Multiple sequence alignment - TraesCS4A01G177900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G177900 chr4A 100.000 4059 0 0 1 4059 449893171 449889113 0.000000e+00 7496.0
1 TraesCS4A01G177900 chr4B 91.583 3386 175 51 1 3324 181696286 181692949 0.000000e+00 4573.0
2 TraesCS4A01G177900 chr4B 80.357 392 25 23 3350 3714 181692860 181692494 2.420000e-62 250.0
3 TraesCS4A01G177900 chr4B 92.222 90 7 0 3712 3801 181692459 181692370 1.180000e-25 128.0
4 TraesCS4A01G177900 chr4D 94.150 1983 80 21 725 2692 119414743 119412782 0.000000e+00 2987.0
5 TraesCS4A01G177900 chr4D 91.049 648 41 9 2689 3324 119412702 119412060 0.000000e+00 859.0
6 TraesCS4A01G177900 chr4D 93.538 325 13 4 4 321 119415432 119415109 1.020000e-130 477.0
7 TraesCS4A01G177900 chr4D 80.503 318 22 14 3333 3614 119411968 119411655 1.480000e-49 207.0
8 TraesCS4A01G177900 chr4D 90.526 95 9 0 3707 3801 119411551 119411457 4.260000e-25 126.0
9 TraesCS4A01G177900 chr4D 88.158 76 2 5 3646 3714 119411656 119411581 2.600000e-12 84.2
10 TraesCS4A01G177900 chr2B 88.679 159 17 1 3876 4034 63134574 63134417 4.140000e-45 193.0
11 TraesCS4A01G177900 chr1D 84.656 189 23 2 3877 4059 316299133 316299321 2.490000e-42 183.0
12 TraesCS4A01G177900 chr2D 81.818 88 14 2 3903 3989 651725558 651725644 5.630000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G177900 chr4A 449889113 449893171 4058 True 7496.000000 7496 100.000 1 4059 1 chr4A.!!$R1 4058
1 TraesCS4A01G177900 chr4B 181692370 181696286 3916 True 1650.333333 4573 88.054 1 3801 3 chr4B.!!$R1 3800
2 TraesCS4A01G177900 chr4D 119411457 119415432 3975 True 790.033333 2987 89.654 4 3801 6 chr4D.!!$R1 3797

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
742 770 0.740516 GCAGGCTGTTGCTCTCTCTC 60.741 60.0 17.16 0.00 40.89 3.20 F
1329 1375 0.396435 TCAACACCGAGCTGGAATGT 59.604 50.0 8.91 4.75 42.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 2267 0.178964 CACCAACCATCCCAGGTGTT 60.179 55.0 0.0 0.0 44.95 3.32 R
3228 3386 0.039618 TCCATCCCTTGTTCCCAAGC 59.960 55.0 0.0 0.0 45.57 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 69 9.333724 TCTGTCTTAAAGTTACAAAAGTAAGGG 57.666 33.333 0.00 0.00 0.00 3.95
64 70 8.454570 TGTCTTAAAGTTACAAAAGTAAGGGG 57.545 34.615 0.00 0.00 0.00 4.79
99 111 5.535333 ACAAATTGAGCCTTGAACATGAAG 58.465 37.500 0.00 0.00 0.00 3.02
109 121 5.675575 GCCTTGAACATGAAGTGCTTATCTG 60.676 44.000 0.00 0.00 0.00 2.90
147 159 1.761449 TTCTGGTGTGCTGCTTCAAA 58.239 45.000 0.00 0.00 0.00 2.69
201 213 8.865420 TCTCACATGGTCTAGAAGTATATACC 57.135 38.462 9.32 0.00 0.00 2.73
250 262 2.743928 GTCAACTGCCTGCCCTCG 60.744 66.667 0.00 0.00 0.00 4.63
338 350 4.401202 TCTTGTCTTTCCACCTGTTTTTCC 59.599 41.667 0.00 0.00 0.00 3.13
343 355 1.007387 CCACCTGTTTTTCCGCAGC 60.007 57.895 0.00 0.00 0.00 5.25
345 357 1.152756 ACCTGTTTTTCCGCAGCCT 60.153 52.632 0.00 0.00 0.00 4.58
386 398 6.500589 CCTAAGATGGGATTACAGGAAGAA 57.499 41.667 0.00 0.00 0.00 2.52
387 399 6.292150 CCTAAGATGGGATTACAGGAAGAAC 58.708 44.000 0.00 0.00 0.00 3.01
388 400 4.779993 AGATGGGATTACAGGAAGAACC 57.220 45.455 0.00 0.00 39.35 3.62
408 420 8.310122 AGAACCTCAACCAATGCATAAATAAT 57.690 30.769 0.00 0.00 0.00 1.28
409 421 8.416329 AGAACCTCAACCAATGCATAAATAATC 58.584 33.333 0.00 0.00 0.00 1.75
423 439 7.017645 GCATAAATAATCCAGATGCAAGTACG 58.982 38.462 0.00 0.00 41.98 3.67
434 450 1.868498 TGCAAGTACGCACCAAGTTAC 59.132 47.619 0.00 0.00 36.86 2.50
442 458 3.219281 ACGCACCAAGTTACAGGAAATT 58.781 40.909 1.00 0.00 0.00 1.82
456 480 9.379791 GTTACAGGAAATTACTGCATAACTAGT 57.620 33.333 4.88 0.00 39.55 2.57
513 538 4.019141 AGGGACGGTAATTACCATTTGACA 60.019 41.667 29.56 0.00 46.80 3.58
520 545 7.494625 ACGGTAATTACCATTTGACATGTAGAG 59.505 37.037 29.56 12.76 46.80 2.43
548 573 6.146837 GAGTAGATCTCGTATTGCAATGCAAT 59.853 38.462 32.12 32.12 45.31 3.56
558 583 3.455990 TGCAATGCAATGAAACAGTGT 57.544 38.095 5.01 0.00 34.76 3.55
559 584 4.581077 TGCAATGCAATGAAACAGTGTA 57.419 36.364 5.01 0.00 34.76 2.90
591 616 7.321034 GTGTTTTCGGTTGGTTAAATAGTAACG 59.679 37.037 0.00 0.00 0.00 3.18
629 654 1.345741 TGTCTCTGCTTTCTGGTCCTG 59.654 52.381 0.00 0.00 0.00 3.86
632 657 2.037772 TCTCTGCTTTCTGGTCCTGTTC 59.962 50.000 0.00 0.00 0.00 3.18
640 665 1.353358 TCTGGTCCTGTTCGTCCTCTA 59.647 52.381 0.00 0.00 0.00 2.43
641 666 2.025226 TCTGGTCCTGTTCGTCCTCTAT 60.025 50.000 0.00 0.00 0.00 1.98
642 667 2.099921 CTGGTCCTGTTCGTCCTCTATG 59.900 54.545 0.00 0.00 0.00 2.23
644 669 2.100989 GTCCTGTTCGTCCTCTATGGT 58.899 52.381 0.00 0.00 37.07 3.55
649 676 2.430694 TGTTCGTCCTCTATGGTCATGG 59.569 50.000 0.00 0.00 37.07 3.66
658 685 1.072173 CTATGGTCATGGCCGATTGGA 59.928 52.381 12.67 0.00 37.49 3.53
670 697 2.872038 GCCGATTGGACACTCTCAACTT 60.872 50.000 1.98 0.00 37.49 2.66
679 706 2.370189 ACACTCTCAACTTAAGCAGCCT 59.630 45.455 1.29 0.00 0.00 4.58
681 708 3.929610 CACTCTCAACTTAAGCAGCCTAC 59.070 47.826 1.29 0.00 0.00 3.18
683 710 2.903784 TCTCAACTTAAGCAGCCTACCA 59.096 45.455 1.29 0.00 0.00 3.25
684 711 3.003480 CTCAACTTAAGCAGCCTACCAC 58.997 50.000 1.29 0.00 0.00 4.16
686 713 2.474410 ACTTAAGCAGCCTACCACAC 57.526 50.000 1.29 0.00 0.00 3.82
693 720 1.276622 CAGCCTACCACACCCTACTT 58.723 55.000 0.00 0.00 0.00 2.24
694 721 1.628846 CAGCCTACCACACCCTACTTT 59.371 52.381 0.00 0.00 0.00 2.66
695 722 1.628846 AGCCTACCACACCCTACTTTG 59.371 52.381 0.00 0.00 0.00 2.77
696 723 1.949079 GCCTACCACACCCTACTTTGC 60.949 57.143 0.00 0.00 0.00 3.68
697 724 1.349688 CCTACCACACCCTACTTTGCA 59.650 52.381 0.00 0.00 0.00 4.08
699 726 2.675658 ACCACACCCTACTTTGCATT 57.324 45.000 0.00 0.00 0.00 3.56
742 770 0.740516 GCAGGCTGTTGCTCTCTCTC 60.741 60.000 17.16 0.00 40.89 3.20
743 771 0.896923 CAGGCTGTTGCTCTCTCTCT 59.103 55.000 6.28 0.00 39.59 3.10
784 812 9.554395 TTGACACTGATAATTCTCTTGTTTGTA 57.446 29.630 0.00 0.00 0.00 2.41
