Multiple sequence alignment - TraesCS4A01G176400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G176400 chr4A 100.000 3497 0 0 1 3497 448091635 448095131 0.000000e+00 6458
1 TraesCS4A01G176400 chr4A 84.171 2110 272 38 464 2540 447791680 447793760 0.000000e+00 1989
2 TraesCS4A01G176400 chr4A 95.413 109 5 0 2716 2824 448094458 448094350 1.290000e-39 174
3 TraesCS4A01G176400 chr4D 94.510 3534 134 34 5 3497 122275569 122272055 0.000000e+00 5397
4 TraesCS4A01G176400 chr4D 85.036 2105 256 31 470 2543 122287415 122285339 0.000000e+00 2087
5 TraesCS4A01G176400 chr4B 95.717 2755 94 14 3 2736 185911503 185908752 0.000000e+00 4412
6 TraesCS4A01G176400 chr4B 84.123 2110 267 41 470 2542 186592970 186590892 0.000000e+00 1978
7 TraesCS4A01G176400 chr4B 95.090 387 18 1 2812 3197 185908617 185908231 2.980000e-170 608
8 TraesCS4A01G176400 chr4B 94.372 231 13 0 3267 3497 185908245 185908015 4.290000e-94 355
9 TraesCS4A01G176400 chr5A 88.591 149 13 4 3350 3495 671167577 671167724 9.970000e-41 178
10 TraesCS4A01G176400 chr7B 95.370 108 4 1 2714 2821 457401407 457401513 1.670000e-38 171
11 TraesCS4A01G176400 chr7B 93.750 112 3 1 2715 2822 15305657 15305768 7.770000e-37 165
12 TraesCS4A01G176400 chr1B 95.413 109 1 1 2718 2822 229263269 229263161 1.670000e-38 171
13 TraesCS4A01G176400 chr7A 95.327 107 1 1 2719 2821 139521198 139521092 2.160000e-37 167
14 TraesCS4A01G176400 chr7A 95.833 72 2 1 3199 3270 156870524 156870454 7.930000e-22 115
15 TraesCS4A01G176400 chr6A 95.283 106 3 1 2718 2823 573407729 573407626 2.160000e-37 167
16 TraesCS4A01G176400 chr3D 93.750 112 4 1 2717 2825 74370135 74370024 7.770000e-37 165
17 TraesCS4A01G176400 chr3D 97.101 69 2 0 3199 3267 558685556 558685624 2.210000e-22 117
18 TraesCS4A01G176400 chr2A 94.495 109 2 2 2718 2822 660176753 660176861 7.770000e-37 165
19 TraesCS4A01G176400 chr2A 89.683 126 7 4 2718 2837 660176861 660176736 4.670000e-34 156
20 TraesCS4A01G176400 chr2D 98.529 68 1 0 3199 3266 367233636 367233703 1.700000e-23 121
21 TraesCS4A01G176400 chr2B 95.946 74 2 1 3199 3272 185378352 185378280 6.130000e-23 119
22 TraesCS4A01G176400 chr2B 94.595 74 3 1 3199 3272 406876260 406876188 2.850000e-21 113
23 TraesCS4A01G176400 chrUn 97.101 69 2 0 3199 3267 100782301 100782233 2.210000e-22 117
24 TraesCS4A01G176400 chr1A 97.101 69 2 0 3199 3267 461022994 461022926 2.210000e-22 117
25 TraesCS4A01G176400 chr1A 92.308 78 4 2 3190 3266 500830311 500830387 3.690000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G176400 chr4A 448091635 448095131 3496 False 6458.000000 6458 100.000000 1 3497 1 chr4A.!!$F2 3496
1 TraesCS4A01G176400 chr4A 447791680 447793760 2080 False 1989.000000 1989 84.171000 464 2540 1 chr4A.!!$F1 2076
2 TraesCS4A01G176400 chr4D 122272055 122275569 3514 True 5397.000000 5397 94.510000 5 3497 1 chr4D.!!$R1 3492
3 TraesCS4A01G176400 chr4D 122285339 122287415 2076 True 2087.000000 2087 85.036000 470 2543 1 chr4D.!!$R2 2073
4 TraesCS4A01G176400 chr4B 186590892 186592970 2078 True 1978.000000 1978 84.123000 470 2542 1 chr4B.!!$R1 2072
