00 0.00 0.00 2.67
491 1791 3.120338 CGTGTACGTGGCTTGATTTGATT 60.120 43.478 0.00 0.00 34.11 2.57
492 1792 2.415168 CGTGTACGTGGCTTGATTTGAT 59.585 45.455 0.00 0.00 34.11 2.57
493 1793 1.795872 CGTGTACGTGGCTTGATTTGA 59.204 47.619 0.00 0.00 34.11 2.69
494 1794 1.136085 CCGTGTACGTGGCTTGATTTG 60.136 52.381 0.00 0.00 37.74 2.32
495 1795 1.153353 CCGTGTACGTGGCTTGATTT 58.847 50.000 0.00 0.00 37.74 2.17
496 1796 0.672401 CCCGTGTACGTGGCTTGATT 60.672 55.000 0.00 0.00 37.74 2.57
497 1797 1.079405 CCCGTGTACGTGGCTTGAT 60.079 57.895 0.00 0.00 37.74 2.57
498 1798 2.149803 CTCCCGTGTACGTGGCTTGA 62.150 60.000 0.00 0.00 37.74 3.02
499 1799 1.736645 CTCCCGTGTACGTGGCTTG 60.737 63.158 0.00 0.00 37.74 4.01
500 1800 2.654877 CTCCCGTGTACGTGGCTT 59.345 61.111 0.00 0.00 37.74 4.35
501 1801 3.379445 CCTCCCGTGTACGTGGCT 61.379 66.667 0.00 0.00 37.74 4.75
502 1802 3.352338 CTCCTCCCGTGTACGTGGC 62.352 68.421 0.00 0.00 37.74 5.01
503 1803 1.654954 CTCTCCTCCCGTGTACGTGG 61.655 65.000 0.00 4.86 37.74 4.94
504 1804 1.654954 CCTCTCCTCCCGTGTACGTG 61.655 65.000 0.00 0.00 37.74 4.49
505 1805 1.378250 CCTCTCCTCCCGTGTACGT 60.378 63.158 3.57 0.00 37.74 3.57
506 1806 0.465824 ATCCTCTCCTCCCGTGTACG 60.466 60.000 0.00 0.00 39.44 3.67
507 1807 1.033574 CATCCTCTCCTCCCGTGTAC 58.966 60.000 0.00 0.00 0.00 2.90
508 1808 0.755698 GCATCCTCTCCTCCCGTGTA 60.756 60.000 0.00 0.00 0.00 2.90
509 1809 2.060980 GCATCCTCTCCTCCCGTGT 61.061 63.158 0.00 0.00 0.00 4.49
510 1810 1.617018 TTGCATCCTCTCCTCCCGTG 61.617 60.000 0.00 0.00 0.00 4.94
511 1811 1.306141 TTGCATCCTCTCCTCCCGT 60.306 57.895 0.00 0.00 0.00 5.28
512 1812 1.333636 ACTTGCATCCTCTCCTCCCG 61.334 60.000 0.00 0.00 0.00 5.14
513 1813 0.915364 AACTTGCATCCTCTCCTCCC 59.085 55.000 0.00 0.00 0.00 4.30
514 1814 2.026822 TGAAACTTGCATCCTCTCCTCC 60.027 50.000 0.00 0.00 0.00 4.30
515 1815 3.340814 TGAAACTTGCATCCTCTCCTC 57.659 47.619 0.00 0.00 0.00 3.71
516 1816 3.883669 GATGAAACTTGCATCCTCTCCT 58.116 45.455 0.00 0.00 36.91 3.69
523 1823 3.128242 CACTGGAGGATGAAACTTGCATC 59.872 47.826 1.33 1.33 41.03 3.91
524 1824 3.087031 CACTGGAGGATGAAACTTGCAT 58.913 45.455 0.00 0.00 0.00 3.96
525 1825 2.507484 CACTGGAGGATGAAACTTGCA 58.493 47.619 0.00 0.00 0.00 4.08
526 1826 1.200948 GCACTGGAGGATGAAACTTGC 59.799 52.381 0.00 0.00 0.00 4.01
527 1827 2.486982 CAGCACTGGAGGATGAAACTTG 59.513 50.000 0.00 0.00 0.00 3.16
528 1828 2.787994 CAGCACTGGAGGATGAAACTT 58.212 47.619 0.00 0.00 0.00 2.66