785 813 8.988934 TGACACTGATAATTCTCTTGTTTGTAC 58.011 33.333 0.00 0.00 0.00 2.90
786 814 9.209175 GACACTGATAATTCTCTTGTTTGTACT 57.791 33.333 0.00 0.00 0.00 2.73
926 960 4.841246 ACCTTCCTTTCTGACACTGAGTAT 59.159 41.667 0.00 0.00 0.00 2.12
1023 1063 1.335145 AGCAGCAGGTTTTGAGCAAT 58.665 45.000 0.00 0.00 33.41 3.56
1090 1136 1.584380 GGTTCCAAGAGCAGCAGCAG 61.584 60.000 3.17 0.00 45.49 4.24
1091 1137 1.970114 TTCCAAGAGCAGCAGCAGC 60.970 57.895 3.17 0.46 45.49 5.25
1092 1138 2.671963 CCAAGAGCAGCAGCAGCA 60.672 61.111 12.92 0.00 45.49 4.41
1093 1139 2.691771 CCAAGAGCAGCAGCAGCAG 61.692 63.158 12.92 0.00 45.49 4.24
1102 1148 2.908428 CAGCAGCAGCAACACCCA 60.908 61.111 3.17 0.00 45.49 4.51
1329 1375 0.396435 TCAACACCGAGCTGGAATGT 59.604 50.000 8.91 4.75 42.00 2.71
1383 1429 4.758251 CGCTGCACCATCACCCGA 62.758 66.667 0.00 0.00 0.00 5.14
1405 1451 1.201424 TCAGGAGCAGCATGACATCT 58.799 50.000 0.00 0.00 39.69 2.90
1418 1464 4.023707 GCATGACATCTATGTAAGTTGGGC 60.024 45.833 0.00 0.00 41.95 5.36
1441 1487 2.613977 CCATGTCACCACAGACCTCTTC 60.614 54.545 0.00 0.00 37.73 2.87
1486 1532 7.763985 TCTTCTTCCATTTCCTGAAAACAAAAC 59.236 33.333 0.00 0.00 33.56 2.43
1487 1533 7.181569 TCTTCCATTTCCTGAAAACAAAACT 57.818 32.000 0.00 0.00 33.56 2.66
1488 1534 7.041107 TCTTCCATTTCCTGAAAACAAAACTG 58.959 34.615 0.00 0.00 33.56 3.16
1499 1546 9.757227 CCTGAAAACAAAACTGGATTTATGTAA 57.243 29.630 0.00 0.00 0.00 2.41
1529 1576 2.065899 TTACCTGCAACCTGCTTTGT 57.934 45.000 0.00 0.00 45.31 2.83
1535 1582 1.953686 TGCAACCTGCTTTGTTCTACC 59.046 47.619 0.00 0.00 45.31 3.18
1536 1583 1.953686 GCAACCTGCTTTGTTCTACCA 59.046 47.619 0.00 0.00 40.96 3.25
1537 1584 2.558359 GCAACCTGCTTTGTTCTACCAT 59.442 45.455 0.00 0.00 40.96 3.55
1538 1585 3.612479 GCAACCTGCTTTGTTCTACCATG 60.612 47.826 0.00 0.00 40.96 3.66
1539 1586 3.788227 ACCTGCTTTGTTCTACCATGA 57.212 42.857 0.00 0.00 0.00 3.07
1540 1587 3.679389 ACCTGCTTTGTTCTACCATGAG 58.321 45.455 0.00 0.00 0.00 2.90
1541 1588 3.327757 ACCTGCTTTGTTCTACCATGAGA 59.672 43.478 0.00 0.00 0.00 3.27
1542 1589 4.018960 ACCTGCTTTGTTCTACCATGAGAT 60.019 41.667 0.00 0.00 0.00 2.75
1543 1590 4.334759 CCTGCTTTGTTCTACCATGAGATG 59.665 45.833 0.00 0.00 0.00 2.90
1544 1591 4.910195 TGCTTTGTTCTACCATGAGATGT 58.090 39.130 0.00 0.00 0.00 3.06
1545 1592 4.937620 TGCTTTGTTCTACCATGAGATGTC 59.062 41.667 0.00 0.00 0.00 3.06
1546 1593 4.333926 GCTTTGTTCTACCATGAGATGTCC 59.666 45.833 0.00 0.00 0.00 4.02
1547 1594 5.491070 CTTTGTTCTACCATGAGATGTCCA 58.509 41.667 0.00 0.00 0.00 4.02
1548 1595 5.698741 TTGTTCTACCATGAGATGTCCAT 57.301 39.130 0.00 0.00 0.00 3.41
1549 1596 5.027293 TGTTCTACCATGAGATGTCCATG 57.973 43.478 0.00 0.00 40.66 3.66
1550 1597 4.716287 TGTTCTACCATGAGATGTCCATGA 59.284 41.667 0.00 0.00 42.89 3.07
1551 1598 4.944619 TCTACCATGAGATGTCCATGAC 57.055 45.455 0.00 0.00 42.89 3.06
1575 1622 4.450757 TCCATGTTCATTCACAACTGTACG 59.549 41.667 0.00 0.00 0.00 3.67
1660 1707 2.115911 TGGCGCAACGAAACAACCT 61.116 52.632 10.83 0.00 0.00 3.50
1814 1867 0.814410 TGAACAAGGCAACCGCGTTA 60.814 50.000 4.92 0.00 44.11 3.18
1960 2013 1.463674 ATTGCCATGAAACGACCCTC 58.536 50.000 0.00 0.00 0.00 4.30
1963 2016 0.672401 GCCATGAAACGACCCTCGAA 60.672 55.000 0.00 0.00 43.74 3.71
2000 2054 9.171701 GACACGATTTCTTACTAGATGTATGTC 57.828 37.037 0.00 0.00 0.00 3.06
2163 2221 4.718961 ACTCTGGTAATCAAGCAAACACT 58.281 39.130 0.00 0.00 34.56 3.55
2164 2222 5.865085 ACTCTGGTAATCAAGCAAACACTA 58.135 37.500 0.00 0.00 34.56 2.74
2165 2223 6.476378 ACTCTGGTAATCAAGCAAACACTAT 58.524 36.000 0.00 0.00 34.56 2.12
2168 2226 9.764363 CTCTGGTAATCAAGCAAACACTATATA 57.236 33.333 0.00 0.00 34.56 0.86
2193 2251 8.474006 AATATTTAGTTCCAATTGCCGTTTTC 57.526 30.769 0.00 0.00 0.00 2.29
2201 2259 3.754323 CCAATTGCCGTTTTCTACCAGTA 59.246 43.478 0.00 0.00 0.00 2.74
2209 2267 4.501915 CCGTTTTCTACCAGTACAAGGACA 60.502 45.833 10.94 0.00 0.00 4.02
2210 2268 5.051816 CGTTTTCTACCAGTACAAGGACAA 58.948 41.667 10.94 0.00 0.00 3.18
2213 2271 4.595762 TCTACCAGTACAAGGACAACAC 57.404 45.455 10.94 0.00 0.00 3.32
2240 2298 2.692024 TGGTTGGTGAGGTGGTTACTA 58.308 47.619 0.00 0.00 0.00 1.82
2242 2300 3.181452 TGGTTGGTGAGGTGGTTACTAAC 60.181 47.826 0.00 0.00 35.76 2.34
2270 2329 4.410492 AAGCTGCTGTAAAATTCAGTCG 57.590 40.909 1.35 0.00 35.60 4.18
2276 2335 5.000591 TGCTGTAAAATTCAGTCGGATGAA 58.999 37.500 5.82 5.82 43.04 2.57
2318 2377 2.224159 TTGGCCGGAGAGGAAAGCT 61.224 57.895 5.05 0.00 45.00 3.74
2366 2425 0.608640 ACCGGGATCTCAAGTGTGTC 59.391 55.000 6.32 0.00 0.00 3.67
2512 2571 4.751767 TTTGGGTGCTGAAACTTGATTT 57.248 36.364 0.00 0.00 0.00 2.17
2513 2572 5.860941 TTTGGGTGCTGAAACTTGATTTA 57.139 34.783 0.00 0.00 0.00 1.40
2515 2574 5.389859 TGGGTGCTGAAACTTGATTTATG 57.610 39.130 0.00 0.00 0.00 1.90
2613 2675 6.093633 GCTATAAACAGTTTGGAATTCCGACT 59.906 38.462 21.44 21.44 39.43 4.18
2713 2861 8.425577 AGTATCTGTGTACTTGATATTTGCAC 57.574 34.615 0.00 0.00 30.95 4.57
2735 2883 3.365969 CCAAACAGAGATTAACCGGTTGC 60.366 47.826 30.08 17.93 0.00 4.17
2745 2893 1.025812 AACCGGTTGCGAATTGTTCA 58.974 45.000 21.56 0.00 0.00 3.18
2995 3144 0.606604 TGTAGTTTGCGGGAGGACTC 59.393 55.000 0.00 0.00 0.00 3.36
3085 3239 7.943413 ACTAGATGAAATGATTGTCGATGAG 57.057 36.000 0.00 0.00 0.00 2.90
3091 3245 5.578336 TGAAATGATTGTCGATGAGTGAGAC 59.422 40.000 0.00 0.00 35.61 3.36
3097 3251 2.552743 TGTCGATGAGTGAGACGAAACT 59.447 45.455 0.00 0.00 37.69 2.66
3139 3293 8.097038 AGCTTCTCAGAGTACAAATTAATGTCA 58.903 33.333 0.00 0.00 34.75 3.58
3140 3294 8.171840 GCTTCTCAGAGTACAAATTAATGTCAC 58.828 37.037 0.00 0.00 34.75 3.67
3143 3297 6.460781 TCAGAGTACAAATTAATGTCACGGT 58.539 36.000 0.00 0.00 34.75 4.83
3147 3301 8.287503 AGAGTACAAATTAATGTCACGGTTTTC 58.712 33.333 0.00 0.00 34.75 2.29
3164 3321 5.051907 CGGTTTTCGTATGCATGTAGTCTAC 60.052 44.000 10.16 2.81 0.00 2.59
3170 3327 7.563888 TCGTATGCATGTAGTCTACTAGTTT 57.436 36.000 10.16 0.00 0.00 2.66