5 TraesCS4A01G176400 chr4B 185908015 185911503 3488 True 1791.666667 4412 95.059667 3 3497 3 chr4B.!!$R2 3494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
117 118 0.172578 GGCCGCCCAGTTCAATTAAC 59.827 55.0 0.00 0.0 38.46 2.01 F
1812 1901 0.699577 TCCCTCAACCTGGGTTCCAA 60.700 55.0 1.55 0.0 44.84 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2008 2097 0.390860 CTGGGGCTCGGAGTATCAAG 59.609 60.0 6.90 0.0 36.25 3.02 R
2802 2893 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.0 5.23 0.0 44.66 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 0.742635 GAGTGACTGCCTAGCTTGCC 60.743 60.000 0.00 0.00 0.00 4.52
68 69 0.989602 GCCTAGGGTTGGTGTACCTT 59.010 55.000 11.72 0.00 38.30 3.50
106 107 3.740495 TTTGGTTCTTGGCCGCCCA 62.740 57.895 7.03 0.00 40.06 5.36
117 118 0.172578 GGCCGCCCAGTTCAATTAAC 59.827 55.000 0.00 0.00 38.46 2.01
134 140 8.948631 TCAATTAACTAATAAGCACTCCTCAG 57.051 34.615 0.00 0.00 0.00 3.35
187 199 5.794687 TGTTGTTCGATTAGCCATGTTAG 57.205 39.130 0.00 0.00 0.00 2.34
188 200 4.634004 TGTTGTTCGATTAGCCATGTTAGG 59.366 41.667 0.00 0.00 0.00 2.69
223 243 7.601705 TCATCACCTTCCTTTTTCTTTCATT 57.398 32.000 0.00 0.00 0.00 2.57
230 250 8.762645 ACCTTCCTTTTTCTTTCATTTCTTTCT 58.237 29.630 0.00 0.00 0.00 2.52
370 390 7.237982 TCTTCCATGGTTTCATCCTTTAAAGA 58.762 34.615 16.98 5.64 0.00 2.52
419 439 5.447413 GCGGAGTAAATTCCACTTCTTTAGC 60.447 44.000 0.00 0.00 37.05 3.09
429 453 5.611374 TCCACTTCTTTAGCCATACATAGC 58.389 41.667 0.00 0.00 0.00 2.97
847 921 2.716244 CCTACGACGCAGCGATCT 59.284 61.111 24.65 0.00 34.83 2.75
1086 1160 2.438434 CCGGCCATGAAGGTGGAC 60.438 66.667 2.24 0.00 44.28 4.02
1103 1177 3.953775 CCAAGTGGTGGCCGGAGT 61.954 66.667 5.05 0.00 41.72 3.85
1273 1356 3.793144 GGGTTCAGCAGCTTCGCG 61.793 66.667 0.00 0.00 36.85 5.87
1361 1450 1.448540 GTGAGATGGTGGACCTGCG 60.449 63.158 0.00 0.00 36.82 5.18
1479 1568 3.202001 GATGCGGCGCAAAGGCTA 61.202 61.111 39.46 14.26 43.62 3.93
1812 1901 0.699577 TCCCTCAACCTGGGTTCCAA 60.700 55.000 1.55 0.00 44.84 3.53
2137 2226 2.185310 GACACGGTTCAGGGAGGCAT 62.185 60.000 0.00 0.00 0.00 4.40
2263 2352 0.038599 TGTCATTGCATGTGAGGGCT 59.961 50.000 2.81 0.00 0.00 5.19
2271 2360 3.023949 ATGTGAGGGCTCAGACCGC 62.024 63.158 0.00 0.00 40.75 5.68
2504 2593 4.479619 GACAATGCAACCTAGCTTCTTTG 58.520 43.478 0.00 0.00 34.99 2.77
2655 2746 8.375608 AGTAGTCATTTGATTATGCTCATCAC 57.624 34.615 0.00 0.00 30.09 3.06
2685 2776 7.984050 TCATGAAGCTTAGATCTGAAACTTAGG 59.016 37.037 5.18 0.00 0.00 2.69
2730 2821 1.629043 TGGCATATACTCCCTCCGTC 58.371 55.000 0.00 0.00 0.00 4.79
2732 2823 0.526662 GCATATACTCCCTCCGTCCG 59.473 60.000 0.00 0.00 0.00 4.79
2737 2828 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
2738 2829 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
2739 2830 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
2745 2836 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02
2749 2840 1.142060 TCCGAAAAAGCTTGTCCCTCA 59.858 47.619 0.00 0.00 0.00 3.86
2751 2842 2.360801 CCGAAAAAGCTTGTCCCTCAAA 59.639 45.455 0.00 0.00 35.48 2.69
2754 2845 4.309933 GAAAAAGCTTGTCCCTCAAATGG 58.690 43.478 0.00 0.00 35.48 3.16
2757 2848 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