529 1829 1.612726 GCAGCACTGGAGGATGAAACT 60.613 52.381 0.00 0.00 0.00 2.66
530 1830 0.807496 GCAGCACTGGAGGATGAAAC 59.193 55.000 0.00 0.00 0.00 2.78
531 1831 0.322816 GGCAGCACTGGAGGATGAAA 60.323 55.000 0.00 0.00 0.00 2.69
532 1832 1.300963 GGCAGCACTGGAGGATGAA 59.699 57.895 0.00 0.00 0.00 2.57
533 1833 2.673200 GGGCAGCACTGGAGGATGA 61.673 63.158 0.00 0.00 0.00 2.92
534 1834 2.124403 GGGCAGCACTGGAGGATG 60.124 66.667 0.00 0.00 0.00 3.51
535 1835 0.621571 TAAGGGCAGCACTGGAGGAT 60.622 55.000 0.00 0.00 0.00 3.24
536 1836 0.840288 TTAAGGGCAGCACTGGAGGA 60.840 55.000 0.00 0.00 0.00 3.71
537 1837 0.678048 GTTAAGGGCAGCACTGGAGG 60.678 60.000 0.00 0.00 0.00 4.30
538 1838 0.678048 GGTTAAGGGCAGCACTGGAG 60.678 60.000 0.00 0.00 0.00 3.86
539 1839 1.378762 GGTTAAGGGCAGCACTGGA 59.621 57.895 0.00 0.00 0.00 3.86
540 1840 1.678970 GGGTTAAGGGCAGCACTGG 60.679 63.158 0.00 0.00 0.00 4.00
541 1841 1.074775 TGGGTTAAGGGCAGCACTG 59.925 57.895 0.00 0.00 0.00 3.66
542 1842 1.074951 GTGGGTTAAGGGCAGCACT 59.925 57.895 0.00 0.00 0.00 4.40
574 1874 1.467678 AAGCTGGCAGTCACGACTCT 61.468 55.000 17.16 0.00 40.20 3.24
741 2041 5.305386 AGACATGCAGATACAAGCTATACCA 59.695 40.000 0.00 0.00 0.00 3.25
743 2043 5.866633 GGAGACATGCAGATACAAGCTATAC 59.133 44.000 0.00 0.00 0.00 1.47
744 2044 5.539955 TGGAGACATGCAGATACAAGCTATA 59.460 40.000 0.00 0.00 33.40 1.31
745 2045 4.346127 TGGAGACATGCAGATACAAGCTAT 59.654 41.667 0.00 0.00 33.40 2.97
777 2078 3.401182 TGGAACAACAATACGTGGGTAC 58.599 45.455 0.00 0.00 31.92 3.34
856 2157 3.505464 ACTACTACCTTGTGCGATGAC 57.495 47.619 0.00 0.00 0.00 3.06
870 2171 8.565896 TGATTTGAAACGACCTACTACTACTA 57.434 34.615 0.00 0.00 0.00 1.82
944 2245 1.887707 GCGCCCAGTATGTACAGCC 60.888 63.158 0.33 0.00 0.00 4.85
959 2269 3.675225 CACCACTCTATATATGTGTGCGC 59.325 47.826 0.00 0.00 0.00 6.09
981 2291 0.468226 TGTAACCGGCATGGAGATCC 59.532 55.000 0.00 0.00 42.00 3.36
1041 2351 2.502080 CGACTGTCGTGGACTCGC 60.502 66.667 21.30 0.00 34.72 5.03
1088 2398 3.274288 GCTGTTGCTATAACAAGGAGCT 58.726 45.455 10.56 0.00 35.08 4.09
1089 2399 2.030946 CGCTGTTGCTATAACAAGGAGC 59.969 50.000 8.72 8.72 34.80 4.70
1090 2400 2.609459 CCGCTGTTGCTATAACAAGGAG 59.391 50.000 0.00 0.00 36.97 3.69
1119 2429 3.451894 CAAGGGACCATTGCCGCC 61.452 66.667 5.85 0.00 38.59 6.13
1181 2494 3.329688 CTGCTGCTGCTGCTCTTGC 62.330 63.158 27.67 14.65 40.48 4.01
1416 2753 0.852777 CGTGGCATGCATCGTAGTAC 59.147 55.000 21.36 0.00 0.00 2.73
1417 2754 0.458260 ACGTGGCATGCATCGTAGTA 59.542 50.000 28.41 1.39 34.78 1.82