3172 3329 8.554528 TCGTATGCATGTAGTCTACTAGTTTAC 58.445 37.037 10.16 0.00 0.00 2.01
3173 3330 7.802251 CGTATGCATGTAGTCTACTAGTTTACC 59.198 40.741 10.16 0.00 0.00 2.85
3223 3381 1.929482 GCTACTATTCTACGCGGCACC 60.929 57.143 12.47 0.00 0.00 5.01
3340 3583 4.941263 TGTGCTCCAAAATGAGTACCATAC 59.059 41.667 6.78 0.00 44.43 2.39
3342 3585 5.414454 GTGCTCCAAAATGAGTACCATACAA 59.586 40.000 0.00 0.00 40.73 2.41
3345 3588 6.374333 GCTCCAAAATGAGTACCATACAAGAA 59.626 38.462 0.00 0.00 34.45 2.52
3346 3589 7.067494 GCTCCAAAATGAGTACCATACAAGAAT 59.933 37.037 0.00 0.00 34.45 2.40
3347 3590 9.613428 CTCCAAAATGAGTACCATACAAGAATA 57.387 33.333 0.00 0.00 34.45 1.75
3359 3610 8.856153 ACCATACAAGAATATGTTGTAACACA 57.144 30.769 12.59 0.00 42.24 3.72
3399 3650 4.634443 GGACGTATGAAGTTTATGGCAAGT 59.366 41.667 0.00 0.00 0.00 3.16
3429 3680 3.987868 GCACAAAGTCGACAGTAGATCAA 59.012 43.478 19.50 0.00 0.00 2.57
3431 3682 4.090642 CACAAAGTCGACAGTAGATCAAGC 59.909 45.833 19.50 0.00 0.00 4.01
3432 3683 4.237724 CAAAGTCGACAGTAGATCAAGCA 58.762 43.478 19.50 0.00 0.00 3.91
3435 3686 3.067461 AGTCGACAGTAGATCAAGCATCC 59.933 47.826 19.50 0.00 30.71 3.51
3436 3687 2.033424 TCGACAGTAGATCAAGCATCCG 59.967 50.000 0.00 0.00 30.71 4.18
3437 3688 2.223595 CGACAGTAGATCAAGCATCCGT 60.224 50.000 0.00 0.00 30.71 4.69
3473 3736 2.531206 TGCCGCTAACAAACAAACAAC 58.469 42.857 0.00 0.00 0.00 3.32
3477 3757 4.416620 CCGCTAACAAACAAACAACTCAA 58.583 39.130 0.00 0.00 0.00 3.02
3492 3772 4.211389 CAACTCAATTTCGTTTGGACTCG 58.789 43.478 0.00 0.00 0.00 4.18
3519 3799 7.793927 TTTTTCCAACTCAACAAAAACAAGT 57.206 28.000 0.00 0.00 0.00 3.16
3520 3800 7.414814 TTTTCCAACTCAACAAAAACAAGTC 57.585 32.000 0.00 0.00 0.00 3.01
3521 3801 5.713792 TCCAACTCAACAAAAACAAGTCA 57.286 34.783 0.00 0.00 0.00 3.41
3541 3821 6.616577 AGTCAAAAGGATTTAAGGGTTACCA 58.383 36.000 2.98 0.00 37.28 3.25
3548 3831 7.039722 AGGATTTAAGGGTTACCATTCAAGA 57.960 36.000 4.01 0.00 40.13 3.02
3594 3877 4.994852 ACTAAAATTTGACGCTGCTACAGA 59.005 37.500 0.00 0.00 32.44 3.41
3606 3890 0.103208 GCTACAGATAGGCGCACTGT 59.897 55.000 23.66 23.66 45.06 3.55
3607 3891 1.866063 GCTACAGATAGGCGCACTGTC 60.866 57.143 23.79 18.42 42.65 3.51
3608 3892 1.405463 CTACAGATAGGCGCACTGTCA 59.595 52.381 23.79 13.86 42.65 3.58
3609 3893 0.108615 ACAGATAGGCGCACTGTCAC 60.109 55.000 19.28 0.00 40.19 3.67
3610 3894 0.807667 CAGATAGGCGCACTGTCACC 60.808 60.000 19.28 0.00 39.57 4.02
3611 3895 0.972983 AGATAGGCGCACTGTCACCT 60.973 55.000 19.28 4.93 39.57 4.00
3612 3896 0.108138 GATAGGCGCACTGTCACCTT 60.108 55.000 10.83 0.00 37.29 3.50
3613 3897 0.108138 ATAGGCGCACTGTCACCTTC 60.108 55.000 10.83 0.00 33.60 3.46
3614 3898 1.185618 TAGGCGCACTGTCACCTTCT 61.186 55.000 10.83 0.00 33.60 2.85
3615 3899 1.598130 GGCGCACTGTCACCTTCTT 60.598 57.895 10.83 0.00 0.00 2.52
3616 3900 1.571460 GCGCACTGTCACCTTCTTG 59.429 57.895 0.30 0.00 0.00 3.02
3617 3901 1.571460 CGCACTGTCACCTTCTTGC 59.429 57.895 0.00 0.00 0.00 4.01
3618 3902 1.571460 GCACTGTCACCTTCTTGCG 59.429 57.895 0.00 0.00 0.00 4.85
3619 3903 1.160329 GCACTGTCACCTTCTTGCGT 61.160 55.000 0.00 0.00 0.00 5.24
3620 3904 1.299541 CACTGTCACCTTCTTGCGTT 58.700 50.000 0.00 0.00 0.00 4.84
3621 3905 1.003545 CACTGTCACCTTCTTGCGTTG 60.004 52.381 0.00 0.00 0.00 4.10
3622 3906 0.040958 CTGTCACCTTCTTGCGTTGC 60.041 55.000 0.00 0.00 0.00 4.17
3623 3907 1.082756 GTCACCTTCTTGCGTTGCG 60.083 57.895 0.00 0.00 0.00 4.85
3653 3937 4.752879 CGACCGCCGTCCACCAAT 62.753 66.667 0.00 0.00 35.40 3.16
3661 3945 1.024579 CCGTCCACCAATACACAGCC 61.025 60.000 0.00 0.00 0.00 4.85
3744 4072 2.036256 GGGCAGTGGCACCAATCT 59.964 61.111 19.48 0.00 43.71 2.40
3759 4087 3.978241 ATCTGAGCCCCCTGCCCTT 62.978 63.158 0.00 0.00 42.71 3.95
3791 4119 2.587194 CTTCTCATGCCCCGCTCG 60.587 66.667 0.00 0.00 0.00 5.03
3801 4129 4.735132 CCCGCTCGTCCGCTTTCA 62.735 66.667 0.00 0.00 0.00 2.69
3802 4130 3.181967 CCGCTCGTCCGCTTTCAG 61.182 66.667 0.00 0.00 0.00 3.02
3803 4131 3.843240 CGCTCGTCCGCTTTCAGC 61.843 66.667 0.00 0.00 38.02 4.26
3812 4140 3.712881 GCTTTCAGCGACGGCGTT 61.713 61.111 16.19 1.65 46.35 4.84
3813 4141 2.470286 CTTTCAGCGACGGCGTTC 59.530 61.111 16.19 9.72 46.35 3.95
3814 4142 3.335259 CTTTCAGCGACGGCGTTCG 62.335 63.158 16.19 19.62 46.35 3.95
3823 4151 3.470267 CGGCGTTCGTGCTGTATT 58.530 55.556 0.00 0.00 36.47 1.89
3824 4152 1.785321 CGGCGTTCGTGCTGTATTT 59.215 52.632 0.00 0.00 36.47 1.40
3825 4153 0.165079 CGGCGTTCGTGCTGTATTTT 59.835 50.000 0.00 0.00 36.47 1.82
3826 4154 1.399215 CGGCGTTCGTGCTGTATTTTT 60.399 47.619 0.00 0.00 36.47 1.94
3846 4174 4.806342 TTTTTACCTGAGAACAGCGTTC 57.194 40.909 11.79 11.79 42.25 3.95
3847 4175 2.060326 TTACCTGAGAACAGCGTTCG 57.940 50.000 13.23 4.87 42.25 3.95
3848 4176 0.956633 TACCTGAGAACAGCGTTCGT 59.043 50.000 13.23 9.11 42.25 3.85
3849 4177 0.956633 ACCTGAGAACAGCGTTCGTA 59.043 50.000 13.23 7.64 42.25 3.43
3850 4178 1.335689 ACCTGAGAACAGCGTTCGTAC 60.336 52.381 13.23 10.39 42.25 3.67
3851 4179 1.068472 CCTGAGAACAGCGTTCGTACT 60.068 52.381 13.23 0.11 42.25 2.73
3852 4180 2.243407 CTGAGAACAGCGTTCGTACTC 58.757 52.381 13.23 7.98 37.33 2.59
3853 4181 1.878088 TGAGAACAGCGTTCGTACTCT 59.122 47.619 13.23 0.00 0.00 3.24
3854 4182 3.069289 TGAGAACAGCGTTCGTACTCTA 58.931 45.455 13.23 0.00 0.00 2.43
3855 4183 3.124806 TGAGAACAGCGTTCGTACTCTAG 59.875 47.826 13.23 0.00 0.00 2.43
3856 4184 2.419324 AGAACAGCGTTCGTACTCTAGG 59.581 50.000 13.23 0.00 0.00 3.02
3857 4185 1.818642 ACAGCGTTCGTACTCTAGGT 58.181 50.000 0.00 0.00 0.00 3.08
3858 4186 2.977914 ACAGCGTTCGTACTCTAGGTA 58.022 47.619 0.00 0.00 0.00 3.08
3859 4187 3.338249 ACAGCGTTCGTACTCTAGGTAA 58.662 45.455 0.00 0.00 31.56 2.85
3860 4188 3.126000 ACAGCGTTCGTACTCTAGGTAAC 59.874 47.826 0.00 0.00 31.56 2.50
3884 4212 3.896648 TTTTCTGTGTCGAGGAAATGC 57.103 42.857 0.00 0.00 0.00 3.56