2758 2849 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
2760 2851 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
2765 2856 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
2766 2857 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
2767 2858 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
2771 2862 6.057533 TCAAATGGATGTATCTAGCACCAAG 58.942 40.000 0.00 0.00 0.00 3.61
2772 2863 5.636903 AATGGATGTATCTAGCACCAAGT 57.363 39.130 0.00 0.00 0.00 3.16
2773 2864 4.406648 TGGATGTATCTAGCACCAAGTG 57.593 45.455 0.00 0.00 36.51 3.16
2786 2877 4.406648 CACCAAGTGCTAGATACATCCA 57.593 45.455 0.00 0.00 0.00 3.41
2787 2878 4.965814 CACCAAGTGCTAGATACATCCAT 58.034 43.478 0.00 0.00 0.00 3.41
2788 2879 5.371526 CACCAAGTGCTAGATACATCCATT 58.628 41.667 0.00 0.00 0.00 3.16
2792 2883 6.204301 CCAAGTGCTAGATACATCCATTTGAG 59.796 42.308 0.00 0.00 0.00 3.02
2793 2884 5.862845 AGTGCTAGATACATCCATTTGAGG 58.137 41.667 0.00 0.00 0.00 3.86
2794 2885 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
2795 2886 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
2796 2887 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
2797 2888 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
2798 2889 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
2799 2890 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
2800 2891 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
2801 2892 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
2802 2893 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
2803 2894 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
2804 2895 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
2805 2896 3.573967 TCCATTTGAGGGACAAGCTTTTC 59.426 43.478 3.91 3.91 39.77 2.29
2806 2897 3.306294 CCATTTGAGGGACAAGCTTTTCC 60.306 47.826 21.34 21.34 39.77 3.13
2807 2898 1.604604 TTGAGGGACAAGCTTTTCCG 58.395 50.000 22.30 2.85 34.20 4.30
2830 2981 5.759273 CGGACGGAGGGAGTATATCTATAAG 59.241 48.000 0.00 0.00 0.00 1.73
2884 3035 6.811170 AGATTTTGTAACAACACACCACAAAG 59.189 34.615 0.00 0.00 39.48 2.77
2977 3129 4.946157 AGATATGTGTTGAAGCCTCAAAGG 59.054 41.667 0.00 0.00 43.18 3.11
3079 3231 4.458989 ACATAACATGAAGTTTGCACCGAT 59.541 37.500 0.00 0.00 41.64 4.18
3166 3318 9.683069 CTTTGATCTTATAACTGTTTTTGCTGT 57.317 29.630 0.00 0.00 0.00 4.40
3206 3358 0.249868 TCGGGCAAGCCGATCTTATG 60.250 55.000 4.80 0.00 36.85 1.90
3228 3380 1.112113 TTTCAGCTCTAGCCTACCCG 58.888 55.000 0.00 0.00 43.38 5.28
3262 3414 5.416083 GGACTAAAGGCTTTGTTGTTGTTT 58.584 37.500 22.32 0.00 0.00 2.83
3263 3415 5.290885 GGACTAAAGGCTTTGTTGTTGTTTG 59.709 40.000 22.32 0.00 0.00 2.93
3265 3417 6.227522 ACTAAAGGCTTTGTTGTTGTTTGTT 58.772 32.000 22.32 0.00 0.00 2.83
3272 3430 7.012943 GGCTTTGTTGTTGTTTGTTTAACTTC 58.987 34.615 0.00 0.00 37.64 3.01
3477 3635 4.389374 CCAGAGAAAACCAGAGTAGCAAA 58.611 43.478 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.181904 TCCGTTTCCTTTTAGTCCGTATATAT 57.818 34.615 0.00 0.00 0.00 0.86
31 32 0.742635 GCAAGCTAGGCAGTCACTCC 60.743 60.000 5.48 0.00 0.00 3.85
51 52 3.170717 TGAGAAGGTACACCAACCCTAG 58.829 50.000 0.38 0.00 40.71 3.02