1418 2755 0.391130 AACGTGGCATGCATCGTAGT 60.391 50.000 29.23 17.79 35.49 2.73
1419 2756 0.026674 CAACGTGGCATGCATCGTAG 59.973 55.000 29.23 14.07 35.49 3.51
1420 2757 0.390472 TCAACGTGGCATGCATCGTA 60.390 50.000 29.23 17.79 35.49 3.43
1421 2758 1.638388 CTCAACGTGGCATGCATCGT 61.638 55.000 25.67 25.67 38.15 3.73
1422 2759 1.061411 CTCAACGTGGCATGCATCG 59.939 57.895 24.60 24.60 0.00 3.84
1423 2760 0.179181 CACTCAACGTGGCATGCATC 60.179 55.000 21.36 10.55 40.02 3.91
1438 2775 1.061711 ACGACGAGTATACACGCACTC 59.938 52.381 20.48 11.08 38.24 3.51
1619 2956 1.330779 CGTCGTTGAGCAGAGACACG 61.331 60.000 0.00 0.00 33.56 4.49
1807 3188 9.676195 GAGAAGGTAGACGATAAATTAGGTAAC 57.324 37.037 0.00 0.00 0.00 2.50
1811 3192 7.942990 ACAGAGAAGGTAGACGATAAATTAGG 58.057 38.462 0.00 0.00 0.00 2.69
1844 3255 5.368989 GTTCCAGTACATATAGCCAGCTTT 58.631 41.667 0.00 0.00 0.00 3.51
1845 3256 4.202367 GGTTCCAGTACATATAGCCAGCTT 60.202 45.833 0.00 0.00 0.00 3.74
1846 3257 3.325135 GGTTCCAGTACATATAGCCAGCT 59.675 47.826 0.00 0.00 0.00 4.24
1952 3387 4.397420 TGTGACACTGATAGCACCATTTT 58.603 39.130 7.20 0.00 0.00 1.82
1958 3393 8.303156 AGATATTCTATGTGACACTGATAGCAC 58.697 37.037 7.20 0.00 0.00 4.40
1961 3396 9.838975 GACAGATATTCTATGTGACACTGATAG 57.161 37.037 7.20 6.85 0.00 2.08
1989 3428 5.777449 TCCTCCACCTTGACAGATATTCTA 58.223 41.667 0.00 0.00 0.00 2.10
1990 3429 4.624913 TCCTCCACCTTGACAGATATTCT 58.375 43.478 0.00 0.00 0.00 2.40
1991 3430 5.359194 TTCCTCCACCTTGACAGATATTC 57.641 43.478 0.00 0.00 0.00 1.75
1992 3431 5.488919 TCTTTCCTCCACCTTGACAGATATT 59.511 40.000 0.00 0.00 0.00 1.28
1993 3432 5.032846 TCTTTCCTCCACCTTGACAGATAT 58.967 41.667 0.00 0.00 0.00 1.63
1994 3433 4.425772 TCTTTCCTCCACCTTGACAGATA 58.574 43.478 0.00 0.00 0.00 1.98
1995 3434 3.251484 TCTTTCCTCCACCTTGACAGAT 58.749 45.455 0.00 0.00 0.00 2.90
2002 3441 5.324832 TTGATTTCTCTTTCCTCCACCTT 57.675 39.130 0.00 0.00 0.00 3.50
2032 3471 3.120786 CGACGTTCGCCAAAAGATAAGTT 60.121 43.478 0.00 0.00 31.14 2.66
2037 3476 0.601841 ACCGACGTTCGCCAAAAGAT 60.602 50.000 0.00 0.00 38.82 2.40
2051 3490 1.077716 CATCCCCTTCCCAACCGAC 60.078 63.158 0.00 0.00 0.00 4.79
2053 3492 2.275418 CCATCCCCTTCCCAACCG 59.725 66.667 0.00 0.00 0.00 4.44
2054 3493 2.042944 GCCATCCCCTTCCCAACC 60.043 66.667 0.00 0.00 0.00 3.77
2055 3494 0.972471 CTTGCCATCCCCTTCCCAAC 60.972 60.000 0.00 0.00 0.00 3.77
2056 3495 1.387737 CTTGCCATCCCCTTCCCAA 59.612 57.895 0.00 0.00 0.00 4.12