3885 4213 1.808411 TTCTGTGTCGAGGAAATGCC 58.192 50.000 0.00 0.00 0.00 4.40
3886 4214 0.684535 TCTGTGTCGAGGAAATGCCA 59.315 50.000 0.00 0.00 40.02 4.92
3887 4215 0.798776 CTGTGTCGAGGAAATGCCAC 59.201 55.000 0.00 0.00 40.02 5.01
3888 4216 0.107643 TGTGTCGAGGAAATGCCACA 59.892 50.000 0.00 0.00 40.02 4.17
3889 4217 1.271325 TGTGTCGAGGAAATGCCACAT 60.271 47.619 0.00 0.00 40.02 3.21
3890 4218 1.812571 GTGTCGAGGAAATGCCACATT 59.187 47.619 0.00 0.00 40.02 2.71
3891 4219 2.228822 GTGTCGAGGAAATGCCACATTT 59.771 45.455 5.28 5.28 40.02 2.32
3892 4220 2.890311 TGTCGAGGAAATGCCACATTTT 59.110 40.909 6.97 0.00 40.02 1.82
3893 4221 3.320541 TGTCGAGGAAATGCCACATTTTT 59.679 39.130 6.97 0.06 40.02 1.94
3910 4238 2.930826 TTTTCTCGGACTTTGCTCCT 57.069 45.000 0.00 0.00 0.00 3.69
3911 4239 4.345859 TTTTTCTCGGACTTTGCTCCTA 57.654 40.909 0.00 0.00 0.00 2.94
3912 4240 3.314541 TTTCTCGGACTTTGCTCCTAC 57.685 47.619 0.00 0.00 0.00 3.18
3913 4241 1.919240 TCTCGGACTTTGCTCCTACA 58.081 50.000 0.00 0.00 0.00 2.74
3914 4242 1.819288 TCTCGGACTTTGCTCCTACAG 59.181 52.381 0.00 0.00 0.00 2.74
3929 4257 6.566197 CTCCTACAGCACATCTTTCTTTTT 57.434 37.500 0.00 0.00 0.00 1.94
3930 4258 7.672983 CTCCTACAGCACATCTTTCTTTTTA 57.327 36.000 0.00 0.00 0.00 1.52
3931 4259 8.273780 CTCCTACAGCACATCTTTCTTTTTAT 57.726 34.615 0.00 0.00 0.00 1.40
3932 4260 8.635765 TCCTACAGCACATCTTTCTTTTTATT 57.364 30.769 0.00 0.00 0.00 1.40
3933 4261 8.514594 TCCTACAGCACATCTTTCTTTTTATTG 58.485 33.333 0.00 0.00 0.00 1.90
3934 4262 8.514594 CCTACAGCACATCTTTCTTTTTATTGA 58.485 33.333 0.00 0.00 0.00 2.57
3935 4263 9.897744 CTACAGCACATCTTTCTTTTTATTGAA 57.102 29.630 0.00 0.00 0.00 2.69
3936 4264 8.579682 ACAGCACATCTTTCTTTTTATTGAAC 57.420 30.769 0.00 0.00 0.00 3.18
3937 4265 8.416329 ACAGCACATCTTTCTTTTTATTGAACT 58.584 29.630 0.00 0.00 0.00 3.01
3938 4266 9.897744 CAGCACATCTTTCTTTTTATTGAACTA 57.102 29.630 0.00 0.00 0.00 2.24
3973 4301 7.531857 TTTTTATGGATAGCTGGACAAAACA 57.468 32.000 0.00 0.00 0.00 2.83
3974 4302 6.509418 TTTATGGATAGCTGGACAAAACAC 57.491 37.500 0.00 0.00 0.00 3.32
3975 4303 2.790433 TGGATAGCTGGACAAAACACC 58.210 47.619 0.00 0.00 0.00 4.16
3976 4304 2.107378 TGGATAGCTGGACAAAACACCA 59.893 45.455 0.00 0.00 34.81 4.17
3977 4305 2.488153 GGATAGCTGGACAAAACACCAC 59.512 50.000 0.00 0.00 32.44 4.16
3978 4306 2.719531 TAGCTGGACAAAACACCACA 57.280 45.000 0.00 0.00 32.44 4.17
3979 4307 1.846007 AGCTGGACAAAACACCACAA 58.154 45.000 0.00 0.00 32.44 3.33
3980 4308 2.175202 AGCTGGACAAAACACCACAAA 58.825 42.857 0.00 0.00 32.44 2.83
3981 4309 2.765699 AGCTGGACAAAACACCACAAAT 59.234 40.909 0.00 0.00 32.44 2.32
3982 4310 3.197549 AGCTGGACAAAACACCACAAATT 59.802 39.130 0.00 0.00 32.44 1.82
3983 4311 3.309410 GCTGGACAAAACACCACAAATTG 59.691 43.478 0.00 0.00 32.44 2.32
3984 4312 4.753233 CTGGACAAAACACCACAAATTGA 58.247 39.130 0.00 0.00 32.44 2.57
3985 4313 5.152623 TGGACAAAACACCACAAATTGAA 57.847 34.783 0.00 0.00 0.00 2.69
3986 4314 5.738909 TGGACAAAACACCACAAATTGAAT 58.261 33.333 0.00 0.00 0.00 2.57
3987 4315 6.176183 TGGACAAAACACCACAAATTGAATT 58.824 32.000 0.00 0.00 0.00 2.17
3988 4316 6.656693 TGGACAAAACACCACAAATTGAATTT 59.343 30.769 0.00 0.00 0.00 1.82
3989 4317 7.175641 TGGACAAAACACCACAAATTGAATTTT 59.824 29.630 0.00 0.00 0.00 1.82
3990 4318 8.026026 GGACAAAACACCACAAATTGAATTTTT 58.974 29.630 0.00 0.00 0.00 1.94
4007 4335 3.963383 TTTTTCCTGCTTCTTCACGTC 57.037 42.857 0.00 0.00 0.00 4.34
4008 4336 1.878953 TTTCCTGCTTCTTCACGTCC 58.121 50.000 0.00 0.00 0.00 4.79
4009 4337 0.756294 TTCCTGCTTCTTCACGTCCA 59.244 50.000 0.00 0.00 0.00 4.02
4010 4338 0.756294 TCCTGCTTCTTCACGTCCAA 59.244 50.000 0.00 0.00 0.00 3.53
4011 4339 1.151668 CCTGCTTCTTCACGTCCAAG 58.848 55.000 0.00 0.00 0.00 3.61
4012 4340 0.514691 CTGCTTCTTCACGTCCAAGC 59.485 55.000 9.35 9.35 41.43 4.01
4013 4341 0.884704 TGCTTCTTCACGTCCAAGCC 60.885 55.000 12.38 0.86 40.53 4.35
4014 4342 1.578206 GCTTCTTCACGTCCAAGCCC 61.578 60.000 6.16 0.00 36.11 5.19
4015 4343 0.250295 CTTCTTCACGTCCAAGCCCA 60.250 55.000 0.00 0.00 0.00 5.36
4016 4344 0.534203 TTCTTCACGTCCAAGCCCAC 60.534 55.000 0.00 0.00 0.00 4.61
4017 4345 1.227823 CTTCACGTCCAAGCCCACA 60.228 57.895 0.00 0.00 0.00 4.17
4018 4346 1.507141 CTTCACGTCCAAGCCCACAC 61.507 60.000 0.00 0.00 0.00 3.82
4019 4347 2.203139 CACGTCCAAGCCCACACA 60.203 61.111 0.00 0.00 0.00 3.72
4020 4348 1.600636 CACGTCCAAGCCCACACAT 60.601 57.895 0.00 0.00 0.00 3.21
4021 4349 1.302511 ACGTCCAAGCCCACACATC 60.303 57.895 0.00 0.00 0.00 3.06
4022 4350 1.302431 CGTCCAAGCCCACACATCA 60.302 57.895 0.00 0.00 0.00 3.07
4023 4351 0.677731 CGTCCAAGCCCACACATCAT 60.678 55.000 0.00 0.00 0.00 2.45
4024 4352 1.406751 CGTCCAAGCCCACACATCATA 60.407 52.381 0.00 0.00 0.00 2.15
4025 4353 2.017049 GTCCAAGCCCACACATCATAC 58.983 52.381 0.00 0.00 0.00 2.39
4026 4354 1.915489 TCCAAGCCCACACATCATACT 59.085 47.619 0.00 0.00 0.00 2.12
4027 4355 2.308570 TCCAAGCCCACACATCATACTT 59.691 45.455 0.00 0.00 0.00 2.24
4028 4356 3.091545 CCAAGCCCACACATCATACTTT 58.908 45.455 0.00 0.00 0.00 2.66
4029 4357 3.511146 CCAAGCCCACACATCATACTTTT 59.489 43.478 0.00 0.00 0.00 2.27
4030 4358 4.021192 CCAAGCCCACACATCATACTTTTT 60.021 41.667 0.00 0.00 0.00 1.94
4031 4359 5.184864 CCAAGCCCACACATCATACTTTTTA 59.815 40.000 0.00 0.00 0.00 1.52
4032 4360 6.324819 CAAGCCCACACATCATACTTTTTAG 58.675 40.000 0.00 0.00 0.00 1.85
4033 4361 4.949856 AGCCCACACATCATACTTTTTAGG 59.050 41.667 0.00 0.00 0.00 2.69
4034 4362 4.947388 GCCCACACATCATACTTTTTAGGA 59.053 41.667 0.00 0.00 0.00 2.94
4035 4363 5.163652 GCCCACACATCATACTTTTTAGGAC 60.164 44.000 0.00 0.00 0.00 3.85
4036 4364 5.064707 CCCACACATCATACTTTTTAGGACG 59.935 44.000 0.00 0.00 0.00 4.79
4037 4365 5.064707 CCACACATCATACTTTTTAGGACGG 59.935 44.000 0.00 0.00 0.00 4.79
4038 4366 5.872617 CACACATCATACTTTTTAGGACGGA 59.127 40.000 0.00 0.00 0.00 4.69
4039 4367 6.538742 CACACATCATACTTTTTAGGACGGAT 59.461 38.462 0.00 0.00 0.00 4.18