91 92 4.660938 ACTGGGCGGCCAAGAACC 62.661 66.667 32.11 7.10 0.00 3.62
117 118 4.662468 TCTGCTGAGGAGTGCTTATTAG 57.338 45.455 0.00 0.00 0.00 1.73
125 126 4.205065 AGAAGATTTCTGCTGAGGAGTG 57.795 45.455 0.00 0.00 38.91 3.51
158 164 7.224753 ACATGGCTAATCGAACAACAATAGTAG 59.775 37.037 0.00 0.00 0.00 2.57
159 165 7.045416 ACATGGCTAATCGAACAACAATAGTA 58.955 34.615 0.00 0.00 0.00 1.82
160 166 5.880332 ACATGGCTAATCGAACAACAATAGT 59.120 36.000 0.00 0.00 0.00 2.12
161 167 6.363577 ACATGGCTAATCGAACAACAATAG 57.636 37.500 0.00 0.00 0.00 1.73
162 168 6.751514 AACATGGCTAATCGAACAACAATA 57.248 33.333 0.00 0.00 0.00 1.90
163 169 5.643379 AACATGGCTAATCGAACAACAAT 57.357 34.783 0.00 0.00 0.00 2.71
165 171 4.634004 CCTAACATGGCTAATCGAACAACA 59.366 41.667 0.00 0.00 0.00 3.33
166 172 5.156804 CCTAACATGGCTAATCGAACAAC 57.843 43.478 0.00 0.00 0.00 3.32
188 200 0.179062 AGGTGATGATGAGGCTTCGC 60.179 55.000 0.00 0.00 0.00 4.70
190 209 2.172293 AGGAAGGTGATGATGAGGCTTC 59.828 50.000 0.00 0.00 0.00 3.86
199 218 7.601705 AATGAAAGAAAAAGGAAGGTGATGA 57.398 32.000 0.00 0.00 0.00 2.92
207 226 8.260114 AGCAGAAAGAAATGAAAGAAAAAGGAA 58.740 29.630 0.00 0.00 0.00 3.36
223 243 0.401738 CCAGGGTGGAGCAGAAAGAA 59.598 55.000 0.00 0.00 40.96 2.52
230 250 3.016971 CATCCCCAGGGTGGAGCA 61.017 66.667 4.22 0.00 40.96 4.26
396 416 5.064834 GGCTAAAGAAGTGGAATTTACTCCG 59.935 44.000 0.00 0.00 38.44 4.63
419 439 5.874810 AGTTGTACACTTGTGCTATGTATGG 59.125 40.000 0.00 0.00 31.79 2.74
429 453 3.120025 TGTTGTGCAGTTGTACACTTGTG 60.120 43.478 2.44 0.00 40.26 3.33
492 518 1.504275 AACTCTGCTGCCCCAGGAAT 61.504 55.000 0.00 0.00 30.12 3.01
776 820 0.898789 GTCGAAGGTGGAGGTGGAGA 60.899 60.000 0.00 0.00 0.00 3.71
847 921 2.347691 TAGGGCGGCCGTGAGATCTA 62.348 60.000 28.70 15.45 0.00 1.98
1278 1364 2.813726 CCCGGGTTCACTGTCCACA 61.814 63.158 14.18 0.00 0.00 4.17
1644 1733 3.011818 CACAGCATTGCAGATGGTCTTA 58.988 45.455 11.91 0.00 0.00 2.10
1812 1901 1.207791 CCTCAATGTGGTAGGCTCCT 58.792 55.000 0.00 0.00 0.00 3.69
1934 2023 1.141881 ACCTCATCACGGTCGATGC 59.858 57.895 12.67 0.00 42.15 3.91
2008 2097 0.390860 CTGGGGCTCGGAGTATCAAG 59.609 60.000 6.90 0.00 36.25 3.02
2061 2150 1.679680 CCATGGATGAACACATCTGGC 59.320 52.381 5.56 0.00 39.93 4.85
2137 2226 2.570415 TGGGCCGAGTAATTGAACAA 57.430 45.000 0.00 0.00 0.00 2.83
2504 2593 7.315142 TGTCAATAATCCAAGTTTGATTGAGC 58.685 34.615 11.47 0.73 34.81 4.26
2655 2746 5.131594 TCAGATCTAAGCTTCATGATCCG 57.868 43.478 22.45 16.92 36.82 4.18
2730 2821 1.604604 TGAGGGACAAGCTTTTTCGG 58.395 50.000 0.00 0.00 0.00 4.30
2732 2823 4.039124 TCCATTTGAGGGACAAGCTTTTTC 59.961 41.667 0.00 0.00 39.77 2.29
2737 2828 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
2738 2829 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
2739 2830 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
2745 2836 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
2749 2840 5.824624 CACTTGGTGCTAGATACATCCATTT 59.175 40.000 0.00 0.00 0.00 2.32
2751 2842 4.965814 CACTTGGTGCTAGATACATCCAT 58.034 43.478 0.00 0.00 0.00 3.41
2765 2856 4.406648 TGGATGTATCTAGCACTTGGTG 57.593 45.455 0.00 0.00 36.51 4.17
2766 2857 5.636903 AATGGATGTATCTAGCACTTGGT 57.363 39.130 0.00 0.00 0.00 3.67