2057 3496 0.551377 TACTTGCCATCCCCTTCCCA 60.551 55.000 0.00 0.00 0.00 4.37
2058 3497 0.853530 ATACTTGCCATCCCCTTCCC 59.146 55.000 0.00 0.00 0.00 3.97
2059 3498 2.224793 GGTATACTTGCCATCCCCTTCC 60.225 54.545 2.25 0.00 0.00 3.46
2060 3499 2.711547 AGGTATACTTGCCATCCCCTTC 59.288 50.000 2.25 0.00 0.00 3.46
2061 3500 2.443255 CAGGTATACTTGCCATCCCCTT 59.557 50.000 1.62 0.00 0.00 3.95
2063 3502 1.073923 CCAGGTATACTTGCCATCCCC 59.926 57.143 9.41 0.00 0.00 4.81
2064 3503 1.545651 GCCAGGTATACTTGCCATCCC 60.546 57.143 9.41 0.00 31.92 3.85
2065 3504 1.897560 GCCAGGTATACTTGCCATCC 58.102 55.000 9.41 0.00 31.92 3.51
2070 3509 1.749063 GGTTTGGCCAGGTATACTTGC 59.251 52.381 5.11 6.40 37.14 4.01
2071 3510 3.279434 GAGGTTTGGCCAGGTATACTTG 58.721 50.000 5.11 7.99 40.61 3.16
2072 3511 2.093128 CGAGGTTTGGCCAGGTATACTT 60.093 50.000 5.11 0.00 40.61 2.24
2073 3512 1.485066 CGAGGTTTGGCCAGGTATACT 59.515 52.381 5.11 0.00 40.61 2.12
2074 3513 1.474498 CCGAGGTTTGGCCAGGTATAC 60.474 57.143 5.11 0.40 40.61 1.47
2075 3514 0.834612 CCGAGGTTTGGCCAGGTATA 59.165 55.000 5.11 0.00 40.61 1.47
2077 3516 2.598787 CCCGAGGTTTGGCCAGGTA 61.599 63.158 5.11 0.00 40.61 3.08
2078 3517 3.966543 CCCGAGGTTTGGCCAGGT 61.967 66.667 5.11 0.00 40.61 4.00
2103 3542 2.419011 TTTTGGCTCGGGCTTGGCTA 62.419 55.000 7.48 0.00 38.73 3.93
2104 3543 3.808218 TTTTGGCTCGGGCTTGGCT 62.808 57.895 7.48 0.00 38.73 4.75
2105 3544 2.866726 TTTTTGGCTCGGGCTTGGC 61.867 57.895 7.48 0.00 38.73 4.52
2106 3545 3.453988 TTTTTGGCTCGGGCTTGG 58.546 55.556 7.48 0.00 38.73 3.61
2120 3559 0.178961 GGGCTCAGTCCCAGGTTTTT 60.179 55.000 0.00 0.00 45.82 1.94
2121 3560 1.460699 GGGCTCAGTCCCAGGTTTT 59.539 57.895 0.00 0.00 45.82 2.43
2122 3561 2.895424 CGGGCTCAGTCCCAGGTTT 61.895 63.158 5.17 0.00 46.92 3.27
2123 3562 3.322466 CGGGCTCAGTCCCAGGTT 61.322 66.667 5.17 0.00 46.92 3.50
2150 3589 1.743394 CAAAAACTAGGCCCGATGACC 59.257 52.381 0.00 0.00 0.00 4.02
2151 3590 1.743394 CCAAAAACTAGGCCCGATGAC 59.257 52.381 0.00 0.00 0.00 3.06
2152 3591 1.340600 CCCAAAAACTAGGCCCGATGA 60.341 52.381 0.00 0.00 0.00 2.92
2153 3592 1.102978 CCCAAAAACTAGGCCCGATG 58.897 55.000 0.00 0.00 0.00 3.84
2154 3593 0.683179 GCCCAAAAACTAGGCCCGAT 60.683 55.000 0.00 0.00 41.00 4.18
2159 3598 0.608130 CTTGGGCCCAAAAACTAGGC 59.392 55.000 36.16 0.00 46.37 3.93
2175 3614 2.361610 ATGTTCAGGCCGGGCTTG 60.362 61.111 30.73 23.89 36.97 4.01
2176 3615 2.361610 CATGTTCAGGCCGGGCTT 60.362 61.111 30.73 11.19 0.00 4.35
2182 3621 2.831597 GCTTTTGCATGTTCAGGCC 58.168 52.632 6.97 0.00 46.58 5.19