4040 4368 7.065803 CACACATCATACTTTTTAGGACGGATT 59.934 37.037 0.00 0.00 0.00 3.01
4041 4369 7.610305 ACACATCATACTTTTTAGGACGGATTT 59.390 33.333 0.00 0.00 0.00 2.17
4042 4370 7.910162 CACATCATACTTTTTAGGACGGATTTG 59.090 37.037 0.00 0.00 0.00 2.32
4043 4371 6.431198 TCATACTTTTTAGGACGGATTTGC 57.569 37.500 0.00 0.00 0.00 3.68
4044 4372 5.355910 TCATACTTTTTAGGACGGATTTGCC 59.644 40.000 0.00 0.00 0.00 4.52
4045 4373 2.823747 ACTTTTTAGGACGGATTTGCCC 59.176 45.455 0.00 0.00 0.00 5.36
4046 4374 2.891191 TTTTAGGACGGATTTGCCCT 57.109 45.000 0.00 0.00 0.00 5.19
4047 4375 2.413310 TTTAGGACGGATTTGCCCTC 57.587 50.000 0.00 0.00 0.00 4.30
4048 4376 1.580059 TTAGGACGGATTTGCCCTCT 58.420 50.000 0.00 0.00 0.00 3.69
4049 4377 0.830648 TAGGACGGATTTGCCCTCTG 59.169 55.000 0.00 0.00 0.00 3.35
4050 4378 1.452108 GGACGGATTTGCCCTCTGG 60.452 63.158 0.00 0.00 0.00 3.86
4051 4379 1.299976 GACGGATTTGCCCTCTGGT 59.700 57.895 0.00 0.00 0.00 4.00
4052 4380 0.322546 GACGGATTTGCCCTCTGGTT 60.323 55.000 0.00 0.00 0.00 3.67
4053 4381 0.322546 ACGGATTTGCCCTCTGGTTC 60.323 55.000 0.00 0.00 0.00 3.62
4054 4382 1.369091 CGGATTTGCCCTCTGGTTCG 61.369 60.000 0.00 0.00 0.00 3.95
4055 4383 0.322546 GGATTTGCCCTCTGGTTCGT 60.323 55.000 0.00 0.00 0.00 3.85
4056 4384 1.534729 GATTTGCCCTCTGGTTCGTT 58.465 50.000 0.00 0.00 0.00 3.85
4057 4385 1.886542 GATTTGCCCTCTGGTTCGTTT 59.113 47.619 0.00 0.00 0.00 3.60
4058 4386 1.314730 TTTGCCCTCTGGTTCGTTTC 58.685 50.000 0.00 0.00 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 84 5.535333 CACTTCATGTTCAAGGCTCAATTT 58.465 37.500 0.00 0.00 0.00 1.82
99 111 6.088616 GCACATTTCAAGAAACAGATAAGCAC 59.911 38.462 0.00 0.00 32.51 4.40
109 121 5.632347 CCAGAATCTGCACATTTCAAGAAAC 59.368 40.000 4.40 0.00 32.51 2.78
201 213 1.873591 GTAGTTGTGGCTGGAACACTG 59.126 52.381 0.00 0.00 39.52 3.66
309 321 2.092429 AGGTGGAAAGACAAGACAGCAA 60.092 45.455 0.00 0.00 32.43 3.91
366 378 4.790790 AGGTTCTTCCTGTAATCCCATCTT 59.209 41.667 0.00 0.00 46.19 2.40
380 392 2.238521 TGCATTGGTTGAGGTTCTTCC 58.761 47.619 0.00 0.00 0.00 3.46
382 394 6.610075 ATTTATGCATTGGTTGAGGTTCTT 57.390 33.333 3.54 0.00 0.00 2.52
383 395 7.716799 TTATTTATGCATTGGTTGAGGTTCT 57.283 32.000 3.54 0.00 0.00 3.01
384 396 7.653311 GGATTATTTATGCATTGGTTGAGGTTC 59.347 37.037 3.54 0.00 0.00 3.62
385 397 7.125507 TGGATTATTTATGCATTGGTTGAGGTT 59.874 33.333 3.54 0.00 28.55 3.50
386 398 6.610830 TGGATTATTTATGCATTGGTTGAGGT 59.389 34.615 3.54 0.00 28.55 3.85
387 399 7.014518 TCTGGATTATTTATGCATTGGTTGAGG 59.985 37.037 3.54 0.00 33.79 3.86
388 400 7.944061 TCTGGATTATTTATGCATTGGTTGAG 58.056 34.615 3.54 0.00 33.79 3.02
389 401 7.894753 TCTGGATTATTTATGCATTGGTTGA 57.105 32.000 3.54 0.00 33.79 3.18
390 402 7.117236 GCATCTGGATTATTTATGCATTGGTTG 59.883 37.037 3.54 0.00 41.94 3.77
422 438 3.915437 AATTTCCTGTAACTTGGTGCG 57.085 42.857 0.00 0.00 0.00 5.34
423 439 5.699839 CAGTAATTTCCTGTAACTTGGTGC 58.300 41.667 0.00 0.00 0.00 5.01
434 450 7.766278 AGACACTAGTTATGCAGTAATTTCCTG 59.234 37.037 0.00 1.49 0.00 3.86
442 458 8.188799 GTGTATGAAGACACTAGTTATGCAGTA 58.811 37.037 0.00 0.00 45.21 2.74
456 480 6.764379 TGTATTGTTCTGGTGTATGAAGACA 58.236 36.000 0.00 0.00 0.00 3.41
474 498 5.160641 CCGTCCCTCAAAATGTTTGTATTG 58.839 41.667 0.98 0.00 0.00 1.90
475 499 4.830600 ACCGTCCCTCAAAATGTTTGTATT 59.169 37.500 0.98 0.00 0.00 1.89
513 538 9.647797 CAATACGAGATCTACTCTACTCTACAT 57.352 37.037 0.00 0.00 42.92 2.29
520 545 6.306837 GCATTGCAATACGAGATCTACTCTAC 59.693 42.308 12.53 0.00 42.92 2.59
557 582 4.122046 ACCAACCGAAAACACAGTACTAC 58.878 43.478 0.00 0.00 0.00 2.73
558 583 4.405116 ACCAACCGAAAACACAGTACTA 57.595 40.909 0.00 0.00 0.00 1.82
559 584 3.271055 ACCAACCGAAAACACAGTACT 57.729 42.857 0.00 0.00 0.00 2.73
629 654 2.803492 GCCATGACCATAGAGGACGAAC 60.803 54.545 0.00 0.00 41.22 3.95
632 657 0.034059 GGCCATGACCATAGAGGACG 59.966 60.000 0.00 0.00 41.22 4.79
640 665 0.466189 GTCCAATCGGCCATGACCAT 60.466 55.000 2.24 0.00 0.00 3.55
641 666 1.077787 GTCCAATCGGCCATGACCA 60.078 57.895 2.24 0.00 0.00 4.02
642 667 1.077787 TGTCCAATCGGCCATGACC 60.078 57.895 2.24 0.00 0.00 4.02
644 669 0.107703 GAGTGTCCAATCGGCCATGA 60.108 55.000 2.24 0.00 0.00 3.07
649 676 1.079503 GTTGAGAGTGTCCAATCGGC 58.920 55.000 0.00 0.00 0.00 5.54
658 685 2.370189 AGGCTGCTTAAGTTGAGAGTGT 59.630 45.455 4.02 0.00 0.00 3.55
660 687 3.055747 GGTAGGCTGCTTAAGTTGAGAGT 60.056 47.826 4.02 0.00 0.00 3.24
670 697 0.546747 AGGGTGTGGTAGGCTGCTTA 60.547 55.000 1.79 0.00 0.00 3.09
679 706 3.799432 AATGCAAAGTAGGGTGTGGTA 57.201 42.857 0.00 0.00 0.00 3.25
681 708 4.279671 TGTTTAATGCAAAGTAGGGTGTGG 59.720 41.667 0.00 0.00 0.00 4.17
683 710 4.022329 GCTGTTTAATGCAAAGTAGGGTGT 60.022 41.667 0.00 0.00 0.00 4.16
684 711 4.022416 TGCTGTTTAATGCAAAGTAGGGTG 60.022 41.667 0.00 0.00 36.15 4.61
686 713 4.782019 TGCTGTTTAATGCAAAGTAGGG 57.218 40.909 0.00 0.00 36.15 3.53
694 721 4.280425 TGAACCTGATTGCTGTTTAATGCA 59.720 37.500 0.00 0.00 37.42 3.96
695 722 4.808558 TGAACCTGATTGCTGTTTAATGC 58.191 39.130 0.00 0.00 0.00 3.56
696 723 5.404946 CCTGAACCTGATTGCTGTTTAATG 58.595 41.667 0.00 0.00 0.00 1.90
697 724 4.082026 GCCTGAACCTGATTGCTGTTTAAT 60.082 41.667 0.00 0.00 0.00 1.40
699 726 2.819608 GCCTGAACCTGATTGCTGTTTA 59.180 45.455 0.00 0.00 0.00 2.01
710 738 2.360852 CCTGCCTGCCTGAACCTG 60.361 66.667 0.00 0.00 0.00 4.00
742 770 5.457799 CAGTGTCAATTGCAGTGAGAAAAAG 59.542 40.000 22.63 3.80 39.05 2.27
743 771 5.125257 TCAGTGTCAATTGCAGTGAGAAAAA 59.875 36.000 24.30 10.82 40.24 1.94
784 812 1.207089 TGCAAAGCGGCAGATACTAGT 59.793 47.619 1.45 0.00 39.25 2.57
785 813 1.939974 TGCAAAGCGGCAGATACTAG 58.060 50.000 1.45 0.00 39.25 2.57
932 966 2.133742 ATTGCTGTGTTGCGACCTGC 62.134 55.000 0.45 9.15 46.70 4.85
1090 1136 0.895100 TCCTTGATGGGTGTTGCTGC 60.895 55.000 0.00 0.00 36.20 5.25