2767 2858 6.057533 TCAAATGGATGTATCTAGCACTTGG 58.942 40.000 0.00 0.00 0.00 3.61
2771 2862 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
2772 2863 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
2773 2864 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
2774 2865 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
2775 2866 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
2776 2867 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
2781 2872 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
2783 2874 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
2784 2875 3.306294 GGAAAAGCTTGTCCCTCAAATGG 60.306 47.826 23.49 0.00 35.48 3.16
2785 2876 3.612479 CGGAAAAGCTTGTCCCTCAAATG 60.612 47.826 26.94 9.69 35.48 2.32
2786 2877 2.558359 CGGAAAAGCTTGTCCCTCAAAT 59.442 45.455 26.94 0.00 35.48 2.32
2787 2878 1.953686 CGGAAAAGCTTGTCCCTCAAA 59.046 47.619 26.94 0.00 35.48 2.69
2788 2879 1.604604 CGGAAAAGCTTGTCCCTCAA 58.395 50.000 26.94 0.00 34.61 3.02
2792 2883 1.574702 CGTCCGGAAAAGCTTGTCCC 61.575 60.000 26.94 13.97 0.00 4.46
2793 2884 1.574702 CCGTCCGGAAAAGCTTGTCC 61.575 60.000 24.00 24.00 37.50 4.02
2794 2885 0.601841 TCCGTCCGGAAAAGCTTGTC 60.602 55.000 5.23 8.23 42.05 3.18
2795 2886 0.602905 CTCCGTCCGGAAAAGCTTGT 60.603 55.000 5.23 0.00 44.66 3.16
2796 2887 1.298859 CCTCCGTCCGGAAAAGCTTG 61.299 60.000 5.23 0.00 44.66 4.01
2797 2888 1.003718 CCTCCGTCCGGAAAAGCTT 60.004 57.895 5.23 0.00 44.66 3.74
2798 2889 2.663196 CCTCCGTCCGGAAAAGCT 59.337 61.111 5.23 0.00 44.66 3.74
2799 2890 2.436115 CCCTCCGTCCGGAAAAGC 60.436 66.667 5.23 0.00 44.66 3.51
2800 2891 1.218316 CTCCCTCCGTCCGGAAAAG 59.782 63.158 5.23 3.59 44.66 2.27
2801 2892 0.251742 TACTCCCTCCGTCCGGAAAA 60.252 55.000 5.23 0.00 44.66 2.29
2802 2893 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2803 2894 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
2804 2895 1.004044 GATATACTCCCTCCGTCCGGA 59.996 57.143 0.00 0.00 42.90 5.14
2805 2896 1.004511 AGATATACTCCCTCCGTCCGG 59.995 57.143 0.00 0.00 0.00 5.14
2806 2897 2.493414 AGATATACTCCCTCCGTCCG 57.507 55.000 0.00 0.00 0.00 4.79
2807 2898 6.661777 ACTTATAGATATACTCCCTCCGTCC 58.338 44.000 0.00 0.00 0.00 4.79
2830 2981 0.179129 CGATGGCCAAAGCATCCAAC 60.179 55.000 10.96 0.00 42.56 3.77
2884 3035 7.506114 TGACATATTCATAAACCCCTACAGAC 58.494 38.462 0.00 0.00 0.00 3.51
3079 3231 4.885907 GCCCATCTTTCTCAGAAATCATCA 59.114 41.667 0.00 0.00 34.16 3.07
3206 3358 1.139256 GGTAGGCTAGAGCTGAAACCC 59.861 57.143 0.00 0.00 41.70 4.11
3228 3380 3.889538 AGCCTTTAGTCCCAAACAAGTTC 59.110 43.478 0.00 0.00 0.00 3.01
3262 3414 1.877443 GAGCTTGCCCGAAGTTAAACA 59.123 47.619 0.00 0.00 33.73 2.83
3263 3415 1.136057 CGAGCTTGCCCGAAGTTAAAC 60.136 52.381 0.00 0.00 33.73 2.01
3265 3417 0.672401 CCGAGCTTGCCCGAAGTTAA 60.672 55.000 0.00 0.00 33.73 2.01
3272 3430 0.317160 TATATCACCGAGCTTGCCCG 59.683 55.000 0.00 0.00 0.00 6.13
3404 3562 3.054434 CCATGGGACCAGTATCTGAAACA 60.054 47.826 2.85 0.00 32.44 2.83
3415 3573 1.205417 GAATGCAAACCATGGGACCAG 59.795 52.381 18.09 2.08 33.49 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.