2202 3641 3.567579 TTTCTGAAGGGGCCTGGCG 62.568 63.158 13.40 0.00 0.00 5.69
2203 3642 1.228862 TTTTCTGAAGGGGCCTGGC 60.229 57.895 11.05 11.05 0.00 4.85
2204 3643 0.113190 AGTTTTCTGAAGGGGCCTGG 59.887 55.000 0.84 0.00 0.00 4.45
2205 3644 3.753787 AGTTTTCTGAAGGGGCCTG 57.246 52.632 0.84 0.00 0.00 4.85
2216 3655 3.716601 CCCGTCATTTTTGCAGTTTTCT 58.283 40.909 0.00 0.00 0.00 2.52
2217 3656 2.220824 GCCCGTCATTTTTGCAGTTTTC 59.779 45.455 0.00 0.00 0.00 2.29
2218 3657 2.209273 GCCCGTCATTTTTGCAGTTTT 58.791 42.857 0.00 0.00 0.00 2.43
2219 3658 1.540146 GGCCCGTCATTTTTGCAGTTT 60.540 47.619 0.00 0.00 0.00 2.66
2220 3659 0.033366 GGCCCGTCATTTTTGCAGTT 59.967 50.000 0.00 0.00 0.00 3.16
2221 3660 1.665442 GGCCCGTCATTTTTGCAGT 59.335 52.632 0.00 0.00 0.00 4.40
2222 3661 1.079888 GGGCCCGTCATTTTTGCAG 60.080 57.895 5.69 0.00 0.00 4.41
2223 3662 2.925262 CGGGCCCGTCATTTTTGCA 61.925 57.895 36.64 0.00 34.35 4.08
2224 3663 2.126110 CGGGCCCGTCATTTTTGC 60.126 61.111 36.64 0.00 34.35 3.68
2225 3664 2.571231 CCGGGCCCGTCATTTTTG 59.429 61.111 40.52 20.46 37.81 2.44
2226 3665 2.678580 CCCGGGCCCGTCATTTTT 60.679 61.111 40.52 0.00 37.81 1.94
2273 3712 3.428282 CCGAAAAAGCCCGACCCG 61.428 66.667 0.00 0.00 0.00 5.28
2274 3713 3.060000 CCCGAAAAAGCCCGACCC 61.060 66.667 0.00 0.00 0.00 4.46
2275 3714 3.744719 GCCCGAAAAAGCCCGACC 61.745 66.667 0.00 0.00 0.00 4.79
2276 3715 3.744719 GGCCCGAAAAAGCCCGAC 61.745 66.667 0.00 0.00 43.76 4.79
2298 3737 4.864334 CCATGGACAGCTCGGCCC 62.864 72.222 5.56 0.00 0.00 5.80
2301 3740 4.100084 TGGCCATGGACAGCTCGG 62.100 66.667 19.12 0.00 0.00 4.63
2302 3741 2.513204 CTGGCCATGGACAGCTCG 60.513 66.667 34.43 12.83 45.01 5.03
2307 3746 1.212688 CATTAGACCTGGCCATGGACA 59.787 52.381 22.03 22.03 0.00 4.02
2308 3747 1.477558 CCATTAGACCTGGCCATGGAC 60.478 57.143 23.24 15.32 37.20 4.02
2309 3748 0.846015 CCATTAGACCTGGCCATGGA 59.154 55.000 23.24 5.73 37.20 3.41
2310 3749 3.426903 CCATTAGACCTGGCCATGG 57.573 57.895 5.51 13.05 0.00 3.66
2316 3755 0.107703 TCGCTTGCCATTAGACCTGG 60.108 55.000 0.00 0.00 36.81 4.45
2317 3756 1.398390 GTTCGCTTGCCATTAGACCTG 59.602 52.381 0.00 0.00 0.00 4.00
2318 3757 1.739067 GTTCGCTTGCCATTAGACCT 58.261 50.000 0.00 0.00 0.00 3.85
2319 3758 0.373716 CGTTCGCTTGCCATTAGACC 59.626 55.000 0.00 0.00 0.00 3.85
2320 3759 1.076332 ACGTTCGCTTGCCATTAGAC 58.924 50.000 0.00 0.00 0.00 2.59
2321 3760 1.803334 AACGTTCGCTTGCCATTAGA 58.197 45.000 0.00 0.00 0.00 2.10