1091 1137 1.542915 CTTCCTTGATGGGTGTTGCTG 59.457 52.381 0.00 0.00 36.20 4.41
1092 1138 1.915141 CTTCCTTGATGGGTGTTGCT 58.085 50.000 0.00 0.00 36.20 3.91
1093 1139 0.244721 GCTTCCTTGATGGGTGTTGC 59.755 55.000 0.00 0.00 36.20 4.17
1094 1140 1.815003 GAGCTTCCTTGATGGGTGTTG 59.185 52.381 0.00 0.00 36.20 3.33
1095 1141 1.272147 GGAGCTTCCTTGATGGGTGTT 60.272 52.381 0.00 0.00 36.20 3.32
1096 1142 0.329596 GGAGCTTCCTTGATGGGTGT 59.670 55.000 0.00 0.00 36.20 4.16
1097 1143 0.622665 AGGAGCTTCCTTGATGGGTG 59.377 55.000 0.00 0.00 46.91 4.61
1098 1144 3.111265 AGGAGCTTCCTTGATGGGT 57.889 52.632 0.00 0.00 46.91 4.51
1158 1204 1.073897 GCTCACCCTCACAAGCCTT 59.926 57.895 0.00 0.00 0.00 4.35
1329 1375 1.285950 CGTCAGGTCGCTCTTGTCA 59.714 57.895 0.00 0.00 0.00 3.58
1383 1429 0.689055 TGTCATGCTGCTCCTGAAGT 59.311 50.000 0.00 0.00 0.00 3.01
1405 1451 3.521531 TGACATGGAGCCCAACTTACATA 59.478 43.478 0.00 0.00 36.95 2.29
1418 1464 0.979665 AGGTCTGTGGTGACATGGAG 59.020 55.000 0.00 0.00 46.14 3.86
1441 1487 0.870393 AAGCAACTGCACAGTGATCG 59.130 50.000 4.15 0.00 45.16 3.69
1499 1546 3.308473 GGTTGCAGGTAAAGGGAGAGATT 60.308 47.826 0.00 0.00 0.00 2.40
1529 1576 4.964897 AGTCATGGACATCTCATGGTAGAA 59.035 41.667 0.00 0.00 41.51 2.10
1535 1582 3.832615 TGGAGTCATGGACATCTCATG 57.167 47.619 0.00 0.00 42.28 3.07
1536 1583 4.353383 CATGGAGTCATGGACATCTCAT 57.647 45.455 0.00 0.00 45.19 2.90
1537 1584 3.832615 CATGGAGTCATGGACATCTCA 57.167 47.619 0.00 0.00 45.19 3.27
1547 1594 5.182570 CAGTTGTGAATGAACATGGAGTCAT 59.817 40.000 0.00 0.11 0.00 3.06
1548 1595 4.516321 CAGTTGTGAATGAACATGGAGTCA 59.484 41.667 0.00 0.00 0.00 3.41
1549 1596 4.516698 ACAGTTGTGAATGAACATGGAGTC 59.483 41.667 0.00 0.00 0.00 3.36
1550 1597 4.464008 ACAGTTGTGAATGAACATGGAGT 58.536 39.130 0.00 0.00 0.00 3.85
1551 1598 5.389830 CGTACAGTTGTGAATGAACATGGAG 60.390 44.000 0.00 0.00 0.00 3.86
1584 1631 1.604604 TTTGCTGTCTGTTAGCCACC 58.395 50.000 0.00 0.00 40.42 4.61
1654 1701 3.290948 TGGCACTGTCTTTTAGGTTGT 57.709 42.857 0.00 0.00 0.00 3.32
1940 1993 2.639065 GAGGGTCGTTTCATGGCAATA 58.361 47.619 0.00 0.00 0.00 1.90
1941 1994 1.463674 GAGGGTCGTTTCATGGCAAT 58.536 50.000 0.00 0.00 0.00 3.56
2000 2054 6.813649 TCCGTCTTGATCTGAACAAAAGATAG 59.186 38.462 1.97 0.00 34.50 2.08
2010 2068 2.752903 TCGACATCCGTCTTGATCTGAA 59.247 45.455 0.00 0.00 40.23 3.02
2168 2226 8.311109 AGAAAACGGCAATTGGAACTAAATATT 58.689 29.630 7.72 0.00 0.00 1.28
2175 2233 3.254903 GGTAGAAAACGGCAATTGGAACT 59.745 43.478 7.72 0.00 0.00 3.01
2182 2240 4.010667 TGTACTGGTAGAAAACGGCAAT 57.989 40.909 0.00 0.00 0.00 3.56
2193 2251 3.323979 AGGTGTTGTCCTTGTACTGGTAG 59.676 47.826 0.00 0.00 33.52 3.18
2201 2259 1.149101 ATCCCAGGTGTTGTCCTTGT 58.851 50.000 0.00 0.00 35.37 3.16
2209 2267 0.178964 CACCAACCATCCCAGGTGTT 60.179 55.000 0.00 0.00 44.95 3.32
2210 2268 1.460255 CACCAACCATCCCAGGTGT 59.540 57.895 0.00 0.00 44.95 4.16
2213 2271 1.304282 CCTCACCAACCATCCCAGG 59.696 63.158 0.00 0.00 0.00 4.45
2240 2298 7.930865 TGAATTTTACAGCAGCTTAATTTGGTT 59.069 29.630 0.00 0.00 0.00 3.67
2242 2300 7.599998 ACTGAATTTTACAGCAGCTTAATTTGG 59.400 33.333 0.00 0.00 38.74 3.28
2246 2305 6.403636 CCGACTGAATTTTACAGCAGCTTAAT 60.404 38.462 0.00 0.00 38.74 1.40
2250 2309 2.744202 CCGACTGAATTTTACAGCAGCT 59.256 45.455 0.00 0.00 38.74 4.24
2251 2310 2.742053 TCCGACTGAATTTTACAGCAGC 59.258 45.455 0.00 0.00 38.74 5.25
2252 2311 4.631377 TCATCCGACTGAATTTTACAGCAG 59.369 41.667 0.00 0.00 38.74 4.24
2270 2329 1.234821 TCAACACGCCTGTTTCATCC 58.765 50.000 0.00 0.00 38.66 3.51
2276 2335 0.748005 AGTGCTTCAACACGCCTGTT 60.748 50.000 0.00 0.00 45.45 3.16
2318 2377 2.268920 GCTTCCCGGAGTGCATCA 59.731 61.111 0.73 0.00 0.00 3.07
2512 2571 6.249951 ACCTGGCAAACAATTAAGTACCATA 58.750 36.000 0.00 0.00 0.00 2.74
2513 2572 5.083821 ACCTGGCAAACAATTAAGTACCAT 58.916 37.500 0.00 0.00 0.00 3.55
2515 2574 5.227152 CAACCTGGCAAACAATTAAGTACC 58.773 41.667 0.00 0.00 0.00 3.34
2613 2675 3.053470 TCCCTGAATCAAGCATCCATTCA 60.053 43.478 0.00 0.00 35.66 2.57
2695 2843 6.442952 TGTTTGGTGCAAATATCAAGTACAC 58.557 36.000 0.00 0.00 35.74 2.90
2700 2848 6.258230 TCTCTGTTTGGTGCAAATATCAAG 57.742 37.500 0.00 0.00 35.74 3.02
2713 2861 3.365969 GCAACCGGTTAATCTCTGTTTGG 60.366 47.826 21.79 3.65 0.00 3.28
2735 2883 7.005380 GCAAATTCAAACAGATGAACAATTCG 58.995 34.615 0.00 0.00 41.78 3.34
2995 3144 2.691522 CGCATCGCTTCACTGTCG 59.308 61.111 0.00 0.00 0.00 4.35
3085 3239 8.951954 ATATATCGTCAATAGTTTCGTCTCAC 57.048 34.615 0.00 0.00 0.00 3.51
3112 3266 9.587772 GACATTAATTTGTACTCTGAGAAGCTA 57.412 33.333 12.44 0.00 0.00 3.32
3113 3267 8.097038 TGACATTAATTTGTACTCTGAGAAGCT 58.903 33.333 12.44 0.00 0.00 3.74
3140 3294 3.863424 AGACTACATGCATACGAAAACCG 59.137 43.478 0.00 0.00 45.44 4.44
3143 3297 7.993101 ACTAGTAGACTACATGCATACGAAAA 58.007 34.615 14.95 0.00 0.00 2.29
3147 3301 7.802251 GGTAAACTAGTAGACTACATGCATACG 59.198 40.741 14.95 0.00 0.00 3.06
3203 3361 1.406447 GTGCCGCGTAGAATAGTAGC 58.594 55.000 4.92 0.00 0.00 3.58
3204 3362 1.335689 GGGTGCCGCGTAGAATAGTAG 60.336 57.143 4.92 0.00 0.00 2.57
3205 3363 0.670162 GGGTGCCGCGTAGAATAGTA 59.330 55.000 4.92 0.00 0.00 1.82
3223 3381 1.675641 CCTTGTTCCCAAGCTCGGG 60.676 63.158 2.09 2.09 45.57 5.14
3228 3386 0.039618 TCCATCCCTTGTTCCCAAGC 59.960 55.000 0.00 0.00 45.57 4.01
3236 3394 4.271807 TCTATGTCTCTCCATCCCTTGT 57.728 45.455 0.00 0.00 0.00 3.16
3243 3401 9.995003 GAACTGAAATAATCTATGTCTCTCCAT 57.005 33.333 0.00 0.00 0.00 3.41
3244 3402 9.206690 AGAACTGAAATAATCTATGTCTCTCCA 57.793 33.333 0.00 0.00 0.00 3.86
3282 3440 9.485206 GTGTCTACCTTTTTCAAGTATACTTCA 57.515 33.333 15.35 0.00 33.11 3.02
3283 3441 9.485206 TGTGTCTACCTTTTTCAAGTATACTTC 57.515 33.333 15.35 0.72 33.11 3.01
3284 3442 9.841295 TTGTGTCTACCTTTTTCAAGTATACTT 57.159 29.630 12.50 12.50 36.45 2.24
3285 3443 9.841295 TTTGTGTCTACCTTTTTCAAGTATACT 57.159 29.630 0.00 0.00 0.00 2.12