2322 3761 2.611974 AAACGTTCGCTTGCCATTAG 57.388 45.000 0.00 0.00 0.00 1.73
2323 3762 3.357166 AAAAACGTTCGCTTGCCATTA 57.643 38.095 0.00 0.00 0.00 1.90
2324 3763 2.217429 AAAAACGTTCGCTTGCCATT 57.783 40.000 0.00 0.00 0.00 3.16
2373 3812 2.364448 AAGCCGGAGAGTCCCCTC 60.364 66.667 5.05 0.00 38.04 4.30
2374 3813 2.364448 GAAGCCGGAGAGTCCCCT 60.364 66.667 5.05 0.00 31.13 4.79
2375 3814 2.364448 AGAAGCCGGAGAGTCCCC 60.364 66.667 5.05 0.00 31.13 4.81
2376 3815 2.896443 CAGAAGCCGGAGAGTCCC 59.104 66.667 5.05 0.00 31.13 4.46
2377 3816 1.965754 ATGCAGAAGCCGGAGAGTCC 61.966 60.000 5.05 0.00 41.13 3.85
2378 3817 0.529555 GATGCAGAAGCCGGAGAGTC 60.530 60.000 5.05 0.00 41.13 3.36
2379 3818 1.260538 TGATGCAGAAGCCGGAGAGT 61.261 55.000 5.05 0.00 41.13 3.24
2380 3819 0.530211 CTGATGCAGAAGCCGGAGAG 60.530 60.000 5.05 0.00 41.13 3.20
2381 3820 0.972471 TCTGATGCAGAAGCCGGAGA 60.972 55.000 5.05 0.00 37.57 3.71
2382 3821 0.107993 TTCTGATGCAGAAGCCGGAG 60.108 55.000 5.05 0.00 44.27 4.63
2383 3822 1.982430 TTCTGATGCAGAAGCCGGA 59.018 52.632 5.05 0.00 44.27 5.14
2384 3823 4.623814 TTCTGATGCAGAAGCCGG 57.376 55.556 5.81 0.00 44.27 6.13
2395 3834 1.502231 GCCGTATGCATCGTTCTGAT 58.498 50.000 0.19 0.00 40.77 2.90
2396 3835 0.529773 GGCCGTATGCATCGTTCTGA 60.530 55.000 0.19 0.00 43.89 3.27
2397 3836 0.809636 TGGCCGTATGCATCGTTCTG 60.810 55.000 0.19 0.00 43.89 3.02
2398 3837 0.810031 GTGGCCGTATGCATCGTTCT 60.810 55.000 0.19 0.00 43.89 3.01
2399 3838 1.087202 TGTGGCCGTATGCATCGTTC 61.087 55.000 0.19 2.49 43.89 3.95
2400 3839 0.463654 ATGTGGCCGTATGCATCGTT 60.464 50.000 0.19 0.00 43.89 3.85
2401 3840 0.391228 TATGTGGCCGTATGCATCGT 59.609 50.000 0.19 0.00 43.89 3.73
2402 3841 1.507562 TTATGTGGCCGTATGCATCG 58.492 50.000 0.19 7.03 43.89 3.84
2403 3842 5.621197 TTATTTATGTGGCCGTATGCATC 57.379 39.130 0.19 0.00 43.89 3.91
2404 3843 6.588719 ATTTATTTATGTGGCCGTATGCAT 57.411 33.333 3.79 3.79 43.89 3.96
2405 3844 7.511959 TTATTTATTTATGTGGCCGTATGCA 57.488 32.000 0.00 0.00 43.89 3.96
2406 3845 8.804688 TTTTATTTATTTATGTGGCCGTATGC 57.195 30.769 0.00 0.00 40.16 3.14
2410 3849 9.138596 ACCTATTTTATTTATTTATGTGGCCGT 57.861 29.630 0.00 0.00 0.00 5.68
2411 3850 9.974980 AACCTATTTTATTTATTTATGTGGCCG 57.025 29.630 0.00 0.00 0.00 6.13
2430 3869 9.807649 GCAAGATTTATCATTGTTGAACCTATT 57.192 29.630 0.00 0.00 34.96 1.73
2431 3870 8.416329 GGCAAGATTTATCATTGTTGAACCTAT 58.584 33.333 0.00 0.00 34.96 2.57
2432 3871 7.615365 AGGCAAGATTTATCATTGTTGAACCTA 59.385 33.333 0.00 0.00 34.96 3.08
2433 3872 6.438425 AGGCAAGATTTATCATTGTTGAACCT 59.562 34.615 0.00 0.00 34.96 3.50
2434 3873 6.633856 AGGCAAGATTTATCATTGTTGAACC 58.366 36.000 0.00 0.00 34.96 3.62
2435 3874 8.538409 AAAGGCAAGATTTATCATTGTTGAAC 57.462 30.769 0.00 0.00 34.96 3.18
2436 3875 9.558396 AAAAAGGCAAGATTTATCATTGTTGAA 57.442 25.926 0.00 0.00 34.96 2.69
2437 3876 8.991026 CAAAAAGGCAAGATTTATCATTGTTGA 58.009 29.630 0.00 0.00 36.00 3.18
2438 3877 8.776470 ACAAAAAGGCAAGATTTATCATTGTTG 58.224 29.630 0.00 0.00 0.00 3.33
2439 3878 8.907222 ACAAAAAGGCAAGATTTATCATTGTT 57.093 26.923 0.00 0.00 0.00 2.83
2440 3879 7.329226 CGACAAAAAGGCAAGATTTATCATTGT 59.671 33.333 0.00 0.00 0.00 2.71
2441 3880 7.329226 ACGACAAAAAGGCAAGATTTATCATTG 59.671 33.333 0.00 0.00 0.00 2.82
2442 3881 7.378181 ACGACAAAAAGGCAAGATTTATCATT 58.622 30.769 0.00 0.00 0.00 2.57
2453 3892 9.187455 GAAGAAAATAATACGACAAAAAGGCAA 57.813 29.630 0.00 0.00 0.00 4.52
2484 3924 8.539770 TCTTTAGAAACACATGACATCTTCTC 57.460 34.615 0.00 0.00 0.00 2.87
2490 3930 7.599998 GGCAATTTCTTTAGAAACACATGACAT 59.400 33.333 7.05 0.00 45.55 3.06
2584 4044 7.380602 GCTGGTTGATGCTTATGTTAATTCATC 59.619 37.037 0.00 0.00 0.00 2.92
2585 4045 7.205297 GCTGGTTGATGCTTATGTTAATTCAT 58.795 34.615 0.00 0.00 0.00 2.57
2596 4079 4.888326 AATTTTGGCTGGTTGATGCTTA 57.112 36.364 0.00 0.00 0.00 3.09
2598 4081 3.577848 TGTAATTTTGGCTGGTTGATGCT 59.422 39.130 0.00 0.00 0.00 3.79
2599 4082 3.924144 TGTAATTTTGGCTGGTTGATGC 58.076 40.909 0.00 0.00 0.00 3.91
2608 4091 1.544246 GGCGTCCTTGTAATTTTGGCT 59.456 47.619 0.00 0.00 0.00 4.75
2613 4096 3.551846 CCTATGGGCGTCCTTGTAATTT 58.448 45.455 7.97 0.00 0.00 1.82
2614 4097 3.208747 CCTATGGGCGTCCTTGTAATT 57.791 47.619 7.97 0.00 0.00 1.40
2651 4136 3.744426 GCCAACGCATTATATCTTACCGT 59.256 43.478 0.00 0.00 34.03 4.83
2669 4159 2.763448 AGGCTTAGTTTGTTGTTGCCAA 59.237 40.909 0.00 0.00 41.12 4.52
2765 4256 0.036164 CATGTTCTTGTCCCCGGTGA 59.964 55.000 0.00 0.00 0.00 4.02
2789 4280 3.332187 TCAGTCTTCCTCTCTCCTCAGAA 59.668 47.826 0.00 0.00 0.00 3.02
2793 4284 2.752903 GTGTCAGTCTTCCTCTCTCCTC 59.247 54.545 0.00 0.00 0.00 3.71
2816 4307 4.240175 ACTCAAGACCTCTTACGTCAAC 57.760 45.455 0.00 0.00 34.28 3.18
2817 4308 4.340097 TGAACTCAAGACCTCTTACGTCAA 59.660 41.667 0.00 0.00 34.28 3.18
2819 4310 4.500603 TGAACTCAAGACCTCTTACGTC 57.499 45.455 0.00 0.00 34.28 4.34
2820 4311 4.931661 TTGAACTCAAGACCTCTTACGT 57.068 40.909 0.00 0.00 34.28 3.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.