3286 3444 9.874215 GTTTGTGTCTACCTTTTTCAAGTATAC 57.126 33.333 0.00 0.00 0.00 1.47
3296 3456 7.883229 CACAAAAAGTTTGTGTCTACCTTTT 57.117 32.000 20.56 2.42 43.40 2.27
3340 3583 8.729756 TCCTCAATGTGTTACAACATATTCTTG 58.270 33.333 12.46 5.94 44.13 3.02
3342 3585 9.113838 GATCCTCAATGTGTTACAACATATTCT 57.886 33.333 12.46 0.00 44.13 2.40
3345 3588 8.806429 TTGATCCTCAATGTGTTACAACATAT 57.194 30.769 0.00 0.00 41.64 1.78
3346 3589 8.628630 TTTGATCCTCAATGTGTTACAACATA 57.371 30.769 0.00 0.00 39.89 2.29
3347 3590 7.523293 TTTGATCCTCAATGTGTTACAACAT 57.477 32.000 0.00 0.00 42.62 2.71
3348 3591 6.951062 TTTGATCCTCAATGTGTTACAACA 57.049 33.333 0.00 0.00 36.11 3.33
3358 3609 6.683974 ACGTCCTTAATTTGATCCTCAATG 57.316 37.500 0.00 0.00 36.11 2.82
3359 3610 8.210946 TCATACGTCCTTAATTTGATCCTCAAT 58.789 33.333 0.00 0.00 36.11 2.57
3379 3630 7.534085 TCTAACTTGCCATAAACTTCATACG 57.466 36.000 0.00 0.00 0.00 3.06
3399 3650 3.734463 TGTCGACTTTGTGCCAATCTAA 58.266 40.909 17.92 0.00 0.00 2.10
3420 3671 4.402793 ACACTTACGGATGCTTGATCTACT 59.597 41.667 0.00 0.00 0.00 2.57
3423 3674 3.895232 ACACTTACGGATGCTTGATCT 57.105 42.857 0.00 0.00 0.00 2.75
3429 3680 3.674997 ACATCAAACACTTACGGATGCT 58.325 40.909 0.00 0.00 39.08 3.79
3431 3682 5.621422 CAGAACATCAAACACTTACGGATG 58.379 41.667 0.00 0.00 40.78 3.51
3432 3683 4.154195 GCAGAACATCAAACACTTACGGAT 59.846 41.667 0.00 0.00 0.00 4.18
3435 3686 3.664276 CGGCAGAACATCAAACACTTACG 60.664 47.826 0.00 0.00 0.00 3.18
3436 3687 3.810373 CGGCAGAACATCAAACACTTAC 58.190 45.455 0.00 0.00 0.00 2.34
3437 3688 2.225491 GCGGCAGAACATCAAACACTTA 59.775 45.455 0.00 0.00 0.00 2.24
3473 3736 2.480419 AGCGAGTCCAAACGAAATTGAG 59.520 45.455 0.00 0.00 31.84 3.02
3477 3757 3.982576 AAAAGCGAGTCCAAACGAAAT 57.017 38.095 0.00 0.00 0.00 2.17
3508 3788 9.161629 CCTTAAATCCTTTTGACTTGTTTTTGT 57.838 29.630 0.00 0.00 0.00 2.83
3512 3792 7.432148 ACCCTTAAATCCTTTTGACTTGTTT 57.568 32.000 0.00 0.00 0.00 2.83
3515 3795 7.014808 TGGTAACCCTTAAATCCTTTTGACTTG 59.985 37.037 0.00 0.00 0.00 3.16
3516 3796 7.070629 TGGTAACCCTTAAATCCTTTTGACTT 58.929 34.615 0.00 0.00 0.00 3.01
3517 3797 6.616577 TGGTAACCCTTAAATCCTTTTGACT 58.383 36.000 0.00 0.00 0.00 3.41
3518 3798 6.904463 TGGTAACCCTTAAATCCTTTTGAC 57.096 37.500 0.00 0.00 0.00 3.18
3519 3799 7.730784 TGAATGGTAACCCTTAAATCCTTTTGA 59.269 33.333 0.00 0.00 0.00 2.69
3520 3800 7.902087 TGAATGGTAACCCTTAAATCCTTTTG 58.098 34.615 0.00 0.00 0.00 2.44
3521 3801 8.499288 TTGAATGGTAACCCTTAAATCCTTTT 57.501 30.769 0.00 0.00 0.00 2.27
3567 3850 3.735746 AGCAGCGTCAAATTTTAGTTTGC 59.264 39.130 0.00 0.00 38.61 3.68
3594 3877 3.713650 AGGTGACAGTGCGCCTAT 58.286 55.556 15.31 0.00 46.47 2.57
3606 3890 3.329231 CGCAACGCAAGAAGGTGA 58.671 55.556 0.00 0.00 43.62 4.02
3644 3928 0.328258 AGGGCTGTGTATTGGTGGAC 59.672 55.000 0.00 0.00 0.00 4.02
3653 3937 1.379977 CGAGGAGGAGGGCTGTGTA 60.380 63.158 0.00 0.00 0.00 2.90
3727 4055 2.036256 AGATTGGTGCCACTGCCC 59.964 61.111 0.00 0.00 36.33 5.36
3759 4087 2.158158 TGAGAAGGGTGAGGAAGGAAGA 60.158 50.000 0.00 0.00 0.00 2.87
3806 4134 0.165079 AAAATACAGCACGAACGCCG 59.835 50.000 0.00 0.00 45.44 6.46
3807 4135 2.325509 AAAAATACAGCACGAACGCC 57.674 45.000 0.00 0.00 0.00 5.68
3825 4153 3.246699 CGAACGCTGTTCTCAGGTAAAAA 59.753 43.478 15.82 0.00 41.57 1.94
3826 4154 2.798283 CGAACGCTGTTCTCAGGTAAAA 59.202 45.455 15.82 0.00 41.57 1.52
3827 4155 2.223876 ACGAACGCTGTTCTCAGGTAAA 60.224 45.455 15.82 0.00 41.57 2.01
3828 4156 1.338973 ACGAACGCTGTTCTCAGGTAA 59.661 47.619 15.82 0.00 41.57 2.85
3829 4157 0.956633 ACGAACGCTGTTCTCAGGTA 59.043 50.000 15.82 0.00 41.57 3.08
3830 4158 0.956633 TACGAACGCTGTTCTCAGGT 59.043 50.000 15.82 10.40 41.57 4.00
3831 4159 1.068472 AGTACGAACGCTGTTCTCAGG 60.068 52.381 15.82 6.31 41.57 3.86
3832 4160 2.095668 AGAGTACGAACGCTGTTCTCAG 60.096 50.000 15.82 6.58 43.87 3.35
3833 4161 1.878088 AGAGTACGAACGCTGTTCTCA 59.122 47.619 15.82 4.63 36.54 3.27
3834 4162 2.615489 AGAGTACGAACGCTGTTCTC 57.385 50.000 15.82 8.95 34.12 2.87
3835 4163 2.419324 CCTAGAGTACGAACGCTGTTCT 59.581 50.000 15.82 8.33 36.34 3.01
3836 4164 2.161211 ACCTAGAGTACGAACGCTGTTC 59.839 50.000 10.23 10.23 36.34 3.18
3837 4165 2.157738 ACCTAGAGTACGAACGCTGTT 58.842 47.619 0.00 0.00 36.34 3.16
3838 4166 1.818642 ACCTAGAGTACGAACGCTGT 58.181 50.000 0.00 0.00 36.34 4.40
3839 4167 3.373439 AGTTACCTAGAGTACGAACGCTG 59.627 47.826 0.00 0.00 36.34 5.18
3840 4168 3.604582 AGTTACCTAGAGTACGAACGCT 58.395 45.455 0.00 0.00 39.31 5.07
3841 4169 4.348198 AAGTTACCTAGAGTACGAACGC 57.652 45.455 0.00 0.00 0.00 4.84
3863 4191 3.004315 GGCATTTCCTCGACACAGAAAAA 59.996 43.478 0.00 0.00 33.53 1.94
3864 4192 2.552315 GGCATTTCCTCGACACAGAAAA 59.448 45.455 0.00 0.00 33.53 2.29
3865 4193 2.151202 GGCATTTCCTCGACACAGAAA 58.849 47.619 0.00 0.00 34.26 2.52
3866 4194 1.071542 TGGCATTTCCTCGACACAGAA 59.928 47.619 0.00 0.00 35.26 3.02
3867 4195 0.684535 TGGCATTTCCTCGACACAGA 59.315 50.000 0.00 0.00 35.26 3.41
3868 4196 0.798776 GTGGCATTTCCTCGACACAG 59.201 55.000 0.00 0.00 35.26 3.66
3869 4197 0.107643 TGTGGCATTTCCTCGACACA 59.892 50.000 0.00 0.00 36.59 3.72
3870 4198 1.453155 ATGTGGCATTTCCTCGACAC 58.547 50.000 0.00 0.00 35.26 3.67
3871 4199 2.198827 AATGTGGCATTTCCTCGACA 57.801 45.000 0.00 0.00 35.26 4.35
3872 4200 3.575965 AAAATGTGGCATTTCCTCGAC 57.424 42.857 7.44 0.00 35.26 4.20
3890 4218 3.208747 AGGAGCAAAGTCCGAGAAAAA 57.791 42.857 0.00 0.00 42.05 1.94
3891 4219 2.930826 AGGAGCAAAGTCCGAGAAAA 57.069 45.000 0.00 0.00 42.05 2.29
3892 4220 2.631062 TGTAGGAGCAAAGTCCGAGAAA 59.369 45.455 0.00 0.00 42.05 2.52
3893 4221 2.231478 CTGTAGGAGCAAAGTCCGAGAA 59.769 50.000 0.00 0.00 42.05 2.87
3894 4222 1.819288 CTGTAGGAGCAAAGTCCGAGA 59.181 52.381 0.00 0.00 42.05 4.04
3895 4223 2.285827 CTGTAGGAGCAAAGTCCGAG 57.714 55.000 0.00 0.00 42.05 4.63
3906 4234 6.566197 AAAAAGAAAGATGTGCTGTAGGAG 57.434 37.500 0.00 0.00 0.00 3.69
3907 4235 8.514594 CAATAAAAAGAAAGATGTGCTGTAGGA 58.485 33.333 0.00 0.00 0.00 2.94
3908 4236 8.514594 TCAATAAAAAGAAAGATGTGCTGTAGG 58.485 33.333 0.00 0.00 0.00 3.18
3909 4237 9.897744 TTCAATAAAAAGAAAGATGTGCTGTAG 57.102 29.630 0.00 0.00 0.00 2.74
3910 4238 9.677567 GTTCAATAAAAAGAAAGATGTGCTGTA 57.322 29.630 0.00 0.00 0.00 2.74
3911 4239 8.416329 AGTTCAATAAAAAGAAAGATGTGCTGT 58.584 29.630 0.00 0.00 0.00 4.40
3912 4240 8.807667 AGTTCAATAAAAAGAAAGATGTGCTG 57.192 30.769 0.00 0.00 0.00 4.41
3949 4277 7.375053 GTGTTTTGTCCAGCTATCCATAAAAA 58.625 34.615 0.00 0.00 0.00 1.94
3950 4278 6.071616 GGTGTTTTGTCCAGCTATCCATAAAA 60.072 38.462 0.00 0.00 0.00 1.52
3951 4279 5.417580 GGTGTTTTGTCCAGCTATCCATAAA 59.582 40.000 0.00 0.00 0.00 1.40
3952 4280 4.947388 GGTGTTTTGTCCAGCTATCCATAA 59.053 41.667 0.00 0.00 0.00 1.90
3953 4281 4.018870 TGGTGTTTTGTCCAGCTATCCATA 60.019 41.667 0.00 0.00 0.00 2.74
3954 4282 3.245229 TGGTGTTTTGTCCAGCTATCCAT 60.245 43.478 0.00 0.00 0.00 3.41
3955 4283 2.107378 TGGTGTTTTGTCCAGCTATCCA 59.893 45.455 0.00 0.00 0.00 3.41
3956 4284 2.488153 GTGGTGTTTTGTCCAGCTATCC 59.512 50.000 0.00 0.00 34.16 2.59
3957 4285 3.146066 TGTGGTGTTTTGTCCAGCTATC 58.854 45.455 0.00 0.00 34.16 2.08
3958 4286 3.222173 TGTGGTGTTTTGTCCAGCTAT 57.778 42.857 0.00 0.00 34.16 2.97
3959 4287 2.719531 TGTGGTGTTTTGTCCAGCTA 57.280 45.000 0.00 0.00 34.16 3.32
3960 4288 1.846007 TTGTGGTGTTTTGTCCAGCT 58.154 45.000 0.00 0.00 34.16 4.24
3961 4289 2.663826 TTTGTGGTGTTTTGTCCAGC 57.336 45.000 0.00 0.00 34.16 4.85
3962 4290 4.753233 TCAATTTGTGGTGTTTTGTCCAG 58.247 39.130 0.00 0.00 34.16 3.86
3963 4291 4.808414 TCAATTTGTGGTGTTTTGTCCA 57.192 36.364 0.00 0.00 0.00 4.02
3964 4292 6.676237 AATTCAATTTGTGGTGTTTTGTCC 57.324 33.333 0.00 0.00 0.00 4.02
3965 4293 8.962857 AAAAATTCAATTTGTGGTGTTTTGTC 57.037 26.923 0.00 0.00 31.77 3.18
3987 4315 2.616842 GGACGTGAAGAAGCAGGAAAAA 59.383 45.455 0.00 0.00 0.00 1.94
3988 4316 2.218603 GGACGTGAAGAAGCAGGAAAA 58.781 47.619 0.00 0.00 0.00 2.29
3989 4317 1.140052 TGGACGTGAAGAAGCAGGAAA 59.860 47.619 0.00 0.00 0.00 3.13
3990 4318 0.756294 TGGACGTGAAGAAGCAGGAA 59.244 50.000 0.00 0.00 0.00 3.36
3991 4319 0.756294 TTGGACGTGAAGAAGCAGGA 59.244 50.000 0.00 0.00 0.00 3.86
3992 4320 1.151668 CTTGGACGTGAAGAAGCAGG 58.848 55.000 0.00 0.00 0.00 4.85
3993 4321 0.514691 GCTTGGACGTGAAGAAGCAG 59.485 55.000 0.00 0.00 40.47 4.24
3994 4322 0.884704 GGCTTGGACGTGAAGAAGCA 60.885 55.000 15.38 0.00 42.17 3.91
3995 4323 1.578206 GGGCTTGGACGTGAAGAAGC 61.578 60.000 0.00 0.33 40.12 3.86
3996 4324 0.250295 TGGGCTTGGACGTGAAGAAG 60.250 55.000 0.00 0.00 0.00 2.85
3997 4325 0.534203 GTGGGCTTGGACGTGAAGAA 60.534 55.000 0.00 0.00 0.00 2.52
3998 4326 1.070786 GTGGGCTTGGACGTGAAGA 59.929 57.895 0.00 0.00 0.00 2.87
3999 4327 1.227823 TGTGGGCTTGGACGTGAAG 60.228 57.895 0.00 0.00 0.00 3.02
4000 4328 1.525077 GTGTGGGCTTGGACGTGAA 60.525 57.895 0.00 0.00 0.00 3.18
4001 4329 2.050836 ATGTGTGGGCTTGGACGTGA 62.051 55.000 0.00 0.00 0.00 4.35
4002 4330 1.577328 GATGTGTGGGCTTGGACGTG 61.577 60.000 0.00 0.00 0.00 4.49
4003 4331 1.302511 GATGTGTGGGCTTGGACGT 60.303 57.895 0.00 0.00 0.00 4.34
4004 4332 0.677731 ATGATGTGTGGGCTTGGACG 60.678 55.000 0.00 0.00 0.00 4.79
4005 4333 2.017049 GTATGATGTGTGGGCTTGGAC 58.983 52.381 0.00 0.00 0.00 4.02
4006 4334 1.915489 AGTATGATGTGTGGGCTTGGA 59.085 47.619 0.00 0.00 0.00 3.53
4007 4335 2.425143 AGTATGATGTGTGGGCTTGG 57.575 50.000 0.00 0.00 0.00 3.61
4008 4336 4.789012 AAAAGTATGATGTGTGGGCTTG 57.211 40.909 0.00 0.00 0.00 4.01
4009 4337 5.418840 CCTAAAAAGTATGATGTGTGGGCTT 59.581 40.000 0.00 0.00 0.00 4.35
4010 4338 4.949856 CCTAAAAAGTATGATGTGTGGGCT 59.050 41.667 0.00 0.00 0.00 5.19
4011 4339 4.947388 TCCTAAAAAGTATGATGTGTGGGC 59.053 41.667 0.00 0.00 0.00 5.36
4012 4340 5.064707 CGTCCTAAAAAGTATGATGTGTGGG 59.935 44.000 0.00 0.00 0.00 4.61
4013 4341 5.064707 CCGTCCTAAAAAGTATGATGTGTGG 59.935 44.000 0.00 0.00 0.00 4.17
4014 4342 5.872617 TCCGTCCTAAAAAGTATGATGTGTG 59.127 40.000 0.00 0.00 0.00 3.82
4015 4343 6.045072 TCCGTCCTAAAAAGTATGATGTGT 57.955 37.500 0.00 0.00 0.00 3.72
4016 4344 7.553881 AATCCGTCCTAAAAAGTATGATGTG 57.446 36.000 0.00 0.00 0.00 3.21
4017 4345 7.415206 GCAAATCCGTCCTAAAAAGTATGATGT 60.415 37.037 0.00 0.00 0.00 3.06
4018 4346 6.912591 GCAAATCCGTCCTAAAAAGTATGATG 59.087 38.462 0.00 0.00 0.00 3.07
4019 4347 6.039382 GGCAAATCCGTCCTAAAAAGTATGAT 59.961 38.462 0.00 0.00 0.00 2.45
4020 4348 5.355910 GGCAAATCCGTCCTAAAAAGTATGA 59.644 40.000 0.00 0.00 0.00 2.15
4021 4349 5.449999 GGGCAAATCCGTCCTAAAAAGTATG 60.450 44.000 0.00 0.00 34.94 2.39
4022 4350 4.643334 GGGCAAATCCGTCCTAAAAAGTAT 59.357 41.667 0.00 0.00 34.94 2.12
4023 4351 4.011698 GGGCAAATCCGTCCTAAAAAGTA 58.988 43.478 0.00 0.00 34.94 2.24
4024 4352 2.823747 GGGCAAATCCGTCCTAAAAAGT 59.176 45.455 0.00 0.00 34.94 2.66
4025 4353 3.089284 AGGGCAAATCCGTCCTAAAAAG 58.911 45.455 0.00 0.00 39.96 2.27
4026 4354 3.086282 GAGGGCAAATCCGTCCTAAAAA 58.914 45.455 0.00 0.00 42.53 1.94
4027 4355 2.718563 GAGGGCAAATCCGTCCTAAAA 58.281 47.619 0.00 0.00 42.53 1.52
4028 4356 2.413310 GAGGGCAAATCCGTCCTAAA 57.587 50.000 0.00 0.00 42.53 1.85
4034 4362 0.322546 GAACCAGAGGGCAAATCCGT 60.323 55.000 0.00 0.00 37.90 4.69
4035 4363 1.369091 CGAACCAGAGGGCAAATCCG 61.369 60.000 0.00 0.00 37.90 4.18
4036 4364 0.322546 ACGAACCAGAGGGCAAATCC 60.323 55.000 0.00 0.00 37.90 3.01
4037 4365 1.534729 AACGAACCAGAGGGCAAATC 58.465 50.000 0.00 0.00 37.90 2.17
4038 4366 1.886542 GAAACGAACCAGAGGGCAAAT 59.113 47.619 0.00 0.00 37.90 2.32
4039 4367 1.314730 GAAACGAACCAGAGGGCAAA 58.685 50.000 0.00 0.00 37.90 3.68
4040 4368 3.015516 GAAACGAACCAGAGGGCAA 57.984 52.632 0.00 0.00 37.90 4.52
4041 4369 4.792087 GAAACGAACCAGAGGGCA 57.208 55.556 0.00 0.00 37.90 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.